data_8VOE # _entry.id 8VOE # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.401 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8VOE pdb_00008voe 10.2210/pdb8voe/pdb WWPDB D_1000280634 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2025-01-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8VOE _pdbx_database_status.recvd_initial_deposition_date 2024-01-15 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible N # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB . 8V5J unspecified PDB . 8VIU unspecified PDB . 8V4T unspecified # _pdbx_contact_author.id 3 _pdbx_contact_author.email wdw@gsu.edu _pdbx_contact_author.name_first W _pdbx_contact_author.name_last Wilson _pdbx_contact_author.name_mi David _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-5225-5089 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Terrell, J.R.' 1 0000-0001-5394-5663 'Wilson, W.D.' 2 0000-0001-5225-5089 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Structural Examination of DNA Minor Groove Binding by Diamidine Stacked Dimers' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Terrell, J.R.' 1 0000-0001-5394-5663 primary 'Paul, A.' 2 ? primary 'Ogbonna, E.N.' 3 ? primary 'Farahat, A.A.' 4 ? primary 'Wilson, W.D.' 5 0000-0001-5225-5089 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*GP*CP*TP*GP*GP*AP*TP*TP*AP*AP*TP*CP*CP*AP*GP*C)-3') ; 4898.191 1 ? ? ? ? 2 non-polymer syn '(2M)-2-[(5P)-5-(5-carbamimidoylthiophen-2-yl)furan-2-yl]-1H-benzimidazole-6-carboximidamide' 350.398 1 ? ? ? ? 3 non-polymer syn 'CALCIUM ION' 40.078 7 ? ? ? ? 4 water nat water 18.015 18 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DG)(DC)(DT)(DG)(DG)(DA)(DT)(DT)(DA)(DA)(DT)(DC)(DC)(DA)(DG)(DC)' _entity_poly.pdbx_seq_one_letter_code_can GCTGGATTAATCCAGC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '(2M)-2-[(5P)-5-(5-carbamimidoylthiophen-2-yl)furan-2-yl]-1H-benzimidazole-6-carboximidamide' A1AB3 3 'CALCIUM ION' CA 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DC n 1 3 DT n 1 4 DG n 1 5 DG n 1 6 DA n 1 7 DT n 1 8 DT n 1 9 DA n 1 10 DA n 1 11 DT n 1 12 DC n 1 13 DC n 1 14 DA n 1 15 DG n 1 16 DC n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 16 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A1AB3 non-polymer . '(2M)-2-[(5P)-5-(5-carbamimidoylthiophen-2-yl)furan-2-yl]-1H-benzimidazole-6-carboximidamide' ? 'C17 H14 N6 O S' 350.398 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG DG A . n A 1 2 DC 2 2 2 DC DC A . n A 1 3 DT 3 3 3 DT DT A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DG 5 5 5 DG DG A . n A 1 6 DA 6 6 6 DA DA A . n A 1 7 DT 7 7 7 DT DT A . n A 1 8 DT 8 8 8 DT DT A . n A 1 9 DA 9 9 9 DA DA A . n A 1 10 DA 10 10 10 DA DA A . n A 1 11 DT 11 11 11 DT DT A . n A 1 12 DC 12 12 12 DC DC A . n A 1 13 DC 13 13 13 DC DC A . n A 1 14 DA 14 14 14 DA DA A . n A 1 15 DG 15 15 15 DG DG A . n A 1 16 DC 16 16 16 DC DC A . n # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 A1AB3 ? ? A1AB3 ? ? 'SUBJECT OF INVESTIGATION' ? 2 CA ? ? CA ? ? 'SUBJECT OF INVESTIGATION' ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A1AB3 1 101 101 A1AB3 992 A . C 3 CA 1 102 1 CA CA A . D 3 CA 1 103 2 CA CA A . E 3 CA 1 104 3 CA CA A . F 3 CA 1 105 4 CA CA A . G 3 CA 1 106 5 CA CA A . H 3 CA 1 107 6 CA CA A . I 3 CA 1 108 7 CA CA A . J 4 HOH 1 201 6 HOH HOH A . J 4 HOH 2 202 7 HOH HOH A . J 4 HOH 3 203 15 HOH HOH A . J 4 HOH 4 204 13 HOH HOH A . J 4 HOH 5 205 10 HOH HOH A . J 4 HOH 6 206 14 HOH HOH A . J 4 HOH 7 207 8 HOH HOH A . J 4 HOH 8 208 12 HOH HOH A . J 4 HOH 9 209 11 HOH HOH A . J 4 HOH 10 210 5 HOH HOH A . J 4 HOH 11 211 18 HOH HOH A . J 4 HOH 12 212 20 HOH HOH A . J 4 HOH 13 213 4 HOH HOH A . J 4 HOH 14 214 19 HOH HOH A . J 4 HOH 15 215 9 HOH HOH A . J 4 HOH 16 216 1 HOH HOH A . J 4 HOH 17 217 3 HOH HOH A . J 4 HOH 18 218 2 HOH HOH A . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.19.2_4158 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 8VOE _cell.details ? _cell.formula_units_Z ? _cell.length_a 38.116 _cell.length_a_esd ? _cell.length_b 38.116 _cell.length_b_esd ? _cell.length_c 162.999 _cell.length_c_esd ? _cell.volume 205083.258 _cell.volume_esd ? _cell.Z_PDB 18 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8VOE _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ;R 3 2" ; _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8VOE _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.33 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 47.12 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 8.6 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '10mM HEPES, pH=8.6, 600mM CaCl2, 42% PEG200 mixed 1:1 with 1mM DNA duplex containing 3.5 stoichiometric