HEADER RNA 17-JAN-24 8VPV TITLE CLASS III PREQ1 RIBOSWITCH MUTANT DELTA84 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (101-MER); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: FAECALIBACTERIUM PRAUSNITZII; SOURCE 4 ORGANISM_TAXID: 853 KEYWDS PREQ1, QUEUOSINE, THREE-WAY HELICAL JUNCTION, APTAMER, METABOLITE, KEYWDS 2 TRANSLATIONAL REGULATION, HL(OUT)-TYPE PSEUDOKNOT, RIBOSWITCH, RNA EXPDTA X-RAY DIFFRACTION AUTHOR Y.SRIVASTAVA,J.L.JENKINS,J.E.WEDEKIND REVDAT 2 11-DEC-24 8VPV 1 JRNL REVDAT 1 02-OCT-24 8VPV 0 JRNL AUTH Y.SRIVASTAVA,O.AKINYEMI,T.C.ROHE,E.M.PRITCHETT,C.D.BAKER, JRNL AUTH 2 A.SHARMA,J.L.JENKINS,D.H.MATHEWS,J.E.WEDEKIND JRNL TITL TWO RIBOSWITCH CLASSES THAT SHARE A COMMON LIGAND-BINDING JRNL TITL 2 FOLD SHOW MAJOR DIFFERENCES IN THE ABILITY TO ACCOMMODATE JRNL TITL 3 MUTATIONS. JRNL REF NUCLEIC ACIDS RES. V. 52 13152 2024 JRNL REFN ESSN 1362-4962 JRNL PMID 39413212 JRNL DOI 10.1093/NAR/GKAE886 REMARK 2 REMARK 2 RESOLUTION. 3.04 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.04 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 11127 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.253 REMARK 3 R VALUE (WORKING SET) : 0.248 REMARK 3 FREE R VALUE : 0.300 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.070 REMARK 3 FREE R VALUE TEST SET COUNT : 1121 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.2900 - 6.0800 0.94 1384 150 0.1824 0.2410 REMARK 3 2 6.0700 - 4.8300 0.97 1307 146 0.2623 0.3081 REMARK 3 3 4.8300 - 4.2200 0.98 1298 144 0.2647 0.3057 REMARK 3 4 4.2200 - 3.8300 0.97 1258 142 0.2951 0.3328 REMARK 3 5 3.8300 - 3.5600 0.94 1214 139 0.3591 0.4355 REMARK 3 6 3.5600 - 3.3500 0.92 1181 135 0.4039 0.4431 REMARK 3 7 3.3500 - 3.1800 0.94 1179 131 0.3841 0.4297 REMARK 3 8 3.1800 - 3.0400 0.93 1185 134 0.4432 0.4127 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.530 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 42.740 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.001 2376 REMARK 3 ANGLE : 0.333 3699 REMARK 3 CHIRALITY : 0.018 494 REMARK 3 PLANARITY : 0.001 100 REMARK 3 DIHEDRAL : 13.575 1187 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.6947 31.9447 112.7623 REMARK 3 T TENSOR REMARK 3 T11: 2.0638 T22: 1.2620 REMARK 3 T33: 0.8274 T12: 0.3849 REMARK 3 T13: -0.1739 T23: -0.0408 REMARK 3 L TENSOR REMARK 3 L11: 3.7857 L22: 3.0321 REMARK 3 L33: 4.1483 L12: 0.1212 REMARK 3 L13: 1.8821 L23: -3.0485 REMARK 3 S TENSOR REMARK 3 S11: -0.3959 S12: 0.7860 S13: -0.3235 REMARK 3 S21: -1.6032 S22: 0.7543 S23: -0.2266 REMARK 3 S31: -1.2033 S32: 1.4671 S33: 1.0304 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.0323 33.3130 111.9950 REMARK 3 T TENSOR REMARK 3 T11: 1.3739 T22: 1.3306 REMARK 3 T33: 0.7497 T12: 0.4547 REMARK 3 T13: -0.0247 T23: -0.0744 REMARK 3 L TENSOR REMARK 3 