HEADER HYDROLASE 01-OCT-23 8WLW TITLE CRYSTAL STRUCTURE OF DELP123_MSD IN COMPLEX WITH 5-AZAURACIL COMPND MOL_ID: 1; COMPND 2 MOLECULE: CMP/DCMP DEAMINASE, ZINC-BINDING PROTEIN; COMPND 3 CHAIN: A, C, B, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOLICIBACTERIUM SMEGMATIS MC2 155; SOURCE 3 ORGANISM_TAXID: 246196; SOURCE 4 STRAIN: MC2 155; SOURCE 5 GENE: MSMEI_3493; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MYCOBACTERIAL DEAMINASE, S-TRIAZINE DEAMINASE, CDA, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.PORATHOOR,R.ANAND REVDAT 1 18-SEP-24 8WLW 0 JRNL AUTH S.PORATHOOR,R.ANAND JRNL TITL CRYSTAL STRUCTURE OF DELP123_MSD IN COMPLEX WITH 5-AZAURACIL JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0419 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 74.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 86239 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.984 REMARK 3 FREE R VALUE TEST SET COUNT : 4298 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.54 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.58 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6110 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.2420 REMARK 3 BIN FREE R VALUE SET COUNT : 299 REMARK 3 BIN FREE R VALUE : 0.2750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4719 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 307 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.64500 REMARK 3 B22 (A**2) : -0.78100 REMARK 3 B33 (A**2) : -0.47400 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.77500 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.080 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.082 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.059 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.641 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.953 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4902 ; 0.009 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 4461 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6691 ; 1.611 ; 1.669 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10202 ; 0.546 ; 1.590 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 626 ; 5.584 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 48 ; 7.346 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 679 ;13.523 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 745 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6026 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1166 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1004 ; 0.237 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 50 ; 0.310 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2448 ; 0.181 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 231 ; 0.155 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 12 ; 0.115 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2510 ; 1.638 ; 1.643 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2509 ; 1.619 ; 1.642 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3134 ; 2.351 ; 2.950 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3135 ; 2.351 ; 2.950 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2392 ; 2.801 ; 1.994 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2393 ; 2.801 ; 1.994 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3557 ; 4.293 ; 3.472 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3558 ; 4.292 ; 3.472 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8WLW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-OCT-23. REMARK 100 THE DEPOSITION ID IS D_1300041519. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-MAY-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 11.2C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 86243 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.538 REMARK 200 RESOLUTION RANGE LOW (A) : 74.660 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.6900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS PH 6.4, 20% PEG 1500, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 42.65000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG B 158 REMARK 465 ARG D 158 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 120 CG CD OE1 NE2 REMARK 470 GLU A 142 CG CD OE1 OE2 REMARK 470 GLU A 146 CG CD OE1 OE2 REMARK 470 ARG A 158 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 9 CG CD CE NZ REMARK 470 GLN C 120 CG CD OE1 NE2 REMARK 470 GLU C 142 CG CD OE1 OE2 REMARK 470 GLU C 146 CG CD OE1 OE2 REMARK 470 ARG C 158 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 72 CG OD1 OD2 REMARK 470 LYS D 9 CG CD CE NZ REMARK 470 GLN D 120 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C ARG C 158 O HOH C 303 1.62 REMARK 500 CAD WHC A 201 O HOH A 304 1.65 REMARK 500 CAD WHC C 201 O HOH C 304 1.67 REMARK 500 CAD WHC B 201 O HOH B 302 1.69 REMARK 500 CAD WHC D 201 O HOH D 302 1.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG D 74 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG D 100 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 74 0.10 SIDE CHAIN REMARK 500 ARG D 19 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 203 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 56 ND1 REMARK 620 2 CYS A 86 SG 103.1 REMARK 620 3 CYS A 89 SG 112.5 117.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 204 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 56 ND1 REMARK 620 2 CYS C 86 SG 103.8 REMARK 620 3 CYS C 89 SG 111.2 117.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 203 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 56 ND1 REMARK 620 2 CYS B 86 SG 104.6 REMARK 620 3 CYS B 89 SG 110.4 117.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 56 ND1 REMARK 620 2 CYS D 86 SG 105.0 REMARK 620 3 CYS D 89 SG 110.1 117.3 REMARK 620 N 1 2 DBREF 8WLW A 2 158 UNP I7G9Z0 I7G9Z0_MYCS2 2 159 DBREF 8WLW C 2 158 UNP I7G9Z0 I7G9Z0_MYCS2 2 159 DBREF 8WLW B 2 158 UNP I7G9Z0 I7G9Z0_MYCS2 2 159 DBREF 8WLW D 2 158 UNP I7G9Z0 I7G9Z0_MYCS2 2 159 SEQADV 8WLW A UNP I7G9Z0 PRO 123 DELETION SEQADV 8WLW C UNP I7G9Z0 PRO 123 DELETION SEQADV 8WLW B UNP I7G9Z0 PRO 123 DELETION SEQADV 8WLW D UNP I7G9Z0 PRO 123 DELETION SEQRES 1 A 157 ALA ILE SER ASP ALA ASP LEU LYS TYR LEU ARG ARG CYS SEQRES 2 A 157 VAL ASP LEU ALA ARG GLU ALA LEU ASP ASP GLY ASP GLU SEQRES 3 A 157 PRO PHE GLY SER VAL LEU VAL ASP HIS THR GLY THR THR SEQRES 4 A 157 LEU PHE GLU ASP ARG ASN ARG VAL LYS ASP GLY ASP ALA SEQRES 5 A 157 THR ALA HIS PRO GLU PHE ALA ILE ALA ARG TRP ALA ALA SEQRES 6 A 157 ARG HIS LEU THR PRO ASP ARG ARG ALA ARG ALA THR VAL SEQRES 7 A 157 TYR THR SER GLY