HEADER SIGNALING PROTEIN 01-OCT-23 8WM0 TITLE CRYSTAL STRUCTURE OF TNIK-THIOPEPTIDE WTP3 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRAF2 AND NCK-INTERACTING PROTEIN KINASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.11.1; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: THIOPEPTIDE WTP3; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TNIK, KIAA0551; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS RIPP, THIOPEPTIDE, KINASE INHIBITION, COMPLEX, SIGNALING PROTEIN, KEYWDS 2 SIGNALING PROTEIN-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.HAMADA,S.KOBAYASHI,A.A.VINOGRADOV,Y.ZHANG,Y.GOTO,H.SUGA,K.OGATA, AUTHOR 2 T.SENGOKU REVDAT 1 27-MAR-24 8WM0 0 JRNL AUTH A.A.VINOGRADOV,Y.ZHANG,K.HAMADA,S.KOBAYASHI,K.OGATA, JRNL AUTH 2 T.SENGOKU,Y.GOTO,H.SUGA JRNL TITL A COMPACT REPROGRAMMED GENETIC CODE FOR DE NOVO DISCOVERY OF JRNL TITL 2 PROTEOLYTICALLY STABLE THIOPEPTIDES. JRNL REF J.AM.CHEM.SOC. 2024 JRNL REFN ESSN 1520-5126 JRNL PMID 38491946 JRNL DOI 10.1021/JACS.3C12037 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 8834 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NONE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.962 REMARK 3 FREE R VALUE TEST SET COUNT : 880 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 583 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3580 REMARK 3 BIN FREE R VALUE SET COUNT : 63 REMARK 3 BIN FREE R VALUE : 0.3740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2461 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 19 REMARK 3 SOLVENT ATOMS : 1 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 86.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.10900 REMARK 3 B22 (A**2) : 0.10900 REMARK 3 B33 (A**2) : -0.35500 REMARK 3 B12 (A**2) : 0.05500 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.462 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.487 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 57.411 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.941 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.904 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2549 ; 0.003 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2314 ; 0.001 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3477 ; 1.250 ; 1.666 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5301 ; 1.040 ; 1.599 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 310 ; 6.485 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 125 ;35.207 ;22.480 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 394 ;18.623 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;17.630 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 328 ; 0.041 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2921 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 590 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 565 ; 0.191 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 47 ; 0.189 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1211 ; 0.157 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 55 ; 0.111 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1251 ; 0.595 ; 4.972 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1247 ; 0.585 ; 4.968 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1561 ; 1.029 ; 7.455 