equivalents of DB1992' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 295 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2023-03-24 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'Horizontal DCM' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979346 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'NSLS-II BEAMLINE 17-ID-2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.979346 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 17-ID-2 _diffrn_source.pdbx_synchrotron_site NSLS-II # _reflns.B_iso_Wilson_estimate 30.04 _reflns.entry_id 8VOE _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.77 _reflns.d_resolution_low 27.17 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 4763 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.25 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 14.1 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 19.88 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.07613 _reflns.pdbx_Rpim_I_all 0.02122 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.998 _reflns.pdbx_CC_star 1 _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs 0.07294 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 1.77 _reflns_shell.d_res_low 1.834 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 4.86 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 476 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 14.1 _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.6054 _reflns_shell.pdbx_Rpim_I_all 0.1601 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.998 _reflns_shell.pdbx_CC_star 0.999 _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all 98.74 _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.5833 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 42.98 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8VOE _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.77 _refine.ls_d_res_low 27.17 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 4738 _refine.ls_number_reflns_R_free 476 _refine.ls_number_reflns_R_work 4262 _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.31 _refine.ls_percent_reflns_R_free 10.05 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2515 _refine.ls_R_factor_R_free 0.2706 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2493 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.38 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 40.0848 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.2304 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.details ? _refine_hist.d_res_high 1.77 _refine_hist.d_res_low 27.17 _refine_hist.number_atoms_solvent 18 _refine_hist.number_atoms_total 375 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 325 _refine_hist.pdbx_number_atoms_ligand 32 _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0189 ? 392 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 2.0951 ? 601 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0994 ? 63 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0149 ? 22 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 31.6895 ? 178 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_R_complete _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free _refine_ls_shell.R_factor_R_free 'X-RAY DIFFRACTION' 1.77 2.03 . . 154 1380 99.16 . . . . 0.2457 . . . . . . . . . . . 0.3400 'X-RAY DIFFRACTION' 2.03 2.55 . . 156 1409 99.68 . . . . 0.3293 . . . . . . . . . . . 0.3529 'X-RAY DIFFRACTION' 2.55 27.17 . . 166 1473 99.09 . . . . 0.2286 . . . . . . . . . . . 0.2435 # _struct.entry_id 8VOE _struct.title ;The DNA 16-mer sequence 5'-GCTGGATTAATCCAGC-3' bound by a DB1992 stacked dimer ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8VOE _struct_keywords.text 'DNA duplex, DNA, 16-mer, self-complementary, diamidine, minor-groove binder' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 4 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8VOE _struct_ref.pdbx_db_accession 8VOE _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8VOE _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 16 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 8VOE _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 16 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 16 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1770 ? 1 MORE -47 ? 1 'SSA (A^2)' 7260 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 17_435 x-y-2/3,-y-4/3,-z+2/3 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 -44.0125657209 0.0000000000 0.0000000000 -1.0000000000 108.6660000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DC 2 OP1 ? ? ? 1_555 G CA . CA ? ? A DC 2 A CA 106 1_555 ? ? ? ? ? ? ? 2.725 ? ? metalc2 metalc ? ? A DC 2 OP1 ? ? ? 