HEADER OXIDOREDUCTASE 13-FEB-24 8W0N TITLE IRED CRYSTAL STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: IRED; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEIN ENGINEERING, IMINE REDUCTASE, SCALABLE MANUFACTURING, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR T.S.PEAT,J.NEWMAN REVDAT 1 24-JUL-24 8W0N 0 JRNL AUTH X.YI,F.KLEINBECK,C.CHING,L.BOGHOSPOR,S.GOMES,O.ALVIZO, JRNL AUTH 2 T.ALLMENDINGER,J.FELL,N.SUBRAMANIAN,M.LI,R.GARCIA,J.RIGGINS, JRNL AUTH 3 D.ENTWISTLE,Y.RICHTER,D.GSCHWEND,L.LAUENER,T.S.PEAT, JRNL AUTH 4 H.LEBHAR,T.SCHLAMA,T.RUCH JRNL TITL ENHANCING THE IMINE REDUCTASE ACTIVITY OF A PROMISCUOUS JRNL TITL 2 GLUCOSE DEHYDROGENASE FOR SCALABLE MANUFACTURING OF A CHIRAL JRNL TITL 3 NEPRILYSIN INHIBITOR PRECURSOR JRNL REF ACS CATALYSIS V. 14 7087 2024 JRNL REFN ESSN 2155-5435 JRNL DOI 10.1021/ACSCATAL.3C05615 REMARK 2 REMARK 2 RESOLUTION. 1.37 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0405 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.37 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 102507 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.119 REMARK 3 FREE R VALUE : 0.144 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.032 REMARK 3 FREE R VALUE TEST SET COUNT : 5158 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.37 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.40 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6910 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.03 REMARK 3 BIN R VALUE (WORKING SET) : 0.1830 REMARK 3 BIN FREE R VALUE SET COUNT : 359 REMARK 3 BIN FREE R VALUE : 0.2130 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3894 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 104 REMARK 3 SOLVENT ATOMS : 462 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.68800 REMARK 3 B22 (A**2) : 0.89900 REMARK 3 B33 (A**2) : -0.97700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.52300 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.048 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.044 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.025 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.327 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.982 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.976 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4303 ; 0.012 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 4104 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5878 ; 1.667 ; 1.642 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9509 ; 0.575 ; 1.568 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 558 ; 5.873 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 13 ; 5.663 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 732 ;14.491 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 658 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4978 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 888 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 922 ; 0.230 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 158 ; 0.213 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2180 ; 0.182 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 309 ; 0.149 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2175 ; 1.238 ; 1.575 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2175 ; 1.229 ; 1.575 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2752 ; 1.552 ; 2.835 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2753 ; 1.552 ; 2.836 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2128 ; 1.745 ; 1.874 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2125 ; 1.745 ; 1.873 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3126 ; 2.326 ; 3.317 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3121 ; 2.327 ; 3.314 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 8407 ; 4.256 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 258 NULL REMARK 3 1 A 1 A 258 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8W0N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-FEB-24. REMARK 100 THE DEPOSITION ID IS D_1000281600. