HEADER TRANSFERASE/INHIBITOR 30-AUG-23 8W7H TITLE PURINE NUCLEOSIDE PHOSPHORYLASE IN COMPLEX WITH MMV000848 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PURINE NUCLEOSIDE PHOSPHORYLASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM 3D7; SOURCE 3 ORGANISM_TAXID: 36329; SOURCE 4 GENE: PNP; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PNIC-CH KEYWDS PROTEIN BINDING, TRANSFERASE-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Z.CHUNG,J.Q.LIN,J.LESCAR REVDAT 2 31-JAN-24 8W7H 1 JRNL REVDAT 1 17-JAN-24 8W7H 0 JRNL AUTH Z.CHUNG,J.LIN,G.WIRJANATA,J.M.DZIEKAN,A.EL SAHILI, JRNL AUTH 2 P.R.PREISER,Z.BOZDECH,J.LESCAR JRNL TITL IDENTIFICATION AND STRUCTURAL VALIDATION OF PURINE JRNL TITL 2 NUCLEOSIDE PHOSPHORYLASE FROM PLASMODIUM FALCIPARUM AS A JRNL TITL 3 TARGET OF MMV000848. JRNL REF J.BIOL.CHEM. V. 300 05586 2023 JRNL REFN ESSN 1083-351X JRNL PMID 38141766 JRNL DOI 10.1016/J.JBC.2023.105586 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.17 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 20951 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.177 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1048 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.1700 - 4.4600 1.00 2739 144 0.1522 0.1167 REMARK 3 2 4.4500 - 3.5400 1.00 2734 147 0.1302 0.1485 REMARK 3 3 3.5400 - 3.0900 1.00 2748 140 0.1556 0.1539 REMARK 3 4 3.0900 - 2.8100 1.00 2726 144 0.1691 0.1675 REMARK 3 5 2.8100 - 2.6100 1.00 2745 142 0.1632 0.1904 REMARK 3 6 2.6100 - 2.4500 1.00 2732 143 0.1787 0.1746 REMARK 3 7 2.4500 - 2.3300 1.00 2715 144 0.1766 0.2056 REMARK 3 8 2.3300 - 2.2300 0.99 2727 145 0.2080 0.2501 REMARK 3 9 2.2300 - 2.1400 1.00 2743 146 0.2049 0.2095 REMARK 3 10 2.1400 - 2.0700 1.00 2689 146 0.2091 0.2222 REMARK 3 11 2.0700 - 2.0000 1.00 2733 145 0.2275 0.2435 REMARK 3 12 2.0000 - 1.9500 1.00 2709 144 0.2471 0.2981 REMARK 3 13 1.9500 - 1.9000 1.00 2723 145 0.3050 0.3337 REMARK 3 14 1.9000 - 1.8500 0.98 2701 140 0.3299 0.3454 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.208 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.17 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1872 REMARK 3 ANGLE : 1.150 2535 REMARK 3 CHIRALITY : 0.070 291 REMARK 3 PLANARITY : 0.008 322 REMARK 3 DIHEDRAL : 16.332 697 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8W7H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-SEP-23. REMARK 100 THE DEPOSITION ID IS D_1300040674. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-APR-23 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20977 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 33.170 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 20.30 REMARK 200 R MERGE (I) : 0.07430 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.4200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 20.70 REMARK 200 R MERGE FOR SHELL (I) : 0.92430 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.730 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% (W/V) PEG 1000, 10% (W/V) PEG REMARK 280 8000, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 47.80500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 27.60023 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 46.06667 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 47.80500 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 27.60023 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 46.06667 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 47.80500 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 27.60023 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 46.06667 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 47.80500 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 27.60023 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 46.06667 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 47.80500 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 27.60023 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 