HEADER TRANSFERASE 24-SEP-23 8WIL TITLE CRYSTAL STRUCTURE OF JINGMEN TICK VIRUS RNA-DEPENDENT RNA POLYMERASE TITLE 2 (D55 CONSTRUCT) COMPND MOL_ID: 1; COMPND 2 MOLECULE: JINGMEN TICK VIRUS NSP1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: JINGMEN TICK VIRUS; SOURCE 3 ORGANISM_TAXID: 1491393; SOURCE 4 STRAIN: YN-FLAVIV; SOURCE 5 GENE: SEGMENT1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: -ROSETTA KEYWDS RNA VIRUS, FLAVI-LIKE VIRUSES, JINGMEN TICK VIRUS, RNA-DEPENDENT RNA KEYWDS 2 POLYMERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR X.WANG,X.JING,F.DENG,P.GONG REVDAT 3 24-APR-24 8WIL 1 JRNL REVDAT 2 06-MAR-24 8WIL 1 JRNL REVDAT 1 17-JAN-24 8WIL 0 JRNL AUTH X.WANG,X.JING,J.SHI,Q.LIU,S.SHEN,P.P.CHEUNG,J.WU,F.DENG, JRNL AUTH 2 P.GONG JRNL TITL A JINGMENVIRUS RNA-DEPENDENT RNA POLYMERASE STRUCTURALLY JRNL TITL 2 RESEMBLES THE FLAVIVIRUS COUNTERPART BUT WITH DIFFERENT JRNL TITL 3 FEATURES AT THE INITIATION PHASE. JRNL REF NUCLEIC ACIDS RES. V. 52 3278 2024 JRNL REFN ESSN 1362-4962 JRNL PMID 38296832 JRNL DOI 10.1093/NAR/GKAE042 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.19.2_4158: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.76 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 39850 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1954 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.7600 - 5.0600 1.00 2884 155 0.1880 0.2102 REMARK 3 2 5.0600 - 4.0200 1.00 2781 127 0.1439 0.1650 REMARK 3 3 4.0200 - 3.5100 1.00 2742 135 0.1531 0.1803 REMARK 3 4 3.5100 - 3.1900 1.00 2719 127 0.1684 0.1759 REMARK 3 5 3.1900 - 2.9600 1.00 2705 138 0.1837 0.2189 REMARK 3 6 2.9600 - 2.7900 1.00 2678 151 0.1792 0.2221 REMARK 3 7 2.7900 - 2.6500 1.00 2684 150 0.1769 0.2305 REMARK 3 8 2.6500 - 2.5300 1.00 2693 135 0.1800 0.1965 REMARK 3 9 2.5300 - 2.4300 1.00 2680 126 0.1747 0.2291 REMARK 3 10 2.4300 - 2.3500 1.00 2669 138 0.1887 0.2592 REMARK 3 11 2.3500 - 2.2800 1.00 2651 147 0.1877 0.2446 REMARK 3 12 2.2800 - 2.2100 1.00 2664 150 0.1818 0.2385 REMARK 3 13 2.2100 - 2.1500 1.00 2694 135 0.1784 0.2521 REMARK 3 14 2.1500 - 2.1000 1.00 2652 140 0.1886 0.2435 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.800 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4668 REMARK 3 ANGLE : 0.851 6322 REMARK 3 CHIRALITY : 0.049 694 REMARK 3 PLANARITY : 0.008 805 REMARK 3 DIHEDRAL : 7.557 667 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8WIL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-SEP-23. REMARK 100 THE DEPOSITION ID IS D_1300034667. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-DEC-19 REMARK 200 TEMPERATURE (KELVIN) : 289 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40074 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 60.