HEADER PHOTOSYNTHESIS 26-JAN-24 8VTJ TITLE CRYSTAL STRUCTURE OF R. SPHAEROIDES PHOTOSYNTHETIC REACTION CENTER TITLE 2 VARIANT Y(M210)2-CYANOPHENYLALANINE CAVEAT 8VTJ CDL M 408 HAS WRONG CHIRALITY AT ATOM CA4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: REACTION CENTER PROTEIN H CHAIN; COMPND 3 CHAIN: H; COMPND 4 SYNONYM: PHOTOSYNTHETIC REACTION CENTER H SUBUNIT; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: REACTION CENTER PROTEIN L CHAIN; COMPND 8 CHAIN: L; COMPND 9 SYNONYM: PHOTOSYNTHETIC REACTION CENTER L SUBUNIT; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: REACTION CENTER PROTEIN M CHAIN; COMPND 13 CHAIN: M; COMPND 14 SYNONYM: PHOTOSYNTHETIC REACTION CENTER M SUBUNIT; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CEREIBACTER SPHAEROIDES; SOURCE 3 ORGANISM_TAXID: 1063; SOURCE 4 GENE: PUHA; SOURCE 5 EXPRESSION_SYSTEM: CEREIBACTER SPHAEROIDES; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 1063; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: CEREIBACTER SPHAEROIDES; SOURCE 9 ORGANISM_TAXID: 1063; SOURCE 10 GENE: PUFL; SOURCE 11 EXPRESSION_SYSTEM: CEREIBACTER SPHAEROIDES; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 1063; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: CEREIBACTER SPHAEROIDES; SOURCE 15 ORGANISM_TAXID: 1063; SOURCE 16 GENE: PUFM; SOURCE 17 EXPRESSION_SYSTEM: CEREIBACTER SPHAEROIDES; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 1063 KEYWDS MEMBRANE PROTEIN, PHOTOSYNTHESIS, ELECTRON TRANSFER EXPDTA X-RAY DIFFRACTION AUTHOR I.MATHEWS,K.TRAN,S.G.BOXER REVDAT 1 13-MAR-24 8VTJ 0 JRNL AUTH I.MATHEWS,K.TRAN,S.G.BOXER JRNL TITL CRYSTAL STRUCTURE OF R. SPHAEROIDES PHOTOSYNTHETIC REACTION JRNL TITL 2 CENTER VARIANT Y(M210)2-CYANOPHENYLALANINE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.19.2_4158: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.85 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 53035 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 2636 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.8500 - 7.4800 0.99 2792 150 0.1889 0.2012 REMARK 3 2 7.4800 - 5.9500 1.00 2736 138 0.1784 0.1936 REMARK 3 3 5.9500 - 5.2000 1.00 2686 142 0.1717 0.1968 REMARK 3 4 5.2000 - 4.7200 1.00 2678 137 0.1520 0.1701 REMARK 3 5 4.7200 - 4.3800 1.00 2692 139 0.1361 0.1663 REMARK 3 6 4.3800 - 4.1300 1.00 2635 141 0.1371 0.1815 REMARK 3 7 4.1300 - 3.9200 0.99 2618 137 0.1354 0.1511 REMARK 3 8 3.9200 - 3.7500 1.00 2670 138 0.1393 0.1813 REMARK 3 9 3.7500 - 3.6000 1.00 2615 138 0.1542 0.1925 REMARK 3 10 3.6000 - 3.4800 1.00 2657 137 0.1605 0.1723 REMARK 3 11 3.4800 - 