HEADER SUGAR BINDING PROTEIN 21-JAN-24 8VRF TITLE SUCROSE-PHOSPHATE SYNTHASE-LIKE PROTEIN FROM LEISHMANIA MAJOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUCROSE-PHOSPHATE SYNTHASE-LIKE PROTEIN; COMPND 3 CHAIN: B, A; COMPND 4 EC: 2.4.1.14; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEISHMANIA MAJOR; SOURCE 3 ORGANISM_TAXID: 5664; SOURCE 4 GENE: LMJF_16_0950; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MANNOGEN SYNTHESIS, SUCROSE-PHOSPHATE SYNTHASE, LEISHMANIA MAJOR UDPG KEYWDS 2 COMPLEX, LMJF.16.0950, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.A.GORMAN,M.W.PARKER,M.J.MCCONVILLE REVDAT 1 13-AUG-25 8VRF 0 JRNL AUTH M.A.GORMAN,M.W.PARKER,M.J.MCCONVILLE JRNL TITL SUCROSE-PHOSPHATE SYNTHASE-LIKE PROTEIN FROM LEISHMANIA JRNL TITL 2 MAJOR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0425 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.08 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 98986 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5262 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.74 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.79 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7145 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.03 REMARK 3 BIN R VALUE (WORKING SET) : 0.2590 REMARK 3 BIN FREE R VALUE SET COUNT : 382 REMARK 3 BIN FREE R VALUE : 0.2890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7268 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 117 REMARK 3 SOLVENT ATOMS : 646 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.86000 REMARK 3 B22 (A**2) : 1.44000 REMARK 3 B33 (A**2) : -0.25000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.14000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.111 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.107 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.084 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.666 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7678 ; 0.008 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 7059 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10423 ; 1.637 ; 1.825 REMARK 3 BOND ANGLES OTHERS (DEGREES): 16328 ; 0.591 ; 1.760 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 931 ; 6.500 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 37 ; 7.938 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1265 ;12.830 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1116 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 9003 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1785 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3700 ; 2.173 ; 2.377 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3700 ; 2.165 ; 2.377 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4639 ; 2.958 ; 4.263 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4640 ; 2.959 ; 4.264 