HEADER VIRAL PROTEIN 22-FEB-24 8W3J TITLE CRYSTAL STRUCTURE OF PREFUSION-STABILIZED RSV F PROTEIN UFCR2-ISS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PREFUSION-STABILIZED RSV F PROTEIN UFCR2-ISS; COMPND 3 CHAIN: F; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN RESPIRATORY SYNCYTIAL VIRUS A2; SOURCE 3 ORGANISM_TAXID: 11259; SOURCE 4 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 10029 KEYWDS RESPIRATORY SYNCYTIAL VIRUS, GLYCOPROTEIN, PREFUSION VACCINE, KEYWDS 2 STABILIZED, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.Z.LEE,R.L.STANFIELD,I.A.WILSON,J.ZHU REVDAT 1 15-JAN-25 8W3J 0 JRNL AUTH Y.Z.LEE,J.HAN,Y.N.ZHANG,G.WARD,K.BRAZ GOMES,S.AUCLAIR, JRNL AUTH 2 R.L.STANFIELD,L.HE,I.A.WILSON,J.ZHU JRNL TITL RATIONAL DESIGN OF UNCLEAVED PREFUSION-CLOSED TRIMER JRNL TITL 2 VACCINES FOR HUMAN RESPIRATORY SYNCYTIAL VIRUS AND JRNL TITL 3 METAPNEUMOVIRUS. JRNL REF NAT COMMUN V. 15 9939 2024 JRNL REFN ESSN 2041-1723 JRNL PMID 39550381 JRNL DOI 10.1038/S41467-024-54287-X REMARK 2 REMARK 2 RESOLUTION. 2.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 20350 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1025 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.8400 - 5.4100 1.00 2949 173 0.1969 0.2096 REMARK 3 2 5.4100 - 4.2900 1.00 2781 160 0.1904 0.2428 REMARK 3 3 4.2900 - 3.7500 1.00 2748 137 0.2275 0.2812 REMARK 3 4 3.7500 - 3.4100 1.00 2729 135 0.2379 0.2831 REMARK 3 5 3.4100 - 3.1600 1.00 2726 133 0.2644 0.3018 REMARK 3 6 3.1600 - 2.9800 1.00 2703 138 0.2642 0.2768 REMARK 3 7 2.9800 - 2.8300 1.00 2689 149 0.2886 0.3198 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.275 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.772 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 50.36 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 3492 REMARK 3 ANGLE : 1.461 4733 REMARK 3 CHIRALITY : 0.082 575 REMARK 3 PLANARITY : 0.014 597 REMARK 3 DIHEDRAL : 14.210 1297 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8W3J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-FEB-24. REMARK 100 THE DEPOSITION ID IS D_1000280346. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-NOV-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20350 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.830 REMARK 200 RESOLUTION RANGE LOW (A) : 37.840 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 30.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.93 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.19.2_4158 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M POTASSIUM SODIUM TARTRATE, 20% REMARK 280 PEG 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 84.61000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 84.61000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 84.61000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 84.61000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 84.61000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 84.61000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 84.61000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 84.61000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 84.61000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 84.61000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 84.61000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 84.61000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 84.61000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 84.61000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 84.61000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 84.61000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 84.61000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 84.61000 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 