HEADER DNA BINDING PROTEIN/DNA 02-FEB-24 8VWT TITLE OGG1 BOUND TO A NUCLEOSOME CONTAINING 8OXOG AT SHL-6 (COMPOSITE MAP) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE H3.2; COMPND 3 CHAIN: E, A; COMPND 4 SYNONYM: H3-CLUSTERED HISTONE 13,H3-CLUSTERED HISTONE 14,H3-CLUSTERED COMPND 5 HISTONE 15,HISTONE H3/M,HISTONE H3/O; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: HISTONE H4; COMPND 9 CHAIN: F, B; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: HISTONE H2A TYPE 1; COMPND 13 CHAIN: G, C; COMPND 14 SYNONYM: H2A.1,HISTONE H2A/PTL; COMPND 15 ENGINEERED: YES; COMPND 16 MOL_ID: 4; COMPND 17 MOLECULE: HISTONE H2B TYPE 1-C/E/F/G/I; COMPND 18 CHAIN: H, D; COMPND 19 SYNONYM: HISTONE H2B.1 A,HISTONE H2B.A,H2B/A,HISTONE H2B.G,H2B/G, COMPND 20 HISTONE H2B.H,H2B/H,HISTONE H2B.K,H2B/K,HISTONE H2B.L,H2B/L; COMPND 21 ENGINEERED: YES; COMPND 22 MOL_ID: 5; COMPND 23 MOLECULE: 601 I STRAND (NON-DAMAGED STRAND); COMPND 24 CHAIN: I; COMPND 25 ENGINEERED: YES; COMPND 26 MOL_ID: 6; COMPND 27 MOLECULE: 601 J STRAND (DAMAGED STRAND); COMPND 28 CHAIN: J; COMPND 29 ENGINEERED: YES; COMPND 30 MOL_ID: 7; COMPND 31 MOLECULE: N-GLYCOSYLASE/DNA LYASE; COMPND 32 CHAIN: K; COMPND 33 EC: 3.2.2.-,4.2.99.18; COMPND 34 ENGINEERED: YES; COMPND 35 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: H3C15, HIST2H3A, H3C14, H3F2, H3FM, HIST2H3C, H3C13, HIST2H3D; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: H4C1, H4/A, H4FA, HIST1H4A, H4C2, H4/I, H4FI, HIST1H4B, H4C3, SOURCE 13 H4/G, H4FG, HIST1H4C, H4C4, H4/B, H4FB, HIST1H4D, H4C5, H4/J, H4FJ, SOURCE 14 HIST1H4E, H4C6, H4/C, H4FC, HIST1H4F, H4C8, H4/H, H4FH, HIST1H4H, SOURCE 15 H4C9, H4/M, H4FM, HIST1H4I, H4C11, H4/E, H4FE, HIST1H4J, H4C12, SOURCE 16 H4/D, H4FD, HIST1H4K, H4C13, H4/K, H4FK, HIST1H4L, H4C14, H4/N, SOURCE 17 H4F2, H4FN, HIST2H4, HIST2H4A, H4C15, H4/O, H4FO, HIST2H4B, H4-16, SOURCE 18 HIST4H4; SOURCE 19 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 20 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 21 MOL_ID: 3; SOURCE 22 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 23 ORGANISM_COMMON: HUMAN; SOURCE 24 ORGANISM_TAXID: 9606; SOURCE 25 GENE: H2AC11, H2AFP, HIST1H2AG, H2AC13, H2AFC, HIST1H2AI, H2AC15, SOURCE 26 H2AFD, HIST1H2AK, H2AC16, H2AFI, HIST1H2AL, H2AC17, H2AFN, SOURCE 27 HIST1H2AM; SOURCE 28 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 29 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 30 MOL_ID: 4; SOURCE 31 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 32 ORGANISM_COMMON: HUMAN; SOURCE 33 ORGANISM_TAXID: 9606; SOURCE 34 GENE: H2BC4, H2BFL, HIST1H2BC, H2BC6, H2BFH, HIST1H2BE, H2BC7, SOURCE 35 H2BFG, HIST1H2BF, H2BC8, H2BFA, HIST1H2BG, H2BC10, H2BFK, HIST1H2BI; SOURCE 36 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 37 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 38 MOL_ID: 5; SOURCE 39 SYNTHETIC: YES; SOURCE 40 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 