HEADER IMMUNE SYSTEM/RNA 21-FEB-24 8W2S TITLE CAS9D EFFECTOR:SGRNA BINARY COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: HNH NUCLEASE DOMAIN-CONTAINING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: SGRNA; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DELTAPROTEOBACTERIA; SOURCE 3 ORGANISM_TAXID: 28221; SOURCE 4 GENE: A2022_01700; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: NICO DE3; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: DELTAPROTEOBACTERIA; SOURCE 10 ORGANISM_TAXID: 28221; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CRISPR-CAS9, ENDONUCLEASE, BINARY COMPLEX, EFFECTOR, SGRNA, IMMUNE KEYWDS 2 SYSTEM-RNA COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR R.FREGOSO OCAMPO,J.P.K.BRAVO,D.W.TAYLOR REVDAT 1 15-JAN-25 8W2S 0 JRNL AUTH R.F.OCAMPO,J.P.K.BRAVO,T.L.DANGERFIELD,I.NOCEDAL,S.A.JIRDE, JRNL AUTH 2 L.M.ALEXANDER,N.C.THOMAS,A.DAS,S.NIELSON,K.A.JOHNSON, JRNL AUTH 3 C.T.BROWN,C.N.BUTTERFIELD,D.S.A.GOLTSMAN,D.W.TAYLOR JRNL TITL DNA TARGETING BY COMPACT CAS9D AND ITS RESURRECTED ANCESTOR. JRNL REF NAT COMMUN V. 16 457 2025 JRNL REFN ESSN 2041-1723 JRNL PMID 39774105 JRNL DOI 10.1038/S41467-024-55573-4 REMARK 2 REMARK 2 RESOLUTION. 3.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.400 REMARK 3 NUMBER OF PARTICLES : 101411 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8W2S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-FEB-24. REMARK 100 THE DEPOSITION ID IS D_1000281737. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : CAS9D:SGRNA REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.90 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1500.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 8000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 ARG A 3 REMARK 465 GLU A 4 REMARK 465 LEU A 5 REMARK 465 VAL A 6 REMARK 465 LEU A 7 REMARK 465 GLY A 8 REMARK 465 ILE A 9 REMARK 465 ASP A 10 REMARK 465 TYR A 11 REMARK 465 GLY A 12 REMARK 465 GLY A 13 REMARK 465 LYS A 14 REMARK 465 TYR A 15 REMARK 465 THR A 16 REMARK 465 GLY A 17 REMARK 465 LEU A 18 REMARK 465 ALA A 19 REMARK 465 VAL A 20 REMARK 465 VAL A 21 REMARK 465 ASP A 22 REMARK 465 ARG A 23 REMARK 465 ARG A 24 REMARK 465 HIS A 25 REMARK 465 ASN A 26 REMARK 465 GLN A 27 REMARK 465 VAL A 28 REMARK 465 LEU A 29 REMARK 465 TYR A 30 REMARK 465 ALA A 31 REMARK 465 ASN A 32 REMARK 465 ARG A 33 REMARK 465 LEU A 34 REMARK 465 LYS A 35 REMARK 465 MET A 36 REMARK 465 ARG A 37 REMARK 465 ASP A 38 REMARK 465 ASP A 39 REMARK 465 VAL A 40 REMARK 465 ALA A 41 REMARK 465 GLY A 42 REMARK 465 CYS A 187 REMARK 465 GLY A 188 REMARK 465 VAL A 189 REMARK 465 ASN A 190 REMARK 465 THR A 191 REMARK 465 PRO A 192 REMARK 465 LEU A 193 REMARK 465 ARG A 194 REMARK 465 GLU A 269A REMARK 465 HIS A 269B REMARK 465 THR A 269C REMARK 465 GLU A 269D REMARK 465 HIS A 269E REMARK 465 SER A 269F REMARK 465 LYS A 269G REMARK 465 