L11: 4.3842 L22: 4.2084 REMARK 3 L33: 7.0461 L12: 2.5628 REMARK 3 L13: -0.5472 L23: -3.2955 REMARK 3 S TENSOR REMARK 3 S11: -0.1964 S12: 0.9607 S13: 0.4948 REMARK 3 S21: -0.1449 S22: 0.3635 S23: 0.5852 REMARK 3 S31: -0.7938 S32: 0.3294 S33: 0.1924 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 23 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.8119 33.2027 139.9806 REMARK 3 T TENSOR REMARK 3 T11: 2.3147 T22: 2.6986 REMARK 3 T33: 0.9253 T12: 0.6770 REMARK 3 T13: -0.0924 T23: -0.4342 REMARK 3 L TENSOR REMARK 3 L11: 1.9124 L22: 8.9370 REMARK 3 L33: 5.5867 L12: -0.0155 REMARK 3 L13: -0.3649 L23: -7.0009 REMARK 3 S TENSOR REMARK 3 S11: -0.6543 S12: -0.3980 S13: 0.6882 REMARK 3 S21: 1.9880 S22: 2.5770 S23: 0.8063 REMARK 3 S31: -2.3711 S32: -3.7629 S33: 8.1163 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 31 THROUGH 40 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.6945 27.9799 158.1315 REMARK 3 T TENSOR REMARK 3 T11: 3.1045 T22: 3.8343 REMARK 3 T33: 2.1715 T12: 0.4315 REMARK 3 T13: 0.0102 T23: 0.0323 REMARK 3 L TENSOR REMARK 3 L11: 3.1350 L22: 4.2847 REMARK 3 L33: 7.7599 L12: 2.8045 REMARK 3 L13: -0.3254 L23: -3.9885 REMARK 3 S TENSOR REMARK 3 S11: 1.1388 S12: 0.5783 S13: 0.3833 REMARK 3 S21: 4.1286 S22: 0.6123 S23: -1.4793 REMARK 3 S31: 1.5497 S32: -0.9009 S33: -1.0883 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 41 THROUGH 46 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.4007 27.0478 143.6616 REMARK 3 T TENSOR REMARK 3 T11: 1.5836 T22: 1.4201 REMARK 3 T33: 1.0509 T12: 0.4460 REMARK 3 T13: -0.0291 T23: 0.1256 REMARK 3 L TENSOR REMARK 3 L11: 3.0206 L22: 7.7846 REMARK 3 L33: 3.8100 L12: -2.7979 REMARK 3 L13: -0.0861 L23: -4.3708 REMARK 3 S TENSOR REMARK 3 S11: -1.9414 S12: -1.9172 S13: 0.8349 REMARK 3 S21: -0.1192 S22: 0.3391 S23: -1.6957 REMARK 3 S31: 0.5408 S32: 0.2779 S33: 1.3410 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 47 THROUGH 51 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.7077 35.4073 128.0716 REMARK 3 T TENSOR REMARK 3 T11: 1.9923 T22: 2.6987 REMARK 3 T33: 0.8579 T12: 0.5169 REMARK 3 T13: -0.1476 T23: -0.1860 REMARK 3 L TENSOR REMARK 3 L11: 0.0450 L22: 8.9347 REMARK 3 L33: 0.8171 L12: 0.6687 REMARK 3 L13: 0.2030 L23: 2.6983 REMARK 3 S TENSOR REMARK 3 S11: 0.0976 S12: -0.1485 S13: 0.1891 REMARK 3 S21: 3.6902 S22: -1.1724 S23: -0.5300 REMARK 3 S31: 1.0938 S32: -0.7702 S33: 0.0627 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 52 THROUGH 56 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.3015 39.3724 106.3297 REMARK 3 T TENSOR REMARK 3 T11: 1.6184 T22: 2.5196 REMARK 3 T33: 0.5630 T12: 0.3330 REMARK 3 T13: 0.4895 T23: 0.0734 REMARK 3 L TENSOR REMARK 3 L11: 0.0096 L22: 0.1056 REMARK 3 L33: 0.6532 L12: 0.0312 REMARK 3 L13: -0.0779 L23: -0.2695 REMARK 3 S TENSOR REMARK 3 