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1559 ; 1.019 ; 7.452 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1298 ; 0.505 ; 5.089 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1299 ; 0.504 ; 5.091 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1915 ; 0.895 ; 7.621 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1916 ; 0.895 ; 7.623 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 12 A 63 REMARK 3 ORIGIN FOR THE GROUP (A): -5.8740 -2.2080 29.1327 REMARK 3 T TENSOR REMARK 3 T11: 0.2987 T22: 0.3903 REMARK 3 T33: 0.4502 T12: 0.0460 REMARK 3 T13: 0.0845 T23: -0.2346 REMARK 3 L TENSOR REMARK 3 L11: 5.0828 L22: 3.0265 REMARK 3 L33: 8.6918 L12: -0.6956 REMARK 3 L13: -0.7961 L23: -0.3993 REMARK 3 S TENSOR REMARK 3 S11: -0.2959 S12: 0.4352 S13: 0.0397 REMARK 3 S21: -0.2313 S22: 0.0001 S23: 0.0325 REMARK 3 S31: 1.1145 S32: -0.4341 S33: 0.2957 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 64 A 126 REMARK 3 ORIGIN FOR THE GROUP (A): -12.6666 1.9746 24.8385 REMARK 3 T TENSOR REMARK 3 T11: 0.1517 T22: 0.6263 REMARK 3 T33: 0.3809 T12: -0.1050 REMARK 3 T13: 0.1839 T23: -0.3641 REMARK 3 L TENSOR REMARK 3 L11: 6.6252 L22: 2.3518 REMARK 3 L33: 2.4766 L12: 0.1722 REMARK 3 L13: 3.9688 L23: 0.5167 REMARK 3 S TENSOR REMARK 3 S11: -0.0399 S12: 0.0534 S13: 0.2293 REMARK 3 S21: -0.0466 S22: -0.1235 S23: -0.3002 REMARK 3 S31: 0.0304 S32: -0.0454 S33: 0.1634 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 127 A 310 REMARK 3 ORIGIN FOR THE GROUP (A): -26.9435 8.2778 13.3388 REMARK 3 T TENSOR REMARK 3 T11: 0.1225 T22: 0.2881 REMARK 3 T33: 0.5074 T12: 0.0881 REMARK 3 T13: -0.1026 T23: -0.3684 REMARK 3 L TENSOR REMARK 3 L11: 5.7088 L22: 5.2022 REMARK 3 L33: 4.5205 L12: 1.3353 REMARK 3 L13: 0.6435 L23: 2.1586 REMARK 3 S TENSOR REMARK 3 S11: -0.3825 S12: -0.5003 S13: 0.9424 REMARK 3 S21: -0.4503 S22: -0.4995 S23: 0.7765 REMARK 3 S31: -0.6146 S32: -0.8408 S33: 0.8820 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 14 REMARK 3 ORIGIN FOR THE GROUP (A): -9.7872 -0.6260 4.5575 REMARK 3 T TENSOR REMARK 3 T11: 0.3343 T22: 0.3527 REMARK 3 T33: 0.4588 T12: 0.0014 REMARK 3 T13: 0.0302 T23: -0.2230 REMARK 3 L TENSOR REMARK 3 L11: 3.9521 L22: 3.5761 REMARK 3 L33: 11.1993 L12: 1.5463 REMARK 3 L13: -0.2727 L23: -5.8334 REMARK 3 S TENSOR REMARK 3 S11: -0.1862 S12: -0.7659 S13: -0.2972 REMARK 3 S21: -0.1610 S22: -0.3047 S23: -0.4750 REMARK 3 S31: 0.2555 S32: 0.2143 S33: 0.4909 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8WM0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-OCT-23. REMARK 100 THE DEPOSITION ID IS D_1300040408. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-23 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8896 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 46.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 62.