41 ORGANISM_TAXID: 32630; SOURCE 42 MOL_ID: 6; SOURCE 43 SYNTHETIC: YES; SOURCE 44 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 45 ORGANISM_TAXID: 32630; SOURCE 46 MOL_ID: 7; SOURCE 47 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 48 ORGANISM_COMMON: HUMAN; SOURCE 49 ORGANISM_TAXID: 9606; SOURCE 50 GENE: OGG1, MMH, MUTM, OGH1; SOURCE 51 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 52 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NUCLEOSOME, 8-OXO-GUANINE DNA GLYCOSYLASE I, DNA REPAIR, DNA BINDING KEYWDS 2 PROTEIN, DNA BINDING PROTEIN-DNA COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR T.M.WEAVER,J.A.LING,B.D.FREUDENTHAL REVDAT 1 30-OCT-24 8VWT 0 JRNL AUTH T.M.WEAVER,J.A.LING,B.D.FREUDENTHAL JRNL TITL OGG1 BOUND TO A NUCLEOSOME CONTAINING 8OXOG AT SHL-6 JRNL TITL 2 (COMPOSITE MAP) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : CRYOSPARC, CRYOSPARC, CRYOSPARC REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.300 REMARK 3 NUMBER OF PARTICLES : 32685 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8VWT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-FEB-24. REMARK 100 THE DEPOSITION ID IS D_1000280206. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : OGG1 BOUND TO A NUCLEOSOME REMARK 245 CONTAINING 8OXOG AT SHL-6 REMARK 245 (COMPOSITE MAP) REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.10 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 BIOQUANTUM (6K X REMARK 245 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 500.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 6000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: 11-MERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: 11-MERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, G, H, A, B, C, D, I, J, REMARK 350 AND CHAINS: K REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA E 1 REMARK 465 ARG E 2 REMARK 465 THR E 3 REMARK 465 LYS E 4 REMARK 465 GLN E 5 REMARK 465 THR E 6 REMARK 465 ALA E 7 REMARK 465 ARG E 8 REMARK 465 LYS E 9 REMARK 465 SER E 10 REMARK 465 THR E 11 REMARK 465 GLY E 12 REMARK 465 GLY E 13 REMARK 465 LYS E 14 REMARK 465 ALA E 15 REMARK 465 PRO E 16 REMARK 465 ARG E 17 REMARK 465 LYS E 18 REMARK 465 GLN E 19 REMARK 465 LEU E 20 REMARK 465 ALA E 21 REMARK 465 THR E 22 REMARK 465 LYS E 23 REMARK 465 ALA E 24 REMARK 465 ALA E 25 REMARK 465 ARG E 26 REMARK 465 LYS E 27 REMARK 465 SER E 28 REMARK 465 ALA E 29 REMARK 465 PRO E 30 REMARK 465 ALA E 31 REMARK 465 THR E 32 REMARK 465 GLY E 33 REMARK 465 GLY E 34 REMARK 465 VAL E 35 REMARK 465 LYS E 36 REMARK 465 LYS E 37 REMARK 465 ALA E 135 REMARK 465 SER F 1 REMARK 465 GLY F 2 REMARK 465 ARG F 3 REMARK 465 GLY F 4 REMARK 465 LYS F 5 REMARK 465 GLY F 6 REMARK 465 GLY F 7 REMARK 465 LYS F 8 REMARK 465 GLY F 9 REMARK 465 LEU F 10 REMARK 465 GLY F 11 REMARK 465 LYS F 12 REMARK 465 GLY F 13 REMARK 465 GLY F 14 REMARK 465 ALA F 15 REMARK 465 LYS