S11: -0.0314 S12: 0.3372 S13: -0.1883 REMARK 3 S21: -0.2537 S22: 0.0680 S23: 0.1104 REMARK 3 S31: 0.0733 S32: -0.4497 S33: 0.7336 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 57 THROUGH 63 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.7250 51.8087 109.7230 REMARK 3 T TENSOR REMARK 3 T11: 1.4126 T22: 1.1205 REMARK 3 T33: 0.4262 T12: 0.0377 REMARK 3 T13: -0.0807 T23: -0.1307 REMARK 3 L TENSOR REMARK 3 L11: 2.9609 L22: 1.5179 REMARK 3 L33: 6.3167 L12: -0.0836 REMARK 3 L13: 0.5783 L23: 3.0504 REMARK 3 S TENSOR REMARK 3 S11: -0.4974 S12: -0.3608 S13: 0.6614 REMARK 3 S21: -0.9905 S22: -0.0539 S23: 0.0318 REMARK 3 S31: -2.0290 S32: 0.0583 S33: -0.4634 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 64 THROUGH 72 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.2278 59.2637 101.9735 REMARK 3 T TENSOR REMARK 3 T11: 2.9282 T22: 1.5820 REMARK 3 T33: 0.0188 T12: 0.1979 REMARK 3 T13: 0.1360 T23: -0.1466 REMARK 3 L TENSOR REMARK 3 L11: 0.6745 L22: 0.2734 REMARK 3 L33: 2.3815 L12: 0.0199 REMARK 3 L13: -0.1244 L23: -0.3864 REMARK 3 S TENSOR REMARK 3 S11: 0.2890 S12: 0.3054 S13: 0.3839 REMARK 3 S21: 0.2202 S22: 0.1453 S23: -0.2306 REMARK 3 S31: -1.1840 S32: -0.2464 S33: 0.4193 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 73 THROUGH 79 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.6551 47.4000 111.6901 REMARK 3 T TENSOR REMARK 3 T11: 1.9807 T22: 1.8938 REMARK 3 T33: -0.1598 T12: 0.4468 REMARK 3 T13: 0.2585 T23: -0.2658 REMARK 3 L TENSOR REMARK 3 L11: 2.5287 L22: 2.0731 REMARK 3 L33: 4.0680 L12: -1.1896 REMARK 3 L13: -1.0241 L23: 1.4307 REMARK 3 S TENSOR REMARK 3 S11: -0.3692 S12: 0.1920 S13: -0.4105 REMARK 3 S21: 0.0680 S22: 0.6426 S23: -0.1149 REMARK 3 S31: 0.4282 S32: 0.2038 S33: 2.1562 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 80 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.0779 31.9943 109.7817 REMARK 3 T TENSOR REMARK 3 T11: 2.6436 T22: 2.0414 REMARK 3 T33: 1.6586 T12: 0.0073 REMARK 3 T13: -0.7299 T23: 0.7168 REMARK 3 L TENSOR REMARK 3 L11: 4.6901 L22: 9.6159 REMARK 3 L33: 9.4305 L12: 6.7113 REMARK 3 L13: -3.2322 L23: -4.9636 REMARK 3 S TENSOR REMARK 3 S11: -2.9573 S12: -2.3882 S13: -1.1743 REMARK 3 S21: -1.9070 S22: 2.8110 S23: 1.5808 REMARK 3 S31: 1.9896 S32: -1.0819 S33: -0.0175 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 85 THROUGH 94 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.1390 38.1613 97.1426 REMARK 3 T TENSOR REMARK 3 T11: 2.0913 T22: 1.7161 REMARK 3 T33: 0.8696 T12: 0.3643 REMARK 3 T13: 0.1990 T23: 0.1027 REMARK 3 L TENSOR REMARK 3 L11: 7.5499 L22: 6.4037 REMARK 3 L33: 2.8139 L12: -0.3296 REMARK 3 L13: -2.4696 L23: 2.7876 REMARK 3 S TENSOR REMARK 3 S11: -0.2561 S12: -0.4143 S13: 1.6153 REMARK 3 S21: -1.6038 S22: 0.7564 S23: 0.2161 REMARK 3 S31: -2.6085 S32: -0.0852 S33: -0.4827 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 95 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): 63.7774 25.8668 93.7691 REMARK 3 T TENSOR REMARK 3 T11: 2.4208 T22: 3.3995 REMARK 3 T33: 0.8506 T12: -0.5314 REMARK 3 T13: 0.4240 T23: 0.2681 REMARK 3 L TENSOR REMARK 3 L11: 0.4139 L22: 3.1513 REMARK 3 L33: 4.1294 L12: -0.1782 REMARK 3 L13: -0.9629 L23: -2.2196 REMARK 3 S TENSOR REMARK 3 S11: -0.7664 S12: 0.4161 S13: -0.3957 REMARK 3 S21: -1.4055 S22: -0.8129 S23: -0.9547 REMARK 3 S31: 1.6326 S32: 2.5422 S33: -0.1502 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8VPV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JAN-24. REMARK 100 THE DEPOSITION ID IS D_1000280703. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-DEC-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11152 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.040 REMARK 200 RESOLUTION RANGE LOW (A) : 39.290 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 9.100 REMARK 200 R MERGE (I) : 0.11300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.04 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.10 REMARK 200 R MERGE FOR SHELL (I) : 0.66200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.5 M SODIUM MALONATE, PH 7, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 188.00467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 94.00233 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 141.00350 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 47.00117 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 235.00583 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 188.00467 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 94.00233 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 47.00117 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 141.00350 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 235.00583 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 C A 34 P OP1 OP2 O5' C5' C4' O4' REMARK 470 C A 34 C3' C2' O2' C1' N1 C2 O2 REMARK 470 C A 34 N3 C4 N4 C5 C6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HO2' U A 65 OP2 G A 67 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O2' C A 46 O2' G A 99 5565 1.92 REMARK 500 O2' G A 63 OP2 U A 92 7555 2.06 REMARK 500 O2' A A 6 O2' C A 21 12555 2.09 REMARK 500 REMARK 500 REMARK: NULL DBREF1 8VPV A 1 101 GB CP065381.1 DBREF2 8VPV A 2094528044 722729 722629 SEQADV 8VPV A GB 209452804 A 22643 DELETION SEQRES 1 A 100 GTP A G C A A C U U A G G A SEQRES 2 A 100 U U U U A G G C U C C C C SEQRES 3 A 100 G G C G U G U C U C G A A SEQRES 4 A 100 C C A U G C C G G G C C A SEQRES 5 A 100 A A C C C A U A G G G C U SEQRES 6 A 100 G G C G G U C C C U G U G SEQRES 7 A 100 C G G U C A A A U U C A U SEQRES 8 A 100 C C G C C G G A G MODRES 8VPV