HEADER VIRAL PROTEIN 22-FEB-24 8W3Q TITLE CRYSTAL STRUCTURE OF PREFUSION-STABILIZED HMPV F PROTEIN UFCM1-P2-ISS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PREFUSION-STABILIZED HMPV F PROTEIN UFCM1-P2-ISS; COMPND 3 CHAIN: F; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN METAPNEUMOVIRUS; SOURCE 3 ORGANISM_TAXID: 162145; SOURCE 4 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 10029 KEYWDS RESPIRATORY SYNCYTIAL VIRUS, GLYCOPROTEIN, PREFUSION VACCINE, KEYWDS 2 STABILIZED, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.Z.LEE,R.L.STANFIELD,I.A.WILSON,J.ZHU REVDAT 1 15-JAN-25 8W3Q 0 JRNL AUTH Y.Z.LEE,J.HAN,Y.N.ZHANG,G.WARD,K.BRAZ GOMES,S.AUCLAIR, JRNL AUTH 2 R.L.STANFIELD,L.HE,I.A.WILSON,J.ZHU JRNL TITL RATIONAL DESIGN OF UNCLEAVED PREFUSION-CLOSED TRIMER JRNL TITL 2 VACCINES FOR HUMAN RESPIRATORY SYNCYTIAL VIRUS AND JRNL TITL 3 METAPNEUMOVIRUS. JRNL REF NAT COMMUN V. 15 9939 2024 JRNL REFN ESSN 2041-1723 JRNL PMID 39550381 JRNL DOI 10.1038/S41467-024-54287-X REMARK 2 REMARK 2 RESOLUTION. 5.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 5.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 2793 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.230 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.355 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.690 REMARK 3 FREE R VALUE TEST SET COUNT : 131 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.6400 - 5.9900 1.00 2662 131 0.2237 0.3546 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.570 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.410 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 308.0 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 252.0 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.018 3191 REMARK 3 ANGLE : 2.380 4322 REMARK 3 CHIRALITY : 0.105 517 REMARK 3 PLANARITY : 0.026 553 REMARK 3 DIHEDRAL : 13.662 1174 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8W3Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-FEB-24. REMARK 100 THE DEPOSITION ID IS D_1000280352. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-SEP-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 2793 REMARK 200 RESOLUTION RANGE HIGH (A) : 5.990 REMARK 200 RESOLUTION RANGE LOW (A) : 49.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 38.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.4200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 5.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 6.22 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.4M POTASSIUM DIHYDROGEN PHOSPHATE, REMARK 280 1.2M SODIUM DIHYDROGEN PHOSPHATE, 0.1M PHOSPHATE-CITRATE PH4.37, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y,-Z REMARK 290 16555 X,-Y,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z,-X,-Y+1/2 REMARK 290 19555 -Z,-X+1/2,Y REMARK 290 20555 -Z+1/2,X,-Y REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z,-X REMARK 290 23555 Y,-Z,-X+1/2 REMARK 290 24555 -Y,-Z+1/2,X REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 92.87250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 92.87250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 92.87250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 92.87250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 92.87250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 92.87250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 92.87250 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 92.87250 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 92.87250 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 92.87250 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 