1_555 G CA . CA ? ? A DC 2 A CA 106 2_455 ? ? ? ? ? ? ? 2.565 ? ? metalc3 metalc ? ? A DC 2 OP2 ? ? ? 1_555 I CA . CA ? ? A DC 2 A CA 108 3_445 ? ? ? ? ? ? ? 3.066 ? ? metalc4 metalc ? ? A DT 3 OP1 ? ? ? 1_555 I CA . CA ? ? A DT 3 A CA 108 1_555 ? ? ? ? ? ? ? 2.022 ? ? metalc5 metalc ? ? A DA 6 OP1 ? ? ? 1_555 C CA . CA ? ? A DA 6 A CA 102 1_555 ? ? ? ? ? ? ? 2.410 ? ? metalc6 metalc ? ? A DA 6 OP1 ? ? ? 1_555 C CA . CA ? ? A DA 6 A CA 102 3_545 ? ? ? ? ? ? ? 2.114 ? ? metalc7 metalc ? ? A DA 6 OP2 ? ? ? 1_555 D CA . CA ? ? A DA 6 A CA 103 1_555 ? ? ? ? ? ? ? 2.566 ? ? metalc8 metalc ? ? A DA 6 OP2 ? ? ? 1_555 D CA . CA ? ? A DA 6 A CA 103 3_545 ? ? ? ? ? ? ? 2.094 ? ? metalc9 metalc ? ? A DG 15 OP1 ? ? ? 1_555 E CA . CA ? ? A DG 15 A CA 104 1_555 ? ? ? ? ? ? ? 2.285 ? ? metalc10 metalc ? ? A DC 16 OP1 ? ? ? 1_555 F CA . CA ? ? A DC 16 A CA 105 1_555 ? ? ? ? ? ? ? 2.026 ? ? metalc11 metalc ? ? A DC 16 OP1 ? ? ? 1_555 F CA . CA ? ? A DC 16 A CA 105 3_545 ? ? ? ? ? ? ? 2.215 ? ? metalc12 metalc ? ? C CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 102 A HOH 218 1_555 ? ? ? ? ? ? ? 2.388 ? ? metalc13 metalc ? ? C CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 102 A HOH 218 3_545 ? ? ? ? ? ? ? 2.015 ? ? metalc14 metalc ? ? D CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 103 A HOH 217 1_555 ? ? ? ? ? ? ? 2.152 ? ? metalc15 metalc ? ? D CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 103 A HOH 217 3_545 ? ? ? ? ? ? ? 2.199 ? ? metalc16 metalc ? ? E CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 104 A HOH 210 1_555 ? ? ? ? ? ? ? 2.418 ? ? metalc17 metalc ? ? E CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 104 A HOH 212 1_555 ? ? ? ? ? ? ? 2.565 ? ? metalc18 metalc ? ? E CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 104 A HOH 213 1_555 ? ? ? ? ? ? ? 2.764 ? ? metalc19 metalc ? ? E CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 104 A HOH 214 1_555 ? ? ? ? ? ? ? 2.478 ? ? metalc20 metalc ? ? E CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 104 A HOH 216 1_555 ? ? ? ? ? ? ? 2.353 ? ? metalc21 metalc ? ? F CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 105 A HOH 208 1_555 ? ? ? ? ? ? ? 2.337 ? ? metalc22 metalc ? ? F CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 105 A HOH 208 2_445 ? ? ? ? ? ? ? 2.088 ? ? metalc23 metalc ? ? G CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 106 A HOH 211 1_555 ? ? ? ? ? ? ? 2.724 ? ? metalc24 metalc ? ? G CA . CA ? ? ? 1_555 J HOH . O ? ? A CA 106 A HOH 211 2_455 ? ? ? ? ? ? ? 2.592 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DC 16 N3 ? ? A DG 1 A DC 16 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DC 16 O2 ? ? A DG 1 A DC 16 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DC 16 N4 ? ? A DG 1 A DC 16 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 A DG 15 N1 ? ? A DC 2 A DG 15 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 A DG 15 O6 ? ? A DC 2 A DG 15 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 A DG 15 N2 ? ? A DC 2 A DG 15 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 3 N3 ? ? ? 1_555 A DA 14 N1 ? ? A DT 3 A DA 14 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 3 O4 ? ? ? 1_555 A DA 14 N6 ? ? A DT 3 A DA 14 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DC 13 N3 ? ? A DG 4 A DC 13 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DC 13 O2 ? ? A DG 4 A DC 13 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 O6 ? ? ? 1_555 A DC 13 N4 ? ? A DG 4 A DC 13 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 5 N1 ? ? ? 1_555 A DC 12 N3 ? ? A DG 5 A DC 12 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 5 N2 ? ? ? 1_555 A DC 12 O2 ? ? A DG 5 A DC 12 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 5 O6 ? ? ? 1_555 A DC 12 N4 ? ? A DG 5 A DC 12 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N1 ? ? ? 1_555 A DT 11 N3 ? ? A DA 6 A DT 11 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 6 N6 ? ? ? 1_555 A DT 11 O4 ? ? A DA 6 A DT 11 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 7 N3 ? ? ? 1_555 A DA 10 N1 ? ? A DT 7 A DA 10 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 7 O4 ? ? ? 1_555 A DA 10 N6 ? ? A DT 7 A DA 10 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 8 N3 ? ? ? 1_555 A DA 9 N1 ? ? A DT 8 A DA 9 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 8 O4 ? ? ? 1_555 A DA 9 N6 ? ? A DT 8 A DA 9 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DA 9 N1 ? ? ? 1_555 A DT 8 N3 ? ? A DA 9 A DT 8 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DA 9 N6 ? ? ? 1_555 A DT 8 O4 ? ? A DA 9 A DT 8 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DA 10 N1 ? ? ? 