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3978 ; 3.071 ; 2.678 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3979 ; 3.070 ; 2.678 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 5785 ; 4.698 ; 4.766 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 8712 ; 5.734 ;24.060 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 8713 ; 5.733 ;24.060 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8VRF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JAN-24. REMARK 100 THE DEPOSITION ID IS D_1000281091. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-OCT-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.953733 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 104260 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.740 REMARK 200 RESOLUTION RANGE LOW (A) : 48.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.74 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.77 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.61200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THICK RODS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 26% PEG 3350, 200 MM MAGNESIUM REMARK 280 CHLORIDE, 1MM UDPG, PROTEIN CRYSTAL SEEDS, PH 5.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 65.02850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.35450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 65.02850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 46.35450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 SER B 76 REMARK 465 VAL B 77 REMARK 465 GLY B 78 REMARK 465 PRO B 79 REMARK 465 GLN B 80 REMARK 465 SER B 81 REMARK 465 SER B 82 REMARK 465 LYS B 464 REMARK 465 MET A 1 REMARK 465 SER A 76 REMARK 465 VAL A 77 REMARK 465 GLY A 78 REMARK 465 PRO A 79 REMARK 465 GLN A 80 REMARK 465 SER A 81 REMARK 465 LYS A 464 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 883 O HOH B 927 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 219 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B 219 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG A 294 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS B 126 162.93 69.83 REMARK 500 CYS B 127 38.79 -99.58 REMARK 500 PHE B 128 -115.73 -131.50 REMARK 500 GLU B 172 -5.58 82.36 REMARK 500 LYS B 176 -43.29 -143.96 REMARK 500 SER B 190 -150.26 -148.20 REMARK 500 LEU B 251 -103.63 -104.14 REMARK 500 ASP B 309 19.19 57.30 REMARK 500 PRO B 365 47.75 -86.74 REMARK 500 PHE B 371 -67.05 -124.99 REMARK 500 HIS A 126 161.69 76.89 REMARK 500 CYS A 127 44.05 -99.52 REMARK 500 PHE A 128 -118.53 -141.91 REMARK 500 LYS A 176 -51.97 -152.35 REMARK 500 SER A 190 -163.62 -168.68 REMARK 500 LEU A 251 -100.15 -108.09 REMARK 500 PRO A 365 46.36 -86.13 REMARK 500 PHE A 371 -68.53 -126.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP B 309 LYS B 310 136.81 REMARK 500 SER A 82 LYS A 83 -147.