HEADER PLANT PROTEIN 20-SEP-23 8WFO TITLE DURIO ZIBETHINUS TRYPSIN INHIBITOR DZTI-4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 21 KDA SEED PROTEIN-LIKE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DURIO ZIBETHINUS; SOURCE 3 ORGANISM_TAXID: 66656; SOURCE 4 STRAIN: CHANEE; SOURCE 5 GENE: LOC111287540; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SHUFFLE T7; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET32B KEYWDS KUNITZ-TYPE TRYPSIN INHIBITOR, SEED PROTEIN, DURIO ZIBETHINUS, PLANT KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.DEENTANYA,K.WANGKANONT REVDAT 2 30-OCT-24 8WFO 1 REMARK REVDAT 1 25-SEP-24 8WFO 0 JRNL AUTH P.DEENTANYA,K.WANGKANONT JRNL TITL DURIO ZIBETHINUS TRYPSIN INHIBITOR DZTI-4 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 64954 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 3289 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.6500 - 4.4000 1.00 2886 163 0.1816 0.1966 REMARK 3 2 4.4000 - 3.5000 1.00 2776 135 0.1456 0.1601 REMARK 3 3 3.5000 - 3.0600 1.00 2766 121 0.1591 0.1874 REMARK 3 4 3.0600 - 2.7800 1.00 2729 127 0.1626 0.1968 REMARK 3 5 2.7800 - 2.5800 1.00 2683 151 0.1730 0.1987 REMARK 3 6 2.5800 - 2.4300 1.00 2674 156 0.1777 0.2225 REMARK 3 7 2.4300 - 2.3000 1.00 2692 145 0.1752 0.1994 REMARK 3 8 2.3000 - 2.2000 1.00 2662 155 0.1692 0.2049 REMARK 3 9 2.2000 - 2.1200 1.00 2680 145 0.1701 0.2009 REMARK 3 10 2.1200 - 2.0500 1.00 2647 133 0.1771 0.2174 REMARK 3 11 2.0500 - 1.9800 1.00 2647 162 0.1739 0.2320 REMARK 3 12 1.9800 - 1.9300 1.00 2682 140 0.1810 0.2157 REMARK 3 13 1.9300 - 1.8700 1.00 2666 142 0.1828 0.2188 REMARK 3 14 1.8700 - 1.8300 1.00 2641 146 0.1787 0.1927 REMARK 3 15 1.8300 - 1.7900 1.00 2608 152 0.1798 0.2275 REMARK 3 16 1.7900 - 1.7500 1.00 2681 156 0.1901 0.2175 REMARK 3 17 1.7500 - 1.7100 1.00 2637 140 0.1991 0.2368 REMARK 3 18 1.7100 - 1.6800 1.00 2665 140 0.2086 0.2433 REMARK 3 19 1.6800 - 1.6500 1.00 2663 127 0.2215 0.2696 REMARK 3 20 1.6500 - 1.6200 1.00 2646 135 0.2303 0.2940 REMARK 3 21 1.6200 - 1.6000 1.00 2656 126 0.2375 0.2420 REMARK 3 22 1.6000 - 1.5700 1.00 2624 144 0.2473 0.2846 REMARK 3 23 1.5700 - 1.5500 1.00 2654 148 0.2773 0.3300 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.157 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.735 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.37 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3242 REMARK 3 ANGLE : 0.853 4400 REMARK 3 CHIRALITY : 0.058 478 REMARK 3 PLANARITY : 0.008 569 REMARK 3 DIHEDRAL : 16.669 1194 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8WFO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-SEP-23. REMARK 100 THE DEPOSITION ID IS D_1300041172. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-APR-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : C(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS JAN 10, 2022 BUILT=20220110 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.9 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65086 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 29.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.90500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM ACETATE, 100 MM ZINC REMARK 280 ACETATE, 40% PEG 1,000, PH 4.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.75000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.20200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.14050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.20200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.75000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.14050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 217 REMARK 465 ALA A 218 REMARK 465 LYS A 219 REMARK 465 ASN A 220 REMARK 465 ALA B 218 REMARK 465 LYS B 219 REMARK 465 ASN B 220 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 137 -166.14 -126.11 REMARK 500 THR A 138 -148.89 -117.27 REMARK 500 SER A 159 72.71 -114.27 REMARK 500 CYS A 169 65.32 -164.20 REMARK 500 CYS A 180 89.15 -152.02 REMARK 500 GLN B 67 83.02 -153.89 REMARK 500 ILE B 111 -71.81 -72.89 REMARK 500 THR B 137 -166.14 -127.65 REMARK 500 THR B 138 -151.94 -118.37 REMARK 500 CYS B 169 64.50 -156.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 654 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH B 655 DISTANCE = 6.69 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 309 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 28 OD1 REMARK 620 2 ASP A 66 OD2 78.2 REMARK 620 3 HOH A 468 O 172.0 102.1 REMARK 620 4 HOH A 476 O 100.4 115.1 86.8 REMARK 620 5 HOH A 526 O 84.6 148.6 91.4 93.6 REMARK 620 6 HOH A 575 O 89.8 64.3 83.2 169.5 89.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 308 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 29 OE1 REMARK 620 2 HOH A 459 O 91.1 REMARK 620 3 HOH A 542 O 84.4 71.9 REMARK 620 4 HOH A 566 O 91.1 84.8 156.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 306 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 37 OD1 REMARK 620 2 GLU A 38 OE1 95.4 REMARK 620 3 GLU A 38 OE2 93.7 59.1 REMARK 620 4 ASP B 79 OD1 90.9 23.2 36.6 REMARK 620 5 ASP B 79 OD2 92.2 22.1 37.3 1.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 307 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 79 OD1 REMARK 620 2 HOH A 412 O 65.3 REMARK 620 3 HOH A 590 O 64.9 2.2 REMARK 620 4 GLU B 38 OE1 65.4 1.3 1.0 REMARK 620 5 HOH B 477 O 65.5 3.5 1.5 2.2 REMARK 620 6 HOH B 556 O 63.7 2.5 1.2 1.8 2.