3.3700 1.00 2635 137 0.1552 0.2151 REMARK 3 12 3.3700 - 3.2700 1.00 2637 139 0.1699 0.1997 REMARK 3 13 3.2700 - 3.1900 1.00 2647 138 0.1930 0.1948 REMARK 3 14 3.1900 - 3.1100 1.00 2608 136 0.2064 0.2341 REMARK 3 15 3.1100 - 3.0400 1.00 2642 140 0.2212 0.2550 REMARK 3 16 3.0400 - 2.9800 1.00 2626 140 0.2390 0.2636 REMARK 3 17 2.9800 - 2.9200 1.00 2628 135 0.2398 0.2965 REMARK 3 18 2.9200 - 2.8600 1.00 2609 140 0.2455 0.2720 REMARK 3 19 2.8600 - 2.8100 0.99 2588 134 0.2700 0.3057 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.030 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 59.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 7267 REMARK 3 ANGLE : 1.077 9962 REMARK 3 CHIRALITY : 0.057 1009 REMARK 3 PLANARITY : 0.009 1237 REMARK 3 DIHEDRAL : 15.063 1095 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -45.9308 41.8292 3.2282 REMARK 3 T TENSOR REMARK 3 T11: 0.3173 T22: 0.3419 REMARK 3 T33: 0.3294 T12: -0.0975 REMARK 3 T13: -0.0036 T23: -0.0236 REMARK 3 L TENSOR REMARK 3 L11: 0.7085 L22: 1.2862 REMARK 3 L33: 1.0075 L12: -0.1793 REMARK 3 L13: -0.1450 L23: 0.4157 REMARK 3 S TENSOR REMARK 3 S11: 0.0293 S12: 0.0253 S13: -0.0204 REMARK 3 S21: -0.0029 S22: 0.0007 S23: -0.0537 REMARK 3 S31: -0.0384 S32: 0.0902 S33: -0.0421 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8VTJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JAN-24. REMARK 100 THE DEPOSITION ID IS D_1000281125. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-AUG-23 REMARK 200 TEMPERATURE (KELVIN) : 250 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97893 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53054 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.810 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 22.60 REMARK 200 R MERGE (I) : 0.27590 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.0100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.81 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.91 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 22.10 REMARK 200 R MERGE FOR SHELL (I) : 2.27500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.460 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 77.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1 M POTASSIUM PHOSPHATE, 3.5% 1,2,3 REMARK 280 -HEPTANETRIOL, AND 0.1% LDAO PRECIPITANT SOLUTION; 1.4-1.5 M REMARK 280 POTASSIUM PHOSPHATE RESERVOIR SOLUTION, PH 8.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.39333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 124.78667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 124.78667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 62.39333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 33530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -236.