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 416 0.11 SIDE CHAIN REMARK 500 ARG A 281 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8UAG RELATED DB: PDB REMARK 900 SAME PROTEIN FROM DIFFERENT CRYSTALLISATION CONDITIONS AND HIGHER REMARK 900 RESOLUTION DATA DBREF 8VRF B 1 464 UNP Q4QES5 Q4QES5_LEIMA 1 464 DBREF 8VRF A 1 464 UNP Q4QES5 Q4QES5_LEIMA 1 464 SEQRES 1 B 464 MET ALA LYS GLU TRP LEU ILE PHE ALA LEU GLY THR ASN SEQRES 2 B 464 ASN TRP GLN GLY PRO GLY GLN PHE ALA PRO GLY SER GLY SEQRES 3 B 464 ILE LEU HIS GLN GLY GLN HIS ILE ALA MET ASN SER LEU SEQRES 4 B 464 GLU LYS CYS HIS CYS TYR SER ILE TRP PRO SER ASP LEU SEQRES 5 B 464 GLN LYS THR PRO THR ASP ARG ASP ASP TYR ARG VAL TYR SEQRES 6 B 464 GLU ILE PRO HIS PRO ILE PRO ILE CYS GLU SER VAL GLY SEQRES 7 B 464 PRO GLN SER SER LYS ARG TRP HIS SER MET THR ASP GLU SEQRES 8 B 464 GLU VAL THR SER TYR CYS ASP ASN LEU LEU LYS GLU CYS SEQRES 9 B 464 THR ASP PHE ILE GLU TYR ILE GLU LYS LYS HIS GLY LYS SEQRES 10 B 464 ARG ILE ASN LEU PHE LEU ALA HIS HIS CYS PHE MET ASN SEQRES 11 B 464 PRO VAL ILE MET SER GLU ILE ASN GLU ARG ARG VAL ALA SEQRES 12 B 464 GLN GLY ILE PRO LYS VAL PRO LEU VAL VAL PHE ALA HIS SEQRES 13 B 464 GLY THR ALA LEU LYS MET TYR GLU ASN GLU ILE ASN LYS SEQRES 14 B 464 LEU PRO GLU PHE PRO MET LYS TYR TYR ASP TRP ILE ARG SEQRES 15 B 464 GLY THR LYS ASN ILE PHE GLU SER THR GLY HIS VAL SER SEQRES 16 B 464 GLY VAL PHE ALA VAL SER ALA PRO GLN LYS ASN SER PHE SEQRES 17 B 464 GLU LYS LEU PHE PRO LEU PHE PRO GLN GLU ARG VAL ALA SEQRES 18 B 464 ILE THR PRO CYS GLY TYR ASN GLN LEU VAL PHE HIS ARG SEQRES 19 B 464 ILE GLN GLY MET THR ARG GLU LYS ALA PHE GLY HIS MET SEQRES 20 B 464 PRO GLN ALA LEU TYR ASP GLY PHE ASP ALA THR GLN LEU SEQRES 21 B 464 SER PRO VAL GLN ARG HIS VAL ALA SER ASP GLN CYS ILE SEQRES 22 B 464 PRO ASP VAL ASN ALA TYR ASP ARG VAL VAL VAL PHE CYS SEQRES 23 B 464 GLY ARG PHE ALA HIS TRP LYS ARG ILE ASP SER VAL LEU SEQRES 24 B 464 LYS ALA ALA SER ARG TRP GLU LYS GLU ASP LYS ARG ILE SEQRES 25 B 464 LEU THR LEU ILE PHE GLY ALA GLY SER GLN GLU THR ARG SEQRES 26 B 464 LYS LEU TYR VAL ASP MET ALA TYR GLN THR LEU GLY LEU SEQRES 27 B 464 LYS ASP THR PHE PHE LEU GLY PRO GLN SER GLN PRO ASP SEQRES 28 B 464 LEU ALA ASN VAL TYR THR VAL ALA ASP VAL SER VAL PHE SEQRES 29 B 464 PRO SER HIS ASP GLU PRO PHE GLY LEU VAL PHE ILE GLU SEQRES 30 B 464 CYS MET GLY CYS GLY THR PRO VAL ILE GLY ALA LYS SER SEQRES 31 B 464 GLY GLY PRO LEU ASP PHE VAL ASN ASP GLU VAL GLY ALA SEQRES 32 B 464 LEU VAL ASP GLU GLY THR ASN ASP GLU VAL ALA GLU ARG SEQRES 33 B 464 VAL TYR ALA ALA VAL LYS GLN ALA LEU ALA GLU ASP TRP SEQRES 34 B 464 LYS LYS THR LYS GLY ALA GLN CYS GLU GLN TYR ALA LEU SEQRES 35 B 464 LYS LYS PHE SER LEU ALA SER GLN ALA GLU LEU MET LEU SEQRES 36 B 464 GLU PHE VAL GLU SER HIS PHE THR LYS SEQRES 1 A 464 MET ALA LYS GLU TRP LEU ILE PHE ALA LEU GLY THR ASN SEQRES 2 A 464 ASN TRP GLN GLY PRO GLY