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 18.90 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 19.10 REMARK 200 R MERGE FOR SHELL (I) : 0.50800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: IN-HOUSE MODEL DETERMINED BY SAD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MAGNESIUM CHLORIDE, HEPES PH7.5, REMARK 280 PEG3350, VAPOR DIFFUSION, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.75950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.88400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.59250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.88400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.75950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.59250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 55 REMARK 465 GLU A 56 REMARK 465 PRO A 57 REMARK 465 THR A 58 REMARK 465 LEU A 59 REMARK 465 GLY A 60 REMARK 465 ASP A 61 REMARK 465 PRO A 62 REMARK 465 THR A 63 REMARK 465 GLU A 64 REMARK 465 LEU A 65 REMARK 465 GLY A 66 REMARK 465 ARG A 67 REMARK 465 GLN A 68 REMARK 465 ALA A 69 REMARK 465 LYS A 70 REMARK 465 LYS A 71 REMARK 465 GLU A 72 REMARK 465 MET A 73 REMARK 465 ASN A 74 REMARK 465 ALA A 75 REMARK 465 MET A 76 REMARK 465 THR A 77 REMARK 465 TYR A 78 REMARK 465 GLU A 79 REMARK 465 GLU A 80 REMARK 465 PHE A 81 REMARK 465 ASP A 82 REMARK 465 ARG A 83 REMARK 465 MET A 84 REMARK 465 LYS A 85 REMARK 465 PHE A 86 REMARK 465 ARG A 87 REMARK 465 GLY A 88 REMARK 465 VAL A 89 REMARK 465 VAL A 90 REMARK 465 ALA A 91 REMARK 465 GLU A 92 REMARK 465 VAL A 93 REMARK 465 TYR A 94 REMARK 465 ALA A 95 REMARK 465 GLY A 96 REMARK 465 ASP A 97 REMARK 465 LYS A 98 REMARK 465 PRO A 99 REMARK 465 SER A 100 REMARK 465 LYS A 101 REMARK 465 GLY A 102 REMARK 465 TYR A 103 REMARK 465 ASP A 104 REMARK 465 LYS A 105 REMARK 465 LEU A 106 REMARK 465 ARG A 107 REMARK 465 THR A 108 REMARK 465 LEU A 109 REMARK 465 LEU A 110 REMARK 465 ASP A 111 REMARK 465 LEU A 112 REMARK 465 MET A 113 REMARK 465 ASP A 114 REMARK 465 ARG A 115 REMARK 465 PRO A 116 REMARK 465 LYS A 117 REMARK 465 LEU A 118 REMARK 465 GLY A 119 REMARK 465 THR A 120 REMARK 465 THR A 121 REMARK 465 VAL A 122 REMARK 465 ASP A 123 REMARK 465 LEU A 124 REMARK 465 CYS A 125 REMARK 465 ALA A 126 REMARK 465 GLY A 127 REMARK 465 ARG A 128 REMARK 465 GLY A 129 REMARK 465 GLY A 130 REMARK 465 TRP A 131 REMARK 465 SER A 132 REMARK 465 GLN A 133 REMARK 465 LEU A 134 REMARK 465 VAL A 135 REMARK 465 GLY A 136 REMARK 465 GLU A 137 REMARK 465 LEU A 138 REMARK 465 GLU A 139 REMARK 465 GLY A 140 REMARK 465 PRO A 141 REMARK 465 GLY A 142 REMARK 465 ASP A 143 REMARK 465 ILE A 144 REMARK 465 THR A 145 REMARK 465 ALA A 146 REMARK 465 VAL A 147 REMARK 465 SER A 148 REMARK 465 LEU A 149 