GLU HIS CYS PRO MET CYS ALA ALA ALA SEQRES 8 A 157 HIS ALA TRP VAL GLY LEU GLY ARG ILE VAL TYR ALA THR SEQRES 9 A 157 SER SER ALA GLN LEU GLY GLY TRP LEU THR GLU TRP GLY SEQRES 10 A 157 ALA GLN ALA PRO VAL ALA THR LEU PRO ILE ASN THR VAL SEQRES 11 A 157 ALA PRO GLY VAL VAL VAL ASP GLY PRO ALA GLU GLU LEU SEQRES 12 A 157 ALA GLU THR MET HIS ASN LEU TYR ARG ALA LYS PHE GLY SEQRES 13 A 157 ARG SEQRES 1 C 157 ALA ILE SER ASP ALA ASP LEU LYS TYR LEU ARG ARG CYS SEQRES 2 C 157 VAL ASP LEU ALA ARG GLU ALA LEU ASP ASP GLY ASP GLU SEQRES 3 C 157 PRO PHE GLY SER VAL LEU VAL ASP HIS THR GLY THR THR SEQRES 4 C 157 LEU PHE GLU ASP ARG ASN ARG VAL LYS ASP GLY ASP ALA SEQRES 5 C 157 THR ALA HIS PRO GLU PHE ALA ILE ALA ARG TRP ALA ALA SEQRES 6 C 157 ARG HIS LEU THR PRO ASP ARG ARG ALA ARG ALA THR VAL SEQRES 7 C 157 TYR THR SER GLY GLU HIS CYS PRO MET CYS ALA ALA ALA SEQRES 8 C 157 HIS ALA TRP VAL GLY LEU GLY ARG ILE VAL TYR ALA THR SEQRES 9 C 157 SER SER ALA GLN LEU GLY GLY TRP LEU THR GLU TRP GLY SEQRES 10 C 157 ALA GLN ALA PRO VAL ALA THR LEU PRO ILE ASN THR VAL SEQRES 11 C 157 ALA PRO GLY VAL VAL VAL ASP GLY PRO ALA GLU GLU LEU SEQRES 12 C 157 ALA GLU THR MET HIS ASN LEU TYR ARG ALA LYS PHE GLY SEQRES 13 C 157 ARG SEQRES 1 B 157 ALA ILE SER ASP ALA ASP LEU LYS TYR LEU ARG ARG CYS SEQRES 2 B 157 VAL ASP LEU ALA ARG GLU ALA LEU ASP ASP GLY ASP GLU SEQRES 3 B 157 PRO PHE GLY SER VAL LEU VAL ASP HIS THR GLY THR THR SEQRES 4 B 157 LEU PHE GLU ASP ARG ASN ARG VAL LYS ASP GLY ASP ALA SEQRES 5 B 157 THR ALA HIS PRO GLU PHE ALA ILE ALA ARG TRP ALA ALA SEQRES 6 B 157 ARG HIS LEU THR PRO ASP ARG ARG ALA ARG ALA THR VAL SEQRES 7 B 157 TYR THR SER GLY GLU HIS CYS PRO MET CYS ALA ALA ALA SEQRES 8 B 157 HIS ALA TRP VAL GLY LEU GLY ARG ILE VAL TYR ALA THR SEQRES 9 B 157 SER SER ALA GLN LEU GLY GLY TRP LEU THR GLU TRP GLY SEQRES 10 B 157 ALA GLN ALA PRO VAL ALA THR LEU PRO ILE ASN THR VAL SEQRES 11 B 157 ALA PRO GLY VAL VAL VAL ASP GLY PRO ALA GLU GLU LEU SEQRES 12 B 157 ALA GLU THR MET HIS ASN LEU TYR ARG ALA LYS PHE GLY SEQRES 13 B 157 ARG SEQRES 1 D 157 ALA ILE SER ASP ALA ASP LEU LYS TYR LEU ARG ARG CYS SEQRES 2 D 157 VAL ASP LEU ALA ARG GLU ALA LEU ASP ASP GLY ASP GLU SEQRES 3 D 157 PRO PHE GLY SER VAL LEU VAL ASP HIS THR GLY THR THR SEQRES 4 D 157 LEU PHE GLU ASP ARG ASN ARG VAL LYS ASP GLY ASP ALA SEQRES 5 D 157 THR ALA HIS PRO GLU PHE ALA ILE ALA ARG TRP ALA ALA SEQRES 6 D 157 ARG HIS LEU THR PRO ASP ARG ARG ALA ARG ALA THR VAL SEQRES 7 D 157 TYR THR SER GLY GLU HIS CYS PRO MET CYS ALA ALA ALA SEQRES 8 D 157 HIS ALA TRP VAL GLY LEU GLY ARG ILE VAL TYR ALA THR SEQRES 9 D 157 SER SER ALA GLN LEU GLY GLY TRP LEU THR GLU TRP GLY SEQRES 10 D 157 ALA GLN ALA PRO VAL ALA THR LEU PRO ILE ASN THR VAL SEQRES 11 D 157 ALA PRO GLY VAL VAL VAL ASP GLY PRO ALA GLU GLU LEU SEQRES 12 D 157 ALA GLU THR MET HIS ASN LEU TYR ARG ALA LYS PHE GLY SEQRES 13 D 157 ARG HET WHC A 201 8 HET GOL A 202 6 HET ZN A 203 1 HET WHC C 201 8 HET GOL C 202 6 HET GOL C 203 6 HET ZN C 204 1 HET WHC B 201 8 HET GOL B 202 6 HET ZN B 203 1 HET WHC D 201 8 HET ZN D 202 1 HETNAM WHC 1~{H}-1,3,5-TRIAZINE-2,4-DIONE HETNAM GOL GLYCEROL HETNAM ZN ZINC ION HETSYN WHC 5-AZAURACIL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 WHC 4(C3 H3 N3 O2) FORMUL 6 GOL 4(C3 H8 O3) FORMUL 7 ZN 4(ZN 2+) FORMUL 