HEADER VIRAL PROTEIN 25-JAN-24 8VT3 TITLE CRYO-EM STRUCTURE OF HMPV (MPV-2CREKR) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PREFUSION OF HMPV (MPV-2CREKR), N-FRAGMENT; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PREFUSION OF HMPV (MPV-2CREKR), C-FRAGMENT; COMPND 7 CHAIN: G, H, I; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN METAPNEUMOVIRUS; SOURCE 3 ORGANISM_TAXID: 162145; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HUMAN METAPNEUMOVIRUS; SOURCE 9 ORGANISM_TAXID: 162145; SOURCE 10 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 11 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS PREFUSION, HMPV, CRYO-EM, VIRUS, VIRAL PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR X.YU,J.P.M.LANGEDIJK REVDAT 2 07-AUG-24 8VT3 1 JRNL REVDAT 1 31-JUL-24 8VT3 0 JRNL AUTH M.J.G.BAKKERS,T.RITSCHEL,M.TIEMESSEN,J.DIJKMAN,A.A.ZUFFIANO, JRNL AUTH 2 X.YU,D.VAN OVERVELD,L.LE,R.VOORZAAT,M.M.VAN HAAREN,M.DE MAN, JRNL AUTH 3 S.TAMARA,L.VAN DER FITS,R.ZAHN,J.JURASZEK,J.P.M.LANGEDIJK JRNL TITL EFFICACIOUS HUMAN METAPNEUMOVIRUS VACCINE BASED ON AI-GUIDED JRNL TITL 2 ENGINEERING OF A CLOSED PREFUSION TRIMER. JRNL REF NAT COMMUN V. 15 6270 2024 JRNL REFN ESSN 2041-1723 JRNL PMID 39054318 JRNL DOI 10.1038/S41467-024-50659-5 REMARK 2 REMARK 2 RESOLUTION. 3.33 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.330 REMARK 3 NUMBER OF PARTICLES : 453003 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8VT3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JAN-24. REMARK 100 THE DEPOSITION ID IS D_1000281204. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : PREFUSION OF HMPV (MPV-2CREKR) REMARK 245 TRIMER COMPLEX REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TALOS ARCTICA REMARK 245 DETECTOR TYPE : FEI FALCON IV (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1200.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 4000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, G, H, I, D, E, F, J, REMARK 350 AND CHAINS: K, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 18 REMARK 465 GLY B 18 REMARK 465 GLY C 18 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN H 353 OG1 THR H 356 2.15 REMARK 500 O LEU H 141 NH2 ARG H 163 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 52 -52.38 -121.44 REMARK 500 SER A 65 -168.10 -167.96 REMARK 500 GLN A 88 149.82 -177.21 REMARK 500 ASP B 54 70.13 -102.73 REMARK 500 SER B 61 24.17 -141.12 REMARK 500 ASP B 87 53.35 -142.63 REMARK 500 LYS C 20 118.98 -161.47 REMARK 500 ASP C 54 75.81 -102.68 REMARK 500 GLN C 88 74.24 60.22 REMARK 500 LEU C 89 136.62 -39.44 REMARK 500 ARG C 91 106.89 -57.81 REMARK 500 ALA G 109 -153.50 -77.17 