REMARK 465 TRP A 150 REMARK 465 GLU A 151 REMARK 465 ARG A 152 REMARK 465 GLY A 153 REMARK 465 ARG A 154 REMARK 465 GLU A 155 REMARK 465 GLU A 156 REMARK 465 TRP A 157 REMARK 465 MET A 158 REMARK 465 ALA A 159 REMARK 465 ASP A 160 REMARK 465 PRO A 161 REMARK 465 ALA A 162 REMARK 465 ILE A 163 REMARK 465 ARG A 164 REMARK 465 ARG A 165 REMARK 465 ILE A 166 REMARK 465 ASN A 167 REMARK 465 ALA A 168 REMARK 465 ASN A 169 REMARK 465 VAL A 170 REMARK 465 LYS A 171 REMARK 465 ASN A 172 REMARK 465 VAL A 173 REMARK 465 LYS A 174 REMARK 465 PRO A 175 REMARK 465 TRP A 176 REMARK 465 ARG A 177 REMARK 465 VAL A 178 REMARK 465 ASP A 179 REMARK 465 THR A 180 REMARK 465 LEU A 181 REMARK 465 LEU A 182 REMARK 465 PHE A 183 REMARK 465 ASP A 184 REMARK 465 GLY A 185 REMARK 465 GLY A 186 REMARK 465 GLU A 187 REMARK 465 THR A 188 REMARK 465 PHE A 189 REMARK 465 LYS A 190 REMARK 465 ARG A 191 REMARK 465 ASP A 192 REMARK 465 GLN A 193 REMARK 465 ASN A 194 REMARK 465 ILE A 195 REMARK 465 MET A 196 REMARK 465 LYS A 197 REMARK 465 GLU A 198 REMARK 465 GLU A 199 REMARK 465 SER A 200 REMARK 465 TYR A 201 REMARK 465 ASN A 202 REMARK 465 ASP A 203 REMARK 465 ALA A 204 REMARK 465 LEU A 205 REMARK 465 LEU A 206 REMARK 465 ASP A 207 REMARK 465 ALA A 208 REMARK 465 VAL A 209 REMARK 465 ASP A 210 REMARK 465 ALA A 211 REMARK 465 TRP A 212 REMARK 465 MET A 213 REMARK 465 MET A 214 REMARK 465 GLN A 215 REMARK 465 ALA A 216 REMARK 465 THR A 217 REMARK 465 PRO A 218 REMARK 465 PRO A 219 REMARK 465 THR A 220 REMARK 465 ASN A 221 REMARK 465 PHE A 222 REMARK 465 VAL A 223 REMARK 465 ILE A 224 REMARK 465 LYS A 225 REMARK 465 ILE A 226 REMARK 465 GLN A 227 REMARK 465 VAL A 228 REMARK 465 PRO A 229 REMARK 465 TYR A 230 REMARK 465 THR A 231 REMARK 465 GLN A 232 REMARK 465 LYS A 233 REMARK 465 ALA A 234 REMARK 465 MET A 235 REMARK 465 ARG A 236 REMARK 465 LEU A 237 REMARK 465 ILE A 238 REMARK 465 GLU A 239 REMARK 465 LYS A 240 REMARK 465 TRP A 241 REMARK 465 GLN A 242 REMARK 465 VAL A 243 REMARK 465 LYS A 244 REMARK 465 THR A 245 REMARK 465 LYS A 246 REMARK 465 LYS A 247 REMARK 465 GLY A 248 REMARK 465 ARG A 249 REMARK 465 LEU A 250 REMARK 465 VAL A 251 REMARK 465 ARG A 252 REMARK 465 LEU A 253 REMARK 465 ALA A 254 REMARK 465 GLY A 255 REMARK 465 ASP A 256 REMARK 465 ARG A 257 REMARK 465 LEU A 258 REMARK 465 SER A 259 REMARK 465 ASN A 260 REMARK 465 THR A 261 REMARK 465 VAL A 262 REMARK 465 MET A 263 REMARK 465 TYR A 264 REMARK 465 PHE A 265 REMARK 465 ILE A 266 REMARK 465 SER A 267 REMARK 465 ASP A 268 REMARK 465 ARG A 269 REMARK 465 LEU A 270 REMARK 465 GLU A 271 REMARK 465 THR A 272 REMARK 465 GLN A 273 REMARK 465 ILE A 274 REMARK 465 ARG A 275 REMARK 465 GLY A 276 REMARK 465 ARG A 277 REMARK 465 ILE A 278 REMARK 465 THR A 