92.87250 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 92.87250 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 92.87250 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 92.87250 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 92.87250 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 92.87250 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 92.87250 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 92.87250 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 92.87250 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 92.87250 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 92.87250 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 92.87250 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 92.87250 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 92.87250 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 92.87250 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 92.87250 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 92.87250 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 92.87250 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 92.87250 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 92.87250 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 92.87250 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 92.87250 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 92.87250 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 92.87250 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 92.87250 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 92.87250 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 56000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET F 1 REMARK 465 SER F 2 REMARK 465 TRP F 3 REMARK 465 LYS F 4 REMARK 465 VAL F 5 REMARK 465 VAL F 6 REMARK 465 ILE F 7 REMARK 465 ILE F 8 REMARK 465 PHE F 9 REMARK 465 SER F 10 REMARK 465 LEU F 11 REMARK 465 LEU F 12 REMARK 465 ILE F 13 REMARK 465 THR F 14 REMARK 465 PRO F 15 REMARK 465 GLN F 16 REMARK 465 HIS F 17 REMARK 465 GLY F 18 REMARK 465 GLY F 88 REMARK 465 HIS F 89 REMARK 465 GLY F 90 REMARK 465 HIS F 91 REMARK 465 PRO F 92 REMARK 465 GLY F 93 REMARK 465 GLY F 94 REMARK 465 GLY F 95 REMARK 465 GLY F 96 REMARK 465 GLY F 97 REMARK 465 GLY F 98 REMARK 465 PHE F 99 REMARK 465 VAL F 100 REMARK 465 LEU F 101 REMARK 465 GLY F 102 REMARK 465 ALA F 103 REMARK 465 ILE F 104 REMARK 465 ALA F 105 REMARK 465 VAL F 438 REMARK 465 SER F 439 REMARK 465 SER F 440 REMARK 465 SER F 441 REMARK 465 PHE F 442 REMARK 465 ASP F 443 REMARK 465 PRO F 444 REMARK 465 VAL F 445 REMARK 465 LYS F 446 REMARK 465 PHE F 447 REMARK 465 PRO F 448 REMARK 465 GLU F 449 REMARK 465 ASP F 450 REMARK 465 GLN F 451 REMARK 465 PHE F 452 REMARK 465 ASN F 453 REMARK 465 LEU F 469 REMARK 465 VAL F 470 REMARK 465 ASP F 471 REMARK 465 GLN F 472 REMARK 465 SER F 473 REMARK 465 ASN F 474 REMARK 465 ARG F 475 REMARK 465 ILE F 476 REMARK 465 LEU F 477 REMARK 465 ALA F 478 REMARK 465 SER F 479 REMARK 465 GLY F 480 REMARK 465 TYR F 481 REMARK 465 ILE F 482 REMARK 465 PRO F 483 REMARK 465 GLU F 484 REMARK 465 ALA F 485 REMARK 465 PRO F 486 REMARK 465 ARG F 487 REMARK 465 ASP F 488 REMARK 465 GLY F 489 REMARK 465 GLN F 490 REMARK 465 ALA F 491 REMARK 465 TYR F 492 REMARK 465 VAL F 493 REMARK 465 ARG F 494 REMARK 465 LYS F 495 REMARK 465 ASP F 496 REMARK 465 GLY F 497 REMARK 465 GLU F 498 REMARK 465 TRP F 499 REMARK 465 VAL F 500 REMARK 465 LEU F 501 REMARK 465 LEU F 502 REMARK 465 SER F 503 REMARK 465 THR F 504 REMARK 465 PHE F 505 REMARK 465 LEU F 506 REMARK 465 GLY F 507 REMARK 465 SER F 508 REMARK 465 HIS F 509 REMARK 465 HIS F 510 REMARK 