126.91500 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 42.30500 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 42.30500 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 126.91500 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 126.91500 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 126.91500 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 42.30500 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 42.30500 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 126.91500 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 42.30500 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 126.91500 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 42.30500 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 126.91500 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 42.30500 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 42.30500 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 42.30500 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 126.91500 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 42.30500 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 126.91500 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 126.91500 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 126.91500 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 42.30500 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 42.30500 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 126.91500 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 126.91500 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 42.30500 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 42.30500 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 42.30500 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 42.30500 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 126.91500 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 42.30500 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 126.91500 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 42.30500 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 126.91500 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 126.91500 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 126.91500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 54470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 169.22000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 169.22000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 -338.44000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 -169.22000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 338.44000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 -169.22000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH F 712 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET F -3 REMARK 465 GLY F -2 REMARK 465 ILE F -1 REMARK 465 LEU F 0 REMARK 465 PRO F 1 REMARK 465 SER F 2 REMARK 465 PRO F 3 REMARK 465 GLY F 4 REMARK 465 MET F 5 REMARK 465 PRO F 6 REMARK 465 ALA F 7 REMARK 465 LEU F 8 REMARK 465 LEU F 9 REMARK 465 SER F 10 REMARK 465 LEU F 11 REMARK 465 VAL F 12 REMARK 465 SER F 13 REMARK 465 LEU F 14 REMARK 465 LEU F 15 REMARK 465 SER F 16 REMARK 465 VAL F 17 REMARK 465 LEU F 18 REMARK 465 LEU F 19 REMARK 465 MET F 20 REMARK 465 GLY F 21 REMARK 465 CYS F 22 REMARK 465 VAL F 23 REMARK 465 ALA F 24 REMARK 465 GLU F 25 REMARK 465 ASP F 510 REMARK 465 GLU F 511 REMARK 465 LEU F 512 REMARK 465 LEU F 513 REMARK 465 ALA F 514 REMARK 465 SER F 515 REMARK 465 GLY F 516 REMARK 465 TYR F 517 REMARK 465 ILE F 518 REMARK 465 PRO F 519 REMARK 465 GLU F 520 REMARK 465 ALA F 521 REMARK 465 PRO F 522 REMARK 465 ARG F 523 REMARK 465 ASP F 524 REMARK 465 GLY F 525 REMARK 465 GLN F 526 REMARK 465 ALA F 527 REMARK 465 TYR F 528 