46.06667 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 47.80500 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 27.60023 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 46.06667 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 55.20046 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 92.13333 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 55.20046 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 92.13333 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 55.20046 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 92.13333 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 55.20046 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 92.13333 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 55.20046 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 92.13333 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 55.20046 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 92.13333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 DIHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = D3). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 -47.80500 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 82.80069 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 -0.866025 0.000000 47.80500 REMARK 350 BIOMT2 3 0.866025 -0.500000 0.000000 82.80069 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 -47.80500 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 27.60023 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 46.06668 REMARK 350 BIOMT1 5 -0.500000 -0.866025 0.000000 47.80500 REMARK 350 BIOMT2 5 -0.866025 0.500000 0.000000 27.60023 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 46.06668 REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 110.40092 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 46.06668 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NA NA A 303 LIES ON A SPECIAL POSITION. REMARK 375 NA NA A 304 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 420 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 476 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 483 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 556 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 568 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 ASN A 3 REMARK 465 TRP A 212 REMARK 465 ASP A 213 REMARK 465 GLU A 214 REMARK 465 GLY A 215 REMARK 465 ASP A 216 REMARK 465 PHE A 217 REMARK 465 ASP A 218 REMARK 465 ASN A 219 REMARK 465 ASN A 220 REMARK 465 LEU A 221 REMARK 465 ALA A 246 REMARK 465 HIS A 247 REMARK 465 HIS A 248 REMARK 465 HIS A 249 REMARK 465 HIS A 250 REMARK 465 HIS A 251 REMARK 465 HIS A 252 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 445 O HOH A 461 2.14 REMARK 500 O HOH A 428 O HOH A 537 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 535 O HOH A 547 10455 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 45 -135.79 54.97 REMARK 500 GLU A 114 58.38 -91.63 REMARK 500 GLU A 182 -167.97 -160.38 REMARK 500 GLU A 184 -18.16 -142.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASN A 146 -11.13 REMARK 500 ASN A 146 -10.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 564 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH A 565 DISTANCE = 6.74 ANGSTROMS REMARK 525 HOH A 566 DISTANCE = 6.84 ANGSTROMS REMARK 525 HOH A 567 DISTANCE = 7.86 ANGSTROMS REMARK 525 HOH A 568 DISTANCE = 8.04 ANGSTROMS REMARK 525 HOH A 569 DISTANCE = 8.09 ANGSTROMS REMARK 525 HOH A 570 DISTANCE = 9.36 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 303 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 46 OE1 REMARK 620 2 GLU A 46 OE1 0.0 REMARK 620 3 VAL A 66 O 157.1 157.1 REMARK 620 4 VAL A 66 O 157.1 157.1 0.