HEADER VIRAL PROTEIN 22-FEB-24 8W3P TITLE CRYSTAL STRUCTURE OF PREFUSION-STABILIZED RSV F PROTEIN UFCR3-D(1TD0) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PREFUSION-STABILIZED RSV F PROTEIN UFCR3-D(1TD0); COMPND 3 CHAIN: F; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN RESPIRATORY SYNCYTIAL VIRUS A2; SOURCE 3 ORGANISM_TAXID: 11259; SOURCE 4 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 10029 KEYWDS RESPIRATORY SYNCYTIAL VIRUS, GLYCOPROTEIN, PREFUSION VACCINE, KEYWDS 2 STABILIZED, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.Z.LEE,R.L.STANFIELD,I.A.WILSON,J.ZHU REVDAT 1 15-JAN-25 8W3P 0 JRNL AUTH Y.Z.LEE,J.HAN,Y.N.ZHANG,G.WARD,K.BRAZ GOMES,S.AUCLAIR, JRNL AUTH 2 R.L.STANFIELD,L.HE,I.A.WILSON,J.ZHU JRNL TITL RATIONAL DESIGN OF UNCLEAVED PREFUSION-CLOSED TRIMER JRNL TITL 2 VACCINES FOR HUMAN RESPIRATORY SYNCYTIAL VIRUS AND JRNL TITL 3 METAPNEUMOVIRUS. JRNL REF NAT COMMUN V. 15 9939 2024 JRNL REFN ESSN 2041-1723 JRNL PMID 39550381 JRNL DOI 10.1038/S41467-024-54287-X REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.25 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 81.0 REMARK 3 NUMBER OF REFLECTIONS : 11811 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.730 REMARK 3 FREE R VALUE TEST SET COUNT : 559 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.2500 - 5.0800 1.00 3677 161 0.1871 0.2285 REMARK 3 2 5.0800 - 4.0300 0.96 3302 171 0.1811 0.1931 REMARK 3 3 4.0300 - 3.5200 0.81 2744 143 0.2233 0.2804 REMARK 3 4 3.5200 - 3.2000 0.45 1529 84 0.2897 0.3322 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.304 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.667 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 71.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 72.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 3536 REMARK 3 ANGLE : 1.721 4797 REMARK 3 CHIRALITY : 0.098 580 REMARK 3 PLANARITY : 0.013 606 REMARK 3 DIHEDRAL : 14.668 1320 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8W3P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-FEB-24. REMARK 100 THE DEPOSITION ID IS D_1000280351. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-NOV-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11826 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 37.250 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 80.9 REMARK 200 DATA REDUNDANCY : 33.00 REMARK 200 R MERGE (I) : 0.08382 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 31.8100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.32 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M TRI-SODIUM CITRATE, 20% PEG REMARK 280 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 85.35650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.35650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 85.35650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 85.35650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 85.35650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 85.35650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 85.35650 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 85.35650 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 85.35650 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 85.35650 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 85.35650 