REMARK 465 VAL F 529 REMARK 465 ARG F 530 REMARK 465 LYS F 531 REMARK 465 ASP F 532 REMARK 465 GLY F 533 REMARK 465 GLU F 534 REMARK 465 TRP F 535 REMARK 465 VAL F 536 REMARK 465 LEU F 537 REMARK 465 LEU F 538 REMARK 465 SER F 539 REMARK 465 THR F 540 REMARK 465 PHE F 541 REMARK 465 LEU F 542 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS F 166 O SER F 180 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN F 70 106.70 -59.01 REMARK 500 THR F 72 -32.48 -144.56 REMARK 500 LEU F 171 33.71 -93.10 REMARK 500 ALA F 177 142.23 -170.11 REMARK 500 ASN F 183 13.04 85.14 REMARK 500 CYS F 290 -102.02 -95.13 REMARK 500 SER F 362 -140.83 53.41 REMARK 500 ASN F 363 5.25 -65.78 REMARK 500 ASN F 371 64.23 -116.38 REMARK 500 ASP F 489 58.89 -152.76 REMARK 500 REMARK 500 REMARK: NULL DBREF 8W3J F -3 542 PDB 8W3J 8W3J -3 542 SEQRES 1 F 507 MET GLY ILE LEU PRO SER PRO GLY MET PRO ALA LEU LEU SEQRES 2 F 507 SER LEU VAL SER LEU LEU SER VAL LEU LEU MET GLY CYS SEQRES 3 F 507 VAL ALA GLU GLN ASN ILE THR GLU GLU PHE TYR GLN SER SEQRES 4 F 507 THR CYS SER ALA VAL SER LYS GLY TYR LEU GLY ALA LEU SEQRES 5 F 507 ARG THR GLY TRP TYR THR SER VAL ILE THR ILE GLU LEU SEQRES 6 F 507 SER ASN ILE LYS GLU ASN LYS CYS ASN GLY THR ASP ALA SEQRES 7 F 507 LYS VAL LYS LEU ILE LYS GLN GLU LEU ASP LYS TYR LYS SEQRES 8 F 507 ASN ALA VAL THR ASP LEU GLN LEU LEU MET GLN SER THR SEQRES 9 F 507 PRO ALA THR GLY SER GLY SER ALA ILE CYS SER GLY VAL SEQRES 10 F 507 ALA VAL CYS LYS VAL LEU HIS LEU GLU GLY GLU VAL ASN SEQRES 11 F 507 LYS ILE LYS SER ALA LEU LEU SER THR ASN LYS ALA VAL SEQRES 12 F 507 VAL SER LEU SER ASN GLY VAL SER VAL LEU THR SER LYS SEQRES 13 F 507 VAL LEU ASP LEU LYS ASN TYR ILE ASP LYS GLN LEU LEU SEQRES 14 F 507 PRO ILE VAL ASN LYS GLN SER CYS SER ILE PRO ASN ILE SEQRES 15 F 507 GLU THR VAL ILE GLU PHE GLN GLN LYS ASN ASN ARG LEU SEQRES 16 F 507 LEU GLU ILE THR ARG GLU PHE SER VAL ASN ALA GLY VAL SEQRES 17 F 507 THR THR PRO VAL SER THR TYR MET LEU THR ASN SER GLU SEQRES 18 F 507 LEU LEU SER LEU ILE ASN ASP MET PRO ILE THR ASN ASP SEQRES 19 F 507 GLN LYS LYS LEU MET SER ASN ASN VAL GLN ILE VAL ARG SEQRES 20 F 507 GLN GLN SER TYR SER ILE MET CYS ILE ILE LYS GLU GLU SEQRES 21 F 507 VAL LEU ALA TYR VAL VAL GLN LEU PRO LEU TYR GLY VAL SEQRES 22 F 507 ILE ASP THR PRO CYS TRP LYS LEU HIS THR SER PRO LEU SEQRES 23 F 507 CYS THR THR ASN THR LYS GLU GLY SER ASN ILE CYS LEU SEQRES 24 F 507 THR ARG THR ASP ARG GLY TRP TYR CYS ASP ASN ALA GLY SEQRES 25 F 507 SER VAL SER PHE PHE PRO GLN ALA GLU THR CYS LYS VAL SEQRES 26 F 507 GLN SER ASN ARG VAL PHE CYS ASP THR MET ASN SER LEU SEQRES 27 F 507 THR LEU PRO SER GLU VAL ASN LEU CYS ASN VAL ASP ILE SEQRES 28 F 507 PHE ASN PRO LYS TYR ASP CYS LYS ILE MET THR SER LYS SEQRES 29 F 507 THR ASP VAL SER SER SER VAL ILE THR SER LEU GLY ALA SEQRES 30 F 507 ILE VAL SER CYS TYR GLY LYS THR LYS CYS THR ALA SER SEQRES 31 F 507 ASN LYS ASN ARG GLY ILE ILE LYS THR PHE SER ASN GLY SEQRES 32 F 507 CYS ASP TYR VAL SER ASN LYS GLY VAL ASP THR VAL SER SEQRES 33 F 507 VAL GLY ASN THR LEU TYR CYS VAL ASN LYS GLN GLU GLY SEQRES 34 F 507 GLN SER LEU TYR VAL LYS GLY GLU PRO ILE ILE ASN PHE SEQRES 35 F 507 TYR ASP PRO LEU VAL PHE PRO SER ASP GLU PHE ASP ALA SEQRES 36 F 507 SER ILE SER GLN VAL ASN GLU LYS ILE ASN GLN SER LEU SEQRES 37 F 507 ALA PHE ILE ARG LYS SER ASP GLU LEU LEU ALA SER GLY SEQRES 38 F 507 TYR ILE PRO GLU ALA PRO ARG ASP GLY GLN ALA TYR VAL SEQRES 39 F 507 ARG LYS ASP GLY GLU TRP VAL LEU LEU SER THR PHE LEU HET EDO F 601 10 HET NAG F 602 14 HETNAM EDO 1,2-ETHANEDIOL HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN EDO ETHYLENE GLYCOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 EDO C2 H6 O2 FORMUL 3 NAG C8 H15 N O6 FORMUL 4 HOH *12(H2 O) HELIX 1 AA1 ASP F 73 SER F 99 1 27 