17 HOH *307(H2 O) HELIX 1 AA1 SER A 4 ASP A 24 1 21 HELIX 2 AA2 ARG A 47 GLY A 51 5 5 HELIX 3 AA3 HIS A 56 LEU A 69 1 14 HELIX 4 AA4 THR A 70 ALA A 77 1 8 HELIX 5 AA5 CYS A 86 GLY A 97 1 12 HELIX 6 AA6 SER A 106 TRP A 117 1 12 HELIX 7 AA7 PRO A 127 ALA A 132 1 6 HELIX 8 AA8 ALA A 141 GLU A 143 5 3 HELIX 9 AA9 LEU A 144 GLY A 157 1 14 HELIX 10 AB1 SER C 4 ASP C 24 1 21 HELIX 11 AB2 ARG C 47 GLY C 51 5 5 HELIX 12 AB3 HIS C 56 LEU C 69 1 14 HELIX 13 AB4 THR C 70 ALA C 77 1 8 HELIX 14 AB5 CYS C 86 GLY C 97 1 12 HELIX 15 AB6 SER C 106 TRP C 117 1 12 HELIX 16 AB7 PRO C 127 ALA C 132 1 6 HELIX 17 AB8 ALA C 141 GLU C 143 5 3 HELIX 18 AB9 LEU C 144 GLY C 157 1 14 HELIX 19 AC1 SER B 4 ASP B 24 1 21 HELIX 20 AC2 ARG B 47 GLY B 51 5 5 HELIX 21 AC3 HIS B 56 LEU B 69 1 14 HELIX 22 AC4 THR B 70 ALA B 77 1 8 HELIX 23 AC5 CYS B 86 GLY B 97 1 12 HELIX 24 AC6 SER B 106 GLY B 118 1 13 HELIX 25 AC7 PRO B 127 ALA B 132 1 6 HELIX 26 AC8 ALA B 141 GLU B 143 5 3 HELIX 27 AC9 LEU B 144 GLY B 157 1 14 HELIX 28 AD1 SER D 4 ASP D 24 1 21 HELIX 29 AD2 ARG D 47 GLY D 51 5 5 HELIX 30 AD3 HIS D 56 LEU D 69 1 14 HELIX 31 AD4 THR D 70 ALA D 77 1 8 HELIX 32 AD5 CYS D 86 GLY D 97 1 12 HELIX 33 AD6 SER D 106 TRP D 117 1 12 HELIX 34 AD7 PRO D 127 ALA D 132 1 6 HELIX 35 AD8 ALA D 141 GLU D 143 5 3 HELIX 36 AD9 LEU D 144 GLY D 157 1 14 SHEET 1 AA1 5 THR A 40 ARG A 45 0 SHEET 2 AA1 5 GLY A 30 VAL A 34 -1 N LEU A 33 O PHE A 42 SHEET 3 AA1 5 THR A 78 GLY A 83 -1 O THR A 78 N VAL A 34 SHEET 4 AA1 5 ARG A 100 THR A 105 1 O ARG A 100 N VAL A 79 SHEET 5 AA1 5 VAL A 137 ASP A 138 1 O ASP A 138 N TYR A 103 SHEET 1 AA2 5 THR C 40 ARG C 45 0 SHEET 2 AA2 5 GLY C 30 VAL C 34 -1 N LEU C 33 O LEU C 41 SHEET 3 AA2 5 THR C 78 GLY C 83 -1 O THR C 78 N VAL C 34 SHEET 4 AA2 5 ARG C 100 THR C 105 1 O ARG C 100 N VAL C 79 SHEET 5 AA2 5 VAL C 137 ASP C 138 1 O ASP C 138 N ILE C 101 SHEET 1 AA3 5 THR B 40 ARG B 45 0 SHEET 2 AA3 5 GLY B 30 VAL B 34 -1 N LEU B 33 O PHE B 42 SHEET 3 AA3 5 THR B 78 GLY B 83 -1 O THR B 78 N VAL B 34 SHEET 4 AA3 5 ARG B 100 THR B 105 1 O ARG B 100 N VAL B 79 SHEET 5 AA3 5 VAL B 137 ASP B 138 1 O ASP B 138 N ILE B 101 SHEET 1 AA4 5 THR D 40 ARG D 45 0 SHEET 2 AA4 5 GLY D 30 VAL D 34 -1 N LEU D 33 O PHE D 42 SHEET 3 AA4 5 THR D 78 GLY D 83 -1 O THR D 78 N VAL D 34 SHEET 4 AA4 5 ARG D 100 THR D 105 1 O ARG D 100 N VAL D 79 SHEET 5 AA4 5 VAL D 137 ASP D 138 1 O ASP D 138 N ILE D 101 LINK ND1 HIS A 56 ZN ZN A 203 1555 1555 2.06 LINK SG CYS A 86 ZN ZN A 203 1555 1555 2.36 LINK SG CYS A 89 ZN ZN A 203 1555 1555 2.25 LINK ND1 HIS C 56 ZN ZN C 204 1555 1555 2.07 LINK SG CYS C 86 ZN ZN C 204 1555 1555 2.33 LINK SG CYS C 89 ZN ZN C 204 1555 1555 2.26 LINK ND1 HIS B 56 ZN ZN B 203 1555 1555 2.07 LINK SG CYS B 86 ZN ZN B 203 1555 1555 2.35 LINK SG CYS B 89 ZN ZN B 203 1555 1555 2.28 LINK ND1 HIS D 56 ZN ZN D 202 1555 1555 2.05 LINK SG CYS D 86 ZN ZN D 202 1555 1555 2.33 LINK SG CYS D 89 ZN ZN D 202 1555 1555 2.29 CISPEP 1 GLY A 139 PRO A 140 0 1.20 CISPEP 2 GLY C 139 PRO C 140 0 -2.15 CISPEP 3 GLY B 139 PRO B 140 0 1.93 CISPEP 4 GLY D 139 PRO D 140 0 -0.73 CRYST1 46.750 85.300 76.460 90.00 102.49 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021390 0.000000 0.004739 0.00000 SCALE2 0.000000 0.011723 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013396 0.00000