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 85.35650 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 85.35650 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 85.35650 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 85.35650 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 85.35650 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 85.35650 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 85.35650 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 128.03475 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 42.67825 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 42.67825 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 128.03475 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 128.03475 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 128.03475 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 42.67825 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 42.67825 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 128.03475 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 42.67825 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 128.03475 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 42.67825 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 128.03475 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 42.67825 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 42.67825 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 42.67825 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 128.03475 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 42.67825 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 128.03475 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 128.03475 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 128.03475 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 42.67825 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 42.67825 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 128.03475 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 128.03475 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 42.67825 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 42.67825 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 42.67825 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 42.67825 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 128.03475 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 42.67825 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 128.03475 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 42.67825 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 128.03475 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 128.03475 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 128.03475 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 55580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 170.71300 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 170.71300 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 -341.42600 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 -170.71300 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 341.42600 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 -170.71300 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET F -3 REMARK 465 GLY F -2 REMARK 465 ILE F -1 REMARK 465 LEU F 0 REMARK 465 PRO F 1 REMARK 465 SER F 2 REMARK 465 PRO F 3 REMARK 465 GLY F 4 REMARK 465 MET F 5 REMARK 465 PRO F 6 REMARK 465 ALA F 7 REMARK 465 LEU F 8 REMARK 465 LEU F 9 REMARK 465 SER F 10 REMARK 465 LEU F 11 REMARK 465 VAL F 12 REMARK 465 SER F 13 REMARK 465 LEU F 14 REMARK 465 LEU F 15 REMARK 465 SER F 16 REMARK 465 VAL F 17 REMARK 465 LEU F 18 REMARK 465 LEU F 19 REMARK 465 MET F 20 REMARK 465 GLY F 21 REMARK 465 CYS F 22 REMARK 465 VAL F 23 REMARK 465 ALA F 24 REMARK 465 GLU F 25 REMARK 465 ASP F 510 REMARK 465 GLU F 511 REMARK 465 LEU F 512 REMARK 465 LEU F 513 REMARK 465 ALA F 514 REMARK 465 SER F 515 REMARK 465 GLY F 516 REMARK 465 GLY F 517 REMARK 465 GLY F 518 REMARK 465 GLY F 519 REMARK 465 SER F 520 REMARK 465 GLU F 521 REMARK 465 VAL F 522 REMARK 465 ARG F 523 REMARK 465 ILE F 524 REMARK 465 PHE F 525 REMARK 465 ALA F 526 REMARK 465 GLY F 527 REMARK 465 ASN F 528 REMARK 465 ASP F 529 REMARK 465 PRO F 530 REMARK 465 ALA F 531 REMARK 465 HIS F 532 REMARK 465 THR F 533 REMARK 465 ALA F 534 REMARK 465 THR F 535 REMARK 465 GLY F 536 REMARK 465 SER F 537 REMARK 465 SER F 538 REMARK 465 GLY F 539 REMARK 465 ILE F 540 REMARK 465 SER F 541 REMARK 465 SER F 542 REMARK 465 PRO F 543 REMARK 465 THR F 544 REMARK 465 PRO F 545 REMARK 465 ALA F 546 REMARK 465 LEU F 547 REMARK 465 THR F 548 REMARK 465 PRO F 549 REMARK 465 LEU F 550 REMARK 465 MET F 551 REMARK 465 LEU F 552 REMARK 465 ASP F 553 REMARK 465 GLU F 554 REMARK 465 ALA F 555 REMARK 465 THR F 556 REMARK 465 GLY F 557 REMARK 465 LYS F 558 REMARK 465 LEU F 559 REMARK 465 VAL F 560 REMARK 465 VAL F 561 REMARK 465 TRP F 562 REMARK 465 ASP F 563 REMARK 465 GLY F 564 REMARK 465 GLN F 565 REMARK 465 LYS F 566 REMARK 465 ALA F 567 REMARK 465 GLY F 568 REMARK 465 SER F 569 REMARK 465 ALA F 570 REMARK 465 VAL F 571 REMARK 465 GLY F 572 REMARK 465 ILE F 573 REMARK 465 LEU F 574 REMARK 465 VAL F 575 REMARK 465 LEU F 576 REMARK 465 PRO F 577 REMARK 465 LEU F 578 REMARK 465 GLU F 579 REMARK 465 GLY F 580 REMARK 465 THR F 581 REMARK 465 GLU F 582 REMARK 465 THR F 583 REMARK 465 ALA F 584 REMARK 465 LEU F 585 REMARK 465 THR F 586 REMARK 465 TYR F 587 REMARK 465 TYR F 588 REMARK 465 LYS F 589 REMARK 465 SER F 590 REMARK 465 GLY F 591 REMARK 465 THR F 592 REMARK 465 PHE F 593 REMARK 465 ALA F 594 REMARK 465 THR F 595 REMARK 465 GLU F 596 REMARK 465 ALA F 597 REMARK 465 ILE F 598 REMARK 465 HIS F 599 REMARK 465 TRP F 600 REMARK 465 PRO F 601 REMARK 465 GLU F 602 REMARK 465 SER F 603 REMARK 465 VAL F 604 REMARK 465 ASP F 605 REMARK 465 GLU F 606 REMARK 465 HIS F 607 REMARK 465 LYS F 608 REMARK 465 LYS F 609 REMARK 465 ALA F 610 REMARK 465 ASN F 611 REMARK 465 ALA F 612 REMARK 465 PHE F 613 REMARK 465 ALA F 614 REMARK 465 GLY F 615 REMARK 465 SER F 616 REMARK 465 ALA F 617 REMARK 465 LEU F 618 REMARK 465 SER F 619 REMARK 465 HIS F 620 REMARK 465 ALA F 621 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN F 67 O VAL F 207 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS F 155 CA - CB - SG ANGL. DEV. = 6.