1_555 A DT 7 N3 ? ? A DA 10 A DT 7 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DA 10 N6 ? ? ? 1_555 A DT 7 O4 ? ? A DA 10 A DT 7 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DT 11 N3 ? ? ? 1_555 A DA 6 N1 ? ? A DT 11 A DA 6 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DT 11 O4 ? ? ? 1_555 A DA 6 N6 ? ? A DT 11 A DA 6 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 12 N3 ? ? ? 1_555 A DG 5 N1 ? ? A DC 12 A DG 5 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 12 N4 ? ? ? 1_555 A DG 5 O6 ? ? A DC 12 A DG 5 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 12 O2 ? ? ? 1_555 A DG 5 N2 ? ? A DC 12 A DG 5 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DC 13 N3 ? ? ? 1_555 A DG 4 N1 ? ? A DC 13 A DG 4 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DC 13 N4 ? ? ? 1_555 A DG 4 O6 ? ? A DC 13 A DG 4 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DC 13 O2 ? ? ? 1_555 A DG 4 N2 ? ? A DC 13 A DG 4 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DA 14 N1 ? ? ? 1_555 A DT 3 N3 ? ? A DA 14 A DT 3 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DA 14 N6 ? ? ? 1_555 A DT 3 O4 ? ? A DA 14 A DT 3 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DG 15 N1 ? ? ? 1_555 A DC 2 N3 ? ? A DG 15 A DC 2 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DG 15 N2 ? ? ? 1_555 A DC 2 O2 ? ? A DG 15 A DC 2 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DG 15 O6 ? ? ? 1_555 A DC 2 N4 ? ? A DG 15 A DC 2 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A DC 16 N3 ? ? ? 1_555 A DG 1 N1 ? ? A DC 16 A DG 1 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A DC 16 N4 ? ? ? 1_555 A DG 1 O6 ? ? A DC 16 A DG 1 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A DC 16 O2 ? ? ? 1_555 A DG 1 N2 ? ? A DC 16 A DG 1 17_435 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? A DC 2 ? A DC 2 ? 1_555 CA ? G CA . ? A CA 106 ? 1_555 OP1 ? A DC 2 ? A DC 2 ? 1_555 0.0 ? 2 OP1 ? A DC 2 ? A DC 2 ? 1_555 CA ? G CA . ? A CA 106 ? 1_555 O ? J HOH . ? A HOH 211 ? 1_555 97.3 ? 3 OP1 ? A DC 2 ? A DC 2 ? 1_555 CA ? G CA . ? A CA 106 ? 1_555 O ? J HOH . ? A HOH 211 ? 1_555 97.3 ? 4 OP1 ? A DC 2 ? A DC 2 ? 1_555 CA ? G CA . ? A CA 106 ? 1_555 O ? J HOH . ? A HOH 211 ? 2_455 161.5 ? 5 OP1 ? A DC 2 ? A DC 2 ? 1_555 CA ? G CA . ? A CA 106 ? 1_555 O ? J HOH . ? A HOH 211 ? 2_455 161.5 ? 6 O ? J HOH . ? A HOH 211 ? 1_555 CA ? G CA . ? A CA 106 ? 1_555 O ? J HOH . ? A HOH 211 ? 2_455 73.0 ? 7 OP2 ? A DC 2 ? A DC 2 ? 1_555 CA ? I CA . ? A CA 108 ? 3_445 OP1 ? A DT 3 ? A DT 3 ? 1_555 22.8 ? 8 OP1 ? A DA 6 ? A DA 6 ? 1_555 CA ? C CA . ? A CA 102 ? 1_555 OP1 ? A DA 6 ? A DA 6 ? 1_555 0.0 ? 9 OP1 ? A DA 6 ? A DA 6 ? 1_555 CA ? C CA . ? A CA 102 ? 1_555 O ? J HOH . ? A HOH 218 ? 1_555 161.1 ? 10 OP1 ? A DA 6 ? A DA 6 ? 1_555 CA ? C CA . ? A CA 102 ? 1_555 O ? J HOH . ? A HOH 218 ? 1_555 161.1 ? 11 OP1 ? A DA 6 ? A DA 6 ? 1_555 CA ? C CA . ? A CA 102 ? 1_555 O ? J HOH . ? A HOH 218 ? 3_545 97.5 ? 12 OP1 ? A DA 6 ? A DA 6 ? 1_555 CA ? C CA . ? A CA 102 ? 1_555 O ? J HOH . ? A HOH 218 ? 3_545 97.5 ? 13 O ? J HOH . ? A HOH 218 ? 1_555 CA ? C CA . ? A CA 102 ? 1_555 O ? J HOH . ? A HOH 218 ? 3_545 94.5 ? 14 OP2 ? A DA 6 ? A DA 6 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 OP2 ? A DA 6 ? A DA 6 ? 1_555 0.0 ? 15 OP2 ? A DA 6 ? A DA 6 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 O ? J HOH . ? A HOH 217 ? 1_555 165.4 ? 16 OP2 ? A DA 6 ? A DA 6 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 O ? J HOH . ? A HOH 217 ? 1_555 165.4 ? 17 OP2 ? A DA 6 ? A DA 6 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 O ? J HOH . ? A HOH 217 ? 3_545 85.5 ? 18 OP2 ? A DA 6 ? A DA 6 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 O ? J HOH . ? A HOH 217 ? 3_545 85.5 ? 19 O ? J HOH . ? A HOH 217 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 O ? J HOH . ? A HOH 217 ? 3_545 96.2 ? 20 OP1 ? A DG 15 ? A DG 15 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 O ? J HOH . ? A HOH 210 ? 1_555 87.8 ? 21 OP1 ? A DG 15 ? A DG 15 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 O ? J HOH . ? A HOH 212 ? 1_555 88.3 ? 22 O ? J HOH . ? A HOH 210 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 O ? J HOH . ? A HOH 212 ? 1_555 154.8 ? 23 OP1 ? A DG 15 ? A DG 15 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 O ? J HOH . ? A HOH 213 ? 1_555 90.6 ? 24 O ? J HOH . ? A HOH 210 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 O ? J HOH . ? A HOH 213 ? 1_555 105.3 ? 25 O ? J HOH . ? A HOH 212 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 O ? J HOH . ? A HOH 213 ? 1_555 49.9 ? 26 OP1 ? A DG 15 ? A DG 15 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 O ? J HOH . ? A HOH 214 ? 1_555 101.2 ? 