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 304 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 68 OG REMARK 620 2 SER A 68 OG 0.0 REMARK 620 3 ASP A 158 OD2 56.9 56.9 REMARK 620 4 ASP A 158 OD2 56.9 56.9 0.0 REMARK 620 N 1 2 3 DBREF 8W7H A 1 245 UNP Q8I3X4 PNPH_PLAF7 1 245 SEQADV 8W7H ALA A 246 UNP Q8I3X4 EXPRESSION TAG SEQADV 8W7H HIS A 247 UNP Q8I3X4 EXPRESSION TAG SEQADV 8W7H HIS A 248 UNP Q8I3X4 EXPRESSION TAG SEQADV 8W7H HIS A 249 UNP Q8I3X4 EXPRESSION TAG SEQADV 8W7H HIS A 250 UNP Q8I3X4 EXPRESSION TAG SEQADV 8W7H HIS A 251 UNP Q8I3X4 EXPRESSION TAG SEQADV 8W7H HIS A 252 UNP Q8I3X4 EXPRESSION TAG SEQRES 1 A 252 MET ASP ASN LEU LEU ARG HIS LEU LYS ILE SER LYS GLU SEQRES 2 A 252 GLN ILE THR PRO VAL VAL LEU VAL VAL GLY ASP PRO GLY SEQRES 3 A 252 ARG VAL ASP LYS ILE LYS VAL VAL CYS ASP SER TYR VAL SEQRES 4 A 252 ASP LEU ALA TYR ASN ARG GLU TYR LYS SER VAL GLU CYS SEQRES 5 A 252 HIS TYR LYS GLY GLN LYS PHE LEU CYS VAL SER HIS GLY SEQRES 6 A 252 VAL GLY SER ALA GLY CYS ALA VAL CYS PHE GLU GLU LEU SEQRES 7 A 252 CYS GLN ASN GLY ALA LYS VAL ILE ILE ARG ALA GLY SER SEQRES 8 A 252 CYS GLY SER LEU GLN PRO ASP LEU ILE LYS ARG GLY ASP SEQRES 9 A 252 ILE CYS ILE CYS ASN ALA ALA VAL ARG GLU ASP ARG VAL SEQRES 10 A 252 SER HIS LEU LEU ILE HIS GLY ASP PHE PRO ALA VAL GLY SEQRES 11 A 252 ASP PHE ASP VAL TYR ASP THR LEU ASN LYS CYS ALA GLN SEQRES 12 A 252 GLU LEU ASN VAL PRO VAL PHE ASN GLY ILE SER VAL SER SEQRES 13 A 252 SER ASP MET TYR TYR PRO ASN LYS ILE ILE PRO SER ARG SEQRES 14 A 252 LEU GLU ASP TYR SER LYS ALA ASN ALA ALA VAL VAL GLU SEQRES 15 A 252 MET GLU LEU ALA THR LEU MET VAL ILE GLY THR LEU ARG SEQRES 16 A 252 LYS VAL LYS THR GLY GLY ILE LEU ILE VAL ASP GLY CYS SEQRES 17 A 252 PRO PHE LYS TRP ASP GLU GLY ASP PHE ASP ASN ASN LEU SEQRES 18 A 252 VAL PRO HIS GLN LEU GLU ASN MET ILE LYS ILE ALA LEU SEQRES 19 A 252 GLY ALA CYS ALA LYS LEU ALA THR LYS TYR ALA ALA HIS SEQRES 20 A 252 HIS HIS HIS HIS HIS HET XUH A 301 23 HET EDO A 302 4 HET NA A 303 1 HET NA A 304 1 HET PO4 A 305 5 HETNAM XUH (2R)-1-(9H-CARBAZOL-9-YL)-3-(CYCLOPENTYLAMINO)PROPAN-2- HETNAM 2 XUH OL HETNAM EDO 1,2-ETHANEDIOL HETNAM NA SODIUM ION HETNAM PO4 PHOSPHATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 XUH C20 H24 N2 O FORMUL 3 EDO C2 H6 O2 FORMUL 4 NA 2(NA 1+) FORMUL 6 PO4 O4 P 3- FORMUL 7 HOH *170(H2 O) HELIX 1 AA1 SER A 11 ILE A 15 5 5 HELIX 2 AA2 ASP A 24 VAL A 33 1 10 HELIX 3 AA3 GLY A 67 GLN A 80 1 14 HELIX 4 AA4 ARG A 116 ILE A 122 1 7 HELIX 5 AA5 ASP A 131 LEU A 145 1 15 HELIX 6 AA6 ARG A 169 ALA A 176 1 8 HELIX 7 AA7 GLU A 184 LYS A 196 1 13 HELIX 8 AA8 PRO A 223 ALA A 245 1 23 SHEET 1 AA1 9 SER A 37 ASN A 44 0 SHEET 2 AA1 9 TYR A 47 TYR A 54 -1 O GLU A 51 N VAL A 39 SHEET 3 AA1 9 GLN A 57 SER A 63 -1 O PHE A 59 N CYS A 52 SHEET 4 AA1 9 VAL A 18 VAL A 22 1 N LEU A 20 O LEU A 60 SHEET 5 AA1 9 VAL A 85 SER A 94 1 O ILE A 87 N VAL A 21 SHEET 6 AA1 9 VAL A 180 GLU A 182 -1 O VAL A 181 N GLY A 93 SHEET 7 AA1 9 PHE A 150 SER A 157 1 N VAL A 155 O VAL A 180 SHEET 8 AA1 9 ILE A 105 GLU A 114 1 N ILE A 105 O PHE A 150 SHEET 9 AA1 9 ALA A 128 VAL A 129 -1 O ALA A 128 N ALA A 111 SHEET 1 AA2 8 SER A 37 ASN A 44 0 SHEET 2 AA2 8 TYR A 47 TYR A 54 -1 O GLU A 51 N VAL A 39 SHEET 3 AA2 8 GLN A 57 SER A 63 -1 O PHE A 59 N CYS A 52 SHEET 4 AA2 8 VAL A 18 VAL A 22 1 N LEU A 20 O LEU A 60 SHEET 5 AA2 8 VAL A 85 SER A 94 1 O ILE A 87 N VAL A 21 SHEET 6 AA2 8 LYS A 198 VAL A 205 1 O ILE A 202 N ARG A 88 SHEET 7 AA2 8 ILE A 105 GLU A 114 -1 N CYS A 106 O LEU A 203 SHEET 8 AA2 8 ALA A 128 VAL A 129 -1 O ALA A 128 N ALA A 111 LINK OE1 GLU A 46 NA NA A 303 1555 1555 2.73 LINK OE1 GLU A 46 NA NA A 303 1555 10455 2.73 LINK O VAL A 66 NA NA A 303 1555 1555 2.76 LINK O VAL A 66 NA NA A 303 1555 10455 2.76 LINK OG SER A 68 NA NA A 304 1555 1555 2.91 LINK OG SER A 68 NA NA A 304 1555 10455 2.91 LINK OD2 ASP A 158 NA NA A 304 1555 1555 3.07 LINK OD2 ASP A 158 NA NA A 304 1555 10455 3.07 CRYST1 95.610 95.610 138.200 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010459 0.006039 0.000000 0.00000 SCALE2 0.000000 0.012077 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007236 0.00000