F 16 REMARK 465 ARG F 17 REMARK 465 HIS F 18 REMARK 465 ARG F 19 REMARK 465 LYS F 20 REMARK 465 VAL F 21 REMARK 465 LEU F 22 REMARK 465 GLY F 102 REMARK 465 SER G 1 REMARK 465 GLY G 2 REMARK 465 ARG G 3 REMARK 465 GLY G 4 REMARK 465 LYS G 5 REMARK 465 GLN G 6 REMARK 465 GLY G 7 REMARK 465 GLY G 8 REMARK 465 LYS G 9 REMARK 465 ALA G 10 REMARK 465 THR G 120 REMARK 465 GLU G 121 REMARK 465 SER G 122 REMARK 465 HIS G 123 REMARK 465 HIS G 124 REMARK 465 LYS G 125 REMARK 465 ALA G 126 REMARK 465 LYS G 127 REMARK 465 GLY G 128 REMARK 465 LYS G 129 REMARK 465 PRO H 1 REMARK 465 GLU H 2 REMARK 465 PRO H 3 REMARK 465 ALA H 4 REMARK 465 LYS H 5 REMARK 465 SER H 6 REMARK 465 ALA H 7 REMARK 465 PRO H 8 REMARK 465 ALA H 9 REMARK 465 PRO H 10 REMARK 465 LYS H 11 REMARK 465 LYS H 12 REMARK 465 GLY H 13 REMARK 465 SER H 14 REMARK 465 LYS H 15 REMARK 465 LYS H 16 REMARK 465 ALA H 17 REMARK 465 VAL H 18 REMARK 465 THR H 19 REMARK 465 LYS H 20 REMARK 465 ALA H 21 REMARK 465 GLN H 22 REMARK 465 LYS H 23 REMARK 465 LYS H 24 REMARK 465 ASP H 25 REMARK 465 GLY H 26 REMARK 465 LYS H 27 REMARK 465 LYS H 28 REMARK 465 ARG H 29 REMARK 465 LYS H 125 REMARK 465 ALA A 1 REMARK 465 ARG A 2 REMARK 465 THR A 3 REMARK 465 LYS A 4 REMARK 465 GLN A 5 REMARK 465 THR A 6 REMARK 465 ALA A 7 REMARK 465 ARG A 8 REMARK 465 LYS A 9 REMARK 465 SER A 10 REMARK 465 THR A 11 REMARK 465 GLY A 12 REMARK 465 GLY A 13 REMARK 465 LYS A 14 REMARK 465 ALA A 15 REMARK 465 PRO A 16 REMARK 465 ARG A 17 REMARK 465 LYS A 18 REMARK 465 GLN A 19 REMARK 465 LEU A 20 REMARK 465 ALA A 21 REMARK 465 THR A 22 REMARK 465 LYS A 23 REMARK 465 ALA A 24 REMARK 465 ALA A 25 REMARK 465 ARG A 26 REMARK 465 LYS A 27 REMARK 465 SER A 28 REMARK 465 ALA A 29 REMARK 465 PRO A 30 REMARK 465 ALA A 31 REMARK 465 THR A 32 REMARK 465 GLY A 33 REMARK 465 GLY A 34 REMARK 465 VAL A 35 REMARK 465 LYS A 36 REMARK 465 LYS A 37 REMARK 465 ALA A 135 REMARK 465 SER B 1 REMARK 465 GLY B 2 REMARK 465 ARG B 3 REMARK 465 GLY B 4 REMARK 465 LYS B 5 REMARK 465 GLY B 6 REMARK 465 GLY B 7 REMARK 465 LYS B 8 REMARK 465 GLY B 9 REMARK 465 LEU B 10 REMARK 465 GLY B 11 REMARK 465 LYS B 12 REMARK 465 GLY B 13 REMARK 465 GLY B 14 REMARK 465 ALA B 15 REMARK 465 LYS B 16 REMARK 465 ARG B 17 REMARK 465 HIS B 18 REMARK 465 ARG B 19 REMARK 465 LYS B 20 REMARK 465 VAL B 21 REMARK 465 GLY B 102 REMARK 465 SER C 1 REMARK 465 GLY C 2 REMARK 465 ARG C 3 REMARK 465 GLY C 4 REMARK 465 LYS C 5 REMARK 465 GLN C 6 REMARK 465 GLY C 7 REMARK 465 GLY C 8 REMARK 465 LYS C 9 REMARK 465 ALA C 10 REMARK 465 ARG C 11 REMARK 465 ALA C 12 REMARK 465 LYS C 13 REMARK 465 ALA C 14 REMARK 465 THR C 120 REMARK 465 GLU C 121 REMARK 465 SER C 122 REMARK 465 HIS C 123 REMARK 465 HIS C 124 REMARK 465 LYS C 125 REMARK 465 ALA C 126 REMARK 465 LYS C 127 REMARK 465 GLY C 128 REMARK 465 LYS C 129 REMARK 465 PRO D 1 REMARK 465 GLU D 2 REMARK 465 PRO D 3 REMARK 465 ALA D 4 REMARK 465 LYS D 5 REMARK 465 SER D 6 REMARK 