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 311 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 92 OD2 REMARK 620 2 HOH A 561 O 77.7 REMARK 620 3 HOH A 593 O 112.8 159.6 REMARK 620 4 HOH A 611 O 149.5 74.6 97.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 304 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 125 OD1 REMARK 620 2 HOH A 418 O 82.8 REMARK 620 3 HOH A 529 O 90.2 171.7 REMARK 620 4 HOH A 573 O 103.1 85.9 91.2 REMARK 620 5 HOH A 605 O 158.0 85.7 102.3 94.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 305 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 128 OD1 REMARK 620 2 SER A 130 OG 83.1 REMARK 620 3 HOH A 436 O 89.8 72.7 REMARK 620 4 HOH A 545 O 92.6 170.1 98.4 REMARK 620 5 HOH A 546 O 87.6 102.8 175.1 85.9 REMARK 620 6 HOH A 563 O 169.7 93.6 98.5 92.1 83.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 139 OD1 REMARK 620 2 HOH A 599 O 114.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 305 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 161 OD1 REMARK 620 2 ASP B 128 OD1 53.7 REMARK 620 3 SER B 130 OG 51.4 2.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 310 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 188 NE2 REMARK 620 2 HOH A 511 O 85.5 REMARK 620 3 HOH A 588 O 102.4 106.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 307 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 431 O REMARK 620 2 ASP B 79 OD1 75.0 REMARK 620 3 HOH B 418 O 96.4 82.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 603 O REMARK 620 2 HOH B 513 O 70.0 REMARK 620 3 HOH B 597 O 145.8 98.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 308 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 66 OD1 REMARK 620 2 ASP B 66 OD2 59.2 REMARK 620 3 GLN B 214 OE1 36.1 45.7 REMARK 620 4 HOH B 432 O 92.3 81.4 59.3 REMARK 620 5 HOH B 541 O 88.3 99.1 121.4 179.3 REMARK 620 6 HOH B 596 O 161.5 104.2 138.3 93.2 86.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 309 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 81 OD2 REMARK 620 2 HOH B 429 O 78.4 REMARK 620 3 HOH B 548 O 150.6 72.5 REMARK 620 4 HOH B 606 O 106.7 145.5 99.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 310 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 92 OD2 REMARK 620 2 HOH B 524 O 91.5 REMARK 620 3 HOH B 590 O 102.0 140.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 306 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 125 OD1 REMARK 620 2 HOH B 422 O 88.0 REMARK 620 3 HOH B 502 O 85.5 89.2 REMARK 620 4 HOH B 532 O 87.2 173.4 94.9 REMARK 620 5 HOH B 589 O 98.0 85.7 173.8 90.4 REMARK 620 6 HOH B 611 O 175.1 91.8 89.6 93.4 86.