GLU A 269H REMARK 465 GLU A 269I REMARK 465 ARG A 269J REMARK 465 LYS A 269K REMARK 465 VAL A 269L REMARK 465 PHE A 269M REMARK 465 ARG A 269N REMARK 465 LEU A 269O REMARK 465 ALA A 269P REMARK 465 PRO A 269Q REMARK 465 SER A 269R REMARK 465 LEU A 269S REMARK 465 LYS A 269T REMARK 465 THR A 269U REMARK 465 LYS A 269V REMARK 465 ILE A 269W REMARK 465 GLU A 269X REMARK 465 ASN A 269Y REMARK 465 VAL A 269Z REMARK 465 LEU A 270A REMARK 465 ALA A 270B REMARK 465 VAL A 270C REMARK 465 ILE A 270D REMARK 465 LYS A 270E REMARK 465 ASP A 270F REMARK 465 GLU A 270G REMARK 465 ILE A 270H REMARK 465 LEU A 270I REMARK 465 PRO A 270J REMARK 465 LYS A 270K REMARK 465 PHE A 270L REMARK 465 THR A 270M REMARK 465 VAL A 270N REMARK 465 ASN A 270O REMARK 465 LYS A 270P REMARK 465 VAL A 270Q REMARK 465 VAL A 270R REMARK 465 MET A 270S REMARK 465 GLU A 270T REMARK 465 SER A 270U REMARK 465 ASN A 270V REMARK 465 ASN A 270W REMARK 465 PHE A 270X REMARK 465 ASP A 270Y REMARK 465 ILE A 270Z REMARK 465 ALA A 271A REMARK 465 ALA A 271B REMARK 465 LYS A 271C REMARK 465 THR A 271D REMARK 465 GLN A 271E REMARK 465 GLY A 271F REMARK 465 LYS A 271G REMARK 465 LYS A 271H REMARK 465 ARG A 271I REMARK 465 LEU A 271J REMARK 465 ALA A 271K REMARK 465 LYS A 271L REMARK 465 GLU A 271M REMARK 465 GLU A 271N REMARK 465 TYR A 271O REMARK 465 GLY A 271P REMARK 465 LYS A 271Q REMARK 465 GLY A 271R REMARK 465 PRO A 271S REMARK 465 ARG A 271T REMARK 465 GLU A 271U REMARK 465 GLY A 271V REMARK 465 LYS A 271W REMARK 465 GLU A 271X REMARK 465 THR A 271Y REMARK 465 ARG A 271Z REMARK 465 LYS A 272A REMARK 465 GLU A 272B REMARK 465 ALA A 272C REMARK 465 LEU A 272D REMARK 465 LEU A 272E REMARK 465 ARG A 272F REMARK 465 GLU A 272G REMARK 465 THR A 272H REMARK 465 ASP A 272I REMARK 465 GLY A 272J REMARK 465 ARG A 272K REMARK 465 CYS A 272L REMARK 465 ILE A 272M REMARK 465 TYR A 272N REMARK 465 CYS A 272O REMARK 465 GLY A 272P REMARK 465 LYS A 272Q REMARK 465 SER A 272R REMARK 465 ILE A 272S REMARK 465 ASP A 272T REMARK 465 ILE A 272U REMARK 465 SER A 272V REMARK 465 ASN A 272W REMARK 465 ALA A 272X REMARK 465 HIS A 272Y REMARK 465 ASP A 272Z REMARK 465 ASP A 273A REMARK 465 HIS A 273B REMARK 465 ILE A 273C REMARK 465 PHE A 273D REMARK 465 PRO A 273E REMARK 465 ARG A 273F REMARK 465 LYS A 273G REMARK 465 ALA A 273H REMARK 465 GLY A 273I REMARK 465 GLY A 273J REMARK 465 LEU A 273K REMARK 465 ASN A 273L REMARK 465 ILE A 273M REMARK 465 PHE A 273N REMARK 465 ALA A 273O REMARK 465 ASN A 273P REMARK 465 LEU A 273Q REMARK 465 VAL A 273R REMARK 465 ALA A 273S REMARK 465 CYS A 273T REMARK 465 CYS A 273U REMARK 465 ALA A 273V REMARK 465 VAL A 273W REMARK 465 CYS A 273X REMARK 465 ASN A 273Y REMARK 465 GLU A 273Z REMARK 465 ASN A 274A REMARK 465 LYS A 274B REMARK 465 LYS A 274C REMARK 465 GLY A 274D REMARK 465 ARG A 274E REMARK 465 THR A 274F REMARK 465 PRO A 274G REMARK 465 LEU A 274H REMARK 