465 ALA D 7 REMARK 465 PRO D 8 REMARK 465 ALA D 9 REMARK 465 PRO D 10 REMARK 465 LYS D 11 REMARK 465 LYS D 12 REMARK 465 GLY D 13 REMARK 465 SER D 14 REMARK 465 LYS D 15 REMARK 465 LYS D 16 REMARK 465 ALA D 17 REMARK 465 VAL D 18 REMARK 465 THR D 19 REMARK 465 LYS D 20 REMARK 465 ALA D 21 REMARK 465 GLN D 22 REMARK 465 LYS D 23 REMARK 465 LYS D 24 REMARK 465 ASP D 25 REMARK 465 GLY D 26 REMARK 465 LYS D 27 REMARK 465 LYS D 28 REMARK 465 ARG D 29 REMARK 465 LYS D 30 REMARK 465 ARG D 31 REMARK 465 SER D 32 REMARK 465 LYS D 125 REMARK 465 MET K 1 REMARK 465 PRO K 2 REMARK 465 ALA K 3 REMARK 465 ARG K 4 REMARK 465 ALA K 5 REMARK 465 LEU K 6 REMARK 465 LEU K 7 REMARK 465 PRO K 8 REMARK 465 ARG K 9 REMARK 465 ARG K 10 REMARK 465 MET K 11 REMARK 465 VAL K 77 REMARK 465 TYR K 78 REMARK 465 ARG K 79 REMARK 465 GLY K 80 REMARK 465 ASP K 81 REMARK 465 LYS K 82 REMARK 465 GLN K 325 REMARK 465 SER K 326 REMARK 465 ARG K 327 REMARK 465 HIS K 328 REMARK 465 ALA K 329 REMARK 465 GLN K 330 REMARK 465 GLU K 331 REMARK 465 PRO K 332 REMARK 465 PRO K 333 REMARK 465 ALA K 334 REMARK 465 LYS K 335 REMARK 465 ARG K 336 REMARK 465 ARG K 337 REMARK 465 LYS K 338 REMARK 465 GLY K 339 REMARK 465 SER K 340 REMARK 465 LYS K 341 REMARK 465 GLY K 342 REMARK 465 PRO K 343 REMARK 465 GLU K 344 REMARK 465 GLY K 345 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT I 138 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DG J 37 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DT J 140 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU E 50 -18.86 71.37 REMARK 500 GLU E 59 -161.70 -77.41 REMARK 500 ARG F 95 73.26 -100.65 REMARK 500 GLN G 104 54.03 35.34 REMARK 500 SER H 32 160.47 67.00 REMARK 500 PRO H 50 1.80 -67.88 REMARK 500 HIS A 39 102.14 -165.74 REMARK 500 GLU A 50 -19.23 76.43 REMARK 500 LEU A 61 -3.70 67.91 REMARK 500 THR B 96 71.18 49.54 REMARK 500 ASN C 38 56.88 36.22 REMARK 500 PRO D 103 -176.91 -68.90 REMARK 500 CYS K 28 106.43 -171.21 REMARK 500 THR K 69 -159.21 -105.02 REMARK 500 LEU K 170 -99.30 -97.33 REMARK 500 ASP K 174 -125.48 60.11 REMARK 500 LYS K 261 78.28 -110.90 REMARK 500 GLN K 287 -62.20 -93.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-43597 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-43598 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-43599 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-43596 RELATED DB: EMDB REMARK 900 OGG1 BOUND TO A NUCLEOSOME CONTAINING 8OXOG AT SHL-6 (COMPOSITE MAP) DBREF 8VWT E 1 135 UNP Q71DI3 H32_HUMAN 2 136 DBREF 8VWT F 1 102 UNP P62805 H4_HUMAN 2 103 DBREF 8VWT G 1 129 UNP P0C0S8 H2A1_HUMAN 2 130 DBREF 8VWT H 1 125 UNP P62807 H2B1C_HUMAN 2 126 DBREF 8VWT A 1 135 UNP Q71DI3 H32_HUMAN 2 136 DBREF 8VWT B 1 102 UNP P62805 H4_HUMAN 2 103 DBREF 8VWT C 1 129 UNP P0C0S8 H2A1_HUMAN 2 130 DBREF 8VWT D 1 125 UNP P62807 H2B1C_HUMAN 2 126 DBREF 8VWT I 1 147 PDB 8VWT 8VWT 1 147 DBREF 8VWT J 1 147 PDB 8VWT 8VWT 1 147 DBREF 