GTP A 1 G MODIFIED RESIDUE HET GTP A 1 41 HET PRF A 201 22 HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM PRF 7-DEAZA-7-AMINOMETHYL-GUANINE FORMUL 1 GTP C10 H16 N5 O14 P3 FORMUL 2 PRF C7 H9 N5 O FORMUL 3 HOH *(H2 O) LINK O3' GTP A 1 P A A 2 1555 1555 1.60 CRYST1 82.685 82.685 282.007 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012094 0.006983 0.000000 0.00000 SCALE2 0.000000 0.013965 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003546 0.00000 HETATM 1 PG GTP A 1 30.713 46.095 130.140 1.00310.63 P HETATM 2 O1G GTP A 1 31.214 45.845 128.737 1.00273.82 O1- HETATM 3 O2G GTP A 1 31.168 47.450 130.623 1.00294.37 O1- HETATM 4 O3G GTP A 1 31.254 45.034 131.069 1.00232.87 O HETATM 5 O3B GTP A 1 29.103 46.039 130.133 1.00332.45 O HETATM 6 PB GTP A 1 28.298 45.727 128.773 1.00332.06 P HETATM 7 O1B GTP A 1 26.872 45.358 129.109 1.00302.89 O1- HETATM 8 O2B GTP A 1 28.343 46.906 127.830 1.00266.95 O HETATM 9 O3A GTP A 1 29.038 44.446 128.140 1.00316.88 O HETATM 10 PA GTP A 1 28.330 43.615 126.956 1.00302.76 P HETATM 11 O1A GTP A 1 28.365 42.137 127.264 1.00269.64 O1- HETATM 12 O2A GTP A 1 26.916 44.095 126.728 1.00249.86 O HETATM 13 O5' GTP A 1 29.266 43.933 125.686 1.00274.23 O HETATM 14 C5' GTP A 1 30.379 43.116 125.401 1.00255.55 C HETATM 15 C4' GTP A 1 31.356 43.140 126.572 1.00248.83 C HETATM 16 O4' GTP A 1 30.938 42.231 127.572 1.00245.76 O HETATM 17 C3' GTP A 1 32.755 42.707 126.174 1.00223.98 C HETATM 18 O3' GTP A 1 33.578 43.800 125.837 1.00222.03 O HETATM 19 C2' GTP A 1 33.284 41.981 127.395 1.00187.35 C HETATM 20 O2' GTP A 1 34.158 42.813 128.126 1.00152.82 O HETATM 21 C1' GTP A 1 32.042 41.602 128.199 1.00166.07 C HETATM 22 N9 GTP A 1 31.839 40.140 128.182 1.00146.96 N HETATM 23 C8 GTP A 1 30.665 39.497 127.889 1.00190.34 C HETATM 24 N7 GTP A 1 30.868 38.163 127.981 1.00184.08 N HETATM 25 C5 GTP A 1 32.151 37.943 128.342 1.00153.06 C HETATM 26 C6 GTP A 1 32.871 36.778 128.577 1.00148.47 C HETATM 27 O6 GTP A 1 32.326 35.682 128.460 1.00160.86 O HETATM 28 N1 GTP A 1 34.200 36.860 128.941 1.00111.62 N HETATM 29 C2 GTP A 1 34.800 38.098 129.069 1.00149.99 C HETATM 30 N2 GTP A 1 36.080 38.188 129.419 1.00124.60 N HETATM 31 N3 GTP A 1 34.077 39.250 128.834 1.00115.37 N HETATM 32 C4 GTP A 1 32.772 39.176 128.478 1.00132.61 C HETATM 33 H4' GTP A 1 31.370 44.170 126.928 1.00299.14 H HETATM 34 H3' GTP A 1 32.747 42.083 125.280 1.00269.32 H HETATM 35 H2' GTP A 1 33.872 41.099 127.141 1.00225.37 H HETATM 36 HO2' GTP A 1 33.750 43.039 128.988 1.00183.93 H HETATM 37 H1' GTP A 1 32.163 41.922 129.234 1.00199.83 H HETATM 38 H8 GTP A 1 29.724 39.981 127.625 1.00228.96 H HETATM 39 HN1 GTP A 1 34.747 35.994 129.118 1.00134.49 H HETATM 40 HN21 GTP A 1 36.518 39.098 129.511 1.00150.06 H HETATM 41 HN22 GTP A 1 36.619 37.345 129.593 1.00150.06 H