465 HIS F 511 REMARK 465 HIS F 512 REMARK 465 HIS F 513 REMARK 465 HIS F 514 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU F 217 OH TYR F 265 1.85 REMARK 500 O VAL F 165 OG1 THR F 170 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ALA F 143 C VAL F 144 N 0.180 REMARK 500 CYS F 331 CB CYS F 331 SG -0.107 REMARK 500 CYS F 422 CB CYS F 422 SG -0.114 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS F 28 CA - CB - SG ANGL. DEV. = 11.9 DEGREES REMARK 500 GLU F 51 CA - CB - CG ANGL. DEV. = 16.5 DEGREES REMARK 500 CYS F 60 CA - CB - SG ANGL. DEV. = 6.8 DEGREES REMARK 500 LEU F 106 CA - CB - CG ANGL. DEV. = 14.3 DEGREES REMARK 500 CYS F 116 CA - CB - SG ANGL. DEV. = 10.9 DEGREES REMARK 500 ALA F 143 O - C - N ANGL. DEV. = 11.3 DEGREES REMARK 500 LEU F 169 CA - CB - CG ANGL. DEV. = 21.0 DEGREES REMARK 500 MET F 218 CB - CG - SD ANGL. DEV. = -21.7 DEGREES REMARK 500 PRO F 231 C - N - CA ANGL. DEV. = 9.4 DEGREES REMARK 500 LEU F 241 CA - CB - CG ANGL. DEV. = -17.4 DEGREES REMARK 500 CYS F 357 CA - CB - SG ANGL. DEV. = 8.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP F 62 35.25 -92.83 REMARK 500 VAL F 108 -51.82 73.42 REMARK 500 CYS F 123 -2.68 -58.76 REMARK 500 GLU F 127 31.43 37.93 REMARK 500 ARG F 152 79.32 58.52 REMARK 500 LYS F 167 -80.14 -81.10 REMARK 500 ASN F 243 51.32 -105.94 REMARK 500 LYS F 320 -7.01 -59.43 REMARK 500 GLU F 341 -1.71 -57.88 REMARK 500 LYS F 397 145.87 -174.57 REMARK 500 ASP F 417 -116.30 51.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG F 125 0.12 SIDE CHAIN REMARK 500 ARG F 152 0.28 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 8W3Q F 1 514 PDB 8W3Q 8W3Q 1 514 SEQRES 1 F 514 MET SER TRP LYS VAL VAL ILE ILE PHE SER LEU LEU ILE SEQRES 2 F 514 THR PRO GLN HIS GLY LEU LYS GLU SER TYR LEU GLU GLU SEQRES 3 F 514 SER CYS SER THR ILE THR GLU GLY TYR LEU SER VAL LEU SEQRES 4 F 514 ARG THR GLY TRP TYR THR ASN VAL PHE THR LEU GLU VAL SEQRES 5 F 514 GLY ASP VAL GLU ASN LEU THR CYS ALA ASP GLY PRO SER SEQRES 6 F 514 LEU ILE LYS THR GLU LEU ASP LEU THR LYS SER ALA LEU SEQRES 7 F 514 ARG ASP LEU ARG THR VAL SER ALA ASP GLY HIS GLY HIS SEQRES 8 F 514 PRO GLY GLY GLY GLY GLY GLY PHE VAL LEU GLY ALA ILE SEQRES 9 F 514 ALA LEU GLY VAL ALA THR ALA ALA ALA VAL THR CYS GLY SEQRES 10 F 514 VAL ALA ILE ALA LYS CYS ILE ARG LEU GLU SER GLU VAL SEQRES 11 F 514 THR ALA ILE LYS ASN ALA LEU LYS LYS THR ASN GLU ALA SEQRES 12 F 514 VAL SER THR LEU GLY CYS GLY PRO ARG VAL LEU ALA THR SEQRES 13 F 514 ALA VAL ARG GLU LEU LYS ASP PHE VAL SER LYS ASN LEU SEQRES 14 F 514 THR ARG ALA ILE ASN LYS ASN LYS CYS ASP ILE PRO ASP SEQRES 15 F 514 LEU LYS MET ALA VAL SER PHE SER GLN PHE ASN ARG ARG SEQRES 16 F 514 PHE LEU ASN VAL VAL ARG GLN PHE SER ASP ASN ALA GLY SEQRES 17 F 514 ILE THR PRO ALA ILE SER LEU ASP LEU MET THR ASP ALA SEQRES 18 F 514 GLU LEU ALA ARG ALA VAL SER ASN MET PRO THR SER ALA SEQRES 19 F 514 GLY GLN ILE LYS LEU MET LEU GLU ASN ARG ALA MET VAL SEQRES 20 F 514 ARG ARG LYS GLY PHE GLY ILE LEU ILE GLY VAL TYR GLY SEQRES 21 F 514 SER SER VAL ILE TYR MET VAL GLN LEU PRO ILE PHE GLY SEQRES 22 F 514 VAL ILE ASP THR PRO CYS TRP ILE VAL LYS ALA ALA PRO SEQRES 23 F 514 SER CYS SER GLU LYS LYS GLY ASN TYR ALA CYS LEU LEU SEQRES 24 F 514 ARG GLU ASP GLN GLY TRP TYR CYS GLN ASN ALA GLY SER SEQRES 25 F 514 THR VAL TYR TYR PRO ASN GLU LYS ASP CYS GLU THR ARG SEQRES 26 F 514 GLY ASP HIS VAL PHE CYS ASP THR ALA ALA GLY ILE ASN SEQRES 27 F 514 VAL ALA GLU GLN SER LYS GLU CYS ASN ILE ASN ILE SER SEQRES 28 F 514 THR THR ASN TYR PRO CYS LYS VAL SER THR GLY ARG HIS SEQRES 29 F 514 PRO ILE SER MET VAL ALA LEU SER PRO LEU GLY ALA LEU SEQRES 30 F 514 