465 GLU A 274I REMARK 465 SER A 274J REMARK 465 GLY A 274K REMARK 465 ILE A 274L REMARK 465 SER A 274M REMARK 465 PRO A 274N REMARK 465 LYS A 274O REMARK 465 PRO A 274P REMARK 465 GLU A 274Q REMARK 465 ILE A 274R REMARK 465 ILE A 274S REMARK 465 ALA A 274T REMARK 465 PHE A 274U REMARK 465 MET A 274V REMARK 465 LYS A 274W REMARK 465 ASN A 274X REMARK 465 ASP A 274Y REMARK 465 LEU A 274Z REMARK 465 LYS A 275A REMARK 465 LYS A 275B REMARK 465 LYS A 275C REMARK 465 ILE A 275D REMARK 465 LEU A 275E REMARK 465 GLU A 275F REMARK 465 ASP A 275G REMARK 465 ALA A 275H REMARK 465 ARG A 275I REMARK 465 ASN A 275J REMARK 465 ILE A 275K REMARK 465 ASN A 275L REMARK 465 THR A 275M REMARK 465 VAL A 275N REMARK 465 ASP A 275O REMARK 465 PHE A 275P REMARK 465 ASN A 275Q REMARK 465 LYS A 275R REMARK 465 TYR A 275S REMARK 465 MET A 275T REMARK 465 SER A 275U REMARK 465 HIS A 275V REMARK 465 ALA A 275W REMARK 465 SER A 275X REMARK 465 ILE A 275Y REMARK 465 GLY A 275Z REMARK 465 TRP A 276A REMARK 465 ARG A 276B REMARK 465 TYR A 276C REMARK 465 MET A 276D REMARK 465 ARG A 276E REMARK 465 ASP A 276F REMARK 465 ARG A 276G REMARK 465 LEU A 276H REMARK 465 ARG A 276I REMARK 465 GLU A 276J REMARK 465 SER A 276K REMARK 465 ALA A 276L REMARK 465 GLY A 276M REMARK 465 ASN A 276N REMARK 465 LYS A 276O REMARK 465 LYS A 276P REMARK 465 LEU A 276Q REMARK 465 PRO A 276R REMARK 465 ILE A 276S REMARK 465 GLU A 276T REMARK 465 ARG A 276U REMARK 465 GLN A 276V REMARK 465 SER A 276W REMARK 465 GLY A 276X REMARK 465 ILE A 276Y REMARK 465 TYR A 276Z REMARK 465 THR A 277A REMARK 465 ALA A 277B REMARK 465 TYR A 277C REMARK 465 PHE A 277D REMARK 465 ARG A 277E REMARK 465 ARG A 277F REMARK 465 TRP A 277G REMARK 465 TRP A 277H REMARK 465 GLY A 277I REMARK 465 PHE A 277J REMARK 465 LYS A 277K REMARK 465 LYS A 277L REMARK 465 GLU A 277M REMARK 465 ARG A 277N REMARK 465 GLY A 277O REMARK 465 ASN A 277P REMARK 465 THR A 277Q REMARK 465 LEU A 277R REMARK 465 HIS A 277S REMARK 465 HIS A 277T REMARK 465 ALA A 277U REMARK 465 LEU A 277V REMARK 465 ASP A 277W REMARK 465 ALA A 277X REMARK 465 VAL A 277Y REMARK 465 ILE A 277Z REMARK 465 LEU A 278A REMARK 465 ALA A 278B REMARK 465 SER A 278C REMARK 465 ARG A 278D REMARK 465 LYS A 278E REMARK 465 GLY A 278F REMARK 465 TYR A 278G REMARK 465 SER A 278H REMARK 465 ASP A 278I REMARK 465 ASP A 278J REMARK 465 GLY A 278K REMARK 465 LEU A 278L REMARK 465 VAL A 278M REMARK 465 ASP A 278N REMARK 465 MET A 278O REMARK 465 THR A 278P REMARK 465 LEU A 278Q REMARK 465 LYS A 278R REMARK 465 PRO A 278S REMARK 465 LYS A 278T REMARK 465 TYR A 278U REMARK 465 ASN A 278V REMARK 465 LYS A 278W REMARK 465 GLY A 278X REMARK 465 GLY A 278Y REMARK 465 GLU A 278Z REMARK 465 PHE A 279A REMARK 465 ASP A 279B REMARK 465 PRO A 279C REMARK 465 GLU A 279D REMARK 465 LYS A 279E REMARK 465 HIS A 279F REMARK 465 LEU A 279G REMARK 465 PRO A 279H REMARK 465 GLU A 279I REMARK 