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR F 72 -53.84 -137.06 REMARK 500 SER F 140 -131.06 68.57 REMARK 500 SER F 142 36.80 -74.62 REMARK 500 LYS F 209 -176.55 -63.06 REMARK 500 CYS F 290 -100.08 -96.74 REMARK 500 ASN F 371 65.97 -116.51 REMARK 500 VAL F 482 66.95 -103.70 REMARK 500 ASP F 486 31.49 -140.29 REMARK 500 REMARK 500 REMARK: NULL DBREF 8W3P F -3 621 PDB 8W3P 8W3P -3 621 SEQRES 1 F 590 MET GLY ILE LEU PRO SER PRO GLY MET PRO ALA LEU LEU SEQRES 2 F 590 SER LEU VAL SER LEU LEU SER VAL LEU LEU MET GLY CYS SEQRES 3 F 590 VAL ALA GLU GLN ASN ILE THR GLU GLU PHE TYR GLN SER SEQRES 4 F 590 THR CYS SER ALA VAL SER LYS GLY TYR LEU SER ALA LEU SEQRES 5 F 590 ARG THR GLY TRP TYR THR SER VAL ILE THR ILE GLU LEU SEQRES 6 F 590 SER ASN ILE LYS GLU ASN LYS CYS ASN GLY THR ASP ALA SEQRES 7 F 590 LYS VAL LYS LEU ILE LYS GLN GLU LEU ASP LYS TYR LYS SEQRES 8 F 590 ASN ALA VAL THR ASP LEU GLN LEU LEU MET GLN SER THR SEQRES 9 F 590 PRO ALA THR GLY SER GLY SER GLY SER GLY SER ALA ILE SEQRES 10 F 590 ALA SER GLY VAL ALA VAL CYS LYS VAL LEU HIS LEU GLU SEQRES 11 F 590 GLY GLU VAL ASN LYS ILE LYS SER ALA LEU LEU SER THR SEQRES 12 F 590 ASN LYS CYS VAL VAL SER LEU SER ASN GLY VAL SER VAL SEQRES 13 F 590 LEU CYS SER LYS VAL LEU ASP LEU LYS ASN TYR ILE ASP SEQRES 14 F 590 LYS GLN LEU LEU PRO ILE VAL ASN LYS GLN SER CYS SER SEQRES 15 F 590 ILE PRO ASN ILE GLU THR VAL ILE GLU PHE GLN GLN LYS SEQRES 16 F 590 ASN ASN ARG LEU LEU GLU ILE THR ARG GLU PHE SER VAL SEQRES 17 F 590 ASN ALA GLY VAL THR THR PRO VAL SER THR TYR MET LEU SEQRES 18 F 590 THR ASN SER GLU LEU LEU SER LEU ILE ASN ASP MET PRO SEQRES 19 F 590 ILE THR ASN ASP GLN LYS LYS LEU MET SER ASN ASN VAL SEQRES 20 F 590 GLN ILE VAL ARG GLN GLN SER TYR SER ILE MET CYS ILE SEQRES 21 F 590 ILE LYS GLU GLU VAL LEU ALA TYR VAL VAL GLN LEU PRO SEQRES 22 F 590 LEU TYR GLY VAL ILE ASP THR PRO CYS TRP LYS LEU HIS SEQRES 23 F 590 THR SER PRO LEU CYS THR THR ASN THR LYS GLU GLY SER SEQRES 24 F 590 ASN ILE CYS LEU THR ARG THR ASP ARG GLY TRP TYR CYS SEQRES 25 F 590 ASP ASN ALA GLY SER VAL SER PHE PHE PRO GLN ALA GLU SEQRES 26 F 590 THR CYS LYS VAL GLN SER ASN ARG VAL PHE CYS ASP THR SEQRES 27 F 590 MET ASN SER LEU THR LEU PRO SER GLU VAL ASN LEU CYS SEQRES 28 F 590 ASN VAL ASP ILE PHE ASN PRO LYS TYR ASP CYS LYS ILE SEQRES 29 F 590 MET THR SER LYS THR ASP VAL SER SER SER VAL ILE THR SEQRES 30 F 590 SER LEU GLY ALA ILE VAL SER CYS TYR GLY LYS THR LYS SEQRES 31 F 590 CYS THR ALA SER ASN LYS ASN ARG GLY ILE ILE LYS THR SEQRES 32 F 590 PHE SER ASN GLY CYS ASP TYR VAL SER ASN LYS GLY VAL SEQRES 33 F 590 ASP THR VAL SER VAL GLY ASN THR LEU TYR TYR VAL ASN SEQRES 34 F 590 LYS GLN GLU GLY LYS SER LEU TYR VAL LYS GLY GLU PRO SEQRES 35 F 590 ILE ILE ASN PHE TYR ASP PRO LEU VAL PHE PRO SER ASP SEQRES 36 F 590 GLU PHE ASP ALA SER ILE SER GLN VAL ASN GLU LYS ILE SEQRES 37 F 590 ASN GLN SER LEU ALA PHE ILE ARG LYS SER ASP GLU LEU SEQRES 38 F 590 LEU ALA SER GLY GLY GLY GLY SER GLU VAL ARG ILE PHE SEQRES 39 F 590 ALA GLY ASN ASP PRO ALA HIS THR ALA THR GLY SER SER SEQRES 40 F 590 GLY ILE SER SER PRO THR PRO ALA LEU THR PRO LEU MET SEQRES 41 F 590 LEU ASP GLU ALA THR GLY LYS LEU VAL VAL TRP ASP GLY SEQRES 42 F 590 GLN LYS ALA GLY SER ALA VAL GLY ILE LEU VAL LEU PRO SEQRES 43 F 590 LEU GLU GLY THR GLU THR ALA LEU THR TYR TYR LYS SER SEQRES 44 F 590 GLY THR PHE ALA THR GLU ALA ILE HIS TRP PRO GLU SER SEQRES 45 F 590 VAL ASP GLU HIS LYS LYS ALA ASN ALA PHE ALA GLY SER SEQRES 46 F 590 ALA LEU SER HIS ALA HET NAG F 701 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG C8 H15 N O6 HELIX 1 AA1 ASP F 73 GLN F 98 1 26 HELIX 2 AA2 ILE F 148 HIS F 159 1 12 HELIX 3 AA3 GLY F 162 LEU F 171 1 10 HELIX 4 AA4 LEU F 195 LEU F 203 1 9 HELIX 