REMARK 500 LEU G 110 70.48 67.91 REMARK 500 GLU G 146 131.76 -170.50 REMARK 500 LEU G 151 -169.86 -77.76 REMARK 500 THR G 174 46.02 -75.74 REMARK 500 ASP G 183 78.29 -101.14 REMARK 500 ASP G 185 40.97 -97.78 REMARK 500 LEU G 187 -5.48 67.29 REMARK 500 THR G 223 -163.84 -73.60 REMARK 500 ASN G 313 96.75 -160.62 REMARK 500 TYR G 385 -159.92 -138.81 REMARK 500 ASP G 421 -26.75 65.54 REMARK 500 ASN G 422 -7.08 -155.38 REMARK 500 ALA H 109 -154.30 -76.88 REMARK 500 LEU H 110 70.01 66.63 REMARK 500 THR H 174 44.15 -80.68 REMARK 500 ARG H 175 -4.82 -143.64 REMARK 500 LYS H 179 31.57 -93.18 REMARK 500 ASP H 185 32.44 -98.39 REMARK 500 LEU H 187 -1.79 65.62 REMARK 500 SER H 237 -179.92 -69.93 REMARK 500 SER H 265 35.87 -142.26 REMARK 500 ASP H 280 67.78 60.79 REMARK 500 LEU H 302 148.41 -174.59 REMARK 500 ASN H 313 96.37 -160.83 REMARK 500 ARG H 367 10.16 -142.05 REMARK 500 TYR H 385 -161.10 -129.09 REMARK 500 ASP H 421 -26.73 67.59 REMARK 500 ASN H 422 -1.17 -157.32 REMARK 500 PRO H 453 -175.42 -64.45 REMARK 500 ALA I 109 -155.12 -76.88 REMARK 500 LEU I 110 69.83 66.48 REMARK 500 LEU I 141 33.42 -98.13 REMARK 500 CYS I 182 50.75 -96.28 REMARK 500 ASP I 185 69.68 -100.21 REMARK 500 LEU I 187 -3.89 65.75 REMARK 500 THR I 223 -176.48 -68.75 REMARK 500 ASP I 280 69.58 61.69 REMARK 500 LEU I 302 145.66 -177.08 REMARK 500 REMARK 500 THIS ENTRY HAS 57 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG G 501 REMARK 610 NAG H 501 REMARK 610 NAG I 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-43517 RELATED DB: EMDB DBREF 8VT3 A 18 92 UNP Q6WB98 FUS_HMPVC 18 92 DBREF 8VT3 B 18 92 UNP Q6WB98 FUS_HMPVC 18 92 DBREF 8VT3 C 18 92 UNP Q6WB98 FUS_HMPVC 18 92 DBREF 8VT3 G 103 487 UNP Q6WB98 FUS_HMPVC 103 487 DBREF 8VT3 H 103 487 UNP Q6WB98 FUS_HMPVC 103 487 DBREF 8VT3 I 103 487 UNP Q6WB98 FUS_HMPVC 103 487 SEQADV 8VT3 ARG G 112 UNP Q6WB98 VAL 112 CONFLICT SEQADV 8VT3 GLU G 209 UNP Q6WB98 ASP 209 CONFLICT SEQADV 8VT3 ILE G 231 UNP Q6WB98 VAL 231 CONFLICT SEQADV 8VT3 GLU G 294 UNP Q6WB98 GLY 294 CONFLICT SEQADV 8VT3 ASN G 368 UNP Q6WB98 HIS 368 CONFLICT SEQADV 8VT3 PRO G 453 UNP Q6WB98 GLU 453 CONFLICT SEQADV 8VT3 TRP G 473 UNP Q6WB98 LEU 473 CONFLICT SEQADV 8VT3 ARG G 475 UNP Q6WB98 ASP 475 CONFLICT SEQADV 8VT3 LYS G 476 UNP Q6WB98 GLN 476 CONFLICT SEQADV 8VT3 PHE G 477 UNP Q6WB98 SER 477 CONFLICT SEQADV 8VT3 ASP G 478 UNP Q6WB98 ASN 478 CONFLICT SEQADV 8VT3 GLU G 479 UNP Q6WB98 ARG 479 CONFLICT SEQADV 8VT3 ILE G 484 UNP Q6WB98 ALA 484 CONFLICT SEQADV 8VT3 ARG H 112 UNP Q6WB98 VAL 112 CONFLICT SEQADV 8VT3 GLU H 209 UNP Q6WB98 ASP 209 CONFLICT SEQADV 8VT3 ILE H 231 UNP Q6WB98 VAL 231 CONFLICT SEQADV 8VT3 GLU H 294 UNP Q6WB98 GLY 