465 PRO A 279J REMARK 465 ILE A 279K REMARK 465 GLU A 279L REMARK 465 PHE A 279M REMARK 465 LYS A 279N REMARK 465 MET A 279O REMARK 465 ASP A 279P REMARK 465 LYS A 279Q REMARK 465 GLY A 279R REMARK 465 SER A 279S REMARK 465 ARG A 279T REMARK 465 GLY A 279U REMARK 465 SER A 279V REMARK 465 ALA A 279W REMARK 465 LEU A 279X REMARK 465 HIS A 279Y REMARK 465 ASP A 279Z REMARK 465 ARG A 280A REMARK 465 ASN A 280B REMARK 465 PRO A 280C REMARK 465 LEU A 280D REMARK 465 SER A 280E REMARK 465 TYR A 280F REMARK 465 LYS A 280G REMARK 465 LYS A 280H REMARK 465 GLY A 280I REMARK 465 ILE A 280J REMARK 465 ILE A 280K REMARK 465 THR A 280L REMARK 465 ARG A 280M REMARK 465 ARG A 280N REMARK 465 PHE A 280O REMARK 465 MET A 280P REMARK 465 VAL A 280Q REMARK 465 THR A 280R REMARK 465 GLU A 280S REMARK 465 ILE A 280T REMARK 465 GLU A 280U REMARK 465 CYS A 280V REMARK 465 GLY A 280W REMARK 465 LYS A 280X REMARK 465 GLU A 280Y REMARK 465 ASP A 280Z REMARK 465 ASP A 281A REMARK 465 VAL A 281B REMARK 465 ILE A 281C REMARK 465 SER A 281D REMARK 465 GLU A 281E REMARK 465 THR A 281F REMARK 465 TYR A 281G REMARK 465 ARG A 281H REMARK 465 GLU A 281I REMARK 465 LYS A 281J REMARK 465 LEU A 281K REMARK 465 LYS A 281L REMARK 465 GLU A 281M REMARK 465 ALA A 281N REMARK 465 PHE A 281O REMARK 465 LYS A 281P REMARK 465 ARG A 281Q REMARK 465 PHE A 281R REMARK 465 ASP A 281S REMARK 465 THR A 281T REMARK 465 LYS A 281U REMARK 465 LYS A 281V REMARK 465 GLY A 281W REMARK 465 LYS A 281X REMARK 465 CYS A 281Y REMARK 465 LEU A 281Z REMARK 465 THR A 282A REMARK 465 ASP A 282B REMARK 465 LYS A 282C REMARK 465 GLU A 282D REMARK 465 ALA A 282E REMARK 465 LYS A 282F REMARK 465 GLU A 282G REMARK 465 ALA A 282H REMARK 465 GLY A 282I REMARK 465 PHE A 282J REMARK 465 CYS A 282K REMARK 465 ILE A 282L REMARK 465 LYS A 282M REMARK 465 LYS A 282N REMARK 465 ASN A 282O REMARK 465 GLU A 282P REMARK 465 LEU A 282Q REMARK 465 VAL A 282R REMARK 465 MET A 282S REMARK 465 SER A 282T REMARK 465 LEU A 282U REMARK 465 LYS A 282V REMARK 465 CYS A 282W REMARK 465 SER A 282X REMARK 465 ILE A 282Y REMARK 465 LYS A 282Z REMARK 465 GLY A 283A REMARK 465 THR A 283B REMARK 465 GLY A 283C REMARK 465 PRO A 283D REMARK 465 GLY A 283E REMARK 465 GLN A 283F REMARK 465 MET A 283G REMARK 465 ILE A 283H REMARK 465 ARG A 283I REMARK 465 ILE A 283J REMARK 465 ASN A 283K REMARK 465 ASN A 283L REMARK 465 ASN A 283M REMARK 465 VAL A 283N REMARK 465 PHE A 283O REMARK 465 LYS A 283P REMARK 465 THR A 283Q REMARK 465 ASN A 283R REMARK 465 VAL A 283S REMARK 465 HIS A 283T REMARK 465 ASN A 283U REMARK 465 VAL A 283V REMARK 465 GLY A 283W REMARK 465 VAL A 283X REMARK 465 ASP A 283Y REMARK 465 VAL A 283Z REMARK 465 TYR A 284A REMARK 465 LEU A 284B REMARK 465 ASP A 284C REMARK 465 GLU A 284D REMARK 465 LYS A 284E REMARK 465 GLY A 284F REMARK 465 LYS A 284G REMARK 465 LYS A 284H REMARK 465 LYS A 284I REMARK 465 ALA A 284J