GLN PHE ALA PRO GLY SER GLY SEQRES 3 A 464 ILE LEU HIS GLN GLY GLN HIS ILE ALA MET ASN SER LEU SEQRES 4 A 464 GLU LYS CYS HIS CYS TYR SER ILE TRP PRO SER ASP LEU SEQRES 5 A 464 GLN LYS THR PRO THR ASP ARG ASP ASP TYR ARG VAL TYR SEQRES 6 A 464 GLU ILE PRO HIS PRO ILE PRO ILE CYS GLU SER VAL GLY SEQRES 7 A 464 PRO GLN SER SER LYS ARG TRP HIS SER MET THR ASP GLU SEQRES 8 A 464 GLU VAL THR SER TYR CYS ASP ASN LEU LEU LYS GLU CYS SEQRES 9 A 464 THR ASP PHE ILE GLU TYR ILE GLU LYS LYS HIS GLY LYS SEQRES 10 A 464 ARG ILE ASN LEU PHE LEU ALA HIS HIS CYS PHE MET ASN SEQRES 11 A 464 PRO VAL ILE MET SER GLU ILE ASN GLU ARG ARG VAL ALA SEQRES 12 A 464 GLN GLY ILE PRO LYS VAL PRO LEU VAL VAL PHE ALA HIS SEQRES 13 A 464 GLY THR ALA LEU LYS MET TYR GLU ASN GLU ILE ASN LYS SEQRES 14 A 464 LEU PRO GLU PHE PRO MET LYS TYR TYR ASP TRP ILE ARG SEQRES 15 A 464 GLY THR LYS ASN ILE PHE GLU SER THR GLY HIS VAL SER SEQRES 16 A 464 GLY VAL PHE ALA VAL SER ALA PRO GLN LYS ASN SER PHE SEQRES 17 A 464 GLU LYS LEU PHE PRO LEU PHE PRO GLN GLU ARG VAL ALA SEQRES 18 A 464 ILE THR PRO CYS GLY TYR ASN GLN LEU VAL PHE HIS ARG SEQRES 19 A 464 ILE GLN GLY MET THR ARG GLU LYS ALA PHE GLY HIS MET SEQRES 20 A 464 PRO GLN ALA LEU TYR ASP GLY PHE ASP ALA THR GLN LEU SEQRES 21 A 464 SER PRO VAL GLN ARG HIS VAL ALA SER ASP GLN CYS ILE SEQRES 22 A 464 PRO ASP VAL ASN ALA TYR ASP ARG VAL VAL VAL PHE CYS SEQRES 23 A 464 GLY ARG PHE ALA HIS TRP LYS ARG ILE ASP SER VAL LEU SEQRES 24 A 464 LYS ALA ALA SER ARG TRP GLU LYS GLU ASP LYS ARG ILE SEQRES 25 A 464 LEU THR LEU ILE PHE GLY ALA GLY SER GLN GLU THR ARG SEQRES 26 A 464 LYS LEU TYR VAL ASP MET ALA TYR GLN THR LEU GLY LEU SEQRES 27 A 464 LYS ASP THR PHE PHE LEU GLY PRO GLN SER GLN PRO ASP SEQRES 28 A 464 LEU ALA ASN VAL TYR THR VAL ALA ASP VAL SER VAL PHE SEQRES 29 A 464 PRO SER HIS ASP GLU PRO PHE GLY LEU VAL PHE ILE GLU SEQRES 30 A 464 CYS MET GLY CYS GLY THR PRO VAL ILE GLY ALA LYS SER SEQRES 31 A 464 GLY GLY PRO LEU ASP PHE VAL ASN ASP GLU VAL GLY ALA SEQRES 32 A 464 LEU VAL ASP GLU GLY THR ASN ASP GLU VAL ALA GLU ARG SEQRES 33 A 464 VAL TYR ALA ALA VAL LYS GLN ALA LEU ALA GLU ASP TRP SEQRES 34 A 464 LYS LYS THR LYS GLY ALA GLN CYS GLU GLN TYR ALA LEU SEQRES 35 A 464 LYS LYS PHE SER LEU ALA SER GLN ALA GLU LEU MET LEU SEQRES 36 A 464 GLU PHE VAL GLU SER HIS PHE THR LYS HET CA B 501 1 HET CA B 502 1 HET GOL B 503 6 HET GOL B 504 6 HET GOL B 505 6 HET UPG B 506 36 HET CA A 501 1 HET GOL A 502 6 HET GOL A 503 6 HET GOL A 504 6 HET GOL A 505 6 HET UPG A 506 36 HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETNAM UPG URIDINE-5'-DIPHOSPHATE-GLUCOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN UPG URIDINE-5'-MONOPHOSPHATE GLUCOPYRANOSYL-MONOPHOSPHATE HETSYN 2 UPG ESTER FORMUL 3 CA 3(CA 2+) FORMUL 5 GOL 7(C3 H8 O3) FORMUL 8 UPG 2(C15 H24 N2 O17 P2) FORMUL 15 HOH *646(H2 O) HELIX 1 AA1 PRO B 23 