8VWT K 1 345 UNP O15527 OGG1_HUMAN 1 345 SEQADV 8VWT ALA E 110 UNP Q71DI3 CYS 111 ENGINEERED MUTATION SEQADV 8VWT ALA A 110 UNP Q71DI3 CYS 111 ENGINEERED MUTATION SEQADV 8VWT GLN K 249 UNP O15527 LYS 249 ENGINEERED MUTATION SEQRES 1 E 135 ALA ARG THR LYS GLN THR ALA ARG LYS SER THR GLY GLY SEQRES 2 E 135 LYS ALA PRO ARG LYS GLN LEU ALA THR LYS ALA ALA ARG SEQRES 3 E 135 LYS SER ALA PRO ALA THR GLY GLY VAL LYS LYS PRO HIS SEQRES 4 E 135 ARG TYR ARG PRO GLY THR VAL ALA LEU ARG GLU ILE ARG SEQRES 5 E 135 ARG TYR GLN LYS SER THR GLU LEU LEU ILE ARG LYS LEU SEQRES 6 E 135 PRO PHE GLN ARG LEU VAL ARG GLU ILE ALA GLN ASP PHE SEQRES 7 E 135 LYS THR ASP LEU ARG PHE GLN SER SER ALA VAL MET ALA SEQRES 8 E 135 LEU GLN GLU ALA SER GLU ALA TYR LEU VAL GLY LEU PHE SEQRES 9 E 135 GLU ASP THR ASN LEU ALA ALA ILE HIS ALA LYS ARG VAL SEQRES 10 E 135 THR ILE MET PRO LYS ASP ILE GLN LEU ALA ARG ARG ILE SEQRES 11 E 135 ARG GLY GLU ARG ALA SEQRES 1 F 102 SER GLY ARG GLY LYS GLY GLY LYS GLY LEU GLY LYS GLY SEQRES 2 F 102 GLY ALA LYS ARG HIS ARG LYS VAL LEU ARG ASP ASN ILE SEQRES 3 F 102 GLN GLY ILE THR LYS PRO ALA ILE ARG ARG LEU ALA ARG SEQRES 4 F 102 ARG GLY GLY VAL LYS ARG ILE SER GLY LEU ILE TYR GLU SEQRES 5 F 102 GLU THR ARG GLY VAL LEU LYS VAL PHE LEU GLU ASN VAL SEQRES 6 F 102 ILE ARG ASP ALA VAL THR TYR THR GLU HIS ALA LYS ARG SEQRES 7 F 102 LYS THR VAL THR ALA MET ASP VAL VAL TYR ALA LEU LYS SEQRES 8 F 102 ARG GLN GLY ARG THR LEU TYR GLY PHE GLY GLY SEQRES 1 G 129 SER GLY ARG GLY LYS GLN GLY GLY LYS ALA ARG ALA LYS SEQRES 2 G 129 ALA LYS THR ARG SER SER ARG ALA GLY LEU GLN PHE PRO SEQRES 3 G 129 VAL GLY ARG VAL HIS ARG LEU LEU ARG LYS GLY ASN TYR SEQRES 4 G 129 ALA GLU ARG VAL GLY ALA GLY ALA PRO VAL TYR LEU ALA SEQRES 5 G 129 ALA VAL LEU GLU TYR LEU THR ALA GLU ILE LEU GLU LEU SEQRES 6 G 129 ALA GLY ASN ALA ALA ARG ASP ASN LYS LYS THR ARG ILE SEQRES 7 G 129 ILE PRO ARG HIS LEU GLN LEU ALA ILE ARG ASN ASP GLU SEQRES 8 G 129 GLU LEU ASN LYS LEU LEU GLY LYS VAL THR ILE ALA GLN SEQRES 9 G 129 GLY GLY VAL LEU PRO ASN ILE GLN ALA VAL LEU LEU PRO SEQRES 10 G 129 LYS LYS THR GLU SER HIS HIS LYS ALA LYS GLY LYS SEQRES 1 H 125 PRO GLU PRO ALA LYS SER ALA PRO ALA PRO LYS LYS GLY SEQRES 2 H 125 SER LYS LYS ALA VAL THR LYS ALA GLN LYS LYS ASP GLY SEQRES 3 H 125 LYS LYS ARG LYS ARG SER ARG LYS GLU SER TYR SER VAL SEQRES 4 H 125 TYR VAL TYR LYS VAL LEU LYS GLN VAL HIS PRO ASP THR SEQRES 5 H 125 GLY ILE SER SER LYS ALA MET GLY ILE MET ASN SER PHE SEQRES 6 H 125 VAL ASN ASP ILE PHE GLU ARG ILE ALA GLY GLU ALA SER SEQRES 7 H 125 ARG LEU ALA HIS TYR ASN LYS ARG SER THR ILE THR SER SEQRES 8 H 125 ARG GLU ILE GLN THR ALA VAL ARG LEU LEU LEU PRO GLY SEQRES 9 H 125 GLU LEU ALA LYS HIS ALA VAL SER GLU GLY THR LYS ALA SEQRES 10 H 125 VAL THR LYS TYR THR SER SER LYS SEQRES 1 A 135 ALA ARG THR LYS GLN THR ALA ARG LYS SER THR GLY GLY SEQRES 2 A 135 LYS ALA PRO ARG LYS GLN LEU ALA THR LYS ALA ALA ARG SEQRES 3 A 