5 AA5 LEU F 203 ASN F 208 1 6 HELIX 6 AA6 ASN F 216 ASN F 240 1 25 HELIX 7 AA7 THR F 253 ASP F 263 1 11 HELIX 8 AA8 THR F 267 ASN F 277 1 11 HELIX 9 AA9 ASN F 277 GLN F 284 1 8 HELIX 10 AB1 GLN F 354 GLU F 356 5 3 HELIX 11 AB2 MET F 370 SER F 372 5 3 HELIX 12 AB3 PRO F 376 VAL F 379 5 4 HELIX 13 AB4 ASN F 380 ASP F 385 1 6 HELIX 14 AB5 PRO F 473 TYR F 478 5 6 HELIX 15 AB6 ILE F 492 LYS F 508 1 17 SHEET 1 AA1 7 CYS F 358 GLN F 361 0 SHEET 2 AA1 7 ARG F 364 ASP F 368 -1 O PHE F 366 N LYS F 359 SHEET 3 AA1 7 SER F 38 ARG F 49 1 N ARG F 49 O CYS F 367 SHEET 4 AA1 7 VAL F 308 THR F 318 -1 O HIS F 317 N ALA F 39 SHEET 5 AA1 7 GLY F 340 ASN F 345 -1 O TYR F 342 N TRP F 314 SHEET 6 AA1 7 SER F 348 PHE F 352 -1 O SER F 350 N CYS F 343 SHEET 7 AA1 7 LEU F 373 LEU F 375 -1 O LEU F 375 N VAL F 349 SHEET 1 AA2 5 CYS F 358 GLN F 361 0 SHEET 2 AA2 5 ARG F 364 ASP F 368 -1 O PHE F 366 N LYS F 359 SHEET 3 AA2 5 SER F 38 ARG F 49 1 N ARG F 49 O CYS F 367 SHEET 4 AA2 5 THR F 29 TYR F 33 -1 N TYR F 33 O SER F 38 SHEET 5 AA2 5 LYS F 465 VAL F 469 1 O VAL F 469 N PHE F 32 SHEET 1 AA3 6 LYS F 176 SER F 180 0 SHEET 2 AA3 6 SER F 186 ASP F 194 -1 O VAL F 187 N VAL F 179 SHEET 3 AA3 6 GLY F 51 GLU F 60 1 N THR F 58 O SER F 190 SHEET 4 AA3 6 VAL F 296 LEU F 305 -1 O TYR F 299 N ILE F 57 SHEET 5 AA3 6 TYR F 286 LYS F 293 -1 N ILE F 288 O VAL F 300 SHEET 6 AA3 6 VAL F 243 THR F 244 -1 N THR F 244 O SER F 287 SHEET 1 AA4 3 CYS F 333 ARG F 336 0 SHEET 2 AA4 3 LYS F 394 SER F 398 -1 O SER F 398 N CYS F 333 SHEET 3 AA4 3 ALA F 490 SER F 491 -1 O ALA F 490 N ILE F 395 SHEET 1 AA5 3 SER F 404 ILE F 407 0 SHEET 2 AA5 3 GLY F 411 CYS F 416 -1 O SER F 415 N SER F 404 SHEET 3 AA5 3 GLY F 438 SER F 443 -1 O ASP F 440 N VAL F 414 SHEET 1 AA6 4 GLY F 430 THR F 434 0 SHEET 2 AA6 4 CYS F 422 ASN F 426 -1 N ASN F 426 O GLY F 430 SHEET 3 AA6 4 THR F 449 VAL F 452 -1 O SER F 451 N THR F 423 SHEET 4 AA6 4 THR F 455 TYR F 458 -1 O TYR F 457 N VAL F 450 SSBOND 1 CYS F 37 CYS F 439 1555 1555 2.06 SSBOND 2 CYS F 69 CYS F 212 1555 1555 2.07 SSBOND 3 CYS F 155 CYS F 290 1555 1555 2.08 SSBOND 4 CYS F 177 CYS F 189 1555 1555 2.05 SSBOND 5 CYS F 313 CYS F 343 1555 1555 2.08 SSBOND 6 CYS F 322 CYS F 333 1555 1555 2.02 SSBOND 7 CYS F 358 CYS F 367 1555 1555 2.08 SSBOND 8 CYS F 382 CYS F 393 1555 1555 2.07 SSBOND 9 CYS F 416 CYS F 422 1555 1555 2.09 LINK ND2 ASN F 500 C1 NAG F 701 1555 1555 1.45 CISPEP 1 THR F 245 PRO F 246 0 0.00 CRYST1 170.713 170.713 170.713 90.00 90.00 90.00 P 41 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005858 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005858 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005858 0.00000 CONECT 101 2912 CONECT 348 1145 CONECT 712 1765 CONECT 880 960 CONECT 960 880 CONECT 1145 348 CONECT 1765 712 CONECT 1945 2187 CONECT 2020 2099 CONECT 2099 2020 CONECT 2187 1945 CONECT 2296 2378 CONECT 2378 2296 CONECT 2489 2581 CONECT 2581 2489 CONECT 2740 2787 CONECT 2787 2740 CONECT 2912 101 CONECT 3396 3471 CONECT 3471 3396 3472 3482 CONECT 3472 3471 3473 3479 CONECT 3473 3472 3474 3480 CONECT 3474 3473 3475 3481 CONECT 3475 3474 3476 3482 CONECT 3476 3475 3483 CONECT 3477 3478 3479 3484 CONECT 3478 3477 CONECT 3479 3472 3477 CONECT 3480 3473 CONECT 3481 3474 CONECT 3482 3471 3475 CONECT 3483 3476 CONECT 3484 3477 MASTER 483 0 1 15 28 0 0 6 3467 1 33 46 END