HEADER LIGASE 05-SEP-23 8W9I TITLE CRYSTAL STRUCTURE OF BACTERIAL PROLYL-TRNA SYNTHETASE IN COMPLEX WITH TITLE 2 INHIBITOR PAA-5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROLINE--TRNA LIGASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: PROS; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INHIBITOR, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.LUO,H.ZHOU REVDAT 1 11-SEP-24 8W9I 0 JRNL AUTH Z.LUO,H.ZHOU JRNL TITL STRUCTURE-GUIDED FLUORINE SCANNING ACCELERATES THE DISCOVERY JRNL TITL 2 OF POTENT AND SELECTIVE INHIBITORS AGAINST BACTERIAL JRNL TITL 3 PROLYL-TRNA SYNTHETASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0415 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 55512 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.028 REMARK 3 FREE R VALUE TEST SET COUNT : 2791 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.51 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3854 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.83 REMARK 3 BIN R VALUE (WORKING SET) : 0.2980 REMARK 3 BIN FREE R VALUE SET COUNT : 190 REMARK 3 BIN FREE R VALUE : 0.3570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8652 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 83 REMARK 3 SOLVENT ATOMS : 138 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.73900 REMARK 3 B22 (A**2) : -1.72600 REMARK 3 B33 (A**2) : -0.01200 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.383 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.254 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.202 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.114 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.931 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.908 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8900 ; 0.002 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 8423 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 12066 ; 0.811 ; 1.647 REMARK 3 BOND ANGLES OTHERS (DEGREES): 19352 ; 0.289 ; 1.574 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1133 ; 6.349 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 65 ; 3.364 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1423 ;12.739 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1359 ; 0.038 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 10757 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1987 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1601 ; 0.186 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 46 ; 0.166 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4312 ; 0.167 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 227 ; 0.105 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4541 ; 1.258 ; 4.205 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 4541 ; 1.257 ; 4.205 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5671 ; 2.166 ; 7.557 