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, M REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET H 1 REMARK 465 VAL H 2 REMARK 465 GLY H 3 REMARK 465 VAL H 4 REMARK 465 THR H 5 REMARK 465 ALA H 6 REMARK 465 PHE H 7 REMARK 465 GLY H 8 REMARK 465 ASN H 9 REMARK 465 PHE H 10 REMARK 465 VAL H 251 REMARK 465 VAL H 252 REMARK 465 ALA H 253 REMARK 465 ALA H 254 REMARK 465 MET H 255 REMARK 465 LEU H 256 REMARK 465 ALA H 257 REMARK 465 GLU H 258 REMARK 465 TYR H 259 REMARK 465 ALA H 260 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C11 U10 L 303 C10 LDA M 404 1.49 REMARK 500 O VAL M 124 OG SER M 128 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL L 31 -84.38 -101.51 REMARK 500 LEU L 133 -63.98 -130.33 REMARK 500 THR L 253 -70.57 -106.33 REMARK 500 THR M 21 -62.15 -92.71 REMARK 500 GLU M 22 -133.95 48.08 REMARK 500 PHE M 162 -60.93 -133.77 REMARK 500 ILE M 179 -71.58 -68.85 REMARK 500 ASN M 195 102.21 85.36 REMARK 500 ASP M 240 78.06 -160.87 REMARK 500 HIS M 301 10.49 44.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH L 429 DISTANCE = 7.18 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 U10 L 303 REMARK 610 BPH M 406 REMARK 610 CDL M 408 REMARK 610 BCL M 409 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE M 405 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS L 190 NE2 REMARK 620 2 HIS L 230 NE2 89.9 REMARK 620 3 HIS M 219 NE2 99.2 96.2 REMARK 620 4 GLU M 234 OE1 105.6 88.0 154.9 REMARK 620 5 GLU M 234 OE2 162.4 93.3 97.7 57.3 REMARK 620 6 HIS M 266 NE2 86.1 173.8 89.0 88.6 89.1 REMARK 620 N 1 2 3 4 5 DBREF 8VTJ H 1 260 UNP P0C0Y7 RCEH_CERSP 1 260 DBREF 8VTJ L 1 281 UNP P0C0Y8 RCEL_RHOSH 2 282 DBREF 8VTJ M 2 302 UNP P0C0Y9 RCEM_CERSP 3 303 SEQADV 8VTJ 9IJ M 210 UNP P0C0Y9 TYR 211 CONFLICT SEQADV 8VTJ VAL M 252 UNP P0C0Y9 TRP 253 CONFLICT SEQRES 1 H 260 MET VAL GLY VAL THR ALA PHE GLY ASN PHE ASP LEU ALA SEQRES 2 H 260 SER LEU ALA ILE TYR SER PHE TRP ILE PHE LEU ALA GLY SEQRES 3 H 260 LEU ILE TYR TYR LEU GLN THR GLU ASN MET ARG GLU GLY SEQRES 4 H 260 TYR PRO LEU GLU ASN GLU ASP GLY THR PRO ALA ALA ASN SEQRES 5 H 260 GLN GLY PRO PHE PRO LEU PRO LYS PRO LYS THR PHE ILE SEQRES 6 H 260 LEU PRO HIS GLY ARG GLY THR LEU THR VAL PRO GLY PRO SEQRES 7 H 260 GLU SER GLU ASP ARG PRO ILE ALA LEU ALA ARG THR ALA SEQRES 8 H 260 VAL SER GLU GLY PHE PRO HIS ALA PRO THR GLY ASP PRO SEQRES 9 H 260 MET LYS ASP GLY VAL GLY PRO ALA SER TRP VAL ALA ARG SEQRES 10 H 260 ARG