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 304 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 188 NE2 REMARK 620 2 ASP B 189 OD2 96.9 REMARK 620 N 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8WE5 RELATED DB: PDB REMARK 900 MOLECULAR REPLACEMENT SEARCH MODEL THAT WILL BE PUBLISHED TOGETHER. DBREF1 8WFO A 27 220 UNP A0A6P5Y0F4_DURZI DBREF2 8WFO A A0A6P5Y0F4 27 220 DBREF1 8WFO B 27 220 UNP A0A6P5Y0F4_DURZI DBREF2 8WFO B A0A6P5Y0F4 27 220 SEQRES 1 A 194 LYS ASN GLU PRO VAL LEU ASP THR ASP GLY ASP GLU LEU SEQRES 2 A 194 ARG ALA GLY GLU GLN TYR TYR VAL VAL SER ALA ILE TRP SEQRES 3 A 194 GLY ALA GLY GLY GLY GLY LEU ALA LEU GLY ARG LEU THR SEQRES 4 A 194 ASP GLN LYS CYS PRO GLU ILE VAL VAL GLN ARG ARG SER SEQRES 5 A 194 ASP LEU ASP TYR GLY THR PRO VAL VAL PHE TYR ASN LEU SEQRES 6 A 194 ASP THR LYS ASP ASP ILE VAL ARG ARG SER THR ASP LEU SEQRES 7 A 194 ASN ILE GLN PHE VAL PRO ILE ARG ASP ARG LEU CYS LEU SEQRES 8 A 194 THR SER THR VAL TRP LYS ILE ASP ASP TYR ASP THR SER SEQRES 9 A 194 THR GLY LYS TRP TRP VAL THR THR ASP GLY VAL ILE GLY SEQRES 10 A 194 ASN PRO SER PRO GLN THR LEU GLN SER TRP PHE LYS ILE SEQRES 11 A 194 GLU LYS SER GLY ASN LEU GLY TYR LYS PHE ASN PHE CYS SEQRES 12 A 194 PRO SER VAL CYS GLU SER CYS VAL THR LEU CYS ASN ASP SEQRES 13 A 194 ILE GLY ARG TYR GLY HIS ASP GLY GLN ILE ARG LEU ALA SEQRES 14 A 194 LEU GLY GLU ASN ALA TRP PRO PHE VAL PHE LYS LYS ALA SEQRES 15 A 194 SER SER THR ILE LYS GLN VAL VAL ASN ALA LYS ASN SEQRES 1 B 194 LYS ASN GLU PRO VAL LEU ASP THR ASP GLY ASP GLU LEU SEQRES 2 B 194 ARG ALA GLY GLU GLN TYR TYR VAL VAL SER ALA ILE TRP SEQRES 3 B 194 GLY ALA GLY GLY GLY GLY LEU ALA LEU GLY ARG LEU THR SEQRES 4 B 194 ASP GLN LYS CYS PRO GLU ILE VAL VAL GLN ARG ARG SER SEQRES 5 B 194 ASP LEU ASP TYR GLY THR PRO VAL VAL PHE TYR ASN LEU SEQRES 6 B 194 ASP THR LYS ASP ASP ILE VAL ARG ARG SER THR ASP LEU SEQRES 7 B 194 ASN ILE GLN PHE VAL PRO ILE ARG ASP ARG LEU CYS LEU SEQRES 8 B 194 THR SER THR VAL TRP LYS ILE ASP ASP TYR ASP THR SER SEQRES 9 B 194 THR GLY LYS TRP TRP VAL THR THR ASP GLY VAL ILE GLY SEQRES 10 B 194 ASN PRO SER PRO GLN THR LEU GLN SER TRP PHE LYS ILE SEQRES 11 B 194 GLU LYS SER GLY ASN LEU GLY TYR LYS PHE ASN PHE CYS SEQRES 12 B 194 PRO SER VAL CYS GLU SER CYS VAL THR LEU CYS ASN ASP SEQRES 13 B 194 ILE GLY ARG TYR GLY HIS ASP GLY GLN ILE ARG LEU ALA SEQRES 14 B 194 LEU GLY GLU ASN ALA TRP PRO PHE VAL PHE LYS LYS ALA SEQRES 15 B 194 SER SER THR ILE LYS GLN VAL VAL ASN ALA LYS ASN HET ACT A 301 4 HET ZN A 302 1 HET ZN A 303 1 HET ZN A 304 1 HET ZN A 305 1 HET ZN A 306 1 HET ZN A 307 1 HET ZN A 308 1 HET ZN A 309 1 HET ZN A 310 1 HET ZN A 311 1 HET 1PE A 312 16 HET 1PE A 313 16 HET ZN B 301 1 HET ACT B 302 4 HET ACT B 303 4 HET ZN B 304 1 HET ZN B 305 1 HET ZN B 306 1 HET ZN B 307 1 HET ZN B 308 1 HET ZN B 309 1 HET ZN