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 5672 ; 2.166 ; 7.558 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4359 ; 1.131 ; 4.185 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 4360 ; 1.131 ; 4.185 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 6395 ; 2.002 ; 7.688 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 6396 ; 2.002 ; 7.689 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8W9I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-SEP-23. REMARK 100 THE DEPOSITION ID IS D_1300040668. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-MAY-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55512 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 97.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.12600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.91100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM ACETATE, 0.1 M BIS REMARK 280 -TRIS, 26% PEG 3,350, PH 5.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.29200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 97.04200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.31100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 97.04200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.29200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.31100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 GLY A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 ARG A 571 REMARK 465 MET B -7 REMARK 465 GLY B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 SER B 9 REMARK 465 THR B 10 REMARK 465 LEU B 11 REMARK 465 LYS B 12 REMARK 465 GLU B 13 REMARK 465 THR B 14 REMARK 465 SER B 570 REMARK 465 ARG B 571 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A -1 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 87 CD OE1 OE2 REMARK 470 ASN A 123 OD1 ND2 REMARK 470 LYS A 126 CE NZ REMARK 470 GLN A 172 OE1 NE2 REMARK 470 VAL A 255 CG1 CG2 REMARK 470 ASP A 268 OD1 OD2 REMARK 470 GLN A 271 OE1 NE2 REMARK 470 LYS A 398 CE NZ REMARK 470 LYS A 404 CE NZ REMARK 470 LYS A 424 CE NZ REMARK 470 GLU A 430 OE1 OE2 REMARK 470 LYS A 433 CG CD CE NZ REMARK 470 GLU A 460 CG CD OE1 OE2 REMARK 470 LYS A 480 CD CE NZ REMARK 470 GLU A 482 OE1 OE2 REMARK 470 GLU A 484 CG CD OE1 OE2 REMARK 470 GLN A 488 CG CD OE1 NE2 REMARK 470 GLU A 496 CG CD OE1 OE2 REMARK 470 LYS A 512 CE NZ REMARK 470 ARG A 536 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 544 OE1 OE2 REMARK 470 ARG A 549 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 552 CG CD OE1 OE2 REMARK 470 HIS B 0 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 2 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 7 CD1 CD2 REMARK 470 LEU B 8 CG CD1 CD2 REMARK 470 ASP B 17 CG OD1 OD2 REMARK 470 GLU B 87 CD OE1 OE2 REMARK 470 GLN B 88 CD OE1 NE2 REMARK 470 GLN B 179 OE1 NE2 REMARK 470 SER B 205 OG REMARK 470 GLN B 271 CD OE1 NE2 REMARK 470 LYS B 398 CE NZ REMARK 470 LYS B 404 