279 REMARK 465 SER A 280 REMARK 465 PHE A 281 REMARK 465 LEU A 282 REMARK 465 ARG A 283 REMARK 465 GLU A 284 REMARK 465 LEU A 285 REMARK 465 ARG A 286 REMARK 465 GLU A 287 REMARK 465 ARG A 288 REMARK 465 ARG A 289 REMARK 465 VAL A 290 REMARK 465 ASP A 291 REMARK 465 ARG A 292 REMARK 465 SER A 293 REMARK 465 LEU A 294 REMARK 465 THR A 295 REMARK 465 SER A 296 REMARK 465 ASP A 297 REMARK 465 PRO A 298 REMARK 465 ALA A 299 REMARK 465 LEU A 300 REMARK 465 GLN A 301 REMARK 465 TYR A 302 REMARK 465 GLY A 358 REMARK 465 SER A 359 REMARK 465 GLU A 360 REMARK 465 GLY A 361 REMARK 465 THR A 362 REMARK 465 TRP A 388 REMARK 465 GLN A 389 REMARK 465 LEU A 390 REMARK 465 LYS A 504 REMARK 465 GLU A 505 REMARK 465 LYS A 506 REMARK 465 THR A 507 REMARK 465 LYS A 508 REMARK 465 ASN A 509 REMARK 465 LEU A 510 REMARK 465 THR A 511 REMARK 465 ARG A 512 REMARK 465 GLN A 513 REMARK 465 VAL A 514 REMARK 465 ASN A 515 REMARK 465 LYS A 516 REMARK 465 GLY A 517 REMARK 465 SER A 518 REMARK 465 LEU A 779 REMARK 465 GLY A 780 REMARK 465 VAL A 781 REMARK 465 TYR A 782 REMARK 465 LYS A 783 REMARK 465 ASP A 784 REMARK 465 THR A 830 REMARK 465 LYS A 831 REMARK 465 GLY A 832 REMARK 465 TRP A 833 REMARK 465 MET A 834 REMARK 465 MET A 835 REMARK 465 VAL A 912 REMARK 465 PHE A 913 REMARK 465 GLY A 914 REMARK 465 GLY A 915 REMARK 465 SER A 916 REMARK 465 SER A 917 REMARK 465 SER A 918 REMARK 465 GLY A 919 REMARK 465 THR A 920 REMARK 465 HIS A 921 REMARK 465 HIS A 922 REMARK 465 HIS A 923 REMARK 465 HIS A 924 REMARK 465 HIS A 925 REMARK 465 HIS A 926 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 303 CG CD OE1 OE2 REMARK 470 ARG A 304 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 308 CG CD OE1 OE2 REMARK 470 GLU A 316 CG CD OE1 OE2 REMARK 470 LYS A 355 CG CD CE NZ REMARK 470 LYS A 356 CG CD CE NZ REMARK 470 LYS A 357 CG CD CE NZ REMARK 470 ARG A 363 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 376 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 380 CG CD OE1 OE2 REMARK 470 ARG A 381 CG CD NE CZ NH1 NH2 REMARK 470 THR A 391 OG1 CG2 REMARK 470 LYS A 405 CG CD CE NZ REMARK 470 GLU A 433 CG CD OE1 OE2 REMARK 470 GLU A 444 CG CD OE1 OE2 REMARK 470 ARG A 453 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 479 CG CD OE1 NE2 REMARK 470 ARG A 486 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 503 CG CD CE NZ REMARK 470 ARG A 519 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 646 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 647 CG CD OE1 NE2 REMARK 470 ARG A 678 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 681 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 687 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 709 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 