B 310 1 HET 1PE B 311 16 HETNAM ACT ACETATE ION HETNAM ZN ZINC ION HETNAM 1PE PENTAETHYLENE GLYCOL HETSYN 1PE PEG400 FORMUL 3 ACT 3(C2 H3 O2 1-) FORMUL 4 ZN 18(ZN 2+) FORMUL 14 1PE 3(C10 H22 O6) FORMUL 27 HOH *474(H2 O) HELIX 1 AA1 TRP A 52 GLY A 56 5 5 HELIX 2 AA2 SER A 146 TRP A 153 5 8 HELIX 3 AA3 TRP B 52 GLY B 56 5 5 HELIX 4 AA4 SER B 146 TRP B 153 5 8 HELIX 5 AA5 ALA B 208 LYS B 213 1 6 HELIX 6 AA6 GLN B 214 VAL B 216 5 3 SHEET 1 AA1 2 TYR A 45 SER A 49 0 SHEET 2 AA1 2 PHE A 203 LYS A 207 -1 O LYS A 206 N TYR A 46 SHEET 1 AA2 6 LEU A 59 GLY A 62 0 SHEET 2 AA2 6 ILE A 72 GLN A 75 -1 O VAL A 74 N ALA A 60 SHEET 3 AA2 6 GLN A 191 LEU A 196 -1 O ILE A 192 N GLN A 75 SHEET 4 AA2 6 ASN A 181 HIS A 188 -1 N TYR A 186 O ARG A 193 SHEET 5 AA2 6 TYR A 164 PHE A 168 -1 N PHE A 168 O ASN A 181 SHEET 6 AA2 6 LYS A 155 LYS A 158 -1 N LYS A 155 O ASN A 167 SHEET 1 AA3 2 VAL A 86 ASN A 90 0 SHEET 2 AA3 2 LEU A 104 PHE A 108 -1 O GLN A 107 N VAL A 87 SHEET 1 AA4 2 LYS A 123 ILE A 124 0 SHEET 2 AA4 2 VAL A 136 THR A 137 -1 O THR A 137 N LYS A 123 SHEET 1 AA5 4 LEU B 104 PHE B 108 0 SHEET 2 AA5 4 VAL B 86 ASN B 90 -1 N TYR B 89 O ASN B 105 SHEET 3 AA5 4 GLN B 44 SER B 49 -1 N TYR B 45 O VAL B 86 SHEET 4 AA5 4 PHE B 203 LYS B 207 -1 O VAL B 204 N VAL B 48 SHEET 1 AA6 6 LEU B 59 LEU B 64 0 SHEET 2 AA6 6 GLN B 67 GLN B 75 -1 O VAL B 74 N ALA B 60 SHEET 3 AA6 6 GLN B 191 LEU B 196 -1 O ILE B 192 N GLN B 75 SHEET 4 AA6 6 ASN B 181 HIS B 188 -1 N GLY B 184 O ALA B 195 SHEET 5 AA6 6 TYR B 164 PHE B 168 -1 N PHE B 168 O ASN B 181 SHEET 6 AA6 6 LYS B 155 LYS B 158 -1 N GLU B 157 O LYS B 165 SHEET 1 AA7 2 LYS B 123 ILE B 124 0 SHEET 2 AA7 2 VAL B 136 THR B 137 -1 O THR B 137 N LYS B 123 SSBOND 1 CYS A 69 CYS A 116 1555 1555 2.02 SSBOND 2 CYS A 169 CYS A 180 1555 1555 2.05 SSBOND 3 CYS A 173 CYS A 176 1555 1555 2.06 SSBOND 4 CYS B 69 CYS B 116 1555 1555 2.05 SSBOND 5 CYS B 169 CYS B 180 1555 1555 2.05 SSBOND 6 CYS B 173 CYS B 176 1555 1555 2.07 LINK OD1 ASN A 28 ZN ZN A 309 1555 1555 2.20 LINK OE1 GLU A 29 ZN ZN A 308 1555 1555 2.26 LINK OD1 ASP A 37 ZN ZN A 306 1555 1555 1.76 LINK OE1 GLU A 38 ZN ZN A 306 1555 1555 2.01 LINK OE2 GLU A 38 ZN ZN A 306 1555 1555 2.41 LINK OD2 ASP A 66 ZN ZN A 309 1555 3545 2.10 LINK OD1 ASP A 79 ZN ZN B 307 1555 2554 2.13 LINK OD2 ASP A 92 ZN ZN A 311 1555 1555 2.20 LINK OD1 ASP A 125 ZN ZN A 304 1555 1555 2.09 LINK OD1 ASP A 128 ZN ZN A 305 1555 1555 2.09 LINK OG SER A 130 ZN ZN A 305 1555 1555 2.00 LINK OD1 ASP A 139 ZN ZN A 302 1555 1555 2.55 LINK OD1 ASN A 161 ZN ZN B 305 1555 3555 2.03 LINK NE2 HIS A 188 ZN ZN A 310 1555 1555 2.30 LINK ZN ZN A 302 O HOH A 599 1555 1555 2.42 LINK ZN ZN A 303 O HOH B 640 1555 1555 2.29 LINK ZN ZN A 304 O HOH A 418 1555 1555 2.05 