294 CONFLICT SEQADV 8VT3 ASN H 368 UNP Q6WB98 HIS 368 CONFLICT SEQADV 8VT3 PRO H 453 UNP Q6WB98 GLU 453 CONFLICT SEQADV 8VT3 TRP H 473 UNP Q6WB98 LEU 473 CONFLICT SEQADV 8VT3 ARG H 475 UNP Q6WB98 ASP 475 CONFLICT SEQADV 8VT3 LYS H 476 UNP Q6WB98 GLN 476 CONFLICT SEQADV 8VT3 PHE H 477 UNP Q6WB98 SER 477 CONFLICT SEQADV 8VT3 ASP H 478 UNP Q6WB98 ASN 478 CONFLICT SEQADV 8VT3 GLU H 479 UNP Q6WB98 ARG 479 CONFLICT SEQADV 8VT3 ILE H 484 UNP Q6WB98 ALA 484 CONFLICT SEQADV 8VT3 ARG I 112 UNP Q6WB98 VAL 112 CONFLICT SEQADV 8VT3 GLU I 209 UNP Q6WB98 ASP 209 CONFLICT SEQADV 8VT3 ILE I 231 UNP Q6WB98 VAL 231 CONFLICT SEQADV 8VT3 GLU I 294 UNP Q6WB98 GLY 294 CONFLICT SEQADV 8VT3 ASN I 368 UNP Q6WB98 HIS 368 CONFLICT SEQADV 8VT3 PRO I 453 UNP Q6WB98 GLU 453 CONFLICT SEQADV 8VT3 TRP I 473 UNP Q6WB98 LEU 473 CONFLICT SEQADV 8VT3 ARG I 475 UNP Q6WB98 ASP 475 CONFLICT SEQADV 8VT3 LYS I 476 UNP Q6WB98 GLN 476 CONFLICT SEQADV 8VT3 PHE I 477 UNP Q6WB98 SER 477 CONFLICT SEQADV 8VT3 ASP I 478 UNP Q6WB98 ASN 478 CONFLICT SEQADV 8VT3 GLU I 479 UNP Q6WB98 ARG 479 CONFLICT SEQADV 8VT3 ILE I 484 UNP Q6WB98 ALA 484 CONFLICT SEQRES 1 A 75 GLY LEU LYS GLU SER TYR LEU GLU GLU SER CYS SER THR SEQRES 2 A 75 ILE THR GLU GLY TYR LEU SER VAL LEU ARG THR GLY TRP SEQRES 3 A 75 TYR THR ASN VAL PHE THR LEU GLU VAL GLY ASP VAL GLU SEQRES 4 A 75 ASN LEU THR CYS SER ASP GLY PRO SER LEU ILE LYS THR SEQRES 5 A 75 GLU LEU ASP LEU THR LYS SER ALA LEU ARG GLU LEU LYS SEQRES 6 A 75 THR VAL SER ALA ASP GLN LEU ALA ARG GLU SEQRES 1 B 75 GLY LEU LYS GLU SER TYR LEU GLU GLU SER CYS SER THR SEQRES 2 B 75 ILE THR GLU GLY TYR LEU SER VAL LEU ARG THR GLY TRP SEQRES 3 B 75 TYR THR ASN VAL PHE THR LEU GLU VAL GLY ASP VAL GLU SEQRES 4 B 75 ASN LEU THR CYS SER ASP GLY PRO SER LEU ILE LYS THR SEQRES 5 B 75 GLU LEU ASP LEU THR LYS SER ALA LEU ARG GLU LEU LYS SEQRES 6 B 75 THR VAL SER ALA ASP GLN LEU ALA ARG GLU SEQRES 1 C 75 GLY LEU LYS GLU SER TYR LEU GLU GLU SER CYS SER THR SEQRES 2 C 75 ILE THR GLU GLY TYR LEU SER VAL LEU ARG THR GLY TRP SEQRES 3 C 75 TYR THR ASN VAL PHE THR LEU GLU VAL GLY ASP VAL GLU SEQRES 4 C 75 ASN LEU THR CYS SER ASP GLY PRO SER LEU ILE LYS THR SEQRES 5 C 75 GLU LEU ASP LEU THR LYS SER ALA LEU ARG GLU LEU LYS SEQRES 6 C 75 THR VAL SER ALA ASP GLN LEU ALA ARG GLU SEQRES 1 G 385 PHE VAL LEU GLY ALA ILE ALA LEU GLY ARG ALA THR ALA SEQRES 2 G 385 ALA ALA VAL THR ALA GLY VAL ALA ILE ALA LYS THR ILE SEQRES 3 G 385 ARG LEU GLU SER GLU VAL THR ALA ILE LYS ASN ALA LEU SEQRES 4 G 385 LYS THR THR ASN GLU ALA VAL SER THR LEU GLY ASN GLY SEQRES 5 G 385 VAL ARG VAL LEU ALA THR ALA VAL ARG GLU LEU LYS ASP SEQRES 6 G 385 PHE VAL SER LYS ASN LEU THR ARG ALA ILE ASN