CE NZ REMARK 470 LYS B 418 CE NZ REMARK 470 LYS B 424 NZ REMARK 470 LYS B 433 CG CD CE NZ REMARK 470 GLU B 460 CG CD OE1 OE2 REMARK 470 LEU B 479 CD1 CD2 REMARK 470 LYS B 480 CD CE NZ REMARK 470 GLU B 482 CG CD OE1 OE2 REMARK 470 GLU B 484 CG CD OE1 OE2 REMARK 470 LYS B 487 CG CD CE NZ REMARK 470 GLN B 488 CG CD OE1 NE2 REMARK 470 LYS B 511 CG CD CE NZ REMARK 470 LYS B 512 CD CE NZ REMARK 470 ILE B 525 CD1 REMARK 470 ASP B 535 CG OD1 OD2 REMARK 470 ARG B 536 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 540 CG CD OE1 OE2 REMARK 470 LYS B 546 NZ REMARK 470 ARG B 549 CG CD NE CZ NH1 NH2 REMARK 470 SER B 551 OG REMARK 470 GLU B 552 CG CD OE1 OE2 REMARK 470 SER B 553 OG REMARK 470 LEU B 556 CD1 CD2 REMARK 470 ILE B 558 CG1 CG2 CD1 REMARK 470 GLU B 560 CG CD OE1 OE2 REMARK 470 ILE B 565 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 8 -146.23 56.78 REMARK 500 GLU A 374 -46.21 76.92 REMARK 500 VAL A 477 79.94 -116.80 REMARK 500 LYS A 480 62.31 63.22 REMARK 500 LEU A 569 54.06 -96.80 REMARK 500 ALA B 16 -58.60 80.61 REMARK 500 GLU B 374 -49.84 76.67 REMARK 500 TYR B 481 -19.92 -48.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 308 O REMARK 620 2 GLN A 310 O 90.8 REMARK 620 3 VAL A 313 O 97.1 74.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 308 O REMARK 620 2 GLN B 310 O 89.2 REMARK 620 3 VAL B 313 O 96.4 82.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 603 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO B 333 O REMARK 620 2 SER B 335 OG 121.1 REMARK 620 3 GLU B 364 OE2 123.2 109.6 REMARK 620 N 1 2 DBREF 8W9I A 1 571 UNP Q9I502 SYP_PSEAE 1 571 DBREF 8W9I B 1 571 UNP Q9I502 SYP_PSEAE 1 571 SEQADV 8W9I MET A -7 UNP Q9I502 INITIATING METHIONINE SEQADV 8W9I GLY A -6 UNP Q9I502 EXPRESSION TAG SEQADV 8W9I HIS A -5 UNP Q9I502 EXPRESSION TAG SEQADV 8W9I HIS A -4 UNP Q9I502 EXPRESSION TAG SEQADV 8W9I HIS A -3 UNP Q9I502 EXPRESSION TAG SEQADV 8W9I HIS A -2 UNP Q9I502 EXPRESSION TAG SEQADV 8W9I HIS A -1 UNP Q9I502 EXPRESSION TAG SEQADV 8W9I HIS A 0 UNP Q9I502 EXPRESSION TAG SEQADV 8W9I MET B -7 UNP Q9I502 INITIATING METHIONINE SEQADV 8W9I GLY B -6 UNP Q9I502 EXPRESSION TAG SEQADV 8W9I HIS B -5 UNP Q9I502 EXPRESSION TAG SEQADV 8W9I HIS B -4 UNP Q9I502 EXPRESSION TAG SEQADV 8W9I HIS B -3 UNP Q9I502 EXPRESSION TAG SEQADV 8W9I HIS B -2 UNP Q9I502 EXPRESSION TAG SEQADV 8W9I HIS B -1 UNP Q9I502 EXPRESSION TAG SEQADV 8W9I HIS B 0 UNP Q9I502 EXPRESSION TAG SEQRES 1 A 579 MET GLY HIS HIS HIS HIS HIS HIS MET ARG THR SER GLN SEQRES 2 A 579 TYR LEU LEU SER THR LEU LYS GLU THR PRO ALA ASP ALA SEQRES 3 A 579 VAL VAL ILE SER HIS GLN LEU LEU LEU ARG ALA GLY MET SEQRES 4 A 579 ILE ARG ARG LEU ALA SER GLY LEU TYR THR TRP LEU PRO SEQRES 5 A 579 MET GLY LEU ARG VAL LEU ARG LYS VAL GLU THR ILE VAL SEQRES 6 A 579 ARG GLU GLU MET ASN ALA ALA GLY ALA LEU GLU VAL LEU SEQRES 7 A 579 MET PRO ALA VAL GLN PRO ALA GLU LEU TRP GLN GLU