REMARK 465 TYR A 284K REMARK 465 GLU A 284L REMARK 465 ARG A 284M REMARK 465 LYS A 284N REMARK 465 ASN A 284O REMARK 465 PRO A 284P REMARK 465 ARG A 284Q REMARK 465 LEU A 284R REMARK 465 SER A 284S REMARK 465 LYS A 284T REMARK 465 HIS A 284U REMARK 465 PHE A 284V REMARK 465 ILE A 284W REMARK 465 GLU A 284X REMARK 465 PRO A 284Y REMARK 465 PRO A 284Z REMARK 465 PRO A 285A REMARK 465 GLN A 285B REMARK 465 PRO A 285C REMARK 465 ASN A 285D REMARK 465 GLY A 285E REMARK 465 ARG A 285F REMARK 465 VAL A 285G REMARK 465 SER A 285H REMARK 465 PHE A 285I REMARK 465 THR A 285J REMARK 465 LEU A 285K REMARK 465 LYS A 285L REMARK 465 ARG A 285M REMARK 465 ARG A 285N REMARK 465 ASP A 285O REMARK 465 MET A 285P REMARK 465 VAL A 285Q REMARK 465 THR A 285R REMARK 465 VAL A 285S REMARK 465 GLU A 285T REMARK 465 GLY A 285U REMARK 465 GLU A 285V REMARK 465 ASP A 285W REMARK 465 ALA A 285X REMARK 465 ILE A 285Y REMARK 465 TYR A 285Z REMARK 465 ARG A 286A REMARK 465 ILE A 286B REMARK 465 LYS A 286C REMARK 465 LYS A 286D REMARK 465 LEU A 286E REMARK 465 GLY A 286F REMARK 465 THR A 286G REMARK 465 SER A 286H REMARK 465 PRO A 286I REMARK 465 THR A 286J REMARK 465 ILE A 286K REMARK 465 GLU A 286L REMARK 465 ALA A 286M REMARK 465 VAL A 286N REMARK 465 VAL A 286O REMARK 465 GLY A 286P REMARK 465 SER A 286Q REMARK 465 ASP A 286R REMARK 465 GLY A 286S REMARK 465 LYS A 286T REMARK 465 THR A 286U REMARK 465 ARG A 286V REMARK 465 THR A 286W REMARK 465 VAL A 286X REMARK 465 SER A 286Y REMARK 465 ALA A 286Z REMARK 465 THR A 287A REMARK 465 LYS A 287B REMARK 465 LEU A 287C REMARK 465 THR A 287D REMARK 465 LYS A 287E REMARK 465 ALA A 287F REMARK 465 ASN A 287G REMARK 465 SER A 287H REMARK 465 ALA A 287I REMARK 465 GLU A 287J REMARK 465 ILE A 287K REMARK 465 GLU A 287L REMARK 465 GLN A 287M REMARK 465 SER A 287N REMARK 465 GLU A 287O REMARK 465 LYS A 287P REMARK 465 ASP A 287Q REMARK 465 ASN A 287R REMARK 465 LEU A 287S REMARK 465 LYS A 287T REMARK 465 ASP A 287U REMARK 465 ALA A 287V REMARK 465 VAL A 287W REMARK 465 LEU A 287X REMARK 465 ASP A 287Y REMARK 465 LYS A 287Z REMARK 465 ASN A 288A REMARK 465 ARG A 288B REMARK 465 ARG A 288C REMARK 465 GLU A 288D REMARK 465 GLU A 288E REMARK 465 VAL A 288F REMARK 465 LYS A 288G REMARK 465 SER A 288H REMARK 465 PHE A 288I REMARK 465 PHE A 288J REMARK 465 ARG A 288K REMARK 465 LYS A 288L REMARK 465 HIS A 288M REMARK 465 LYS A 288N REMARK 465 THR A 288O REMARK 465 ASP A 288P REMARK 465 GLU A 288Q REMARK 465 HIS A 288R REMARK 465 ILE A 288S REMARK 465 ARG A 288T REMARK 465 LYS A 288U REMARK 465 GLN A 288V REMARK 465 VAL A 288W REMARK 465 TYR A 288X REMARK 465 ASP A 288Y REMARK 465 ILE A 288Z REMARK 465 ALA A 289A REMARK 465 ASP A 289B REMARK 465 ASN A 289C REMARK 465 LYS A 289D REMARK 465 LEU A 289E REMARK 465 SER A 289F REMARK 465 GLY A 289G REMARK 465 ARG A 289H REMARK 465 THR A 289I REMARK 465 VAL A 289J REMARK 465 PHE A 289K