727 CG CD CE NZ REMARK 470 GLU A 734 CG CD OE1 OE2 REMARK 470 ARG A 750 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 774 CG CD CE NZ REMARK 470 ASP A 785 CG OD1 OD2 REMARK 470 MET A 786 CG SD CE REMARK 470 LYS A 827 CG CD CE NZ REMARK 470 SER A 836 OG REMARK 470 THR A 837 OG1 CG2 REMARK 470 GLU A 838 CG CD OE1 OE2 REMARK 470 ARG A 841 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 878 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 882 CG OD1 ND2 REMARK 470 GLU A 892 CG CD OE1 OE2 REMARK 470 GLN A 896 CG CD OE1 NE2 REMARK 470 LYS A 904 CG CD CE NZ REMARK 470 GLN A 908 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 345 -53.42 -122.57 REMARK 500 ALA A 354 -132.68 -122.65 REMARK 500 THR A 569 -72.99 -133.74 REMARK 500 GLN A 641 167.03 70.01 REMARK 500 ARG A 646 60.06 24.96 REMARK 500 GLN A 647 -70.82 -119.21 REMARK 500 SER A 714 -4.88 -159.03 REMARK 500 THR A 837 -47.52 -154.34 REMARK 500 GLU A 899 -126.83 -123.20 REMARK 500 MET A 910 -161.78 -120.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1483 DISTANCE = 6.09 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1001 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 574 OG REMARK 620 2 ASP A 698 OD1 161.2 REMARK 620 3 LYS A 699 O 86.9 95.0 REMARK 620 N 1 2 DBREF 8WIL A 55 926 PDB 8WIL 8WIL 55 926 SEQRES 1 A 872 MET GLU PRO THR LEU GLY ASP PRO THR GLU LEU GLY ARG SEQRES 2 A 872 GLN ALA LYS LYS GLU MET ASN ALA MET THR TYR GLU GLU SEQRES 3 A 872 PHE ASP ARG MET LYS PHE ARG GLY VAL VAL ALA GLU VAL SEQRES 4 A 872 TYR ALA GLY ASP LYS PRO SER LYS GLY TYR ASP LYS LEU SEQRES 5 A 872 ARG THR LEU LEU ASP LEU MET ASP ARG PRO LYS LEU GLY SEQRES 6 A 872 THR THR VAL ASP LEU CYS ALA GLY ARG GLY GLY TRP SER SEQRES 7 A 872 GLN LEU VAL GLY GLU LEU GLU GLY PRO GLY ASP ILE THR SEQRES 8 A 872 ALA VAL SER LEU TRP GLU ARG GLY ARG GLU GLU TRP MET SEQRES 9 A 872 ALA ASP PRO ALA ILE ARG ARG ILE ASN ALA ASN VAL LYS SEQRES 10 A 872 ASN VAL LYS PRO TRP ARG VAL ASP THR LEU LEU PHE ASP SEQRES 11 A 872 GLY GLY GLU THR PHE LYS ARG ASP GLN ASN ILE MET LYS SEQRES 12 A 872 GLU GLU SER TYR ASN ASP ALA LEU LEU ASP ALA VAL ASP SEQRES 13 A 872 ALA TRP MET MET GLN ALA THR PRO PRO THR ASN PHE VAL SEQRES 14 A 872 ILE LYS ILE GLN VAL PRO TYR THR GLN LYS ALA MET ARG SEQRES 15 A 872 LEU ILE GLU LYS TRP GLN VAL LYS THR LYS LYS GLY ARG SEQRES 16 A 872 LEU VAL ARG LEU ALA GLY ASP ARG LEU SER ASN THR VAL SEQRES 17 A 872 MET TYR PHE ILE SER ASP ARG LEU GLU THR GLN ILE ARG SEQRES 18 A 872 GLY ARG ILE THR SER PHE LEU ARG GLU LEU ARG GLU ARG SEQRES 19 A 872 ARG VAL ASP ARG SER LEU THR SER ASP PRO ALA LEU GLN SEQRES 20 A 872 TYR GLU ARG ILE THR PRO GLU TRP THR ALA GLU ALA VAL SEQRES 21 A 872 ILE GLU GLY CYS ALA PRO LEU