HEADER HYDROLASE 01-OCT-23 8WLX TITLE CRYSTAL STRUCTURE OF P123A_MSD COMPND MOL_ID: 1; COMPND 2 MOLECULE: CMP/DCMP DEAMINASE, ZINC-BINDING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOLICIBACTERIUM SMEGMATIS MC2 155; SOURCE 3 ORGANISM_TAXID: 246196; SOURCE 4 STRAIN: MC2 155; SOURCE 5 GENE: MSMEI_3493; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MYCOBACTERIAL DEAMINASE, S-TRIAZINE DEAMINASE, CDA, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.PORATHOOR,R.ANAND REVDAT 1 18-SEP-24 8WLX 0 JRNL AUTH S.PORATHOOR,R.ANAND JRNL TITL CRYSTAL STRUCTURE OF P123A_MSD JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.56 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0419 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.56 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 53016 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.824 REMARK 3 FREE R VALUE TEST SET COUNT : 967 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.56 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.60 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3769 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.2670 REMARK 3 BIN FREE R VALUE SET COUNT : 69 REMARK 3 BIN FREE R VALUE : 0.2840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2390 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 245 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.00600 REMARK 3 B22 (A**2) : -0.02300 REMARK 3 B33 (A**2) : 0.02900 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.069 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.070 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.057 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.670 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.966 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2556 ; 0.010 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 2359 ; 0.002 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3484 ; 1.746 ; 1.812 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5400 ; 0.664 ; 1.756 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 330 ; 5.809 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 28 ; 9.213 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 356 ;11.759 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 391 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3139 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 609 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 514 ; 0.220 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 34 ; 0.155 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1230 ; 0.181 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 178 ; 0.147 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 8 ; 0.116 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1296 ; 1.653 ; 1.778 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1294 ; 1.632 ; 1.775 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1619 ; 2.460 ; 3.188 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1620 ; 2.465 ; 3.190 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1260 ; 3.063 ; 2.182 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1261 ; 3.062 ; 2.184 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1860 ; 4.518 ; 3.792 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1861 ; 4.517 ; 3.794 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8WLX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-OCT-23. REMARK 100 THE DEPOSITION ID IS D_1300041524. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-NOV-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 11.2C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53097 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.560 REMARK 200 RESOLUTION RANGE LOW (A) : 19.763 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.7900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.56 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.60 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES PH 6.4, 0.2M MG-ACETATE REMARK 280 TETRAHYDRATE, 20% PEG 8000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 31.83000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.28000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.83000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.28000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -102.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 9 CG CD CE NZ REMARK 470 GLN A 120 CG CD OE1 NE2 REMARK 470 GLU A 143 CG CD OE1 OE2 REMARK 470 GLU B 143 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 HIS B 68 O HOH B 301 2.05 REMARK 500 O HOH A 327 O HOH A 392 2.18 REMARK 500 O HOH B 301 O HOH B 403 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 301 O HOH B 343 2665 2.03 REMARK 500 O HOH A 332 O HOH B 301 4556 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 74 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG A 159 CD - NE - CZ ANGL. DEV. = 9.5 DEGREES REMARK 500 ARG B 74 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 67 0.10 SIDE CHAIN REMARK 500 ARG A 74 0.13 SIDE CHAIN REMARK 500 ARG B 74 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLY A 118 -12.