27 O ? J HOH . ? A HOH 210 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 O ? J HOH . ? A HOH 214 ? 1_555 141.5 ? 28 O ? J HOH . ? A HOH 212 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 O ? J HOH . ? A HOH 214 ? 1_555 63.6 ? 29 O ? J HOH . ? A HOH 213 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 O ? J HOH . ? A HOH 214 ? 1_555 111.9 ? 30 OP1 ? A DG 15 ? A DG 15 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 O ? J HOH . ? A HOH 216 ? 1_555 173.9 ? 31 O ? J HOH . ? A HOH 210 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 O ? J HOH . ? A HOH 216 ? 1_555 92.3 ? 32 O ? J HOH . ? A HOH 212 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 O ? J HOH . ? A HOH 216 ? 1_555 89.0 ? 33 O ? J HOH . ? A HOH 213 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 O ? J HOH . ? A HOH 216 ? 1_555 83.5 ? 34 O ? J HOH . ? A HOH 214 ? 1_555 CA ? E CA . ? A CA 104 ? 1_555 O ? J HOH . ? A HOH 216 ? 1_555 82.5 ? 35 OP1 ? A DC 16 ? A DC 16 ? 1_555 CA ? F CA . ? A CA 105 ? 1_555 OP1 ? A DC 16 ? A DC 16 ? 1_555 0.0 ? 36 OP1 ? A DC 16 ? A DC 16 ? 1_555 CA ? F CA . ? A CA 105 ? 1_555 O ? J HOH . ? A HOH 208 ? 1_555 90.6 ? 37 OP1 ? A DC 16 ? A DC 16 ? 1_555 CA ? F CA . ? A CA 105 ? 1_555 O ? J HOH . ? A HOH 208 ? 1_555 90.6 ? 38 OP1 ? A DC 16 ? A DC 16 ? 1_555 CA ? F CA . ? A CA 105 ? 1_555 O ? J HOH . ? A HOH 208 ? 2_445 111.7 ? 39 OP1 ? A DC 16 ? A DC 16 ? 1_555 CA ? F CA . ? A CA 105 ? 1_555 O ? J HOH . ? A HOH 208 ? 2_445 111.7 ? 40 O ? J HOH . ? A HOH 208 ? 1_555 CA ? F CA . ? A CA 105 ? 1_555 O ? J HOH . ? A HOH 208 ? 2_445 87.4 ? # _pdbx_entry_details.entry_id 8VOE _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" A DG 4 ? ? "C3'" A DG 4 ? ? 1.380 1.419 -0.039 0.006 N 2 1 P A DA 6 ? ? "O5'" A DA 6 ? ? 1.518 1.593 -0.075 0.010 N 3 1 "O3'" A DA 6 ? ? "C3'" A DA 6 ? ? 1.363 1.419 -0.056 0.006 N 4 1 "O3'" A DT 8 ? ? "C3'" A DT 8 ? ? 1.371 1.419 -0.048 0.006 N 5 1 "O3'" A DG 15 ? ? "C3'" A DG 15 ? ? 1.377 1.419 -0.042 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 113.82 108.30 5.52 0.30 N 2 1 OP1 A DA 6 ? ? P A DA 6 ? ? OP2 A DA 6 ? ? 107.08 119.60 -12.52 1.50 N 3 1 "O5'" A DA 14 ? ? P A DA 14 ? ? OP1 A DA 14 ? ? 99.92 105.70 -5.78 0.90 N 4 1 OP1 A DG 15 ? ? P A DG 15 ? ? OP2 A DG 15 ? ? 128.96 119.60 9.36 1.50 N 5 1 "O4'" A DG 15 ? ? "C1'" A DG 15 ? ? N9 A DG 15 ? ? 110.97 108.30 2.67 0.30 N # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id CA _pdbx_struct_special_symmetry.auth_seq_id 106 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id G _pdbx_struct_special_symmetry.label_comp_id CA _pdbx_struct_special_symmetry.label_seq_id . # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 -y,x-y,z 3 -x+y,-x,z 4 x-y,-y,-z 5 -x,-x+y,-z 6 y,x,-z 7 x+1/3,y+2/3,z+2/3 8 -y+1/3,x-y+2/3,z+2/3 9 -x+y+1/3,-x+2/3,z+2/3 10 x-y+1/3,-y+2/3,-z+2/3 11 -x+1/3,-x+y+2/3,-z+2/3 12 y+1/3,x+2/3,-z+2/3 13 x+2/3,y+1/3,z+1/3 14 -y+2/3,x-y+1/3,z+1/3 15 -x+y+2/3,-x+1/3,z+1/3 16 x-y+2/3,-y+1/3,-z+1/3 17 -x+2/3,-x+y+1/3,-z+1/3 18 y+2/3,x+1/3,-z+1/3 # _pdbx_refine_tls.id 1 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -10.7968882693 _pdbx_refine_tls.origin_y -20.5944964984 _pdbx_refine_tls.origin_z 54.265971402 _pdbx_refine_tls.T[1][1] 0.247840856174 _pdbx_refine_tls.T[1][1]_esd ? _pdbx_refine_tls.T[1][2] 0.006086917276 _pdbx_refine_tls.T[1][2]_esd ? _pdbx_refine_tls.T[1][3] -0.0105114068049 _pdbx_refine_tls.T[1][3]_esd ? _pdbx_refine_tls.T[2][2] 0.454031720538 _pdbx_refine_tls.T[2][2]_esd ? _pdbx_refine_tls.T[2][3] -0.0708282826812 _pdbx_refine_tls.T[2][3]_esd ? _pdbx_refine_tls.T[3][3] 0.236310941989 _pdbx_refine_tls.T[3][3]_esd ? _pdbx_refine_tls.L[1][1] 0.242574429911 _pdbx_refine_tls.L[1][1]_esd ? _pdbx_refine_tls.L[1][2] 0.540090227703 _pdbx_refine_tls.L[1][2]_esd ? _pdbx_refine_tls.L[1][3] -0.226172050968 _pdbx_refine_tls.L[1][3]_esd ? _pdbx_refine_tls.L[2][2] 0.57625640513 _pdbx_refine_tls.L[2][2]_esd ? _pdbx_refine_tls.L[2][3] -0.968351779106 _pdbx_refine_tls.L[2][3]_esd ? _pdbx_refine_tls.L[3][3] 4.07629626325 _pdbx_refine_tls.L[3][3]_esd ? _pdbx_refine_tls.S[1][1] 0.0684250488011 _pdbx_refine_tls.S[1][1]_esd ? _pdbx_refine_tls.S[1][2] -0.106214479429 _pdbx_refine_tls.S[1][2]_esd ? _pdbx_refine_tls.S[1][3] 0.00762832194543 _pdbx_refine_tls.S[1][3]_esd ? _pdbx_refine_tls.S[2][1] 0.0566243941399 _pdbx_refine_tls.S[2][1]_esd ? _pdbx_refine_tls.S[2][2] -0.00332311476257 _pdbx_refine_tls.S[2][2]_esd ? _pdbx_refine_tls.S[2][3] 0.141836492147 _pdbx_refine_tls.S[2][3]_esd ? _pdbx_refine_tls.S[3][1] 0.275552561753 _pdbx_refine_tls.S[3][1]_esd ? _pdbx_refine_tls.S[3][2] -1.07728979114 _pdbx_refine_tls.S[3][2]_esd ? _pdbx_refine_tls.S[3][3] -0.0758734571294 _pdbx_refine_tls.S[3][3]_esd ? # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 1 _pdbx_refine_tls_group.beg_PDB_ins_code ? _pdbx_refine_tls_group.end_label_asym_id J _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id S _pdbx_refine_tls_group.end_auth_seq_id 20 _pdbx_refine_tls_group.end_PDB_ins_code ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details all # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A1AB3 C6 C Y N 1 A1AB3 C5 C Y N 2 A1AB3 C4 C Y N 3 A1AB3 C3 C Y N 4 A1AB3 C2 C Y N 5 A1AB3 C1 C N N 6 A1AB3 C7 C Y N 7 A1AB3 C10 C Y N 8 A1AB3 C11 C Y N 9 A1AB3 C12 C Y N 10 A1AB3 C13 C Y N 11 A1AB3 C14 C Y N 12 A1AB3 C8 C Y N 13 A1AB3 C9 C Y N 14 A1AB3 C15 C N N 15 A1AB3 C16 C Y N 16 A1AB3 C17 C Y N 17 A1AB3 N1 N N N 18 A1AB3 N2 N N N 19 A1AB3 N3 N Y N 20 A1AB3 N4 N N N 21 A1AB3 N5 N N N 22 A1AB3 N6 N Y N 23 A1AB3 O1 O Y N 24 A1AB3 S1 S Y N 25 A1AB3 H6 H N N 26 A1AB3 H5 H N N 27 A1AB3 H9 H N N 28 A1AB3 H10 H N N 29 A1AB3 H7 H N N 30 A1AB3 H8 H N N 31 A1AB3 H16 H N N 32 A1AB3 H2 H N N 33 A1AB3 H1 H N N 34 A1AB3 H4 H N N 35 A1AB3 H12 H N N 36 A1AB3 H11 H N N 37 A1AB3 H13 H N N 38 A1AB3 H15 H N N 39 CA CA CA N N 40 DA OP3 O N N 41 DA P P N N 42 DA OP1 O N N 43 DA OP2 O N N 44 DA "O5'" O N N 45 DA "C5'" C N N 46 DA "C4'" C N R 47 DA "O4'" O N N 48 DA "C3'" C N S 49 DA "O3'" O N N 50 DA "C2'" C N N 51 DA "C1'" C N R 52 DA N9 N Y N 53 DA C8 C Y N 54 DA N7 N Y N 55 DA C5 C Y N 56 DA C6 C Y N 57 DA N6 N N N 58 DA N1 N Y N 59 DA C2 C Y N 60 DA N3 N Y N 61 DA C4 C Y N 62 DA HOP3 H N N 63 DA HOP2 H N N 64 DA "H5'" H N N 65 DA "H5''" H N N 66 DA "H4'" H N N 67 DA "H3'" H N N 68 DA "HO3'" H N N 69 DA "H2'" H N N 70 DA "H2''" H N N 71 DA "H1'" H N N 72 DA H8 H N N 73 DA H61 H N N 74 DA H62 H N N 75 DA H2 H N N 76 DC OP3 O N N 77 DC P P N N 78 DC OP1 O N N 79 DC OP2 O N N 80 DC "O5'" O N N 81 DC "C5'" C N N 82 DC "C4'" C N R 83 DC "O4'" O N N 84 DC "C3'" C N S 85 DC "O3'" O N N 86 DC "C2'" C N N 87 DC "C1'" C N R 88 DC N1 N N N 89 DC C2 C N N 90 DC O2 O N N 91 DC N3 N N N 92 DC C4 C N N 93 DC N4 N N N 94 DC C5 C N N 95 DC C6 C N N 96 DC HOP3 H N N 97 DC HOP2 H N N 98 DC "H5'" H N N 99 DC "H5''" H N N 100 DC "H4'" H N N 101 DC "H3'" H N N 102 DC "HO3'" H N N 103 DC "H2'" H N N 104 DC "H2''" H N N 105 DC "H1'" H N N 106 DC H41 H N N 107 DC H42 H N N 108 DC H5 H N N 109 DC H6 H N N 110 DG OP3 O N N 111 DG P P N N 112 DG OP1 O N N 113 DG OP2 O N N 114 DG "O5'" O N N 115 DG "C5'" C N N 116 DG "C4'" C N R 117 DG "O4'" O N N 118 DG "C3'" C N S 119 DG "O3'" O N N 120 DG "C2'" C N N 121 DG "C1'" C N R 122 DG N9 N Y N 123 DG C8 C Y N 124 DG N7 N Y N 125 DG C5 C Y N 126 DG C6 C N N 127 DG O6 O N N 128 DG N1 N N N 129 DG C2 C N N 130 DG N2 N N N 131 DG N3 N N N 132 DG C4 C Y N 133 DG HOP3 H N N 134 DG HOP2 H N N 135 DG "H5'" H N N 136 DG "H5''" H N N 137 DG "H4'" H N N 138 DG "H3'" H N N 139 DG "HO3'" H N N 140 DG "H2'" H N N 141 DG "H2''" H N N 142 DG "H1'" H N N 143 DG H8 H N N 144 DG H1 H N N 145 DG H21 H N N 146 DG H22 H N N 147 DT OP3 O N N 148 DT P P N N 149 DT OP1 O N N 150 DT OP2 O N N 151 DT "O5'" O N N 152 DT "C5'" C N N 153 DT "C4'" C N R 154 DT "O4'" O N N 155 DT "C3'" C N S 156 DT "O3'" O N N 157 DT "C2'" C N N 158 DT "C1'" C N R 159 DT N1 N N N 160 DT C2 C N N 161 DT O2 O N N 162 DT N3 N N N 163 DT C4 C N N 164 DT O4 O N N 165 DT C5 C N N 166 DT C7 C N N 167 DT C6 C N N 168 DT HOP3 H N N 169 DT HOP2 H N N 170 DT "H5'" H N N 171 DT "H5''" H N N 172 DT "H4'" H N N 173 DT "H3'" H N N 174 DT "HO3'" H N N 175 DT "H2'" H N N 176 DT "H2''" H N N 177 DT "H1'" H N N 178 DT H3 H N N 179 DT H71 H N N 180 DT H72 H N N 181 DT H73 H N N 182 DT H6 H N N 183 HOH O O N N 184 HOH H1 H N N 185 HOH H2 H N N 186 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1AB3 N1 C1 sing N N 1 A1AB3 C1 N2 doub N N 2 A1AB3 C1 C2 sing N N 3 A1AB3 C2 C3 doub Y N 4 A1AB3 C3 C4 sing Y N 5 A1AB3 C4 C5 doub Y N 6 A1AB3 C5 N3 sing Y N 7 A1AB3 N3 C6 doub Y N 8 A1AB3 C6 C7 sing N N 9 A1AB3 C7 C8 doub Y N 10 A1AB3 C8 C9 sing Y N 11 A1AB3 C9 C10 doub Y N 12 A1AB3 C10 C11 sing N N 13 A1AB3 C11 C12 doub Y N 14 A1AB3 C12 C13 sing Y N 15 A1AB3 C13 C14 doub Y N 16 A1AB3 C14 C15 sing N N 17 A1AB3 C15 N4 sing N N 18 A1AB3 C15 N5 doub N N 19 A1AB3 C14 S1 sing Y N 20 A1AB3 C10 O1 sing Y N 21 A1AB3 C6 N6 sing Y N 22 A1AB3 N6 C16 sing Y N 23 A1AB3 C16 C17 doub Y N 24 A1AB3 C2 C17 sing Y N 25 A1AB3 C5 C16 sing Y N 26 A1AB3 C7 O1 sing Y N 27 A1AB3 C11 S1 sing Y N 28 A1AB3 C4 H6 sing N N 29 A1AB3 C3 H5 sing N N 30 A1AB3 C12 H9 sing N N 31 A1AB3 C13 H10 sing N N 32 A1AB3 C8 H7 sing N N 33 A1AB3 C9 H8 sing N N 34 A1AB3 C17 H16 sing N N 35 A1AB3 N1 H2 sing N N 36 A1AB3 N1 H1 sing N N 37 A1AB3 N2 H4 sing N N 38 A1AB3 N4 H12 sing N N 39 A1AB3 N4 H11 sing N N 40 A1AB3 N5 H13 sing N N 41 A1AB3 N6 H15 sing N