ASP LEU PRO GLU LEU ASP GLY HIS GLY HIS ASN LYS SEQRES 11 H 260 ILE LYS PRO MET LYS ALA ALA ALA GLY PHE HIS VAL SER SEQRES 12 H 260 ALA GLY LYS ASN PRO ILE GLY LEU PRO VAL ARG GLY CYS SEQRES 13 H 260 ASP LEU GLU ILE ALA GLY LYS VAL VAL ASP ILE TRP VAL SEQRES 14 H 260 ASP ILE PRO GLU GLN MET ALA ARG PHE LEU GLU VAL GLU SEQRES 15 H 260 LEU LYS ASP GLY SER THR ARG LEU LEU PRO MET GLN MET SEQRES 16 H 260 VAL LYS VAL GLN SER ASN ARG VAL HIS VAL ASN ALA LEU SEQRES 17 H 260 SER SER ASP LEU PHE ALA GLY ILE PRO THR ILE LYS SER SEQRES 18 H 260 PRO THR GLU VAL THR LEU LEU GLU GLU ASP LYS ILE CYS SEQRES 19 H 260 GLY TYR VAL ALA GLY GLY LEU MET TYR ALA ALA PRO LYS SEQRES 20 H 260 ARG LYS SER VAL VAL ALA ALA MET LEU ALA GLU TYR ALA SEQRES 1 L 281 ALA LEU LEU SER PHE GLU ARG LYS TYR ARG VAL PRO GLY SEQRES 2 L 281 GLY THR LEU VAL GLY GLY ASN LEU PHE ASP PHE TRP VAL SEQRES 3 L 281 GLY PRO PHE TYR VAL GLY PHE PHE GLY VAL ALA THR PHE SEQRES 4 L 281 PHE PHE ALA ALA LEU GLY ILE ILE LEU ILE ALA TRP SER SEQRES 5 L 281 ALA VAL LEU GLN GLY THR TRP ASN PRO GLN LEU ILE SER SEQRES 6 L 281 VAL TYR PRO PRO ALA LEU GLU TYR GLY LEU GLY GLY ALA SEQRES 7 L 281 PRO LEU ALA LYS GLY GLY LEU TRP GLN ILE ILE THR ILE SEQRES 8 L 281 CYS ALA THR GLY ALA PHE VAL SER TRP ALA LEU ARG GLU SEQRES 9 L 281 VAL GLU ILE CYS ARG LYS LEU GLY ILE GLY TYR HIS ILE SEQRES 10 L 281 PRO PHE ALA PHE ALA PHE ALA ILE LEU ALA TYR LEU THR SEQRES 11 L 281 LEU VAL LEU PHE ARG PRO VAL MET MET GLY ALA TRP GLY SEQRES 12 L 281 TYR ALA PHE PRO TYR GLY ILE TRP THR HIS LEU ASP TRP SEQRES 13 L 281 VAL SER ASN THR GLY TYR THR TYR GLY ASN PHE HIS TYR SEQRES 14 L 281 ASN PRO ALA HIS MET ILE ALA ILE SER PHE PHE PHE THR SEQRES 15 L 281 ASN ALA LEU ALA LEU ALA LEU HIS GLY ALA LEU VAL LEU SEQRES 16 L 281 SER ALA ALA ASN PRO GLU LYS GLY LYS GLU MET ARG THR SEQRES 17 L 281 PRO ASP HIS GLU ASP THR PHE PHE ARG ASP LEU VAL GLY SEQRES 18 L 281 TYR SER ILE GLY THR LEU GLY ILE HIS ARG LEU GLY LEU SEQRES 19 L 281 LEU LEU SER LEU SER ALA VAL PHE PHE SER ALA LEU CYS SEQRES 20 L 281 MET ILE ILE THR GLY THR ILE TRP PHE ASP GLN TRP VAL SEQRES 21 L 281 ASP TRP TRP GLN TRP TRP VAL LYS LEU PRO TRP TRP ALA SEQRES 22 L 281 ASN ILE PRO GLY GLY ILE ASN GLY SEQRES 1 M 301 GLU TYR GLN ASN ILE PHE SER GLN VAL GLN VAL ARG GLY SEQRES 2 M 301 PRO ALA ASP LEU GLY MET THR GLU ASP VAL ASN LEU ALA SEQRES 3 M 301 ASN ARG SER GLY VAL GLY PRO PHE SER THR LEU LEU GLY SEQRES 4 M 301 TRP PHE GLY ASN ALA GLN LEU GLY PRO ILE TYR LEU GLY SEQRES 5 M 301 SER LEU GLY VAL LEU SER LEU PHE SER GLY LEU MET TRP SEQRES 6 M 301 PHE PHE THR ILE GLY ILE TRP PHE TRP TYR GLN ALA GLY