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 204 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 56 ND1 REMARK 620 2 CYS A 86 SG 107.3 REMARK 620 3 CYS A 89 SG 110.1 119.1 REMARK 620 4 HOH A 311 O 105.0 105.1 109.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 208 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 56 ND1 REMARK 620 2 CYS B 86 SG 107.9 REMARK 620 3 CYS B 89 SG 111.5 119.9 REMARK 620 4 HOH B 321 O 105.2 103.0 108.1 REMARK 620 N 1 2 3 DBREF 8WLX A 2 159 UNP I7G9Z0 I7G9Z0_MYCS2 2 159 DBREF 8WLX B 2 159 UNP I7G9Z0 I7G9Z0_MYCS2 2 159 SEQADV 8WLX ALA A 123 UNP I7G9Z0 PRO 123 CONFLICT SEQADV 8WLX ALA B 123 UNP I7G9Z0 PRO 123 CONFLICT SEQRES 1 A 158 ALA ILE SER ASP ALA ASP LEU LYS TYR LEU ARG ARG CYS SEQRES 2 A 158 VAL ASP LEU ALA ARG GLU ALA LEU ASP ASP GLY ASP GLU SEQRES 3 A 158 PRO PHE GLY SER VAL LEU VAL ASP HIS THR GLY THR THR SEQRES 4 A 158 LEU PHE GLU ASP ARG ASN ARG VAL LYS ASP GLY ASP ALA SEQRES 5 A 158 THR ALA HIS PRO GLU PHE ALA ILE ALA ARG TRP ALA ALA SEQRES 6 A 158 ARG HIS LEU THR PRO ASP ARG ARG ALA ARG ALA THR VAL SEQRES 7 A 158 TYR THR SER GLY GLU HIS CYS PRO MET CYS ALA ALA ALA SEQRES 8 A 158 HIS ALA TRP VAL GLY LEU GLY ARG ILE VAL TYR ALA THR SEQRES 9 A 158 SER SER ALA GLN LEU GLY GLY TRP LEU THR GLU TRP GLY SEQRES 10 A 158 ALA GLN ALA PRO ALA VAL ALA THR LEU PRO ILE ASN THR SEQRES 11 A 158 VAL ALA PRO GLY VAL VAL VAL ASP GLY PRO ALA GLU GLU SEQRES 12 A 158 LEU ALA GLU THR MET HIS ASN LEU TYR ARG ALA LYS PHE SEQRES 13 A 158 GLY ARG SEQRES 1 B 158 ALA ILE SER ASP ALA ASP LEU LYS TYR LEU ARG ARG CYS SEQRES 2 B 158 VAL ASP LEU ALA ARG GLU ALA LEU ASP ASP GLY ASP GLU SEQRES 3 B 158 PRO PHE GLY SER VAL LEU VAL ASP HIS THR GLY THR THR SEQRES 4 B 158 LEU PHE GLU ASP ARG ASN ARG VAL LYS ASP GLY ASP ALA SEQRES 5 B 158 THR ALA HIS PRO GLU PHE ALA ILE ALA ARG TRP ALA ALA SEQRES 6 B 158 ARG HIS LEU THR PRO ASP ARG ARG ALA ARG ALA THR VAL SEQRES 7 B 158 TYR THR SER GLY GLU HIS CYS PRO MET CYS ALA ALA ALA SEQRES 8 B 158 HIS ALA TRP VAL GLY LEU GLY ARG ILE VAL TYR ALA THR SEQRES 9 B 158 SER SER ALA GLN LEU GLY GLY TRP LEU THR GLU TRP GLY SEQRES 10 B 158 ALA GLN ALA PRO ALA VAL ALA THR LEU PRO ILE ASN THR SEQRES 11 B 158 VAL ALA PRO GLY VAL VAL VAL ASP GLY PRO ALA GLU GLU SEQRES 12 B 158 LEU ALA GLU THR MET HIS ASN LEU TYR ARG ALA LYS PHE SEQRES 13 B 158 GLY ARG HET GOL A 201 6 HET GOL A 202 6 HET GOL A 203 6 HET ZN A 204 1 HET ACT B 201 4 HET GOL B 202 6 HET GOL B 203 6 HET GOL B 204 6 HET GOL B 205 6 HET GOL B 206 6 HET ACT B 207 4 HET ZN B 208 1 HETNAM GOL GLYCEROL HETNAM ZN ZINC ION HETNAM ACT ACETATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 8(C3 H8 O3) FORMUL 6 ZN 2(ZN 2+) FORMUL 7 ACT 2(C2 H3 O2 1-) FORMUL 15 HOH *245(H2 O) HELIX 1 AA1 SER A 4 ASP A 24 1 21 HELIX 2 AA2 ARG A 47 GLY A 51 5 5 HELIX 3 AA3 HIS A 56 LEU A 69 1 14 HELIX 4 AA4 THR A 70 ALA A 77 1 8 HELIX 5 AA5 CYS A 86 GLY A 97 1 12 HELIX 6 AA6 SER A 106 TRP A 117 1 12 HELIX 7 AA7 PRO A 128 ALA A 133 1 6 HELIX 8 AA8 ALA A 142 GLU A 144 5 3 HELIX 9 AA9 LEU A 145 GLY A 158 1 14 HELIX 10 AB1 SER B 4 ASP B 24 1 21 HELIX 11 AB2 ARG B 47 GLY B 51 5 5 HELIX 12 AB3 HIS B 56 LEU B 69 1 14 HELIX 13 AB4 THR B 70 ALA B 77 1 8 HELIX 14 AB5 CYS B 86 GLY B 97 1 12 HELIX 15 AB6 SER B 106 TRP B 117 1 12 HELIX 16 AB7 PRO B 128 ALA B 133 1 6 HELIX 17 AB8 ALA B 142 GLU B 144 5 3 HELIX 18 AB9 LEU B 145 GLY B 158 1 14 SHEET 1 AA1 5 THR A 40 ARG A 45 0 SHEET 2 AA1 5 GLY A 30 VAL A 34 -1 N LEU A 33 O PHE A 42 SHEET 3 AA1 5 THR A 78 GLY A 83 -1 O TYR A 80 N VAL A 32 SHEET 4 AA1 5 ARG A 100 THR A 105 1 O ARG A 100 N VAL A 79 SHEET 5 AA1 5 VAL A 138 ASP A 139 1 O ASP A 139 N ILE A 101 SHEET 1 AA2 5 THR B 40 ARG B 45 0 SHEET 2 AA2 5 GLY B 30 VAL B 34 -1 N LEU B 33 O PHE B 42 SHEET 3 AA2 5 THR B 78 GLY B 83 -1 O THR B 78 N VAL B 34 SHEET 4 AA2 5 ARG B 100 THR B 105 1 O ARG B 100 N VAL B 79 SHEET 5 AA2 5 VAL B 138 ASP B 139 1 O ASP B 139 N ILE B 101 LINK ND1 HIS A 56 ZN ZN A 204 1555 1555 2.04 LINK SG CYS A 86 ZN ZN A 204 1555 1555 2.33 LINK SG CYS A 89 ZN ZN A 204 1555 1555 2.27 LINK ZN ZN A 204 O HOH A 311 1555 1555 1.92 LINK ND1 HIS B 56 ZN ZN B 208 1555 1555 2.03 LINK SG CYS B 86 ZN ZN B 208 1555 1555 2.30 LINK SG CYS B 89 ZN ZN B 208 1555 1555 2.26 LINK ZN ZN B 208 O HOH B 321 1555 1555 1.99 CISPEP 1 GLY A 140 PRO A 141 0 -0.77 CISPEP 2 GLY B 140 PRO B 141 0 1.19 CRYST1 63.660 108.560 53.190 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015708 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009211 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018801 0.00000