REMARK 465 CYS A 289L REMARK 465 LYS A 289M REMARK 465 GLU A 289N REMARK 465 HIS A 289O REMARK 465 ILE A 289P REMARK 465 LEU A 289Q REMARK 465 UNK A 656 REMARK 465 UNK A 657 REMARK 465 UNK A 658 REMARK 465 UNK A 659 REMARK 465 UNK A 660 REMARK 465 UNK A 661 REMARK 465 UNK A 662 REMARK 465 UNK A 663 REMARK 465 UNK A 664 REMARK 465 UNK A 665 REMARK 465 UNK A 666 REMARK 465 UNK A 667 REMARK 465 UNK A 668 REMARK 465 UNK A 669 REMARK 465 UNK A 670 REMARK 465 UNK A 671 REMARK 465 G B 1 REMARK 465 A B 2 REMARK 465 C B 3 REMARK 465 G B 4 REMARK 465 C B 5 REMARK 465 A B 6 REMARK 465 U B 7 REMARK 465 A B 8 REMARK 465 A B 9 REMARK 465 U B 147 REMARK 465 U B 148 REMARK 465 U B 149 REMARK 465 A B 150 REMARK 465 A B 151 REMARK 465 U B 152 REMARK 465 U B 153 REMARK 465 U B 154 REMARK 465 U B 155 REMARK 465 U B 156 REMARK 465 U B 157 REMARK 465 U B 158 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 100 CG SD CE REMARK 470 GLU A 103 CG CD OE1 OE2 REMARK 470 GLU A 129 CG CD OE1 OE2 REMARK 470 ARG A 132 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 138 CG CD CE NZ REMARK 470 GLU A 139 CG CD OE1 OE2 REMARK 470 LYS A 159 CG CD CE NZ REMARK 470 PHE A 235 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 240 CG CD CE NZ REMARK 470 ARG A 246 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 251 CG OD1 OD2 REMARK 470 LYS A 256 CG CD CE NZ REMARK 470 LYS A 593 CG CD CE NZ REMARK 470 PHE A 596 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 597 CG CD CE NZ REMARK 470 ASP A 600 CG OD1 OD2 REMARK 470 LYS A 603 CG CD CE NZ REMARK 470 THR A 608 OG1 CG2 REMARK 470 ASP A 609 CG OD1 OD2 REMARK 470 LYS A 610 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 224 CA - CB - CG ANGL. DEV. = 14.4 DEGREES REMARK 500 U B 92 C3' - O3' - P ANGL. DEV. = 7.5 DEGREES REMARK 500 G B 142 N9 - C1' - C2' ANGL. DEV. = 10.8 DEGREES REMARK 500 G B 142 O4' - C1' - N9 ANGL. DEV. = 8.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 169 -60.03 -92.73 REMARK 500 LYS A 563 40.66 38.68 REMARK 500 ASN A 644 -131.28 52.78 REMARK 500 HIS A 653 -129.17 58.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-43757 RELATED DB: EMDB REMARK 900 AN INTRICATELY FOLDED GUIDE RNA SCAFFOLD ENABLES DNA TARGETING BY REMARK 900 THE COMPACT CAS9D NUCLEASE DBREF 8W2S A 1 683 PDB 8W2S 8W2S 1 683 DBREF 8W2S B 1 158 PDB 8W2S 8W2S 1 158 SEQRES 1 A 942 MET GLU ARG GLU LEU VAL LEU GLY ILE ASP TYR GLY GLY SEQRES 2 A 942 LYS TYR THR GLY LEU ALA VAL VAL ASP ARG ARG HIS ASN SEQRES 3 A 942 GLN VAL LEU TYR ALA ASN ARG LEU LYS MET ARG ASP ASP SEQRES 4 A 942 VAL ALA GLY ILE LEU LYS ASP ARG ARG LYS GLN ARG GLY SEQRES 5 A 942 ILE ARG ARG THR ALA GLN THR LYS LYS LYS ARG LEU ARG SEQRES 6 A 942 GLU LEU LYS ASN TYR LEU LYS SER ILE GLY TYR ASN GLU SEQRES 7 A 942 SER THR ALA THR PHE GLU THR VAL TYR SER LEU ALA HIS SEQRES 8 A 942 LYS ARG GLY TYR ASP TYR ALA ASP MET PRO GLU GLU LYS SEQRES 9 