SEQRES 7 M 301 TRP ASN PRO ALA VAL PHE LEU ARG ASP LEU PHE PHE PHE SEQRES 8 M 301 SER LEU GLU PRO PRO ALA PRO GLU TYR GLY LEU SER PHE SEQRES 9 M 301 ALA ALA PRO LEU LYS GLU GLY GLY LEU TRP LEU ILE ALA SEQRES 10 M 301 SER PHE PHE MET PHE VAL ALA VAL TRP SER TRP TRP GLY SEQRES 11 M 301 ARG THR TYR LEU ARG ALA GLN ALA LEU GLY MET GLY LYS SEQRES 12 M 301 HIS THR ALA TRP ALA PHE LEU SER ALA ILE TRP LEU TRP SEQRES 13 M 301 MET VAL LEU GLY PHE ILE ARG PRO ILE LEU MET GLY SER SEQRES 14 M 301 TRP SER GLU ALA VAL PRO TYR GLY ILE PHE SER HIS LEU SEQRES 15 M 301 ASP TRP THR ASN ASN PHE SER LEU VAL HIS GLY ASN LEU SEQRES 16 M 301 PHE TYR ASN PRO PHE HIS GLY LEU SER ILE ALA PHE LEU SEQRES 17 M 301 9IJ GLY SER ALA LEU LEU PHE ALA MET HIS GLY ALA THR SEQRES 18 M 301 ILE LEU ALA VAL SER ARG PHE GLY GLY GLU ARG GLU LEU SEQRES 19 M 301 GLU GLN ILE ALA ASP ARG GLY THR ALA ALA GLU ARG ALA SEQRES 20 M 301 ALA LEU PHE VAL ARG TRP THR MET GLY PHE ASN ALA THR SEQRES 21 M 301 MET GLU GLY ILE HIS ARG TRP ALA ILE TRP MET ALA VAL SEQRES 22 M 301 LEU VAL THR LEU THR GLY GLY ILE GLY ILE LEU LEU SER SEQRES 23 M 301 GLY THR VAL VAL ASP ASN TRP TYR VAL TRP GLY GLN ASN SEQRES 24 M 301 HIS GLY HET 9IJ M 210 13 HET BCL L 301 66 HET BPH L 302 65 HET U10 L 303 18 HET BCL L 304 66 HET CL L 305 1 HET BCL M 401 66 HET LDA M 402 16 HET LDA M 403 16 HET LDA M 404 16 HET FE M 405 1 HET BPH M 406 55 HET SPO M 407 42 HET CDL M 408 69 HET BCL M 409 51 HETNAM 9IJ 2-CYANO-L-PHENYLALANINE HETNAM BCL BACTERIOCHLOROPHYLL A HETNAM BPH BACTERIOPHEOPHYTIN A HETNAM U10 UBIQUINONE-10 HETNAM CL CHLORIDE ION HETNAM LDA LAURYL DIMETHYLAMINE-N-OXIDE HETNAM FE FE (III) ION HETNAM SPO SPHEROIDENE HETNAM CDL CARDIOLIPIN HETSYN U10 COENZYME Q10 HETSYN CDL DIPHOSPHATIDYL GLYCEROL; BIS-(1,2-DIACYL-SN-GLYCERO-3- HETSYN 2 CDL PHOSPHO)-1',3'-SN-GLYCEROL FORMUL 3 9IJ C10 H10 N2 O2 FORMUL 4 BCL 4(C55 H74 MG N4 O6) FORMUL 5 BPH 2(C55 H76 N4 O6) FORMUL 6 U10 C59 H90 O4 FORMUL 8 CL CL 1- FORMUL 10 LDA 3(C14 H31 N O) FORMUL 13 FE FE 3+ FORMUL 15 SPO C41 H60 O FORMUL 16 CDL C81 H156 O17 P2 2- FORMUL 18 HOH *111(H2 O) HELIX 1 AA1 ASP H 11 ASN H 35 1 25 HELIX 2 AA2 ASP H 103 GLY H 108 1 6 HELIX 3 AA3 VAL H 109 SER H 113 5 5 HELIX 4 AA4 LYS H 135 ALA H 137 5 3 HELIX 5 AA5 GLN H 194 VAL H 196 5 3 HELIX 6 AA6 SER H 209 PHE H 213 5 5 HELIX 7 AA7 THR H 226 ALA H 244 1 19 HELIX 8 AA8 ALA H 245 ARG H 248 5 4 HELIX 9 AA9 GLU L 6 ARG L 10 5 5 HELIX 10 AB1 VAL L 31 GLY L 57 1 27 HELIX 11 AB2 ALA L 70 GLY L 74 5 5 HELIX 12 AB3 PRO L 79 LYS L 82 5 4 HELIX 13 AB4 GLY L 83 GLY L 112 1 30 HELIX 14 AB5 TYR L 115 LEU L 133 1 19 HELIX 15 AB6 LEU L 