LEU B 39 1 17 HELIX 2 AA2 ARG B 84 MET B 88 5 5 HELIX 3 AA3 THR B 89 GLY B 116 1 28 HELIX 4 AA4 PHE B 128 ALA B 143 1 16 HELIX 5 AA5 GLY B 157 ASN B 168 1 12 HELIX 6 AA6 TYR B 177 THR B 184 1 8 HELIX 7 AA7 SER B 201 PHE B 212 1 12 HELIX 8 AA8 PRO B 216 GLU B 218 5 3 HELIX 9 AA9 THR B 239 GLY B 245 1 7 HELIX 10 AB1 SER B 261 ARG B 265 5 5 HELIX 11 AB2 ASP B 275 TYR B 279 5 5 HELIX 12 AB3 ALA B 290 LYS B 293 5 4 HELIX 13 AB4 ARG B 294 GLU B 306 1 13 HELIX 14 AB5 LYS B 307 ASP B 309 5 3 HELIX 15 AB6 SER B 321 GLN B 334 1 14 HELIX 16 AB7 SER B 348 ALA B 359 1 12 HELIX 17 AB8 GLY B 372 CYS B 381 1 10 HELIX 18 AB9 GLY B 391 PHE B 396 5 6 HELIX 19 AC1 THR B 409 ASP B 428 1 20 HELIX 20 AC2 ASP B 428 SER B 446 1 19 HELIX 21 AC3 SER B 446 PHE B 462 1 17 HELIX 22 AC4 PRO A 23 SER A 38 1 16 HELIX 23 AC5 ARG A 84 MET A 88 5 5 HELIX 24 AC6 THR A 89 GLY A 116 1 28 HELIX 25 AC7 PHE A 128 ALA A 143 1 16 HELIX 26 AC8 GLY A 157 ASN A 168 1 12 HELIX 27 AC9 TYR A 177 THR A 184 1 8 HELIX 28 AD1 SER A 201 PHE A 212 1 12 HELIX 29 AD2 PRO A 216 GLU A 218 5 3 HELIX 30 AD3 THR A 239 PHE A 244 1 6 HELIX 31 AD4 ASP A 256 LEU A 260 5 5 HELIX 32 AD5 SER A 261 ARG A 265 5 5 HELIX 33 AD6 ASP A 275 TYR A 279 5 5 HELIX 34 AD7 ALA A 290 LYS A 293 5 4 HELIX 35 AD8 ARG A 294 GLU A 306 1 13 HELIX 36 AD9 SER A 321 GLN A 334 1 14 HELIX 37 AE1 SER A 348 ALA A 359 1 12 HELIX 38 AE2 GLY A 372 CYS A 381 1 10 HELIX 39 AE3 GLY A 392 VAL A 397 1 6 HELIX 40 AE4 THR A 409 GLU A 427 1 19 HELIX 41 AE5 ASP A 428 SER A 446 1 19 HELIX 42 AE6 SER A 446 PHE A 462 1 17 SHEET 1 AA1 7 TYR B 62 GLU B 66 0 SHEET 2 AA1 7 CYS B 42 SER B 50 1 N TRP B 48 O TYR B 65 SHEET 3 AA1 7 TRP B 5 LEU B 10 1 N ALA B 9 O TYR B 45 SHEET 4 AA1 7 LEU B 121 HIS B 125 1 O LEU B 123 N LEU B 10 SHEET 5 AA1 7 LEU B 151 ALA B 155 1 O VAL B 152 N PHE B 122 SHEET 6 AA1 7 GLY B 196 ALA B 199 1 O PHE B 198 N VAL B 153 SHEET 7 AA1 7 VAL B 220 ILE B 222 1 O ALA B 221 N ALA B 199 SHEET 1 AA2 6 THR B 341 GLY B 345 0 SHEET 2 AA2 6 ILE B 312 PHE B 317 1 N ILE B 316 O PHE B 342 SHEET 3 AA2 6 ARG B 281 CYS B 286 1 N ARG B 281 O LEU B 313 SHEET 4 AA2 6 VAL B 361 VAL B 363 1 O VAL B 363 N VAL B 284 SHEET 5 AA2 6 VAL B 385 ALA B 388 1 O ILE B 386 N SER B 362 SHEET 6 AA2 6 GLY B 402 VAL B 405 1 O VAL B 405 N GLY B 387 SHEET 1 AA3 7 TYR A 62 GLU A 66 0 SHEET 2 AA3 7 CYS A 42 SER A 50 1 N TRP A 48 O TYR A 65 SHEET 3 AA3 7 TRP A 5 LEU A 10 1 N ALA A 9 O TYR A 45 SHEET 4 AA3 7 LEU A 121 HIS A 125 1 O LEU A 123 N LEU A 10 SHEET 5 AA3 7 LEU A 151 ALA A 155 1 O VAL A 152 N PHE A 122 SHEET 6 AA3 7 GLY A 196 ALA A 199 1 O PHE A 198 N VAL A 153 SHEET 7 AA3 7 VAL A 220 ILE A 222 1 O ALA A 221 N ALA A 199 SHEET 1 AA4 6 THR A 341 GLY A 345 0 SHEET 2 AA4 6 ILE A 312 PHE A 317 1 N ILE A 316 O PHE A 342 SHEET 3 AA4 6 ARG A 281 CYS A 286 1 N VAL A 283 O LEU A 313 SHEET 4 AA4 6 VAL A 361 VAL A 363 1 O VAL A 363 N VAL A 284 SHEET 