SER SEQRES 8 A 579 GLY ARG TRP GLU GLN TYR GLY PRO GLU LEU LEU ARG LEU SEQRES 9 A 579 LYS ASP ARG HIS GLU ARG GLU PHE CYS VAL GLY PRO THR SEQRES 10 A 579 HIS GLU GLU VAL ILE THR ASP LEU ALA ARG ASN GLU LEU SEQRES 11 A 579 ASN SER TYR LYS GLN LEU PRO ILE ASN PHE TYR GLN ILE SEQRES 12 A 579 GLN THR LYS PHE ARG ASP GLU ILE ARG PRO ARG PHE GLY SEQRES 13 A 579 LEU MET ARG GLY ARG GLU PHE ILE MET LYS ASP ALA TYR SEQRES 14 A 579 SER PHE HIS LEU SER GLN ASP SER LEU GLN GLN THR TYR SEQRES 15 A 579 ASP GLY MET TYR GLN ALA TYR SER LYS ILE PHE SER ARG SEQRES 16 A 579 LEU GLY LEU ASP PHE ARG PRO VAL GLN ALA ASP ASN GLY SEQRES 17 A 579 SER ILE GLY GLY SER GLY SER HIS GLU PHE HIS VAL LEU SEQRES 18 A 579 ALA ASN SER GLY GLU ASP ASP ILE VAL PHE SER ASP SER SEQRES 19 A 579 SER ASP TYR ALA ALA ASN ILE GLU LYS ALA GLU ALA VAL SEQRES 20 A 579 PRO ARG GLU SER ALA ARG GLY SER ALA THR GLU ASP MET SEQRES 21 A 579 ARG LEU VAL ASP THR PRO ASN THR LYS THR ILE ALA ALA SEQRES 22 A 579 LEU VAL ASP GLY PHE GLN LEU PRO ILE GLU LYS THR ILE SEQRES 23 A 579 LYS THR LEU VAL VAL HIS GLY ALA GLU GLU GLY THR LEU SEQRES 24 A 579 VAL ALA LEU ILE VAL ARG GLY ASP HIS GLU LEU ASN GLU SEQRES 25 A 579 ILE LYS ALA ALA ASN GLN PRO LEU VAL ALA SER PRO LEU SEQRES 26 A 579 VAL PHE ALA SER GLU ALA GLU ILE ARG ALA ALA ILE GLY SEQRES 27 A 579 ALA GLY PRO GLY SER LEU GLY PRO VAL ASN LEU PRO ILE SEQRES 28 A 579 ALA CYS ILE VAL ASP ARG SER VAL ALA LEU MET SER ASP SEQRES 29 A 579 PHE ALA ALA GLY ALA ASN ILE GLU ASP LYS HIS TYR PHE SEQRES 30 A 579 GLY VAL ASN TRP GLU ARG ASP LEU PRO LEU PRO GLU VAL SEQRES 31 A 579 ALA ASP LEU ARG ASN VAL VAL GLU GLY ASP PRO SER PRO SEQRES 32 A 579 ASP GLY LYS GLY THR LEU VAL ILE LYS ARG GLY ILE GLU SEQRES 33 A 579 VAL GLY HIS ILE PHE GLN LEU GLY THR LYS TYR SER GLU SEQRES 34 A 579 ALA MET LYS LEU SER VAL LEU SER GLU GLN GLY LYS PRO SEQRES 35 A 579 VAL ASN LEU ILE MET GLY CYS TYR GLY ILE GLY VAL SER SEQRES 36 A 579 ARG VAL VAL ALA ALA ALA ILE GLU GLN ASN HIS ASP GLU SEQRES 37 A 579 ARG GLY ILE LEU TRP PRO SER ALA LEU ALA PRO PHE GLN SEQRES 38 A 579 ILE ALA LEU VAL PRO LEU LYS TYR GLU THR GLU SER VAL SEQRES 39 A 579 LYS GLN ALA THR ASP LYS LEU TYR ALA GLU LEU THR ALA SEQRES 40 A 579 ALA GLY PHE GLU VAL LEU LEU ASP ASP ARG ASP LYS LYS SEQRES 41 A 579 THR SER PRO GLY VAL LYS PHE ALA ASP MET GLU LEU ILE SEQRES 42 A 579 GLY ILE PRO HIS ARG ILE VAL ILE SER ASP ARG GLY LEU SEQRES 43 A 579 SER GLU GLY VAL LEU GLU TYR LYS GLY ARG ARG ASP SER SEQRES 44 A 579 GLU SER GLN ASN LEU PRO ILE GLY GLU LEU MET SER PHE SEQRES 45 A 579 ILE THR GLU LYS LEU SER ARG SEQRES 1 B 579 MET GLY HIS HIS HIS HIS HIS HIS MET ARG THR SER GLN SEQRES 2 B 579 TYR LEU LEU SER THR LEU LYS GLU THR PRO ALA ASP ALA SEQRES 3 B 579 VAL VAL ILE SER HIS GLN LEU LEU LEU ARG ALA GLY MET SEQRES 4 B 579 ILE ARG ARG LEU ALA SER GLY LEU TYR THR TRP LEU PRO SEQRES 5 B 579 MET GLY LEU ARG VAL LEU ARG LYS VAL GLU