133 GLY L 140 1 8 HELIX 16 AB7 ALA L 141 ALA L 145 5 5 HELIX 17 AB8 GLY L 149 THR L 163 1 15 HELIX 18 AB9 TYR L 164 GLY L 165 5 2 HELIX 19 AC1 ASN L 166 TYR L 169 5 4 HELIX 20 AC2 ASN L 170 ASN L 199 1 30 HELIX 21 AC3 THR L 208 GLY L 221 1 14 HELIX 22 AC4 ILE L 224 ILE L 250 1 27 HELIX 23 AC5 GLN L 258 TRP L 263 1 6 HELIX 24 AC6 TRP L 263 LYS L 268 1 6 HELIX 25 AC7 ASN M 25 ARG M 29 5 5 HELIX 26 AC8 SER M 36 TRP M 41 1 6 HELIX 27 AC9 GLY M 53 ALA M 78 1 26 HELIX 28 AD1 ASN M 81 ASP M 88 1 8 HELIX 29 AD2 LEU M 89 PHE M 92 5 4 HELIX 30 AD3 ALA M 98 GLY M 102 5 5 HELIX 31 AD4 PRO M 108 GLU M 111 5 4 HELIX 32 AD5 GLY M 112 GLY M 141 1 30 HELIX 33 AD6 LYS M 144 PHE M 162 1 19 HELIX 34 AD7 PHE M 162 GLY M 169 1 8 HELIX 35 AD8 SER M 170 ALA M 174 5 5 HELIX 36 AD9 GLY M 178 HIS M 193 1 16 HELIX 37 AE1 GLY M 194 TYR M 198 5 5 HELIX 38 AE2 ASN M 199 VAL M 226 1 28 HELIX 39 AE3 SER M 227 GLY M 230 5 4 HELIX 40 AE4 ARG M 233 ASP M 240 1 8 HELIX 41 AE5 GLY M 242 GLY M 257 1 16 HELIX 42 AE6 THR M 261 SER M 287 1 27 HELIX 43 AE7 ASN M 293 ASN M 300 1 8 SHEET 1 AA1 2 LYS H 62 ILE H 65 0 SHEET 2 AA1 2 THR H 72 VAL H 75 -1 O VAL H 75 N LYS H 62 SHEET 1 AA2 2 LEU H 87 ARG H 89 0 SHEET 2 AA2 2 HIS H 98 PRO H 100 -1 O ALA H 99 N ALA H 88 SHEET 1 AA3 4 ILE H 131 PRO H 133 0 SHEET 2 AA3 4 ILE H 160 ASP H 170 -1 O VAL H 169 N LYS H 132 SHEET 3 AA3 4 MET H 175 LEU H 183 -1 O PHE H 178 N TRP H 168 SHEET 4 AA3 4 THR H 188 PRO H 192 -1 O ARG H 189 N VAL H 181 SHEET 1 AA4 5 ILE H 131 PRO H 133 0 SHEET 2 AA4 5 ILE H 160 ASP H 170 -1 O VAL H 169 N LYS H 132 SHEET 3 AA4 5 PRO H 152 ARG H 154 -1 N VAL H 153 O GLY H 162 SHEET 4 AA4 5 VAL H 203 HIS H 204 1 O VAL H 203 N ARG H 154 SHEET 5 AA4 5 LYS H 197 VAL H 198 -1 N LYS H 197 O HIS H 204 SHEET 1 AA5 2 HIS H 141 GLY H 145 0 SHEET 2 AA5 2 VAL M 10 ARG M 13 -1 O GLN M 11 N SER H 143 SHEET 1 AA6 2 TRP L 25 VAL L 26 0 SHEET 2 AA6 2 PHE L 29 TYR L 30 -1 O PHE L 29 N VAL L 26 LINK C LEU M 209 N 9IJ M 210 1555 1555 1.33 LINK C 9IJ M 210 N GLY M 211 1555 1555 1.34 LINK NE2 HIS L 190 FE FE M 405 1555 1555 2.18 LINK NE2 HIS L 230 FE FE M 405 1555 1555 2.31 LINK NE2 HIS M 219 FE FE M 405 1555 1555 2.17 LINK OE1 GLU M 234 FE FE M 405 1555 1555 2.41 LINK OE2 GLU M 234 FE FE M 405 1555 1555 2.17 LINK NE2 HIS M 266 FE FE M 405 1555 1555 2.27 CISPEP 1 TYR H 40 PRO H 41 0 -7.26 CISPEP 2 VAL H 75 PRO H 76 0 -7.10 CISPEP 3 GLY M 48 PRO M 49 0 -7.06 CRYST1 141.290 141.290 187.180 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007078 0.004086 0.000000 0.00000 SCALE2 0.000000 0.008173 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005342 0.00000