135 LYS SER ALA PRO ALA THR GLY GLY VAL LYS LYS PRO HIS SEQRES 4 A 135 ARG TYR ARG PRO GLY THR VAL ALA LEU ARG GLU ILE ARG SEQRES 5 A 135 ARG TYR GLN LYS SER THR GLU LEU LEU ILE ARG LYS LEU SEQRES 6 A 135 PRO PHE GLN ARG LEU VAL ARG GLU ILE ALA GLN ASP PHE SEQRES 7 A 135 LYS THR ASP LEU ARG PHE GLN SER SER ALA VAL MET ALA SEQRES 8 A 135 LEU GLN GLU ALA SER GLU ALA TYR LEU VAL GLY LEU PHE SEQRES 9 A 135 GLU ASP THR ASN LEU ALA ALA ILE HIS ALA LYS ARG VAL SEQRES 10 A 135 THR ILE MET PRO LYS ASP ILE GLN LEU ALA ARG ARG ILE SEQRES 11 A 135 ARG GLY GLU ARG ALA SEQRES 1 B 102 SER GLY ARG GLY LYS GLY GLY LYS GLY LEU GLY LYS GLY SEQRES 2 B 102 GLY ALA LYS ARG HIS ARG LYS VAL LEU ARG ASP ASN ILE SEQRES 3 B 102 GLN GLY ILE THR LYS PRO ALA ILE ARG ARG LEU ALA ARG SEQRES 4 B 102 ARG GLY GLY VAL LYS ARG ILE SER GLY LEU ILE TYR GLU SEQRES 5 B 102 GLU THR ARG GLY VAL LEU LYS VAL PHE LEU GLU ASN VAL SEQRES 6 B 102 ILE ARG ASP ALA VAL THR TYR THR GLU HIS ALA LYS ARG SEQRES 7 B 102 LYS THR VAL THR ALA MET ASP VAL VAL TYR ALA LEU LYS SEQRES 8 B 102 ARG GLN GLY ARG THR LEU TYR GLY PHE GLY GLY SEQRES 1 C 129 SER GLY ARG GLY LYS GLN GLY GLY LYS ALA ARG ALA LYS SEQRES 2 C 129 ALA LYS THR ARG SER SER ARG ALA GLY LEU GLN PHE PRO SEQRES 3 C 129 VAL GLY ARG VAL HIS ARG LEU LEU ARG LYS GLY ASN TYR SEQRES 4 C 129 ALA GLU ARG VAL GLY ALA GLY ALA PRO VAL TYR LEU ALA SEQRES 5 C 129 ALA VAL LEU GLU TYR LEU THR ALA GLU ILE LEU GLU LEU SEQRES 6 C 129 ALA GLY ASN ALA ALA ARG ASP ASN LYS LYS THR ARG ILE SEQRES 7 C 129 ILE PRO ARG HIS LEU GLN LEU ALA ILE ARG ASN ASP GLU SEQRES 8 C 129 GLU LEU ASN LYS LEU LEU GLY LYS VAL THR ILE ALA GLN SEQRES 9 C 129 GLY GLY VAL LEU PRO ASN ILE GLN ALA VAL LEU LEU PRO SEQRES 10 C 129 LYS LYS THR GLU SER HIS HIS LYS ALA LYS GLY LYS SEQRES 1 D 125 PRO GLU PRO ALA LYS SER ALA PRO ALA PRO LYS LYS GLY SEQRES 2 D 125 SER LYS LYS ALA VAL THR LYS ALA GLN LYS LYS ASP GLY SEQRES 3 D 125 LYS LYS ARG LYS ARG SER ARG LYS GLU SER TYR SER VAL SEQRES 4 D 125 TYR VAL TYR LYS VAL LEU LYS GLN VAL HIS PRO ASP THR SEQRES 5 D 125 GLY ILE SER SER LYS ALA MET GLY ILE MET ASN SER PHE SEQRES 6 D 125 VAL ASN ASP ILE PHE GLU ARG ILE ALA GLY GLU ALA SER SEQRES 7 D 125 ARG LEU ALA HIS TYR ASN LYS ARG SER THR ILE THR SER SEQRES 8 D 125 ARG GLU ILE GLN THR ALA VAL ARG LEU LEU LEU PRO GLY SEQRES 9 D 125 GLU LEU ALA LYS HIS ALA VAL SER GLU GLY THR LYS ALA SEQRES 10 D 125 VAL THR LYS TYR THR SER SER LYS SEQRES 1 I 147 DA DT DC DG DA DG DA DA DT DC DC DC DG SEQRES 2 I 147 DG DT DG DC DC DG DA DG DG DC DC DG DC SEQRES 3 I 147 DT DC DA DA DT DT DG DG DT DC DG DT DA SEQRES 4 I 147 DG DA DC DA DG DC DT DC DT DA DG DC DA SEQRES 5 I 147 DC DC DG DC DT DT DA DA DA DC DG DC DA SEQRES 6 I 147 DC DG DT DA DC DG DC DG DC DT DG DT DC SEQRES 7 I 147 DC DC DC DC DG DC DG DT DT DT DT DA DA SEQRES 8 I 147 DC DC DG DC DC DA DA DG DG DG DG DA DT SEQRES 9 I 147 DT DA DC DT DC DC DC DT DA DG DT DC DT SEQRES 10 I 147 DC DC DA DG DG