THR ILE VAL SEQRES 6 B 579 ARG GLU GLU MET ASN ALA ALA GLY ALA LEU GLU VAL LEU SEQRES 7 B 579 MET PRO ALA VAL GLN PRO ALA GLU LEU TRP GLN GLU SER SEQRES 8 B 579 GLY ARG TRP GLU GLN TYR GLY PRO GLU LEU LEU ARG LEU SEQRES 9 B 579 LYS ASP ARG HIS GLU ARG GLU PHE CYS VAL GLY PRO THR SEQRES 10 B 579 HIS GLU GLU VAL ILE THR ASP LEU ALA ARG ASN GLU LEU SEQRES 11 B 579 ASN SER TYR LYS GLN LEU PRO ILE ASN PHE TYR GLN ILE SEQRES 12 B 579 GLN THR LYS PHE ARG ASP GLU ILE ARG PRO ARG PHE GLY SEQRES 13 B 579 LEU MET ARG GLY ARG GLU PHE ILE MET LYS ASP ALA TYR SEQRES 14 B 579 SER PHE HIS LEU SER GLN ASP SER LEU GLN GLN THR TYR SEQRES 15 B 579 ASP GLY MET TYR GLN ALA TYR SER LYS ILE PHE SER ARG SEQRES 16 B 579 LEU GLY LEU ASP PHE ARG PRO VAL GLN ALA ASP ASN GLY SEQRES 17 B 579 SER ILE GLY GLY SER GLY SER HIS GLU PHE HIS VAL LEU SEQRES 18 B 579 ALA ASN SER GLY GLU ASP ASP ILE VAL PHE SER ASP SER SEQRES 19 B 579 SER ASP TYR ALA ALA ASN ILE GLU LYS ALA GLU ALA VAL SEQRES 20 B 579 PRO ARG GLU SER ALA ARG GLY SER ALA THR GLU ASP MET SEQRES 21 B 579 ARG LEU VAL ASP THR PRO ASN THR LYS THR ILE ALA ALA SEQRES 22 B 579 LEU VAL ASP GLY PHE GLN LEU PRO ILE GLU LYS THR ILE SEQRES 23 B 579 LYS THR LEU VAL VAL HIS GLY ALA GLU GLU GLY THR LEU SEQRES 24 B 579 VAL ALA LEU ILE VAL ARG GLY ASP HIS GLU LEU ASN GLU SEQRES 25 B 579 ILE LYS ALA ALA ASN GLN PRO LEU VAL ALA SER PRO LEU SEQRES 26 B 579 VAL PHE ALA SER GLU ALA GLU ILE ARG ALA ALA ILE GLY SEQRES 27 B 579 ALA GLY PRO GLY SER LEU GLY PRO VAL ASN LEU PRO ILE SEQRES 28 B 579 ALA CYS ILE VAL ASP ARG SER VAL ALA LEU MET SER ASP SEQRES 29 B 579 PHE ALA ALA GLY ALA ASN ILE GLU ASP LYS HIS TYR PHE SEQRES 30 B 579 GLY VAL ASN TRP GLU ARG ASP LEU PRO LEU PRO GLU VAL SEQRES 31 B 579 ALA ASP LEU ARG ASN VAL VAL GLU GLY ASP PRO SER PRO SEQRES 32 B 579 ASP GLY LYS GLY THR LEU VAL ILE LYS ARG GLY ILE GLU SEQRES 33 B 579 VAL GLY HIS ILE PHE GLN LEU GLY THR LYS TYR SER GLU SEQRES 34 B 579 ALA MET LYS LEU SER VAL LEU SER GLU GLN GLY LYS PRO SEQRES 35 B 579 VAL ASN LEU ILE MET GLY CYS TYR GLY ILE GLY VAL SER SEQRES 36 B 579 ARG VAL VAL ALA ALA ALA ILE GLU GLN ASN HIS ASP GLU SEQRES 37 B 579 ARG GLY ILE LEU TRP PRO SER ALA LEU ALA PRO PHE GLN SEQRES 38 B 579 ILE ALA LEU VAL PRO LEU LYS TYR GLU THR GLU SER VAL SEQRES 39 B 579 LYS GLN ALA THR ASP LYS LEU TYR ALA GLU LEU THR ALA SEQRES 40 B 579 ALA GLY PHE GLU VAL LEU LEU ASP ASP ARG ASP LYS LYS SEQRES 41 B 579 THR SER PRO GLY VAL LYS PHE ALA ASP MET GLU LEU ILE SEQRES 42 B 579 GLY ILE PRO HIS ARG ILE VAL ILE SER ASP ARG GLY LEU SEQRES 43 B 579 SER GLU GLY VAL LEU GLU TYR LYS GLY ARG ARG ASP SER SEQRES 44 B 579 GLU SER GLN ASN LEU PRO ILE GLY GLU LEU MET SER PHE SEQRES 45 B 579 ILE THR GLU LYS LEU SER ARG HET W2H A 601 28 HET MG A 602 1 HET EDO A 603 4 HET EDO A 604 4 HET EDO A 605 4 HET W2H B 601 28 HET MG B 602 1 HET MG B 603 1 HET EDO B 604 4 HET EDO B 605 4 HET EDO B 606 4 