LYS ASN SEQRES 7 G 385 LYS CYS ASP ILE ASP ASP LEU LYS MET ALA VAL SER PHE SEQRES 8 G 385 SER GLN PHE ASN ARG ARG PHE LEU ASN VAL VAL ARG GLN SEQRES 9 G 385 PHE SER GLU ASN ALA GLY ILE THR PRO ALA ILE SER LEU SEQRES 10 G 385 ASP LEU MET THR ASP ALA GLU LEU ALA ARG ALA ILE SER SEQRES 11 G 385 ASN MET PRO THR SER ALA GLY GLN ILE LYS LEU MET LEU SEQRES 12 G 385 GLU ASN ARG ALA MET VAL ARG ARG LYS GLY PHE GLY ILE SEQRES 13 G 385 LEU ILE GLY VAL TYR GLY SER SER VAL ILE TYR MET VAL SEQRES 14 G 385 GLN LEU PRO ILE PHE GLY VAL ILE ASP THR PRO CYS TRP SEQRES 15 G 385 ILE VAL LYS ALA ALA PRO SER CYS SER GLU LYS LYS GLY SEQRES 16 G 385 ASN TYR ALA CYS LEU LEU ARG GLU ASP GLN GLY TRP TYR SEQRES 17 G 385 CYS GLN ASN ALA GLY SER THR VAL TYR TYR PRO ASN GLU SEQRES 18 G 385 LYS ASP CYS GLU THR ARG GLY ASP HIS VAL PHE CYS ASP SEQRES 19 G 385 THR ALA ALA GLY ILE ASN VAL ALA GLU GLN SER LYS GLU SEQRES 20 G 385 CYS ASN ILE ASN ILE SER THR THR ASN TYR PRO CYS LYS SEQRES 21 G 385 VAL SER THR GLY ARG ASN PRO ILE SER MET VAL ALA LEU SEQRES 22 G 385 SER PRO LEU GLY ALA LEU VAL ALA CYS TYR LYS GLY VAL SEQRES 23 G 385 SER CYS SER ILE GLY SER ASN ARG VAL GLY ILE ILE LYS SEQRES 24 G 385 GLN LEU ASN LYS GLY CYS SER TYR ILE THR ASN GLN ASP SEQRES 25 G 385 ALA ASP THR VAL THR ILE ASP ASN THR VAL TYR GLN LEU SEQRES 26 G 385 SER LYS VAL GLU GLY GLU GLN HIS VAL ILE LYS GLY ARG SEQRES 27 G 385 PRO VAL SER SER SER PHE ASP PRO ILE LYS PHE PRO PRO SEQRES 28 G 385 ASP GLN PHE ASN VAL ALA LEU ASP GLN VAL PHE GLU ASN SEQRES 29 G 385 ILE GLU ASN SER GLN ALA TRP VAL ARG LYS PHE ASP GLU SEQRES 30 G 385 ILE LEU SER SER ILE GLU LYS GLY SEQRES 1 H 385 PHE VAL LEU GLY ALA ILE ALA LEU GLY ARG ALA THR ALA SEQRES 2 H 385 ALA ALA VAL THR ALA GLY VAL ALA ILE ALA LYS THR ILE SEQRES 3 H 385 ARG LEU GLU SER GLU VAL THR ALA ILE LYS ASN ALA LEU SEQRES 4 H 385 LYS THR THR ASN GLU ALA VAL SER THR LEU GLY ASN GLY SEQRES 5 H 385 VAL ARG VAL LEU ALA THR ALA VAL ARG GLU LEU LYS ASP SEQRES 6 H 385 PHE VAL SER LYS ASN LEU THR ARG ALA ILE ASN LYS ASN SEQRES 7 H 385 LYS CYS ASP ILE ASP ASP LEU LYS MET ALA VAL SER PHE SEQRES 8 H 385 SER GLN PHE ASN ARG ARG PHE LEU ASN VAL VAL ARG GLN SEQRES 9 H 385 PHE SER GLU ASN ALA GLY ILE THR PRO ALA ILE SER LEU SEQRES 10 H 385 ASP LEU MET THR ASP ALA GLU LEU ALA ARG ALA ILE SER SEQRES 11 H 385 ASN MET PRO THR SER ALA GLY GLN ILE LYS LEU MET LEU SEQRES 12 H 385 GLU ASN ARG ALA MET VAL ARG ARG LYS GLY PHE GLY ILE SEQRES 13 H 385 LEU ILE GLY VAL TYR GLY SER SER VAL ILE TYR MET VAL SEQRES 14 H 385 GLN LEU PRO ILE PHE GLY VAL ILE ASP THR PRO CYS TRP SEQRES 15 H 385 ILE VAL LYS ALA ALA PRO SER CYS SER GLU LYS LYS GLY SEQRES 16 H 385 ASN TYR ALA