DC DA DC DG DT DG DT DC SEQRES 11 I 147 DA DG DA DT DC DT DA DT DA DC DA DT DC SEQRES 12 I 147 DC DG DA DT SEQRES 1 J 147 DA DT DC DG DG DA DT DG DT DA DT DA 8OG SEQRES 2 J 147 DA DT DC DT DG DA DC DA DC DG DT DG DC SEQRES 3 J 147 DC DT DG DG DA DG DA DC DT DA DG DG DG SEQRES 4 J 147 DA DG DT DA DA DT DC DC DC DC DT DT DG SEQRES 5 J 147 DG DC DG DG DT DT DA DA DA DA DC DG DC SEQRES 6 J 147 DG DG DG DG DG DA DC DA DG DC DG DC DG SEQRES 7 J 147 DT DA DC DG DT DG DC DG DT DT DT DA DA SEQRES 8 J 147 DG DC DG DG DT DG DC DT DA DG DA DG DC SEQRES 9 J 147 DT DG DT DC DT DA DC DG DA DC DC DA DA SEQRES 10 J 147 DT DT DG DA DG DC DG DG DC DC DT DC DG SEQRES 11 J 147 DG DC DA DC DC DG DG DG DA DT DT DC DT SEQRES 12 J 147 DC DG DA DT SEQRES 1 K 345 MET PRO ALA ARG ALA LEU LEU PRO ARG ARG MET GLY HIS SEQRES 2 K 345 ARG THR LEU ALA SER THR PRO ALA LEU TRP ALA SER ILE SEQRES 3 K 345 PRO CYS PRO ARG SER GLU LEU ARG LEU ASP LEU VAL LEU SEQRES 4 K 345 PRO SER GLY GLN SER PHE ARG TRP ARG GLU GLN SER PRO SEQRES 5 K 345 ALA HIS TRP SER GLY VAL LEU ALA ASP GLN VAL TRP THR SEQRES 6 K 345 LEU THR GLN THR GLU GLU GLN LEU HIS CYS THR VAL TYR SEQRES 7 K 345 ARG GLY ASP LYS SER GLN ALA SER ARG PRO THR PRO ASP SEQRES 8 K 345 GLU LEU GLU ALA VAL ARG LYS TYR PHE GLN LEU ASP VAL SEQRES 9 K 345 THR LEU ALA GLN LEU TYR HIS HIS TRP GLY SER VAL ASP SEQRES 10 K 345 SER HIS PHE GLN GLU VAL ALA GLN LYS PHE GLN GLY VAL SEQRES 11 K 345 ARG LEU LEU ARG GLN ASP PRO ILE GLU CYS LEU PHE SER SEQRES 12 K 345 PHE ILE CYS SER SER ASN ASN ASN ILE ALA ARG ILE THR SEQRES 13 K 345 GLY MET VAL GLU ARG LEU CYS GLN ALA PHE GLY PRO ARG SEQRES 14 K 345 LEU ILE GLN LEU ASP ASP VAL THR TYR HIS GLY PHE PRO SEQRES 15 K 345 SER LEU GLN ALA LEU ALA GLY PRO GLU VAL GLU ALA HIS SEQRES 16 K 345 LEU ARG LYS LEU GLY LEU GLY TYR ARG ALA ARG TYR VAL SEQRES 17 K 345 SER ALA SER ALA ARG ALA ILE LEU GLU GLU GLN GLY GLY SEQRES 18 K 345 LEU ALA TRP LEU GLN GLN LEU ARG GLU SER SER TYR GLU SEQRES 19 K 345 GLU ALA HIS LYS ALA LEU CYS ILE LEU PRO GLY VAL GLY SEQRES 20 K 345 THR GLN VAL ALA ASP CYS ILE CYS LEU MET ALA LEU ASP SEQRES 21 K 345 LYS PRO GLN ALA VAL PRO VAL ASP VAL HIS MET TRP HIS SEQRES 22 K 345 ILE ALA GLN ARG ASP TYR SER TRP HIS PRO THR THR SER SEQRES 23 K 345 GLN ALA LYS GLY PRO SER PRO GLN THR ASN LYS GLU LEU SEQRES 24 K 345 GLY ASN PHE PHE ARG SER LEU TRP GLY PRO TYR ALA GLY SEQRES 25 K 345 TRP ALA GLN ALA VAL LEU PHE SER ALA ASP LEU ARG GLN SEQRES 26 K 345 SER ARG HIS ALA GLN GLU PRO PRO ALA LYS ARG ARG LYS SEQRES 27 K 345 GLY SER LYS GLY PRO GLU GLY HET 8OG J 13 23 HETNAM 8OG 8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE HETSYN 8OG 8-OXO-7,8-DIHYDRO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE FORMUL 10 8OG C10 H14 N5 O8 P HELIX 1 AA1 GLY E 44 ARG E 49 1 6 HELIX 2 AA2 GLU E 50 SER E 57 1 8 HELIX 3 AA3 ARG E 63 ASP E 77 1 15 HELIX 4 AA4 GLN E 85 ALA E 114 1 30 HELIX 5 AA5 MET E 120 ARG E 131 1 12 HELIX 6 AA6 ASN F 