A 942 THR SER GLU GLU ILE GLU ALA MET ASP VAL GLU GLU ARG SEQRES 10 A 942 LYS GLN TRP GLU LYS GLU LYS GLN GLU TRP GLU GLU THR SEQRES 11 A 942 LYS ARG ASN SER ARG HIS ARG LYS GLU VAL VAL LYS ASP SEQRES 12 A 942 VAL HIS LYS ALA MET ILE GLU GLY ARG ALA THR GLU GLU SEQRES 13 A 942 GLN ILE LYS ARG VAL GLU ARG ILE PHE ASN LYS GLN TYR SEQRES 14 A 942 ARG PRO LYS ARG PHE ASN ASN ARG ILE LEU THR LYS CYS SEQRES 15 A 942 LYS VAL GLU ASP CYS GLY VAL ASN THR PRO LEU ARG LYS SEQRES 16 A 942 ASN VAL ARG ASP LEU LEU ILE GLU ASN ILE VAL ARG PHE SEQRES 17 A 942 PHE PRO ILE GLU GLN SER GLU LYS ASP ASN LEU LYS ASP SEQRES 18 A 942 ALA VAL LEU ASP LYS ASN ARG ARG GLU GLU VAL LYS SER SEQRES 19 A 942 PHE PHE ARG LYS HIS LYS THR ASP GLU HIS ILE ARG LYS SEQRES 20 A 942 GLN VAL TYR ASP ILE ALA ASP ASN LYS LEU SER GLY ARG SEQRES 21 A 942 THR VAL PHE CYS LYS GLU HIS ILE LEU GLU HIS THR GLU SEQRES 22 A 942 HIS SER LYS GLU GLU ARG LYS VAL PHE ARG LEU ALA PRO SEQRES 23 A 942 SER LEU LYS THR LYS ILE GLU ASN VAL LEU ALA VAL ILE SEQRES 24 A 942 LYS ASP GLU ILE LEU PRO LYS PHE THR VAL ASN LYS VAL SEQRES 25 A 942 VAL MET GLU SER ASN ASN PHE ASP ILE ALA ALA LYS THR SEQRES 26 A 942 GLN GLY LYS LYS ARG LEU ALA LYS GLU GLU TYR GLY LYS SEQRES 27 A 942 GLY PRO ARG GLU GLY LYS GLU THR ARG LYS GLU ALA LEU SEQRES 28 A 942 LEU ARG GLU THR ASP GLY ARG CYS ILE TYR CYS GLY LYS SEQRES 29 A 942 SER ILE ASP ILE SER ASN ALA HIS ASP ASP HIS ILE PHE SEQRES 30 A 942 PRO ARG LYS ALA GLY GLY LEU ASN ILE PHE ALA ASN LEU SEQRES 31 A 942 VAL ALA CYS CYS ALA VAL CYS ASN GLU ASN LYS LYS GLY SEQRES 32 A 942 ARG THR PRO LEU GLU SER GLY ILE SER PRO LYS PRO GLU SEQRES 33 A 942 ILE ILE ALA PHE MET LYS ASN ASP LEU LYS LYS LYS ILE SEQRES 34 A 942 LEU GLU ASP ALA ARG ASN ILE ASN THR VAL ASP PHE ASN SEQRES 35 A 942 LYS TYR MET SER HIS ALA SER ILE GLY TRP ARG TYR MET SEQRES 36 A 942 ARG ASP ARG LEU ARG GLU SER ALA GLY ASN LYS LYS LEU SEQRES 37 A 942 PRO ILE GLU ARG GLN SER GLY ILE TYR THR ALA TYR PHE SEQRES 38 A 942 ARG ARG TRP TRP GLY PHE LYS LYS GLU ARG GLY ASN THR SEQRES 39 A 942 LEU HIS HIS ALA LEU ASP ALA VAL ILE LEU ALA SER ARG SEQRES 40 A 942 LYS GLY TYR SER ASP ASP GLY LEU VAL ASP MET THR LEU SEQRES 41 A 942 LYS PRO LYS TYR ASN LYS GLY GLY GLU PHE ASP PRO GLU SEQRES 42 A 942 LYS HIS LEU PRO GLU PRO ILE GLU PHE LYS MET ASP LYS SEQRES 43 A 942 GLY SER ARG GLY SER ALA LEU HIS ASP ARG ASN PRO LEU SEQRES 44 A 942 SER TYR LYS LYS GLY ILE ILE THR ARG ARG PHE MET VAL SEQRES 45 A 942 THR GLU ILE GLU CYS GLY LYS GLU ASP ASP VAL ILE SER SEQRES 46 A 942 GLU THR TYR ARG GLU LYS LEU LYS GLU ALA PHE LYS ARG SEQRES 47 A 942 PHE ASP THR LYS LYS GLY LYS CYS LEU THR ASP LYS GLU SEQRES 48 A 942 ALA LYS GLU ALA GLY PHE CYS ILE LYS LYS ASN GLU LEU SEQRES 49 A 942 VAL MET SER LEU LYS CYS SER ILE LYS GLY THR GLY PRO SEQRES 50 A 942 GLY GLN MET ILE ARG ILE ASN ASN ASN VAL PHE LYS THR SEQRES 51 A 942 ASN VAL HIS ASN