CYS LEU LEU ARG GLU ASP GLN GLY TRP TYR SEQRES 17 H 385 CYS GLN ASN ALA GLY SER THR VAL TYR TYR PRO ASN GLU SEQRES 18 H 385 LYS ASP CYS GLU THR ARG GLY ASP HIS VAL PHE CYS ASP SEQRES 19 H 385 THR ALA ALA GLY ILE ASN VAL ALA GLU GLN SER LYS GLU SEQRES 20 H 385 CYS ASN ILE ASN ILE SER THR THR ASN TYR PRO CYS LYS SEQRES 21 H 385 VAL SER THR GLY ARG ASN PRO ILE SER MET VAL ALA LEU SEQRES 22 H 385 SER PRO LEU GLY ALA LEU VAL ALA CYS TYR LYS GLY VAL SEQRES 23 H 385 SER CYS SER ILE GLY SER ASN ARG VAL GLY ILE ILE LYS SEQRES 24 H 385 GLN LEU ASN LYS GLY CYS SER TYR ILE THR ASN GLN ASP SEQRES 25 H 385 ALA ASP THR VAL THR ILE ASP ASN THR VAL TYR GLN LEU SEQRES 26 H 385 SER LYS VAL GLU GLY GLU GLN HIS VAL ILE LYS GLY ARG SEQRES 27 H 385 PRO VAL SER SER SER PHE ASP PRO ILE LYS PHE PRO PRO SEQRES 28 H 385 ASP GLN PHE ASN VAL ALA LEU ASP GLN VAL PHE GLU ASN SEQRES 29 H 385 ILE GLU ASN SER GLN ALA TRP VAL ARG LYS PHE ASP GLU SEQRES 30 H 385 ILE LEU SER SER ILE GLU LYS GLY SEQRES 1 I 385 PHE VAL LEU GLY ALA ILE ALA LEU GLY ARG ALA THR ALA SEQRES 2 I 385 ALA ALA VAL THR ALA GLY VAL ALA ILE ALA LYS THR ILE SEQRES 3 I 385 ARG LEU GLU SER GLU VAL THR ALA ILE LYS ASN ALA LEU SEQRES 4 I 385 LYS THR THR ASN GLU ALA VAL SER THR LEU GLY ASN GLY SEQRES 5 I 385 VAL ARG VAL LEU ALA THR ALA VAL ARG GLU LEU LYS ASP SEQRES 6 I 385 PHE VAL SER LYS ASN LEU THR ARG ALA ILE ASN LYS ASN SEQRES 7 I 385 LYS CYS ASP ILE ASP ASP LEU LYS MET ALA VAL SER PHE SEQRES 8 I 385 SER GLN PHE ASN ARG ARG PHE LEU ASN VAL VAL ARG GLN SEQRES 9 I 385 PHE SER GLU ASN ALA GLY ILE THR PRO ALA ILE SER LEU SEQRES 10 I 385 ASP LEU MET THR ASP ALA GLU LEU ALA ARG ALA ILE SER SEQRES 11 I 385 ASN MET PRO THR SER ALA GLY GLN ILE LYS LEU MET LEU SEQRES 12 I 385 GLU ASN ARG ALA MET VAL ARG ARG LYS GLY PHE GLY ILE SEQRES 13 I 385 LEU ILE GLY VAL TYR GLY SER SER VAL ILE TYR MET VAL SEQRES 14 I 385 GLN LEU PRO ILE PHE GLY VAL ILE ASP THR PRO CYS TRP SEQRES 15 I 385 ILE VAL LYS ALA ALA PRO SER CYS SER GLU LYS LYS GLY SEQRES 16 I 385 ASN TYR ALA CYS LEU LEU ARG GLU ASP GLN GLY TRP TYR SEQRES 17 I 385 CYS GLN ASN ALA GLY SER THR VAL TYR TYR PRO ASN GLU SEQRES 18 I 385 LYS ASP CYS GLU THR ARG GLY ASP HIS VAL PHE CYS ASP SEQRES 19 I 385 THR ALA ALA GLY ILE ASN VAL ALA GLU GLN SER LYS GLU SEQRES 20 I 385 CYS ASN ILE ASN ILE SER THR THR ASN TYR PRO CYS LYS SEQRES 21 I 385 VAL SER THR GLY ARG ASN PRO ILE SER MET VAL ALA LEU SEQRES 22 I 385 SER PRO LEU GLY ALA LEU VAL ALA CYS TYR LYS GLY VAL SEQRES 23 I 385 SER CYS SER ILE GLY SER ASN ARG VAL GLY ILE ILE LYS SEQRES 24 I 385 GLN LEU ASN LYS GLY CYS SER TYR ILE THR ASN GLN ASP SEQRES 25 I 385 ALA ASP THR VAL THR ILE ASP ASN THR VAL TYR GLN