25 ILE F 29 5 5 HELIX 7 AA7 THR F 30 GLY F 42 1 13 HELIX 8 AA8 LEU F 49 ALA F 76 1 28 HELIX 9 AA9 THR F 82 GLN F 93 1 12 HELIX 10 AB1 THR G 16 ALA G 21 1 6 HELIX 11 AB2 VAL G 27 GLY G 37 1 11 HELIX 12 AB3 ALA G 45 ASN G 73 1 29 HELIX 13 AB4 ILE G 79 ASP G 90 1 12 HELIX 14 AB5 ASP G 90 LEU G 97 1 8 HELIX 15 AB6 GLN G 112 LEU G 116 5 5 HELIX 16 AB7 TYR H 37 HIS H 49 1 13 HELIX 17 AB8 SER H 55 ASN H 84 1 30 HELIX 18 AB9 THR H 90 LEU H 102 1 13 HELIX 19 AC1 GLY H 104 SER H 123 1 20 HELIX 20 AC2 GLY A 44 SER A 57 1 14 HELIX 21 AC3 ARG A 63 LYS A 79 1 17 HELIX 22 AC4 GLN A 85 ALA A 114 1 30 HELIX 23 AC5 MET A 120 GLY A 132 1 13 HELIX 24 AC6 ASN B 25 ILE B 29 5 5 HELIX 25 AC7 THR B 30 GLY B 41 1 12 HELIX 26 AC8 LEU B 49 ALA B 76 1 28 HELIX 27 AC9 THR B 82 GLY B 94 1 13 HELIX 28 AD1 THR C 16 ALA C 21 1 6 HELIX 29 AD2 PRO C 26 GLY C 37 1 12 HELIX 30 AD3 ALA C 45 ASN C 73 1 29 HELIX 31 AD4 ILE C 79 ASN C 89 1 11 HELIX 32 AD5 GLU C 92 LEU C 97 1 6 HELIX 33 AD6 TYR D 37 HIS D 49 1 13 HELIX 34 AD7 SER D 55 ASN D 84 1 30 HELIX 35 AD8 THR D 90 LEU D 102 1 13 HELIX 36 AD9 PRO D 103 SER D 124 1 22 HELIX 37 AE1 THR K 19 TRP K 23 5 5 HELIX 38 AE2 ARG K 34 LEU K 39 1 6 HELIX 39 AE3 THR K 89 PHE K 100 1 12 HELIX 40 AE4 THR K 105 ASP K 117 1 13 HELIX 41 AE5 ASP K 117 PHE K 127 1 11 HELIX 42 AE6 ASP K 136 SER K 148 1 13 HELIX 43 AE7 ASN K 151 GLY K 167 1 17 HELIX 44 AE8 SER K 183 ALA K 188 1 6 HELIX 45 AE9 GLU K 191 LEU K 199 1 9 HELIX 46 AF1 TYR K 203 GLU K 218 1 16 HELIX 47 AF2 GLY K 220 LEU K 228 1 9 HELIX 48 AF3 SER K 232 CYS K 241 1 10 HELIX 49 AF4 GLY K 247 LEU K 259 1 13 HELIX 50 AF5 ASP K 268 SER K 280 1 13 HELIX 51 AF6 SER K 292 GLY K 308 1 17 HELIX 52 AF7 TYR K 310 ARG K 324 1 15 SHEET 1 AA1 2 ARG E 83 PHE E 84 0 SHEET 2 AA1 2 THR F 80 VAL F 81 1 O VAL F 81 N ARG E 83 SHEET 1 AA2 2 THR E 118 ILE E 119 0 SHEET 2 AA2 2 ARG F 45 ILE F 46 1 O ARG F 45 N ILE E 119 SHEET 1 AA3 2 THR F 96 TYR F 98 0 SHEET 2 AA3 2 VAL C 100 ILE C 102 1 O THR C 101 N TYR F 98 SHEET 1 AA4 2 ARG G 42 VAL G 43 0 SHEET 2 AA4 2 THR H 88 ILE H 89 1 O ILE H 89 N ARG G 42 SHEET 1 AA5 2 ARG A 83 PHE A 84 0 SHEET 2 AA5 2 THR B 80 VAL B 81 1 O VAL B 81 N ARG A 83 SHEET 1 AA6 2 THR A 118 ILE A 119 0 SHEET 2 AA6 2 ARG B 45 ILE B 46 1 O ARG B 45 N ILE A 119 SHEET 1 AA7 2 ARG C 42 VAL C 43 0 SHEET 2 AA7 2 THR D 88 ILE D 89 1 O ILE D 89 N ARG C 42 SHEET 1 AA8 2 ARG C 77 ILE C 78 0 SHEET 2 AA8 2 GLY D 53 ILE D 54 1 O GLY D 53 N ILE C 78 SHEET 1 AA9 5 ALA K 24 PRO K 27 0 SHEET 2 AA9 5 GLN K 72 THR K 76 -1 O CYS K 75 N ALA K 24 SHEET 3 AA9 5 VAL K 63 GLN K 68 -1 N THR K 67 O HIS K 74 SHEET 4 AA9 5 HIS K 54 VAL K 58 -1 N TRP K 55 O LEU K 66 SHEET 5 AA9 5 ARG K 48 SER K 51 -1 N ARG K 48 O SER K 56 SHEET 1 AB1 2 ARG K 169 LEU K 173 0 SHEET 2 AB1 2 VAL K 176 HIS K 179 -1 O TYR K 178 N LEU K 170 LINK O3' DA J 12 P 8OG J 13 1555 1555 1.61 LINK O3' 8OG J 13 P DA J 14 1555 1555 1.61 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000