5 AA4 6 VAL A 385 ALA A 388 1 O ILE A 386 N SER A 362 SHEET 6 AA4 6 GLY A 402 VAL A 405 1 O VAL A 405 N GLY A 387 CRYST1 130.057 92.709 100.550 90.00 120.44 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007689 0.000000 0.004518 0.00000 SCALE2 0.000000 0.010786 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011535 0.00000 CONECT 7364 7365 7366 CONECT 7365 7364 CONECT 7366 7364 7367 7368 CONECT 7367 7366 CONECT 7368 7366 7369 CONECT 7369 7368 CONECT 7370 7371 7372 CONECT 7371 7370 CONECT 7372 7370 7373 7374 CONECT 7373 7372 CONECT 7374 7372 7375 CONECT 7375 7374 CONECT 7376 7377 7378 CONECT 7377 7376 CONECT 7378 7376 7379 7380 CONECT 7379 7378 CONECT 7380 7378 7381 CONECT 7381 7380 CONECT 7382 7383 7387 7390 CONECT 7383 7382 7384 7388 CONECT 7384 7383 7385 CONECT 7385 7384 7386 7389 CONECT 7386 7385 7387 CONECT 7387 7382 7386 CONECT 7388 7383 CONECT 7389 7385 CONECT 7390 7382 7391 7395 CONECT 7391 7390 7392 7393 CONECT 7392 7391 CONECT 7393 7391 7394 7396 CONECT 7394 7393 7395 7397 CONECT 7395 7390 7394 CONECT 7396 7393 CONECT 7397 7394 7398 CONECT 7398 7397 7399 CONECT 7399 7398 7400 7401 7402 CONECT 7400 7399 CONECT 7401 7399 CONECT 7402 7399 7403 CONECT 7403 7402 7404 7405 7406 CONECT 7404 7403 CONECT 7405 7403 CONECT 7406 7403 7407 CONECT 7407 7406 7408 7416 CONECT 7408 7407 7409 7413 CONECT 7409 7408 7410 7414 CONECT 7410 7409 7411 7415 CONECT 7411 7410 7412 7416 CONECT 7412 7411 7417 CONECT 7413 7408 CONECT 7414 7409 CONECT 7415 7410 CONECT 7416 7407 7411 CONECT 7417 7412 CONECT 7419 7420 7421 CONECT 7420 7419 CONECT 7421 7419 7422 7423 CONECT 7422 7421 CONECT 7423 7421 7424 CONECT 7424 7423 CONECT 7425 7426 7427 CONECT 7426 7425 CONECT 7427 7425 7428 7429 CONECT 7428 7427 CONECT 7429 7427 7430 CONECT 7430 7429 CONECT 7431 7432 7433 CONECT 7432 7431 CONECT 7433 7431 7434 7435 CONECT 7434 7433 CONECT 7435 7433 7436 CONECT 7436 7435 CONECT 7437 7438 7439 CONECT 7438 7437 CONECT 7439 7437 7440 7441 CONECT 7440 7439 CONECT 7441 7439 7442 CONECT 7442 7441 CONECT 7443 7444 7448 7451 CONECT 7444 7443 7445 7449 CONECT 7445 7444 7446 CONECT 7446 7445 7447 7450 CONECT 7447 7446 7448 CONECT 7448 7443 7447 CONECT 7449 7444 CONECT 7450 7446 CONECT 7451 7443 7452 7456 CONECT 7452 7451 7453 7454 CONECT 7453 7452 CONECT 7454 7452 7455 7457 CONECT 7455 7454 7456 7458 CONECT 7456 7451 7455 CONECT 7457 7454 CONECT 7458 7455 7459 CONECT 7459 7458 7460 CONECT 7460 7459 7461 7462 7463 CONECT 7461 7460 CONECT 7462 7460 CONECT 7463 7460 7464 CONECT 7464 7463 7465 7466 7467 CONECT 7465 7464 CONECT 7466 7464 CONECT 7467 7464 7468 CONECT 7468 7467 7469 7477 CONECT 7469 7468 7470 7474 CONECT 7470 7469 7471 7475 CONECT 7471 7470 7472 7476 CONECT 7472 7471 7473 7477 CONECT 7473 7472 7478 CONECT 7474 7469 CONECT 7475 7470 CONECT 7476 7471 CONECT 7477 7468 7472 CONECT 7478 7473 MASTER 371 0 12 42 26 0 0 6 8031 2 114 72 END