THR PRO LEU ASN MET THR SEQRES 22 A 872 ARG SER ILE ALA GLU MET HIS MET GLU TYR PRO PRO LEU SEQRES 23 A 872 GLY ILE THR ARG PHE PHE LYS GLU LEU GLY TYR LYS ILE SEQRES 24 A 872 ALA LYS LYS LYS GLY SER GLU GLY THR ARG LYS ASN ARG SEQRES 25 A 872 PHE VAL GLY GLN LEU ILE GLU PRO LEU ARG ARG VAL LEU SEQRES 26 A 872 GLU ARG HIS HIS LEU PHE GLY ALA TRP GLN LEU THR SER SEQRES 27 A 872 THR THR PRO ARG ALA VAL PHE ASN MET PHE ARG SER LYS SEQRES 28 A 872 VAL ASP ARG ALA PRO VAL GLU LEU HIS SER HIS TYR PRO SEQRES 29 A 872 GLY LEU LYS LYS MET TYR ASP ILE LEU ALA ASP LEU TRP SEQRES 30 A 872 LEU GLU ARG TYR GLY SER MET LYS ARG LEU THR GLU GLU SEQRES 31 A 872 GLU MET ALA SER ALA ILE ASN ARG ARG GLY ALA MET GLY SEQRES 32 A 872 TYR GLN MET ASP ASN ARG ASN TYR GLY ASP LEU GLY ALA SEQRES 33 A 872 TYR TRP ASP SER GLY ASP TRP ARG GLN ASP VAL ASN THR SEQRES 34 A 872 PHE LYS ARG ALA LEU LEU SER GLY THR PRO THR HIS ALA SEQRES 35 A 872 VAL TYR ASN THR THR ALA LYS LYS GLU LYS THR LYS ASN SEQRES 36 A 872 LEU THR ARG GLN VAL ASN LYS GLY SER ARG ILE ILE GLN SEQRES 37 A 872 TYR LEU PRO ALA ASP ALA ARG LEU TYR GLU LEU LYS VAL SEQRES 38 A 872 LEU GLY GLY LEU HIS LYS TYR LEU GLU LYS CYS GLY TRP SEQRES 39 A 872 SER VAL ALA GLY GLN GLY LEU TYR LYS TYR GLY ASP ARG SEQRES 40 A 872 VAL LYS LYS SER MET ASP ALA THR GLY ALA ALA ILE SER SEQRES 41 A 872 GLU ASP VAL ALA GLY TRP ASP THR LYS ILE SER LYS GLY SEQRES 42 A 872 LEU LEU THR LEU GLU SER HIS MET PHE THR LYS LEU ALA SEQRES 43 A 872 GLU ASP GLU GLU MET ALA ARG GLU ILE HIS HIS LEU TYR SEQRES 44 A 872 ARG LEU TYR ALA ASP PRO HIS MET VAL VAL GLN ARG GLU SEQRES 45 A 872 ILE GLU GLY GLU VAL HIS ASP VAL LEU LEU ARG GLY ARG SEQRES 46 A 872 GLY GLN VAL SER SER GLY ARG GLN PRO THR TYR ALA ALA SEQRES 47 A 872 ASN THR ILE THR ASN PHE ILE THR THR THR TYR GLY MET SEQRES 48 A 872 ALA VAL THR LEU GLY ILE PRO GLU ALA ASP TRP PRO ARG SEQRES 49 A 872 LEU ILE ARG ASP LEU THR ASP GLU ARG GLY ASN ARG ARG SEQRES 50 A 872 LEU LEU VAL SER GLY ASP ASP LYS VAL LEU PHE LEU ARG SEQRES 51 A 872 GLY ASP GLU ALA ARG VAL TYR ALA SER SER ALA TYR ARG SEQRES 52 A 872 ILE SER ASN ASP MET GLY LEU VAL ARG LYS ASP MET ALA SEQRES 53 A 872 LEU GLU GLN GLU SER GLU ILE ILE VAL ASP VAL LYS GLU SEQRES 54 A 872 ILE SER PHE CYS SER HIS ARG TYR TRP PRO VAL LYS TYR SEQRES 55 A 872 GLY ASN GLU ILE HIS TYR MET PRO VAL ARG ASP VAL GLY SEQRES 56 A 872 GLU ILE PHE ALA LYS ALA THR MET ALA LEU GLY VAL TYR SEQRES 57 A 872 LYS ASP ASP MET THR GLN GLU ALA TRP ALA ARG VAL GLN SEQRES 58 A 872 GLY LEU ASN MET LEU VAL ASN TYR HIS HIS ILE PRO GLU SEQRES 59 A 872 CYS ARG MET LEU ALA LEU ALA ILE LEU SER VAL THR ARG SEQRES 60 A 872 ILE GLY LEU ASN LEU LYS GLY ILE THR LYS GLY TRP MET SEQRES 61 A 872 MET SER THR GLU TRP LEU ARG ASP