LEU SEQRES 26 I 385 SER LYS VAL GLU GLY GLU GLN HIS VAL ILE LYS GLY ARG SEQRES 27 I 385 PRO VAL SER SER SER PHE ASP PRO ILE LYS PHE PRO PRO SEQRES 28 I 385 ASP GLN PHE ASN VAL ALA LEU ASP GLN VAL PHE GLU ASN SEQRES 29 I 385 ILE GLU ASN SER GLN ALA TRP VAL ARG LYS PHE ASP GLU SEQRES 30 I 385 ILE LEU SER SER ILE GLU LYS GLY HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET NAG E 1 14 HET NAG E 2 14 HET NAG F 1 14 HET NAG F 2 14 HET BMA F 3 11 HET NAG J 1 14 HET NAG J 2 14 HET NAG K 1 14 HET NAG K 2 14 HET BMA K 3 11 HET NAG L 1 14 HET NAG L 2 14 HET NAG G 501 14 HET NAG H 501 14 HET NAG I 501 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 7 NAG 15(C8 H15 N O6) FORMUL 7 BMA 3(C6 H12 O6) HELIX 1 AA1 SER A 65 LEU A 81 1 17 HELIX 2 AA2 LYS A 82 VAL A 84 5 3 HELIX 3 AA3 SER B 65 LEU B 81 1 17 HELIX 4 AA4 ASP C 54 LEU C 58 5 5 HELIX 5 AA5 SER C 65 LYS C 82 1 18 HELIX 6 AA6 VAL G 104 ALA G 109 1 6 HELIX 7 AA7 GLY G 111 ARG G 129 1 19 HELIX 8 AA8 LEU G 130 LYS G 138 1 9 HELIX 9 AA9 ARG G 163 ASN G 172 1 10 HELIX 10 AB1 LYS G 188 ASN G 197 1 10 HELIX 11 AB2 ARG G 199 ASN G 210 1 12 HELIX 12 AB3 ALA G 230 MET G 234 5 5 HELIX 13 AB4 SER G 237 GLU G 246 1 10 HELIX 14 AB5 ASN G 247 GLY G 255 5 9 HELIX 15 AB6 ALA G 344 ILE G 352 5 9 HELIX 16 AB7 PRO G 441 PHE G 446 5 6 HELIX 17 AB8 LEU G 460 LYS G 486 1 27 HELIX 18 AB9 VAL H 104 ALA H 109 1 6 HELIX 19 AC1 GLY H 111 ARG H 129 1 19 HELIX 20 AC2 LEU H 130 LYS H 138 1 9 HELIX 21 AC3 ARG H 163 ASN H 172 1 10 HELIX 22 AC4 LEU H 173 ALA H 176 5 4 HELIX 23 AC5 LYS H 188 ASN H 197 1 10 HELIX 24 AC6 ARG H 199 ASN H 210 1 12 HELIX 25 AC7 THR H 223 ILE H 231 1 9 HELIX 26 AC8 SER H 232 MET H 234 5 3 HELIX 27 AC9 SER H 237 ASN H 247 1 11 HELIX 28 AD1 ARG H 248 GLY H 255 5 8 HELIX 29 AD2 ALA H 338 GLY H 340 5 3 HELIX 30 AD3 ALA H 344 ILE H 352 5 9 HELIX 31 AD4 PRO H 441 PHE H 446 5 6 HELIX 32 AD5 LEU H 460 LYS H 486 1 27 HELIX 33 AD6 VAL I 104 ALA I 109 1 6 HELIX 34 AD7 GLY I 111 ARG I 129 1 19 HELIX 35 AD8 LEU I 130 LYS I 138 1 9 HELIX 36 AD9 ARG I 163 ILE I 177 1 15 HELIX 37 AE1 SER I 192 ASN I 197 1 6 HELIX 38 AE2 ARG I 199 PHE I 207 1 9 HELIX 39 AE3 ALA I 230 MET I 234 5 5 HELIX 40 AE4 SER I 237 GLU I 246 1 10 HELIX 41 AE5 ASN I 247 GLY I 255 5 9 HELIX 42 AE6 ALA I 338 GLY I 340 5 3 HELIX 43 AE7 ALA I 344 GLU I 349 5 6 HELIX 44 AE8 PRO I 441 SER I 445 5 5 HELIX 45 AE9 LEU I 460 LYS I 486 1 27 SHEET 1 AA1 7 THR G 328 ARG G 329 0 SHEET 2 AA1 7 HIS G 332 VAL G 333 -1 O HIS G 332 N ARG G 329 SHEET 3 AA1 7 SER A 29 LEU A 39 1 N LEU A 36 O VAL G 333 SHEET 4 AA1 7 VAL G 278 ALA G 288 -1 O VAL G 278 N LEU A 39 SHEET 5 AA1 7 TRP G 309 CYS G 311 -1 O TYR G 310 N TRP G 284 SHEET 6 AA1 7 