N 42 DA OP3 P sing N N 43 DA OP3 HOP3 sing N N 44 DA P OP1 doub N N 45 DA P OP2 sing N N 46 DA P "O5'" sing N N 47 DA OP2 HOP2 sing N N 48 DA "O5'" "C5'" sing N N 49 DA "C5'" "C4'" sing N N 50 DA "C5'" "H5'" sing N N 51 DA "C5'" "H5''" sing N N 52 DA "C4'" "O4'" sing N N 53 DA "C4'" "C3'" sing N N 54 DA "C4'" "H4'" sing N N 55 DA "O4'" "C1'" sing N N 56 DA "C3'" "O3'" sing N N 57 DA "C3'" "C2'" sing N N 58 DA "C3'" "H3'" sing N N 59 DA "O3'" "HO3'" sing N N 60 DA "C2'" "C1'" sing N N 61 DA "C2'" "H2'" sing N N 62 DA "C2'" "H2''" sing N N 63 DA "C1'" N9 sing N N 64 DA "C1'" "H1'" sing N N 65 DA N9 C8 sing Y N 66 DA N9 C4 sing Y N 67 DA C8 N7 doub Y N 68 DA C8 H8 sing N N 69 DA N7 C5 sing Y N 70 DA C5 C6 sing Y N 71 DA C5 C4 doub Y N 72 DA C6 N6 sing N N 73 DA C6 N1 doub Y N 74 DA N6 H61 sing N N 75 DA N6 H62 sing N N 76 DA N1 C2 sing Y N 77 DA C2 N3 doub Y N 78 DA C2 H2 sing N N 79 DA N3 C4 sing Y N 80 DC OP3 P sing N N 81 DC OP3 HOP3 sing N N 82 DC P OP1 doub N N 83 DC P OP2 sing N N 84 DC P "O5'" sing N N 85 DC OP2 HOP2 sing N N 86 DC "O5'" "C5'" sing N N 87 DC "C5'" "C4'" sing N N 88 DC "C5'" "H5'" sing N N 89 DC "C5'" "H5''" sing N N 90 DC "C4'" "O4'" sing N N 91 DC "C4'" "C3'" sing N N 92 DC "C4'" "H4'" sing N N 93 DC "O4'" "C1'" sing N N 94 DC "C3'" "O3'" sing N N 95 DC "C3'" "C2'" sing N N 96 DC "C3'" "H3'" sing N N 97 DC "O3'" "HO3'" sing N N 98 DC "C2'" "C1'" sing N N 99 DC "C2'" "H2'" sing N N 100 DC "C2'" "H2''" sing N N 101 DC "C1'" N1 sing N N 102 DC "C1'" "H1'" sing N N 103 DC N1 C2 sing N N 104 DC N1 C6 sing N N 105 DC C2 O2 doub N N 106 DC C2 N3 sing N N 107 DC N3 C4 doub N N 108 DC C4 N4 sing N N 109 DC C4 C5 sing N N 110 DC N4 H41 sing N N 111 DC N4 H42 sing N N 112 DC C5 C6 doub N N 113 DC C5 H5 sing N N 114 DC C6 H6 sing N N 115 DG OP3 P sing N N 116 DG OP3 HOP3 sing N N 117 DG P OP1 doub N N 118 DG P OP2 sing N N 119 DG P "O5'" sing N N 120 DG OP2 HOP2 sing N N 121 DG "O5'" "C5'" sing N N 122 DG "C5'" "C4'" sing N N 123 DG "C5'" "H5'" sing N N 124 DG "C5'" "H5''" sing N N 125 DG "C4'" "O4'" sing N N 126 DG "C4'" "C3'" sing N N 127 DG "C4'" "H4'" sing N N 128 DG "O4'" "C1'" sing N N 129 DG "C3'" "O3'" sing N N 130 DG "C3'" "C2'" sing N N 131 DG "C3'" "H3'" sing N N 132 DG "O3'" "HO3'" sing N N 133 DG "C2'" "C1'" sing N N 134 DG "C2'" "H2'" sing N N 135 DG "C2'" "H2''" sing N N 136 DG "C1'" N9 sing N N 137 DG "C1'" "H1'" sing N N 138 DG N9 C8 sing Y N 139 DG N9 C4 sing Y N 140 DG C8 N7 doub Y N 141 DG C8 H8 sing N N 142 DG N7 C5 sing Y N 143 DG C5 C6 sing N N 144 DG C5 C4 doub Y N 145 DG C6 O6 doub N N 146 DG C6 N1 sing N N 147 DG N1 C2 sing N N 148 DG N1 H1 sing N N 149 DG C2 N2 sing N N 150 DG C2 N3 doub N N 151 DG N2 H21 sing N N 152 DG N2 H22 sing N N 153 DG N3 C4 sing N N 154 DT OP3 P sing N N 155 DT OP3 HOP3 sing N N 156 DT P OP1 doub N N 157 DT P OP2 sing N N 158 DT P "O5'" sing N N 159 DT OP2 HOP2 sing N N 160 DT "O5'" "C5'" sing N N 161 DT "C5'" "C4'" sing N N 162 DT "C5'" "H5'" sing N N 163 DT "C5'" "H5''" sing N N 164 DT "C4'" "O4'" sing N N 165 DT "C4'" "C3'" sing N N 166 DT "C4'" "H4'" sing N N 167 DT "O4'" "C1'" sing N N 168 DT "C3'" "O3'" sing N N 169 DT "C3'" "C2'" sing N N 170 DT "C3'" "H3'" sing N N 171 DT "O3'" "HO3'" sing N N 172 DT "C2'" "C1'" sing N N 173 DT "C2'" "H2'" sing N N 174 DT "C2'" "H2''" sing N N 175 DT "C1'" N1 sing N N 176 DT "C1'" "H1'" sing N N 177 DT N1 C2 sing N N 178 DT N1 C6 sing N N 179 DT C2 O2 doub N N 180 DT C2 N3 sing N N 181 DT N3 C4 sing N N 182 DT N3 H3 sing N N 183 DT C4 O4 doub N N 184 DT C4 C5 sing N N 185 DT C5 C7 sing N N 186 DT C5 C6 doub N N 187 DT C7 H71 sing N N 188 DT C7 H72 sing N N 189 DT C7 H73 sing N N 190 DT C6 H6 sing N N 191 HOH O H1 sing N N 192 HOH O H2 sing N N 193 # _ndb_struct_conf_na.entry_id 8VOE _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 A DC 16 17_435 0.054 -0.064 -0.074 -0.815 -8.433 -0.817 1 A_DG1:DC16_A A 1 ? A 16 ? 19 1 1 A DC 2 1_555 A DG 15 17_435 0.120 -0.134 0.274 -8.712 -8.900 -2.838 2 A_DC2:DG15_A A 2 ? A 15 ? 19 1 1 A DT 3 1_555 A DA 14 17_435 0.036 -0.014 0.249 -8.508 -21.118 2.247 3 A_DT3:DA14_A A 3 ? A 14 ? 20 1 1 A DG 4 1_555 A DC 13 17_435 -0.399 -0.097 -0.196 -8.148 -10.123 -1.840 4 A_DG4:DC13_A A 4 ? A 13 ? 19 1 1 A DG 5 1_555 A DC 12 17_435 0.228 -0.106 -0.107 -2.330 -14.452 -0.254 5 A_DG5:DC12_A A 5 ? A 12 ? 19 1 1 A DA 6 1_555 A DT 11 17_435 0.172 -0.086 0.277 -5.221 -17.635 -3.987 6 A_DA6:DT11_A A 6 ? A 11 ? 20 1 1 A DT 7 1_555 A DA 10 17_435 0.166 -0.126 0.185 -10.450 -13.981 -2.877 7 A_DT7:DA10_A A 7 ? A 10 ? 20 1 1 A DT 8 1_555 A DA 9 17_435 -0.099 -0.242 0.069 -5.480 -9.254 2.340 8 A_DT8:DA9_A A 8 ? A 9 ? 20 1 1 A DA 9 1_555 A DT 8 17_435 0.099 -0.242 0.069 5.480 -9.254 2.340 9 A_DA9:DT8_A A 9 ? A 8 ? 