VAL GLY VAL ASP VAL TYR LEU ASP GLU SEQRES 52 A 942 LYS GLY LYS LYS LYS ALA TYR GLU ARG LYS ASN PRO ARG SEQRES 53 A 942 LEU SER LYS HIS PHE ILE GLU PRO PRO PRO GLN PRO ASN SEQRES 54 A 942 GLY ARG VAL SER PHE THR LEU LYS ARG ARG ASP MET VAL SEQRES 55 A 942 THR VAL GLU GLY GLU ASP ALA ILE TYR ARG ILE LYS LYS SEQRES 56 A 942 LEU GLY THR SER PRO THR ILE GLU ALA VAL VAL GLY SER SEQRES 57 A 942 ASP GLY LYS THR ARG THR VAL SER ALA THR LYS LEU THR SEQRES 58 A 942 LYS ALA ASN SER ALA GLU ILE GLU GLN SER GLU LYS ASP SEQRES 59 A 942 ASN LEU LYS ASP ALA VAL LEU ASP LYS ASN ARG ARG GLU SEQRES 60 A 942 GLU VAL LYS SER PHE PHE ARG LYS HIS LYS THR ASP GLU SEQRES 61 A 942 HIS ILE ARG LYS GLN VAL TYR ASP ILE ALA ASP ASN LYS SEQRES 62 A 942 LEU SER GLY ARG THR VAL PHE CYS LYS GLU HIS ILE LEU SEQRES 63 A 942 SER ARG GLY SER ALA LEU HIS ASP ARG ASN PRO LEU SER SEQRES 64 A 942 TYR LYS LYS GLY ILE ILE THR ARG ARG PHE MET VAL THR SEQRES 65 A 942 GLU ILE GLU CYS GLY LYS GLU ASP ASP VAL ILE SER GLU SEQRES 66 A 942 THR TYR ARG GLU LYS LEU LYS GLU ALA PHE LYS ARG PHE SEQRES 67 A 942 ASP THR LYS LYS GLY LYS CYS LEU THR ASP LYS GLU ALA SEQRES 68 A 942 LYS GLU ALA GLY PHE CYS ILE LYS LYS ASN GLU LEU VAL SEQRES 69 A 942 MET SER LEU LYS CYS SER ILE LYS GLY THR GLY PRO GLY SEQRES 70 A 942 GLN MET ILE ARG ILE ASN ASN ASN VAL PHE LYS THR ASN SEQRES 71 A 942 VAL HIS ASN VAL UNK UNK UNK UNK UNK UNK UNK UNK UNK SEQRES 72 A 942 UNK UNK UNK UNK UNK UNK UNK ARG LYS ASN PRO ARG LEU SEQRES 73 A 942 SER LYS HIS PHE ILE GLU SEQRES 1 B 158 G A C G C A U A A A G A U SEQRES 2 B 158 G A G A C G C G U U A C A SEQRES 3 B 158 G U U A A G G C U C U G A SEQRES 4 B 158 A A A G A G C C U U A A U SEQRES 5 B 158 U G U A A A A C G C C U A SEQRES 6 B 158 U A C A G U G A A G G G A SEQRES 7 B 158 U A U A C G C U U G G G U SEQRES 8 B 158 U U G U C C A G C C U G A SEQRES 9 B 158 G C C U C U A U G C C A G SEQRES 10 B 158 A A A U G G C G C C U U C SEQRES 11 B 158 A U C G U G G G U U A G G SEQRES 12 B 158 A C A U U U A A U U U U U SEQRES 13 B 158 U U HELIX 1 AA1 LEU A 44 GLY A 75 1 32 HELIX 2 AA2 THR A 80 HIS A 91 1 12 HELIX 3 AA3 TYR A 95 ASP A 99 5 5 HELIX 4 AA4 THR A 105 GLU A 110 1 6 HELIX 5 AA5 ASP A 113 ARG A 132 1 20 HELIX 6 AA6 HIS A 136 GLY A 151 1 16 HELIX 7 AA7 THR A 154 LYS A 167 1 14 HELIX 8 AA8 VAL A 197 ARG A 207 1 11 HELIX 9 AA9 GLU A 212 ASP A 225 1 14 HELIX 10 AB1 ARG A 228 HIS A 239 1 12 HELIX 11 AB2 ASP A 242 ASP A 254 1 13 HELIX 12 AB3 CYS A 264 ILE A 268 5 5 HELIX 13 AB4 GLU A 576 VAL A 583 5 8 HELIX 14 AB5 SER A 585 PHE A 599 1 15 HELIX 15 AB6 THR A 608 GLU A 614 1 7 SHEET 1 AA1 3 SER A 560 LYS A 562 0 SHEET 2 AA1 3 ILE A 565 MET A 571 -1 O THR A 567 N SER A 560 SHEET 3 AA1 3 SER A 627 SER A 631 -1 O LEU A 628 N PHE A 570 SHEET 1 AA2 2 MET A 640 ILE A 643 0 SHEET 2 AA2 2 ASN A 646 LYS A 649 -1 O PHE A 648 N ILE A 641 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000