HETNAM W2H (2~{S})-~{N}-[3-(4-AZANYLQUINAZOLIN-7-YL) HETNAM 2 W2H PHENYL]SULFONYLPYRROLIDINE-2-CARBOXAMIDE HETNAM MG MAGNESIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 W2H 2(C19 H19 N5 O3 S) FORMUL 4 MG 3(MG 2+) FORMUL 5 EDO 6(C2 H6 O2) FORMUL 14 HOH *138(H2 O) HELIX 1 AA1 ARG A 2 LEU A 7 1 6 HELIX 2 AA2 VAL A 20 ALA A 29 1 10 HELIX 3 AA3 LEU A 43 ALA A 64 1 22 HELIX 4 AA4 ALA A 77 GLY A 84 1 8 HELIX 5 AA5 GLY A 84 TYR A 89 1 6 HELIX 6 AA6 HIS A 110 LEU A 122 1 13 HELIX 7 AA7 SER A 124 LEU A 128 5 5 HELIX 8 AA8 SER A 166 LEU A 188 1 23 HELIX 9 AA9 THR A 262 GLN A 271 1 10 HELIX 10 AB1 PRO A 273 LYS A 276 5 4 HELIX 11 AB2 ASN A 303 ASN A 309 1 7 HELIX 12 AB3 SER A 321 GLY A 330 1 10 HELIX 13 AB4 ARG A 349 LEU A 353 1 5 HELIX 14 AB5 THR A 417 MET A 423 1 7 HELIX 15 AB6 VAL A 446 ASN A 457 1 12 HELIX 16 AB7 THR A 483 GLY A 501 1 19 HELIX 17 AB8 SER A 514 GLY A 526 1 13 HELIX 18 AB9 SER A 534 SER A 539 1 6 HELIX 19 AC1 GLU A 560 LEU A 569 1 10 HELIX 20 AC2 ARG B 2 LEU B 7 1 6 HELIX 21 AC3 VAL B 20 ALA B 29 1 10 HELIX 22 AC4 LEU B 43 ALA B 64 1 22 HELIX 23 AC5 ALA B 77 GLY B 84 1 8 HELIX 24 AC6 GLY B 84 TYR B 89 1 6 HELIX 25 AC7 HIS B 110 LEU B 122 1 13 HELIX 26 AC8 SER B 124 LEU B 128 5 5 HELIX 27 AC9 SER B 166 LEU B 188 1 23 HELIX 28 AD1 THR B 262 GLN B 271 1 10 HELIX 29 AD2 PRO B 273 LYS B 276 5 4 HELIX 30 AD3 ASN B 303 GLN B 310 1 8 HELIX 31 AD4 SER B 321 GLY B 330 1 10 HELIX 32 AD5 ARG B 349 LEU B 353 1 5 HELIX 33 AD6 THR B 417 MET B 423 1 7 HELIX 34 AD7 VAL B 446 ASN B 457 1 12 HELIX 35 AD8 SER B 485 ALA B 500 1 16 HELIX 36 AD9 SER B 514 GLY B 526 1 13 HELIX 37 AE1 SER B 534 GLU B 540 1 7 HELIX 38 AE2 GLU B 560 LEU B 569 1 10 SHEET 1 AA1 2 ILE A 32 ALA A 36 0 SHEET 2 AA1 2 LEU A 39 TRP A 42 -1 O THR A 41 N ARG A 33 SHEET 1 AA210 LEU A 67 GLU A 68 0 SHEET 2 AA210 ILE A 130 PHE A 139 1 O ASN A 131 N LEU A 67 SHEET 3 AA210 GLU A 154 HIS A 164 -1 O TYR A 161 N PHE A 132 SHEET 4 AA210 ILE A 438 GLY A 445 -1 O TYR A 442 N ALA A 160 SHEET 5 AA210 LEU A 401 GLY A 416 -1 N PHE A 413 O CYS A 441 SHEET 6 AA210 ASP A 219 SER A 224 -1 N ILE A 221 O LYS A 404 SHEET 7 AA210 ALA A 230 ASN A 232 -1 O ALA A 231 N VAL A 222 SHEET 8 AA210 PHE A 192 ALA A 197 1 N GLN A 196 O ASN A 232 SHEET 9 AA210 SER A 207 LEU A 213 -1 O GLU A 209 N VAL A 195 SHEET 10 AA210 LEU A 401 GLY A 416 -1 O VAL A 409 N PHE A 210 SHEET 1 AA3 3 VAL A 74 PRO A 76 0 SHEET 2 AA3 3 GLU A 103 VAL A 106 -1 O CYS A 105 N GLN A 75 SHEET 3 AA3 3 LEU A 94 LYS A 97 -1 N LEU A 96 O PHE A 104 SHEET 1 AA4 3 ARG A 253 ASP A 256 0 SHEET 2 AA4 3 LYS A 366 VAL A 371 -1 O HIS A 367 N VAL A 255 SHEET 3 AA4 3 PHE A 357 GLY A 360 -1 N ALA A 359 O TYR A 368 SHEET 1 AA5 4 ILE A 278 HIS A 284 0 SHEET 2 AA5 4 LEU A 291 ARG A 297 -1 O LEU A 294 N LEU A 281 SHEET 3 AA5 4 ALA A 344 ASP A 348 1 O ALA A 344 N ALA A 293 SHEET 4 AA5 4 GLU A 381 ALA A 383 1 O GLU A 381 N VAL A 347 SHEET 1 AA6 2 SER A 