20 1 1 A DA 10 1_555 A DT 7 17_435 -0.166 -0.126 0.185 10.450 -13.981 -2.877 10 A_DA10:DT7_A A 10 ? A 7 ? 20 1 1 A DT 11 1_555 A DA 6 17_435 -0.172 -0.086 0.277 5.221 -17.635 -3.987 11 A_DT11:DA6_A A 11 ? A 6 ? 20 1 1 A DC 12 1_555 A DG 5 17_435 -0.228 -0.106 -0.107 2.330 -14.452 -0.254 12 A_DC12:DG5_A A 12 ? A 5 ? 19 1 1 A DC 13 1_555 A DG 4 17_435 0.399 -0.097 -0.196 8.148 -10.123 -1.840 13 A_DC13:DG4_A A 13 ? A 4 ? 19 1 1 A DA 14 1_555 A DT 3 17_435 -0.036 -0.014 0.249 8.508 -21.118 2.247 14 A_DA14:DT3_A A 14 ? A 3 ? 20 1 1 A DG 15 1_555 A DC 2 17_435 -0.120 -0.134 0.274 8.712 -8.900 -2.838 15 A_DG15:DC2_A A 15 ? A 2 ? 19 1 1 A DC 16 1_555 A DG 1 17_435 -0.054 -0.064 -0.074 0.815 -8.433 -0.817 16 A_DC16:DG1_A A 16 ? A 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 A DC 16 17_435 A DC 2 1_555 A DG 15 17_435 -1.135 -0.691 3.419 -5.384 -1.074 32.322 -1.025 1.014 3.576 -1.912 9.585 32.772 1 AA_DG1DC2:DG15DC16_AA A 1 ? A 16 ? A 2 ? A 15 ? 1 A DC 2 1_555 A DG 15 17_435 A DT 3 1_555 A DA 14 17_435 -0.470 -0.122 3.273 0.791 6.107 29.699 -1.459 1.058 3.172 11.755 -1.523 30.316 2 AA_DC2DT3:DA14DG15_AA A 2 ? A 15 ? A 3 ? A 14 ? 1 A DT 3 1_555 A DA 14 17_435 A DG 4 1_555 A DC 13 17_435 0.132 1.391 3.399 3.332 0.696 41.691 1.872 0.179 3.421 0.976 -4.673 41.824 3 AA_DT3DG4:DC13DA14_AA A 3 ? A 14 ? A 4 ? A 13 ? 1 A DG 4 1_555 A DC 13 17_435 A DG 5 1_555 A DC 12 17_435 0.756 0.560 3.299 -0.491 7.895 26.897 -0.768 -1.682 3.312 16.524 1.028 28.016 4 AA_DG4DG5:DC12DC13_AA A 4 ? A 13 ? A 5 ? A 12 ? 1 A DG 5 1_555 A DC 12 17_435 A DA 6 1_555 A DT 11 17_435 -1.456 0.695 3.375 -9.109 -0.598 41.825 1.018 1.014 3.591 -0.826 12.580 42.766 5 AA_DG5DA6:DT11DC12_AA A 5 ? A 12 ? A 6 ? A 11 ? 1 A DA 6 1_555 A DT 11 17_435 A DT 7 1_555 A DA 10 17_435 0.252 -0.322 3.559 0.383 -0.220 30.332 -0.566 -0.398 3.564 -0.421 -0.732 30.335 6 AA_DA6DT7:DA10DT11_AA A 6 ? A 11 ? A 7 ? A 10 ? 1 A DT 7 1_555 A DA 10 17_435 A DT 8 1_555 A DA 9 17_435 0.540 0.415 3.274 3.774 2.885 31.362 0.220 -0.282 3.339 5.298 -6.932 31.710 7 AA_DT7DT8:DA9DA10_AA A 7 ? A 10 ? A 8 ? A 9 ? 1 A DT 8 1_555 A DA 9 17_435 A DA 9 1_555 A DT 8 17_435 0.000 1.611 3.183 0.000 2.398 38.940 2.126 0.000 3.273 3.594 0.000 39.011 8 AA_DT8DA9:DT8DA9_AA A 8 ? A 9 ? A 9 ? A 8 ? 1 A DA 9 1_555 A DT 8 17_435 A DA 10 1_555 A DT 7 17_435 -0.540 0.415 3.274 -3.774 2.885 31.362 0.220 0.282 3.339 5.298 6.932 31.710 9 AA_DA9DA10:DT7DT8_AA A 9 ? A 8 ? A 10 ? A 7 ? 1 A DA 10 1_555 A DT 7 17_435 A DT 11 1_555 A DA 6 17_435 -0.252 -0.322 3.559 -0.383 -0.220 30.332 -0.566 0.398 3.564 -0.421 0.732 30.335 10 AA_DA10DT11:DA6DT7_AA A 10 ? A 7 ? A 11 ? A 6 ? 1 A DT 11 1_555 A DA 6 17_435 A DC 12 1_555 A DG 5 17_435 1.456 0.695 3.375 9.109 -0.598 41.825 1.018 -1.014 3.591 -0.826 -12.580 42.766 11 AA_DT11DC12:DG5DA6_AA A 11 ? A 6 ? A 12 ? A 5 ? 1 A DC 12 1_555 A DG 5 17_435 A DC 13 1_555 A DG 4 17_435 -0.756 0.560 3.299 0.491 7.895 26.897 -0.768 1.682 3.312 16.524 -1.028 28.016 12 AA_DC12DC13:DG4DG5_AA A 12 ? A 5 ? A 13 ? A 4 ? 1 A DC 13 1_555 A DG 4 17_435 A DA 14 1_555 A DT 3 17_435 -0.132 1.391 3.399 -3.332 0.696 41.691 1.872 -0.179 3.421 0.976 4.673 41.824 13 AA_DC13DA14:DT3DG4_AA A 13 ? A 4 ? A 14 ? A 3 ? 1 A DA 14 1_555 A DT 3 17_435 A DG 15 1_555 A DC 2 17_435 0.470 -0.122 3.273 -0.791 6.107 29.699 -1.459 -1.058 3.172 11.755 1.523 30.316 14 AA_DA14DG15:DC2DT3_AA A 14 ? A 3 ? A 15 ? A 2 ? 1 A DG 15 1_555 A DC 2 17_435 A DC 16 1_555 A DG 1 17_435 1.135 -0.691 3.419 5.384 -1.074 32.322 -1.025 -1.014 3.576 -1.912 -9.585 32.772 15 AA_DG15DC16:DG1DC2_AA A 15 ? A 2 ? A 16 ? A 1 ? # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number GM111749 _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 8V5J _pdbx_initial_refinement_model.details ? # _space_group.name_H-M_alt 'R 3 2 :H' _space_group.name_Hall ;R 3 2" ; _space_group.IT_number 155 _space_group.crystal_system trigonal _space_group.id 1 # _atom_sites.entry_id 8VOE _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 0.026236 _atom_sites.fract_transf_matrix[1][2] 0.015147 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.030294 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006135 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? CA ? ? 16.26893 3.65395 ? ? 3.58509 77.28589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? H ? ? 0.51345 0.48472 ? ? 24.73122 6.32584 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 4.49882 3.47563 ? ? 15.80542 1.70748 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? P ? ? 9.51135 5.44231 ? ? 1.42069 35.72801 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? S ? ? 9.55732 6.39887 ? ? 1.23737 29.19336 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_ # loop_ #