VAL G 318 TYR G 320 -1 O TYR G 320 N TRP G 309 SHEET 7 AA1 7 ILE G 341 ASN G 342 -1 O ILE G 341 N TYR G 319 SHEET 1 AA2 5 THR G 328 ARG G 329 0 SHEET 2 AA2 5 HIS G 332 VAL G 333 -1 O HIS G 332 N ARG G 329 SHEET 3 AA2 5 SER A 29 LEU A 39 1 N LEU A 36 O VAL G 333 SHEET 4 AA2 5 LYS A 20 LEU A 24 -1 N LYS A 20 O GLU A 33 SHEET 5 AA2 5 GLN G 434 ILE G 437 1 O ILE G 437 N TYR A 23 SHEET 1 AA3 6 GLU G 146 THR G 150 0 SHEET 2 AA3 6 ARG G 156 THR G 160 -1 O VAL G 157 N SER G 149 SHEET 3 AA3 6 TYR A 44 GLU A 51 1 N VAL A 47 O LEU G 158 SHEET 4 AA3 6 SER G 266 LEU G 273 -1 O LEU G 273 N TYR A 44 SHEET 5 AA3 6 PHE G 256 VAL G 262 -1 N GLY G 261 O ILE G 268 SHEET 6 AA3 6 ILE G 213 THR G 214 -1 N THR G 214 O GLY G 257 SHEET 1 AA4 7 THR H 328 ARG H 329 0 SHEET 2 AA4 7 HIS H 332 ASP H 336 -1 O HIS H 332 N ARG H 329 SHEET 3 AA4 7 SER B 29 ARG B 40 1 N VAL B 38 O VAL H 333 SHEET 4 AA4 7 VAL H 278 ALA H 288 -1 O VAL H 278 N LEU B 39 SHEET 5 AA4 7 GLY H 308 CYS H 311 -1 O TYR H 310 N TRP H 284 SHEET 6 AA4 7 VAL H 318 TYR H 320 -1 O TYR H 320 N TRP H 309 SHEET 7 AA4 7 ILE H 341 ASN H 342 -1 O ILE H 341 N TYR H 319 SHEET 1 AA5 5 THR H 328 ARG H 329 0 SHEET 2 AA5 5 HIS H 332 ASP H 336 -1 O HIS H 332 N ARG H 329 SHEET 3 AA5 5 SER B 29 ARG B 40 1 N VAL B 38 O VAL H 333 SHEET 4 AA5 5 LYS B 20 LEU B 24 -1 N SER B 22 O ILE B 31 SHEET 5 AA5 5 GLN H 434 ILE H 437 1 O ILE H 437 N TYR B 23 SHEET 1 AA6 6 GLU H 146 THR H 150 0 SHEET 2 AA6 6 ARG H 156 VAL H 162 -1 O VAL H 157 N SER H 149 SHEET 3 AA6 6 TRP B 43 GLU B 51 1 N VAL B 47 O LEU H 158 SHEET 4 AA6 6 SER H 266 PRO H 274 -1 O LEU H 273 N TYR B 44 SHEET 5 AA6 6 PHE H 256 VAL H 262 -1 N ILE H 258 O MET H 270 SHEET 6 AA6 6 ILE H 213 THR H 214 -1 N THR H 214 O GLY H 257 SHEET 1 AA7 6 VAL I 318 TYR I 320 0 SHEET 2 AA7 6 GLY I 308 CYS I 311 -1 N TRP I 309 O TYR I 320 SHEET 3 AA7 6 PHE I 276 ALA I 288 -1 N TRP I 284 O TYR I 310 SHEET 4 AA7 6 SER C 29 ARG C 40 -1 N LEU C 39 O VAL I 278 SHEET 5 AA7 6 HIS I 332 ASP I 336 1 O VAL I 333 N VAL C 38 SHEET 6 AA7 6 THR I 328 ARG I 329 -1 N ARG I 329 O HIS I 332 SHEET 1 AA8 6 VAL I 318 TYR I 320 0 SHEET 2 AA8 6 GLY I 308 CYS I 311 -1 N TRP I 309 O TYR I 320 SHEET 3 AA8 6 PHE I 276 ALA I 288 -1 N TRP I 284 O TYR I 310 SHEET 4 AA8 6 SER C 29 ARG C 40 -1 N LEU C 39 O VAL I 278 SHEET 5 AA8 6 LYS C 20 LEU C 24 -1 N LYS C 20 O GLU C 33 SHEET 6 AA8 6 GLN I 434 ILE I 437 1 O HIS I 435 N GLU C 21 SHEET 1 AA9 6 GLU I 146 THR I 150 0 SHEET 2 AA9 6 ARG I 156 THR I 160 -1 O VAL I 157 N SER I 149 SHEET 3 AA9 6 TYR C 44 GLU C 51 1 N VAL C 47 O LEU I 158 SHEET 4 AA9 6 SER I 266 LEU I 273 -1 O VAL I 267 N LEU C 50 SHEET 5 AA9 6 PHE I 256 VAL I 262 -1 N GLY I 261 O ILE I 268 