426 LEU A 428 0 SHEET 2 AA6 2 PRO A 434 ASN A 436 -1 O VAL A 435 N VAL A 427 SHEET 1 AA7 2 HIS A 458 ASP A 459 0 SHEET 2 AA7 2 GLY A 462 ILE A 463 -1 O GLY A 462 N ASP A 459 SHEET 1 AA8 5 VAL A 504 LEU A 506 0 SHEET 2 AA8 5 ILE A 474 PRO A 478 1 N LEU A 476 O LEU A 505 SHEET 3 AA8 5 HIS A 529 ILE A 533 1 O ILE A 531 N ALA A 475 SHEET 4 AA8 5 VAL A 542 GLY A 547 -1 O GLU A 544 N VAL A 532 SHEET 5 AA8 5 GLN A 554 PRO A 557 -1 O LEU A 556 N LEU A 543 SHEET 1 AA9 2 ILE B 32 ALA B 36 0 SHEET 2 AA9 2 LEU B 39 TRP B 42 -1 O LEU B 39 N LEU B 35 SHEET 1 AB110 LEU B 67 GLU B 68 0 SHEET 2 AB110 ILE B 130 PHE B 139 1 O ASN B 131 N LEU B 67 SHEET 3 AB110 GLU B 154 HIS B 164 -1 O TYR B 161 N PHE B 132 SHEET 4 AB110 ILE B 438 GLY B 445 -1 O TYR B 442 N ALA B 160 SHEET 5 AB110 LEU B 401 GLY B 416 -1 N LEU B 415 O MET B 439 SHEET 6 AB110 ASP B 219 SER B 224 -1 N ILE B 221 O LYS B 404 SHEET 7 AB110 ALA B 230 ASN B 232 -1 O ALA B 231 N VAL B 222 SHEET 8 AB110 PHE B 192 GLN B 196 1 N GLN B 196 O ASN B 232 SHEET 9 AB110 SER B 207 LEU B 213 -1 O GLU B 209 N VAL B 195 SHEET 10 AB110 LEU B 401 GLY B 416 -1 O ILE B 412 N HIS B 208 SHEET 1 AB2 3 VAL B 74 PRO B 76 0 SHEET 2 AB2 3 GLU B 103 VAL B 106 -1 O CYS B 105 N GLN B 75 SHEET 3 AB2 3 LEU B 94 LYS B 97 -1 N LEU B 96 O PHE B 104 SHEET 1 AB3 3 ARG B 253 ASP B 256 0 SHEET 2 AB3 3 LYS B 366 VAL B 371 -1 O HIS B 367 N VAL B 255 SHEET 3 AB3 3 PHE B 357 GLY B 360 -1 N ALA B 359 O TYR B 368 SHEET 1 AB4 4 ILE B 278 HIS B 284 0 SHEET 2 AB4 4 LEU B 291 ARG B 297 -1 O LEU B 294 N LEU B 281 SHEET 3 AB4 4 ALA B 344 ASP B 348 1 O ALA B 344 N ALA B 293 SHEET 4 AB4 4 GLU B 381 ALA B 383 1 O GLU B 381 N VAL B 347 SHEET 1 AB5 2 SER B 426 LEU B 428 0 SHEET 2 AB5 2 PRO B 434 ASN B 436 -1 O VAL B 435 N VAL B 427 SHEET 1 AB6 2 HIS B 458 ASP B 459 0 SHEET 2 AB6 2 GLY B 462 ILE B 463 -1 O GLY B 462 N ASP B 459 SHEET 1 AB7 5 VAL B 504 LEU B 506 0 SHEET 2 AB7 5 ILE B 474 PRO B 478 1 N LEU B 476 O LEU B 505 SHEET 3 AB7 5 HIS B 529 ILE B 533 1 O ILE B 531 N VAL B 477 SHEET 4 AB7 5 VAL B 542 GLY B 547 -1 O GLU B 544 N VAL B 532 SHEET 5 AB7 5 GLN B 554 PRO B 557 -1 O LEU B 556 N LEU B 543 LINK O ALA A 308 MG MG A 602 1555 1555 2.40 LINK O GLN A 310 MG MG A 602 1555 1555 2.63 LINK O VAL A 313 MG MG A 602 1555 1555 2.42 LINK O ALA B 308 MG MG B 602 1555 1555 2.36 LINK O GLN B 310 MG MG B 602 1555 1555 2.33 LINK O VAL B 313 MG MG B 602 1555 1555 2.43 LINK O PRO B 333 MG MG B 603 1555 1555 2.96 LINK OG SER B 335 MG MG B 603 1555 1555 2.61 LINK OE2 GLU B 364 MG MG B 603 1555 1555 2.82 CISPEP 1 LEU A 128 PRO A 129 0 -5.15 CISPEP 2 SER A 315 PRO A 316 0 5.20 CISPEP 3 LEU B 128 PRO B 129 0 -4.32 CISPEP 4 SER B 315 PRO B 316 0 6.60 CRYST1 74.584 102.622 194.084 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013408 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009744 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005152 0.00000