LINK ZN ZN A 304 O HOH A 529 1555 1555 2.24 LINK ZN ZN A 304 O HOH A 573 1555 1555 1.97 LINK ZN ZN A 304 O HOH A 605 1555 1555 2.15 LINK ZN ZN A 305 O HOH A 436 1555 1555 2.56 LINK ZN ZN A 305 O HOH A 545 1555 1555 2.05 LINK ZN ZN A 305 O HOH A 546 1555 1555 2.24 LINK ZN ZN A 305 O HOH A 563 1555 1555 2.21 LINK ZN ZN A 306 OD1 ASP B 79 2455 1555 2.17 LINK ZN ZN A 306 OD2 ASP B 79 2455 1555 1.92 LINK ZN ZN A 307 O HOH A 431 1555 1555 2.41 LINK ZN ZN A 307 OD1 ASP B 79 2455 1555 2.69 LINK ZN ZN A 307 O HOH B 418 1555 2454 2.34 LINK ZN ZN A 308 O HOH A 459 1555 1555 1.98 LINK ZN ZN A 308 O HOH A 542 1555 1555 2.18 LINK ZN ZN A 308 O HOH A 566 1555 1555 2.08 LINK ZN ZN A 309 O HOH A 468 1555 3555 2.20 LINK ZN ZN A 309 O HOH A 476 1555 3555 2.01 LINK ZN ZN A 309 O HOH A 526 1555 1555 2.13 LINK ZN ZN A 309 O HOH A 575 1555 3555 2.35 LINK ZN ZN A 310 O HOH A 511 1555 1555 2.69 LINK ZN ZN A 310 O HOH A 588 1555 1555 2.24 LINK ZN ZN A 311 O HOH A 561 1555 1555 2.63 LINK ZN ZN A 311 O HOH A 593 1555 1555 2.27 LINK ZN ZN A 311 O HOH A 611 1555 1555 2.42 LINK O HOH A 412 ZN ZN B 307 2555 1555 2.08 LINK O HOH A 590 ZN ZN B 307 2555 1555 2.39 LINK O HOH A 603 ZN ZN B 301 2555 1555 2.42 LINK OE1 GLU B 38 ZN ZN B 307 1555 1555 2.08 LINK OD1 ASP B 66 ZN ZN B 308 1555 1555 2.38 LINK OD2 ASP B 66 ZN ZN B 308 1555 1555 2.03 LINK OD2 ASP B 81 ZN ZN B 309 1555 1555 2.19 LINK OD2 ASP B 92 ZN ZN B 310 1555 1555 1.98 LINK OD1 ASP B 125 ZN ZN B 306 1555 1555 2.11 LINK OD1 ASP B 128 ZN ZN B 305 1555 1555 2.07 LINK OG SER B 130 ZN ZN B 305 1555 1555 1.85 LINK NE2 HIS B 188 ZN ZN B 304 1555 1555 2.32 LINK OD2 ASP B 189 ZN ZN B 304 1555 1555 2.02 LINK OE1 GLN B 214 ZN ZN B 308 1555 4546 1.98 LINK ZN ZN B 301 O HOH B 513 1555 1555 2.48 LINK ZN ZN B 301 O HOH B 597 1555 1555 2.48 LINK ZN ZN B 306 O HOH B 422 1555 1555 2.05 LINK ZN ZN B 306 O HOH B 502 1555 1555 2.00 LINK ZN ZN B 306 O HOH B 532 1555 1555 2.04 LINK ZN ZN B 306 O HOH B 589 1555 1555 2.05 LINK ZN ZN B 306 O HOH B 611 1555 1555 2.25 LINK ZN ZN B 307 O HOH B 477 1555 1555 2.03 LINK ZN ZN B 307 O HOH B 556 1555 1555 1.91 LINK ZN ZN B 308 O HOH B 432 1555 1555 1.98 LINK ZN ZN B 308 O HOH B 541 1555 4446 2.07 LINK ZN ZN B 308 O HOH B 596 1555 1555 2.07 LINK ZN ZN B 309 O HOH B 429 1555 1555 1.91 LINK ZN ZN B 309 O HOH B 548 1555 4446 2.47 LINK ZN ZN B 309 O HOH B 606 1555 1555 2.05 LINK ZN ZN B 310 O HOH B 524 1555 1555 2.66 LINK ZN ZN B 310 O HOH B 590 1555 1555 2.07 CISPEP 1 CYS A 69 PRO A 70 0 -0.86 CISPEP 2 CYS B 69 PRO B 70 0 1.38 CRYST1 53.500 64.281 128.404 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018692 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015557 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007788 0.00000