HELIX 2 AA2 SER F 144 ALA F 147 5 4 HELIX 3 AA3 ILE F 148 HIS F 159 1 12 HELIX 4 AA4 GLY F 162 LEU F 171 1 10 HELIX 5 AA5 SER F 182 GLY F 184 5 3 HELIX 6 AA6 LEU F 195 LEU F 203 1 9 HELIX 7 AA7 LEU F 203 ASN F 208 1 6 HELIX 8 AA8 ASN F 216 ASN F 240 1 25 HELIX 9 AA9 THR F 253 ASP F 263 1 11 HELIX 10 AB1 THR F 267 ASN F 276 1 10 HELIX 11 AB2 ASN F 277 GLN F 284 1 8 HELIX 12 AB3 GLN F 354 GLU F 356 5 3 HELIX 13 AB4 MET F 370 SER F 372 5 3 HELIX 14 AB5 GLU F 378 VAL F 384 5 7 HELIX 15 AB6 PRO F 473 TYR F 478 5 6 HELIX 16 AB7 ASP F 479 PHE F 483 5 5 HELIX 17 AB8 ILE F 492 LYS F 508 1 17 SHEET 1 AA1 7 CYS F 358 GLN F 361 0 SHEET 2 AA1 7 ARG F 364 ASP F 368 -1 O PHE F 366 N LYS F 359 SHEET 3 AA1 7 SER F 38 ARG F 49 1 N ALA F 47 O VAL F 365 SHEET 4 AA1 7 VAL F 308 THR F 318 -1 O THR F 311 N GLY F 46 SHEET 5 AA1 7 GLY F 340 ASN F 345 -1 O TYR F 342 N TRP F 314 SHEET 6 AA1 7 SER F 348 PHE F 352 -1 O SER F 350 N CYS F 343 SHEET 7 AA1 7 LEU F 373 PRO F 376 -1 O LEU F 375 N VAL F 349 SHEET 1 AA2 5 CYS F 358 GLN F 361 0 SHEET 2 AA2 5 ARG F 364 ASP F 368 -1 O PHE F 366 N LYS F 359 SHEET 3 AA2 5 SER F 38 ARG F 49 1 N ALA F 47 O VAL F 365 SHEET 4 AA2 5 THR F 29 TYR F 33 -1 N TYR F 33 O SER F 38 SHEET 5 AA2 5 GLN F 465 VAL F 469 1 O VAL F 469 N PHE F 32 SHEET 1 AA3 6 LYS F 176 SER F 180 0 SHEET 2 AA3 6 SER F 186 ASP F 194 -1 O VAL F 187 N VAL F 179 SHEET 3 AA3 6 GLY F 51 GLU F 60 1 N THR F 58 O SER F 190 SHEET 4 AA3 6 VAL F 296 LEU F 305 -1 O LEU F 303 N TYR F 53 SHEET 5 AA3 6 TYR F 286 ILE F 292 -1 N ILE F 288 O VAL F 300 SHEET 6 AA3 6 VAL F 243 THR F 244 -1 N THR F 244 O SER F 287 SHEET 1 AA4 4 LEU F 321 CYS F 322 0 SHEET 2 AA4 4 CYS F 333 ARG F 336 -1 O LEU F 334 N LEU F 321 SHEET 3 AA4 4 LYS F 394 SER F 398 -1 O MET F 396 N THR F 335 SHEET 4 AA4 4 ALA F 490 SER F 491 -1 O ALA F 490 N ILE F 395 SHEET 1 AA5 3 SER F 404 ILE F 407 0 SHEET 2 AA5 3 GLY F 411 CYS F 416 -1 O SER F 415 N SER F 404 SHEET 3 AA5 3 GLY F 438 SER F 443 -1 O ASP F 440 N VAL F 414 SHEET 1 AA6 4 GLY F 430 THR F 434 0 SHEET 2 AA6 4 CYS F 422 ASN F 426 -1 N ALA F 424 O ILE F 432 SHEET 3 AA6 4 THR F 449 VAL F 452 -1 O SER F 451 N THR F 423 SHEET 4 AA6 4 THR F 455 CYS F 458 -1 O TYR F 457 N VAL F 450 SSBOND 1 CYS F 37 CYS F 439 1555 1555 2.03 SSBOND 2 CYS F 69 CYS F 212 1555 1555 2.04 SSBOND 3 CYS F 149 CYS F 458 1555 5663 2.03 SSBOND 4 CYS F 155 CYS F 290 1555 1555 2.06 SSBOND 5 CYS F 313 CYS F 343 1555 1555 2.04 SSBOND 6 CYS F 322 CYS F 333 1555 1555 2.03 SSBOND 7 CYS F 358 CYS F 367 1555 1555 2.10 SSBOND 8 CYS F 382 CYS F 393 1555 1555 2.07 SSBOND 9 CYS F 416 CYS F 422 1555 1555 2.09 LINK ND2 ASN F 500 C1 NAG F 602 1555 1555 1.44 CISPEP 1 THR F 245 PRO F 246 0 1.30 CRYST1 169.220 169.220 169.220 90.00 90.00 90.00 P 41 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005909 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005909 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005909 0.00000 CONECT 101 2875 CONECT 346 1116 CONECT 683 1736 CONECT 1116 346 CONECT 1736 683 CONECT 1916 2158 CONECT 1991 2070 CONECT 2070 1991 CONECT 2158 1916 CONECT 2267 2341 CONECT 2341 2267 CONECT 2452 2544 CONECT 2544 2452 CONECT 2703 2750 CONECT 2750 2703 CONECT 2875 101 CONECT 3353 3438 CONECT 3428 3429 3430 3432 3433 CONECT 3429 3428 3434 CONECT 3430 3428 3431 3435 3436 CONECT 3431 3430 3437 CONECT 3432 3428 CONECT 3433 3428 CONECT 3434 3429 CONECT 3435 3430 CONECT 3436 3430 CONECT 3437 3431 CONECT 3438 3353 3439 3449 CONECT 3439 3438 3440 3446 CONECT 3440 3439 3441 3447 CONECT 3441 3440 3442 3448 CONECT 3442 3441 3443 3449 CONECT 3443 3442 3450 CONECT 3444 3445 3446 3451 CONECT 3445 3444 CONECT 3446 3439 3444 CONECT 3447 3440 CONECT 3448 3441 CONECT 3449 3438 3442 CONECT 3450 3443 CONECT 3451 3444 MASTER 398 0 2 17 29 0 0 6 3456 1 41 39 END