VAL ALA CYS TYR LYS GLY VAL SER CYS SER ILE GLY SER SEQRES 31 F 514 ASN ARG VAL GLY ILE ILE LYS GLN LEU ASN LYS GLY CYS SEQRES 32 F 514 SER TYR ILE THR ASN GLN ASP ALA ASP THR VAL THR ILE SEQRES 33 F 514 ASP ASN THR VAL TYR CYS LEU SER LYS VAL GLU GLY GLU SEQRES 34 F 514 GLN HIS VAL ILE LYS GLY ARG PRO VAL SER SER SER PHE SEQRES 35 F 514 ASP PRO VAL LYS PHE PRO GLU ASP GLN PHE ASN VAL ALA SEQRES 36 F 514 LEU ASP GLN VAL PHE GLU SER ILE GLU ASN SER GLN ALA SEQRES 37 F 514 LEU VAL ASP GLN SER ASN ARG ILE LEU ALA SER GLY TYR SEQRES 38 F 514 ILE PRO GLU ALA PRO ARG ASP GLY GLN ALA TYR VAL ARG SEQRES 39 F 514 LYS ASP GLY GLU TRP VAL LEU LEU SER THR PHE LEU GLY SEQRES 40 F 514 SER HIS HIS HIS HIS HIS HIS HELIX 1 AA1 SER F 65 ARG F 82 1 18 HELIX 2 AA2 VAL F 108 LEU F 126 1 19 HELIX 3 AA3 SER F 128 LYS F 139 1 12 HELIX 4 AA4 ARG F 159 LYS F 167 1 9 HELIX 5 AA5 LYS F 167 ILE F 173 1 7 HELIX 6 AA6 ASN F 174 LYS F 177 5 4 HELIX 7 AA7 ASP F 182 ASN F 206 1 25 HELIX 8 AA8 THR F 219 ASN F 229 1 11 HELIX 9 AA9 SER F 233 ASN F 243 1 11 HELIX 10 AB1 ASN F 243 GLY F 251 1 9 HELIX 11 AB2 ASN F 318 LYS F 320 5 3 HELIX 12 AB3 ALA F 334 GLY F 336 5 3 HELIX 13 AB4 ALA F 340 SER F 343 5 4 HELIX 14 AB5 LYS F 344 ASN F 349 1 6 HELIX 15 AB6 ALA F 455 ALA F 468 1 14 SHEET 1 AA1 7 CYS F 322 ARG F 325 0 SHEET 2 AA1 7 HIS F 328 ASP F 332 -1 O PHE F 330 N GLU F 323 SHEET 3 AA1 7 SER F 29 ARG F 40 1 N ARG F 40 O CYS F 331 SHEET 4 AA1 7 VAL F 274 ALA F 284 -1 O VAL F 274 N LEU F 39 SHEET 5 AA1 7 GLY F 304 ASN F 309 -1 O GLN F 308 N PRO F 278 SHEET 6 AA1 7 SER F 312 TYR F 316 -1 O VAL F 314 N CYS F 307 SHEET 7 AA1 7 ILE F 337 VAL F 339 -1 O VAL F 339 N THR F 313 SHEET 1 AA2 5 CYS F 322 ARG F 325 0 SHEET 2 AA2 5 HIS F 328 ASP F 332 -1 O PHE F 330 N GLU F 323 SHEET 3 AA2 5 SER F 29 ARG F 40 1 N ARG F 40 O CYS F 331 SHEET 4 AA2 5 LYS F 20 LEU F 24 -1 N SER F 22 O ILE F 31 SHEET 5 AA2 5 GLU F 429 ILE F 433 1 O HIS F 431 N TYR F 23 SHEET 1 AA3 5 GLU F 142 SER F 145 0 SHEET 2 AA3 5 VAL F 153 VAL F 158 -1 O ALA F 155 N ALA F 143 SHEET 3 AA3 5 GLY F 42 GLU F 51 1 N THR F 49 O VAL F 158 SHEET 4 AA3 5 SER F 262 ILE F 271 -1 O LEU F 269 N TYR F 44 SHEET 5 AA3 5 PHE F 252 TYR F 259 -1 N ILE F 254 O MET F 266 SHEET 1 AA4 3 SER F 287 LYS F 291 0 SHEET 2 AA4 3 ASN F 294 ARG F 300 -1 O ASN F 294 N LYS F 291 SHEET 3 AA4 3 VAL F 359 GLY F 362 -1 O GLY F 362 N CYS F 297 SHEET 1 AA5 3 MET F 368 SER F 372 0 SHEET 2 AA5 3 GLY F 375 CYS F 380 -1 O ALA F 379 N MET F 368 SHEET 3 AA5 3 GLY F 402 THR F 407 -1 O SER F 404 N VAL F 378 SHEET 1 AA6 4 GLY F 394 GLN F 398 0 SHEET 2 AA6 4 CYS F 386 SER F 390 -1 N ILE F 388 O ILE F 396 SHEET 3 AA6 4 THR F 413 ILE F 416 -1 O THR F 415 N SER F 387 SHEET 4 AA6 4 THR F 419 CYS F 422 -1 O TYR F 421 N VAL F 414 SSBOND 1 CYS F 28 CYS F 403 1555 1555 2.04 SSBOND 2 CYS F 60 CYS F 178 1555 1555 2.04 SSBOND 3 CYS F 123 CYS F 149 1555 1555 2.03 SSBOND 4 CYS F 279 CYS F 307 1555 1555 2.05 SSBOND 5 CYS F 288 CYS F 297 1555 1555 2.05 SSBOND 6 CYS F 322 CYS F 331 1555 1555 2.03 SSBOND 7 CYS F 346 CYS F 357 1555 1555 2.02 SSBOND 8 CYS F 380 CYS F 386 1555 1555 2.05 CRYST1 185.745 185.745 185.745 90.00 90.00 90.00 I 21 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005384 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005384 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005384 0.00000 CONECT 82 2769 CONECT 333 1063 CONECT 644 837 CONECT 837 644 CONECT 1063 333 CONECT 1839 2063 CONECT 1906 1974 CONECT 1974 1906 CONECT 2063 1839 CONECT 2180 2253 CONECT 2253 2180 CONECT 2358 2443 CONECT 2443 2358 CONECT 2602 2646 CONECT 2646 2602 CONECT 2769 82 MASTER 490 0 0 15 27 0 0 6 3149 1 16 40 END