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAR-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 102543 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.370 REMARK 200 RESOLUTION RANGE LOW (A) : 48.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 20.30 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.37 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.7 REMARK 200 DATA REDUNDANCY IN SHELL : 18.00 REMARK 200 R MERGE FOR SHELL (I) : 0.98500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS WERE FOUND IN 20% PEG3350 REMARK 280 WITH 200 MM SODIUM DIHYDROGEN PHOSPHATE WHEN SET UP IN SITTING REMARK 280 DROP PLATES WITH 200 NL RESERVOIR AND 200 NL OF 12 MG/ML PROTEIN REMARK 280 IN SD-2 PLATES AT ROOM TEMPERATURE., PH 5.1, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 32.42200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 63.84900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 32.42200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 63.84900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 19390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -145.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 567 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 607 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 610 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 629 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 259 REMARK 465 ARG A 260 REMARK 465 GLU A 261 REMARK 465 GLY B 259 REMARK 465 ARG B 260 REMARK 465 GLU B 261 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 419 O HOH A 573 1.94 REMARK 500 OD1 ASN B 192 O HOH B 401 1.97 REMARK 500 O HOH B 411 O HOH B 575 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 430 O HOH A 430 2556 1.92 REMARK 500 OE2 GLU B 133 O HOH B 583 2556 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 69 CD GLU A 69 OE1 -0.076 REMARK 500 GLU B 70 CD GLU B 70 OE2 0.070 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 26 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 125 NE - CZ - NH1 ANGL. DEV. = -5.1 DEGREES REMARK 500 ARG A 125 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG B 125 NE - CZ - NH1 ANGL. DEV. = -6.9 DEGREES REMARK 500 ARG B 125 NE - CZ - NH2 ANGL. DEV. = 4.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 97 114.82 -166.39 REMARK 500 SER A 144 -134.96 -99.33 REMARK 500 SER A 144 -134.96 -99.62 REMARK 500 TRP A 154 -0.60 74.79 REMARK 500 ASP A 247 11.94 -143.08 REMARK 500 LEU B 117 -62.01 -107.14 REMARK 500 SER B 144 -134.18 -97.01 REMARK 500 SER B 144 -134.18 -95.73 REMARK 500 ASP B 247 12.26 -143.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 622 DISTANCE = 5.82 ANGSTROMS DBREF 8W0N A 1 261 PDB 8W0N 8W0N 1 261 DBREF 8W0N B 1 261 PDB 8W0N 8W0N 1 261 SEQRES 1 A 261 MET TYR PRO ASP LEU LYS GLY LYS VAL VAL ALA ILE THR SEQRES 2 A 261 GLY ALA ALA THR GLY LEU GLY LYS ALA MET ALA ILE ARG SEQRES 3 A 261 PHE GLY LYS GLU HIS ALA LYS VAL VAL ILE ASN TYR TYR SEQRES 4 A 261 SER ASN THR GLN ASP PRO ASN ALA VAL LYS GLU GLU VAL SEQRES 5 A 261 ILE LYS ALA GLY GLY GLU ALA VAL VAL VAL GLN GLY ASP SEQRES 6 A 261 VAL THR LYS GLU GLU ASP VAL LYS ASN ILE VAL GLN THR SEQRES 7 A 261 ALA ILE LYS GLU PHE GLY THR LEU ASP ILE MET ILE ASN SEQRES 8 A 261 ASN ALA GLY VAL GLU ASN PRO VAL PRO SER HIS GLU LEU SEQRES 9 A 261 PRO LEU LYS ASP TRP ASP LYS VAL ILE ALA THR ASN LEU SEQRES 10 A 261 THR GLY ALA PHE LEU GLY SER ARG GLU ALA ILE LYS TYR SEQRES 11 A 261 PHE VAL GLU ASN ASP ILE LYS GLY ASN VAL ILE ASN MET SEQRES 12 A 261 SER SER VAL ARG GLU VAL ILE PRO TRP PRO TRP ASN VAL SEQRES 13 A 261 HIS TYR ALA SER SER LYS GLY GLY MET LYS LEU MET THR SEQRES 14 A 261 LYS THR LEU ALA LEU GLU TYR ALA SER ASN GLY ILE ARG SEQRES 15 A 261 VAL ASN ASN ILE GLY PRO GLY ALA ILE ASN THR THR GLY SEQRES 16 A 261 ASN ALA GLU ARG TRP ALA ASP PRO LYS LEU LYS ALA ASP SEQRES 17 A 261 VAL GLU SER MET ILE PRO MET GLY TYR ILE GLY GLU PRO SEQRES 18 A 261 GLU GLU ILE ALA ALA VAL ALA ALA