ASP LEU ALA PRO ASP SEQRES 62 A 872 THR ILE HIS ALA LEU ILE THR GLU GLY ARG THR SER GLY SEQRES 63 A 872 TRP ASP GLN LEU GLY TYR VAL ASP PHE LYS ASP ARG LYS SEQRES 64 A 872 GLY ILE LEU LEU ARG PRO ASP THR ASN TYR LYS ASN TRP SEQRES 65 A 872 ARG ARG ASP LEU PRO GLU LYS VAL ARG GLN LEU ARG GLU SEQRES 66 A 872 ASP GLY GLN TYR LYS ASP TRP LEU GLN LYS MET ALA VAL SEQRES 67 A 872 PHE GLY GLY SER SER SER GLY THR HIS HIS HIS HIS HIS SEQRES 68 A 872 HIS HET MG A1001 1 HET GOL A1002 6 HET GOL A1003 6 HET GOL A1004 6 HET GOL A1005 6 HET GOL A1006 6 HET GOL A1007 6 HET PEG A1008 7 HET PEG A1009 7 HET PEG A1010 7 HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 MG MG 2+ FORMUL 3 GOL 6(C3 H8 O3) FORMUL 9 PEG 3(C4 H10 O3) FORMUL 12 HOH *383(H2 O) HELIX 1 AA1 MET A 326 GLU A 332 1 7 HELIX 2 AA2 ASN A 365 GLU A 373 1 9 HELIX 3 AA3 LEU A 375 HIS A 383 1 9 HELIX 4 AA4 THR A 394 VAL A 406 1 13 HELIX 5 AA5 HIS A 416 GLY A 436 1 21 HELIX 6 AA6 THR A 442 ILE A 450 1 9 HELIX 7 AA7 GLY A 457 ASN A 464 5 8 HELIX 8 AA8 ASP A 467 GLY A 475 1 9 HELIX 9 AA9 ASP A 476 GLY A 491 1 16 HELIX 10 AB1 PRO A 525 GLY A 537 1 13 HELIX 11 AB2 GLY A 538 GLU A 544 1 7 HELIX 12 AB3 GLY A 554 TYR A 556 5 3 HELIX 13 AB4 LYS A 557 ALA A 568 1 12 HELIX 14 AB5 GLY A 579 ILE A 584 1 6 HELIX 15 AB6 SER A 585 ALA A 600 1 16 HELIX 16 AB7 ASP A 602 ALA A 617 1 16 HELIX 17 AB8 GLN A 647 GLY A 670 1 24 HELIX 18 AB9 PRO A 672 ALA A 674 5 3 HELIX 19 AC1 ASP A 675 GLU A 686 1 12 HELIX 20 AC2 ARG A 704 ALA A 715 1 12 HELIX 21 AC3 ALA A 715 MET A 722 1 8 HELIX 22 AC4 ASP A 740 ILE A 744 5 5 HELIX 23 AC5 ASP A 767 MET A 777 1 11 HELIX 24 AC6 MET A 786 HIS A 804 1 19 HELIX 25 AC7 ILE A 806 THR A 820 1 15 HELIX 26 AC8 ALA A 845 GLU A 855 1 11 HELIX 27 AC9 GLY A 860 LEU A 864 5 5 HELIX 28 AD1 ASP A 868 ARG A 872 5 5 HELIX 29 AD2 ASP A 880 ARG A 898 1 19 HELIX 30 AD3 TRP A 906 MET A 910 5 5 SHEET 1 AA1 3 LYS A 347 ILE A 353 0 SHEET 2 AA1 3 GLU A 630 ARG A 637 -1 O LEU A 635 N LEU A 349 SHEET 3 AA1 3 HIS A 620 ILE A 627 -1 N ARG A 625 O HIS A 632 SHEET 1 AA2 2 ASN A 499 THR A 501 0 SHEET 2 AA2 2 ILE A 521 TYR A 523 -1 O TYR A 523 N ASN A 499 SHEET 1 AA3 3 ALA A 571 ILE A 573 0 SHEET 2 AA3 3 ASP A 698 LEU A 703 -1 O LEU A 701 N ILE A 573 SHEET 3 AA3 3 ARG A 690 SER A 695 -1 N ARG A 691 O PHE A 702 SHEET 1 AA4 2 ARG A 750 TYR A 756 0 SHEET 2 AA4 2 GLU A 759 VAL A 765 -1 O GLU A 759 N TYR A 756 LINK OG SER A 574 MG MG A1001 1555 1555 2.78 LINK OD1 ASP A 698 MG MG A1001 1555 1555 2.27 LINK O LYS A 699 MG MG A1001 1555 1555 2.78 CRYST1 61.519 89.185 121.768 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016255 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011213 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008212 0.00000