SHEET 6 AA9 6 ILE I 213 THR I 214 -1 N THR I 214 O GLY I 257 SHEET 1 AB1 2 GLU G 294 LYS G 295 0 SHEET 2 AB1 2 ASN G 298 TYR G 299 -1 O ASN G 298 N LYS G 295 SHEET 1 AB2 2 LYS G 362 VAL G 363 0 SHEET 2 AB2 2 VAL G 458 ALA G 459 -1 O VAL G 458 N VAL G 363 SHEET 1 AB3 3 MET G 372 SER G 376 0 SHEET 2 AB3 3 GLY G 379 CYS G 384 -1 O ALA G 383 N MET G 372 SHEET 3 AB3 3 GLY G 406 THR G 411 -1 O GLY G 406 N CYS G 384 SHEET 1 AB4 4 GLY G 398 GLN G 402 0 SHEET 2 AB4 4 CYS G 390 SER G 394 -1 N ILE G 392 O ILE G 400 SHEET 3 AB4 4 THR G 417 ILE G 420 -1 O THR G 419 N SER G 391 SHEET 4 AB4 4 THR G 423 GLN G 426 -1 O TYR G 425 N VAL G 418 SHEET 1 AB5 2 GLU H 294 LYS H 295 0 SHEET 2 AB5 2 ASN H 298 TYR H 299 -1 O ASN H 298 N LYS H 295 SHEET 1 AB6 3 LEU H 303 ARG H 304 0 SHEET 2 AB6 3 LYS H 362 SER H 364 -1 O SER H 364 N LEU H 303 SHEET 3 AB6 3 VAL H 458 ALA H 459 -1 O VAL H 458 N VAL H 363 SHEET 1 AB7 3 MET H 372 SER H 376 0 SHEET 2 AB7 3 GLY H 379 CYS H 384 -1 O ALA H 383 N MET H 372 SHEET 3 AB7 3 GLY H 406 THR H 411 -1 O GLY H 406 N CYS H 384 SHEET 1 AB8 4 ILE H 399 LYS H 401 0 SHEET 2 AB8 4 CYS H 390 GLY H 393 -1 N ILE H 392 O ILE H 400 SHEET 3 AB8 4 THR H 417 ILE H 420 -1 O THR H 419 N SER H 391 SHEET 4 AB8 4 TYR H 425 GLN H 426 -1 O TYR H 425 N VAL H 418 SHEET 1 AB9 2 GLU I 294 LYS I 295 0 SHEET 2 AB9 2 ASN I 298 TYR I 299 -1 O ASN I 298 N LYS I 295 SHEET 1 AC1 3 LEU I 303 ARG I 304 0 SHEET 2 AC1 3 LYS I 362 SER I 364 -1 O SER I 364 N LEU I 303 SHEET 3 AC1 3 VAL I 458 ALA I 459 -1 O VAL I 458 N VAL I 363 SHEET 1 AC2 3 MET I 372 SER I 376 0 SHEET 2 AC2 3 GLY I 379 CYS I 384 -1 O LEU I 381 N ALA I 374 SHEET 3 AC2 3 GLY I 406 THR I 411 -1 O ILE I 410 N ALA I 380 SHEET 1 AC3 4 ILE I 399 GLN I 402 0 SHEET 2 AC3 4 CYS I 390 GLY I 393 -1 N ILE I 392 O ILE I 400 SHEET 3 AC3 4 THR I 417 ILE I 420 -1 O THR I 419 N SER I 391 SHEET 4 AC3 4 TYR I 425 GLN I 426 -1 O TYR I 425 N VAL I 418 LINK ND2 ASN A 57 C1 NAG E 1 1555 1555 1.44 LINK ND2 ASN B 57 C1 NAG J 1 1555 1555 1.44 LINK ND2 ASN C 57 C1 NAG L 1 1555 1555 1.44 LINK ND2 ASN G 172 C1 NAG D 1 1555 1555 1.44 LINK ND2 ASN H 172 C1 NAG F 1 1555 1555 1.44 LINK ND2 ASN I 172 C1 NAG K 1 1555 1555 1.44 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.45 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.45 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.44 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.44 LINK O4 NAG F 2 C1 BMA F 3 1555 1555 1.45 LINK O4 NAG J 1 C1 NAG J 2 1555 1555 1.44 LINK O4 NAG K 1 C1 NAG K 2 1555 1555 1.44 LINK O4 NAG K 2 C1 BMA K 3 1555 1555 1.45 LINK O4 NAG L 1 C1 NAG L 2 1555 1555 1.45 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000