TRP LEU ALA SER LYS SEQRES 19 A 261 GLU ALA SER TYR VAL THR GLY ILE THR LEU PHE ALA ASP SEQRES 20 A 261 GLY GLY MET THR LEU GLY PRO ALA PHE GLU PRO GLY ARG SEQRES 21 A 261 GLU SEQRES 1 B 261 MET TYR PRO ASP LEU LYS GLY LYS VAL VAL ALA ILE THR SEQRES 2 B 261 GLY ALA ALA THR GLY LEU GLY LYS ALA MET ALA ILE ARG SEQRES 3 B 261 PHE GLY LYS GLU HIS ALA LYS VAL VAL ILE ASN TYR TYR SEQRES 4 B 261 SER ASN THR GLN ASP PRO ASN ALA VAL LYS GLU GLU VAL SEQRES 5 B 261 ILE LYS ALA GLY GLY GLU ALA VAL VAL VAL GLN GLY ASP SEQRES 6 B 261 VAL THR LYS GLU GLU ASP VAL LYS ASN ILE VAL GLN THR SEQRES 7 B 261 ALA ILE LYS GLU PHE GLY THR LEU ASP ILE MET ILE ASN SEQRES 8 B 261 ASN ALA GLY VAL GLU ASN PRO VAL PRO SER HIS GLU LEU SEQRES 9 B 261 PRO LEU LYS ASP TRP ASP LYS VAL ILE ALA THR ASN LEU SEQRES 10 B 261 THR GLY ALA PHE LEU GLY SER ARG GLU ALA ILE LYS TYR SEQRES 11 B 261 PHE VAL GLU ASN ASP ILE LYS GLY ASN VAL ILE ASN MET SEQRES 12 B 261 SER SER VAL ARG GLU VAL ILE PRO TRP PRO TRP ASN VAL SEQRES 13 B 261 HIS TYR ALA SER SER LYS GLY GLY MET LYS LEU MET THR SEQRES 14 B 261 LYS THR LEU ALA LEU GLU TYR ALA SER ASN GLY ILE ARG SEQRES 15 B 261 VAL ASN ASN ILE GLY PRO GLY ALA ILE ASN THR THR GLY SEQRES 16 B 261 ASN ALA GLU ARG TRP ALA ASP PRO LYS LEU LYS ALA ASP SEQRES 17 B 261 VAL GLU SER MET ILE PRO MET GLY TYR ILE GLY GLU PRO SEQRES 18 B 261 GLU GLU ILE ALA ALA VAL ALA ALA TRP LEU ALA SER LYS SEQRES 19 B 261 GLU ALA SER TYR VAL THR GLY ILE THR LEU PHE ALA ASP SEQRES 20 B 261 GLY GLY MET THR LEU GLY PRO ALA PHE GLU PRO GLY ARG SEQRES 21 B 261 GLU HET NAD A 301 44 HET DMS A 302 4 HET PEG A 303 7 HET NAD B 301 44 HET PO4 B 302 5 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM DMS DIMETHYL SULFOXIDE HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM PO4 PHOSPHATE ION FORMUL 3 NAD 2(C21 H27 N7 O14 P2) FORMUL 4 DMS C2 H6 O S FORMUL 5 PEG C4 H10 O3 FORMUL 7 PO4 O4 P 3- FORMUL 8 HOH *462(H2 O) HELIX 1 AA1 TYR A 2 LYS A 6 5 5 HELIX 2 AA2 THR A 17 GLU A 30 1 14 HELIX 3 AA3 ASP A 44 GLY A 56 1 13 HELIX 4 AA4 LYS A 68 GLY A 84 1 17 HELIX 5 AA5 PRO A 100 LEU A 104 5 5 HELIX 6 AA6 PRO A 105 LEU A 117 1 13 HELIX 7 AA7 LEU A 117 ASN A 134 1 18 HELIX 8 AA8 SER A 145 VAL A 149 5 5 HELIX 9 AA9 ASN A 155 ALA A 177 1 23 HELIX 10 AB1 SER A 178 GLY A 180 5 3 HELIX 11 AB2 THR A 193 TRP A 200 1 8 HELIX 12 AB3 ASP A 202 MET A 212 1 11 HELIX 13 AB4 GLU A 220 SER A 233 1 14 HELIX 14 AB5 LYS A 234 SER A 237 5 4 HELIX 15 AB6 GLY A 249 GLY A 253 5 5 HELIX 16 AB7 TYR B 2 LYS B 6 5 5 HELIX 17 AB8 THR B 17 GLU B 30 1 14 HELIX 18 AB9 SER B 40 GLN B 43 5 4 HELIX 19 AC1 ASP B 44 GLY B 56 1 13 HELIX 20 AC2 LYS B 68 GLY B 84 1 17 HELIX 21 AC3 PRO B 100 LEU B 104 5 5 HELIX 22 AC4 PRO B 105 LEU B 117 1 13 HELIX 23 AC5 LEU B 117 ASN B 134 1 18 HELIX 24 AC6 SER B 145 VAL B 149 5 5 HELIX 25 AC7 ASN B 155 ALA B 177 1 23 HELIX 26 AC8 SER B 178 GLY B 180 5 3 HELIX 27 AC9 THR B 193 TRP B 200 1 8 HELIX 28 AD1 ASP B 202 MET B 212 1 11 HELIX 29 AD2 GLU B 220 SER B 233 1 14 HELIX 30 AD3 LYS B 234 SER B 237 5 4 HELIX 31 AD4 GLY B 249 GLY B 253 5 5 SHEET 1 AA1 7 GLU A 58 GLN A 63 0 SHEET 2 AA1 7 LYS A 33 TYR A 38 1 N ILE A 36 O VAL A 60 SHEET 3 AA1 7 VAL A 9 ILE A 12 1 N VAL A 10 O VAL A 35 SHEET 4 AA1 7 ILE A 88 ASN A 91 1 O ILE A 90 N ALA A 11 SHEET 5 AA1 7 ASN A 139 MET A 143 1 O ILE A 141 N MET A 89 SHEET 6 AA1 7 ARG A 182 PRO A 188 1 O ARG A 182 N VAL A 140 SHEET 7 AA1 7 THR A 243 ALA A 246 1 O LEU A 244 N GLY A 187 SHEET 1 AA2 7 GLU B 58 GLN B 63 0 SHEET 2 AA2 7 LYS B 33 TYR B 38 1 N ILE B 36 O VAL B 60 SHEET 3 AA2 7 VAL B 9 ILE B 12 1 N VAL B 10 O VAL B 35 SHEET 4 AA2 7 ILE B 88 ASN B 91 1 O ILE B 90 N ALA B 11 SHEET 5 AA2 7 ASN B 139 MET B 143 1 O ILE B 141 N MET B 89 SHEET 6 AA2 7 ARG B 182 PRO B 188 1 O ARG B 182 N VAL B 140 SHEET 7 AA2 7 THR B 243 ALA B 246 1 O LEU B 244 N GLY B 187 CRYST1 64.844 127.698 63.598 90.00 109.38 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015422 0.000000 0.005425 0.00000 SCALE2 0.000000 0.007831 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016668 0.00000