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7XZQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 13% TACSIMATE PH6.0, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 146.78000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 73.39000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 110.08500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 36.69500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 183.47500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 9 REMARK 465 PRO A 10 REMARK 465 ASP A 11 REMARK 465 LYS A 311 REMARK 465 LYS A 312 REMARK 465 ARG A 313 REMARK 465 GLY A 314 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 12 CG CD OE1 OE2 REMARK 470 ILE A 13 CG1 CG2 CD1 REMARK 470 ASP A 14 CG OD1 OD2 REMARK 470 GLU A 63 CG CD OE1 OE2 REMARK 470 GLU A 65 CG CD OE1 OE2 REMARK 470 LYS A 67 CG CD CE NZ REMARK 470 LYS A 126 CG CD CE NZ REMARK 470 ARG A 139 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 168 CG CD CE NZ REMARK 470 LYS A 213 CG CD CE NZ REMARK 470 LYS A 254 CG CD CE NZ REMARK 470 LYS A 257 CG CD CE NZ REMARK 470 LYS A 260 CG CD CE NZ REMARK 470 LYS A 261 CG CD CE NZ REMARK 470 ARG A 290 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 296 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 297 CG CD OE1 NE2 REMARK 470 LYS A 303 CG CD CE NZ REMARK 470 LYS A 310 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 24 -62.32 -106.97 REMARK 500 VAL A 28 -59.93 -126.25 REMARK 500 VAL A 31 -33.56 -142.53 REMARK 500 GLU A 63 17.84 -64.99 REMARK 500 PRO A 94 173.63 -53.64 REMARK 500 ARG A 152 -3.30 76.19 REMARK 500 ASP A 153 58.32 -148.42 REMARK 500 ALA A 165 34.35 70.80 REMARK 500 ASP A 171 84.66 73.28 REMARK 500 ASN A 186 24.51 -141.18 REMARK 500 ALA A 250 126.85 -37.85 REMARK 500 ILE A 289 -64.21 -100.58 REMARK 500 ASN A 294 141.20 174.53 REMARK 500 REMARK 500 REMARK: NULL DBREF 8WM0 A 11 314 UNP Q9UKE5 TNIK_HUMAN 11 314 DBREF 8WM0 B 2 15 PDB 8WM0 8WM0 2 15 SEQADV 8WM0 GLY A 9 UNP Q9UKE5 EXPRESSION TAG SEQADV 8WM0 PRO A 10 UNP Q9UKE5 EXPRESSION TAG SEQRES 1 A 306 GLY PRO ASP GLU ILE ASP LEU SER ALA LEU ARG ASP PRO SEQRES 2 A 306 ALA GLY ILE PHE GLU LEU VAL GLU LEU VAL GLY ASN GLY SEQRES 3 A 306 THR TYR GLY GLN VAL TYR LYS GLY ARG HIS VAL LYS THR SEQRES 4 A 306 GLY GLN LEU ALA ALA ILE LYS VAL MET ASP VAL THR GLY SEQRES 5 A 306 ASP GLU GLU GLU GLU ILE LYS GLN GLU ILE ASN MET LEU SEQRES 6 A 306 LYS LYS TYR SER HIS HIS ARG ASN ILE ALA THR TYR TYR SEQRES 7 A 306 GLY ALA PHE ILE LYS LYS ASN PRO PRO GLY MET ASP ASP SEQRES 8 A 306 GLN LEU TRP LEU VAL MET GLU PHE CYS GLY ALA GLY SER SEQRES 9 A 306 VAL THR ASP LEU ILE LYS ASN THR LYS GLY ASN THR LEU SEQRES 10 A 306 LYS GLU GLU TRP ILE ALA TYR ILE CYS ARG GLU ILE LEU SEQRES 11 A 306 ARG GLY LEU SER HIS LEU HIS GLN HIS LYS VAL ILE HIS SEQRES 12 A 306 ARG ASP ILE LYS GLY GLN ASN VAL LEU LEU THR GLU ASN SEQRES 13 A 306 ALA GLU VAL LYS LEU VAL ASP PHE GLY VAL SER ALA GLN SEQRES 14 A 306 LEU ASP ARG TPO VAL GLY ARG ARG ASN TPO PHE ILE GLY SEQRES 15 A 306 THR PRO TYR TRP MET ALA PRO GLU VAL ILE ALA CYS ASP SEQRES 16 A 306 GLU ASN PRO ASP ALA THR TYR ASP PHE LYS SER ASP LEU SEQRES 17 A 306 TRP SER LEU GLY ILE THR ALA ILE GLU MET ALA GLU GLY SEQRES 18 A 306 ALA PRO PRO LEU CYS ASP MET HIS PRO MET ARG ALA LEU SEQRES 19 A 306 PHE LEU ILE PRO ARG ASN PRO ALA PRO ARG LEU LYS SER SEQRES 20 A 306 LYS LYS TRP SER LYS LYS PHE GLN SER PHE ILE GLU SER SEQRES 21 A 306 CYS LEU VAL LYS ASN HIS SER GLN ARG PRO ALA THR GLU SEQRES 22 A 306 GLN LEU MET LYS HIS PRO PHE ILE ARG ASP GLN PRO ASN SEQRES 23 A 306 GLU ARG GLN VAL ARG ILE GLN LEU LYS ASP HIS ILE ASP SEQRES 24 A 306 ARG THR LYS LYS LYS ARG GLY SEQRES 1 B 14 TRP TRP WEH SAR DHA SAR WET DHA DHA THR WGB DHA GLY SEQRES 2 B 14 WFZ MODRES 8WM0 TPO A 181 THR MODIFIED RESIDUE MODRES 8WM0 TPO A 187 THR MODIFIED RESIDUE HET TPO A 181 11 HET TPO A 187 11 HET WEH B 4 10 HET SAR B 5 5 HET DHA B 6 5 HET SAR B 7 5 HET WET B 8 13 HET DHA B 9 5 HET DHA B 10 5 HET WGB B 12 15 HET DHA B 13 5 HET WFZ B 15 25 HET ADN A 401 19 HETNAM TPO PHOSPHOTHREONINE HETNAM WEH L-HOMOGLUTAMINE HETNAM SAR SARCOSINE HETNAM DHA 2-AMINO-ACRYLIC ACID HETNAM WET L-7-HYDROXY-1,2,3,4-TETRAHYDROISOQUINOLINE-3-CARBOXYLIC HETNAM 2 WET ACID HETNAM WGB (2~{S})-2-(METHYLAMINO)-3-[4-[OXIDANYL(OXIDANYLIDENE)- HETNAM 2 WGB $L^{4}-AZANYL]PHENYL]PROPANOIC ACID HETNAM WFZ 2-[2-(1-AZANYLETHENYL)-1,3-THIAZOL-4-YL]-6-(4- HETNAM 2 WFZ METHOXYCARBONYL-1,3-THIAZOL-2-YL)PYRIDINE-3-CARBOXYLIC HETNAM 3 WFZ ACID HETNAM ADN ADENOSINE HETSYN TPO PHOSPHONOTHREONINE HETSYN WEH (2~{S})-2,6-BIS(AZANYL)-6-OXIDANYLIDENE-HEXANOIC ACID HETSYN DHA 2,3-DIDEHYDROALANINE HETSYN WET (3~{S})-7-OXIDANYL-1,2,3,4-TETRAHYDROISOQUINOLINE-3- HETSYN 2 WET CARBOXYLIC ACID FORMUL 1 TPO 2(C4 H10 N O6 P) FORMUL 2 WEH C6 H12 N2 O3 FORMUL 2 SAR 2(C3 H7 N O2) FORMUL 2 DHA 4(C3 H5 N O2) FORMUL 2 WET C10 H11 N O3 FORMUL 2 WGB C10 H13 N2 O4 1- FORMUL 2 WFZ C16 H12 N4 O4 S2 FORMUL 3 ADN C10 H13 N5 O4 FORMUL 4 HOH *(H2 O) HELIX 1 AA1 GLU A 64 SER A 77 1 14 HELIX 2 AA2 VAL A 113 ASN A 119 1 7 HELIX 3 AA3 LYS A 126 HIS A 147 1 22 HELIX 4 AA4 LYS A 155 GLN A 157 5 3 HELIX 5 AA5 THR A 191 MET A 195 5 5 HELIX 6 AA6 ALA A 196 ALA A 201 1 6 HELIX 7 AA7 CYS A 202 GLU A 204 5 3 HELIX 8 AA8 PHE A 212 GLY A 229 1 18 HELIX 9 AA9 HIS A 237 ASN A 248 1 12 HELIX 10 AB1 SER A 259 LEU A 270 1 12 HELIX 11 AB2 ALA A 279 MET A 284 1 6 HELIX 12 AB3 HIS A 286 ASP A 291 1 6 HELIX 13 AB4 ASN A 294 THR A 309 1 16 SHEET 1 AA1 3 PHE A 25 GLU A 26 0 SHEET 2 AA1 3 VAL A 39 HIS A 44 -1 O ARG A 43 N GLU A 26 SHEET 3 AA1 3 LEU A 30 GLY A 32 -1 N VAL A 31 O VAL A 39 SHEET 1 AA2 5 PHE A 25 GLU A 26 0 SHEET 2 AA2 5 VAL A 39 HIS A 44 -1 O ARG A 43 N GLU A 26 SHEET 3 AA2 5 LEU A 50 VAL A 55 -1 O ILE A 53 N TYR A 40 SHEET 4 AA2 5 GLN A 100 MET A 105 -1 O LEU A 103 N LYS A 54 SHEET 5 AA2 5 TYR A 85 LYS A 91 -1 N GLY A 87 O VAL A 104 SHEET 1 AA3 3 GLY A 111 SER A 112 0 SHEET 2 AA3 3 VAL A 159 LEU A 161 -1 O LEU A 161 N GLY A 111 SHEET 3 AA3 3 VAL A 167 LEU A 169 -1 O LYS A 168 N LEU A 160 SHEET 1 AA4 2 VAL A 149 ILE A 150 0 SHEET 2 AA4 2 ALA A 176 GLN A 177 -1 O ALA A 176 N ILE A 150 LINK C ARG A 180 N TPO A 181 1555 1555 1.34 LINK C TPO A 181 N VAL A 182 1555 1555 1.34 LINK C ASN A 186 N TPO A 187 1555 1555 1.34 LINK C TPO A 187 N PHE A 188 1555 1555 1.34 LINK N TRP B 2 C WFZ B 15 1555 1555 1.34 LINK C TRP B 3 N WEH B 4 1555 1555 1.34 LINK C WEH B 4 N SAR B 5 1555 1555 1.36 LINK C SAR B 5 N DHA B 6 1555 1555 1.34 LINK C DHA B 6 N SAR B 7 1555 1555 1.36 LINK C SAR B 7 N WET B 8 1555 1555 1.34 LINK C WET B 8 N DHA B 9 1555 1555 1.34 LINK C DHA B 9 N DHA B 10 1555 1555 1.34 LINK C DHA B 10 N THR B 11 1555 1555 1.34 LINK C THR B 11 N WGB B 12 1555 1555 1.34 LINK C WGB B 12 N DHA B 13 1555 1555 1.33 LINK C DHA B 13 N GLY B 14 1555 1555 1.34 LINK C GLY B 14 N WFZ B 15 1555 1555 1.36 CRYST1 53.720 53.720 220.170 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018615 0.010747 0.000000 0.00000 SCALE2 0.000000 0.021495 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004542 0.00000