HEADER LIGASE 06-OCT-23 8WO2 TITLE CRYSTAL STRUCTURE OF H. PYLORI ISOLEUCYL-TRNA SYNTHETASE (HPILERS) IN TITLE 2 COMPLEX WITH VAL-AMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOLEUCINE--TRNA LIGASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ISOLEUCYL-TRNA SYNTHETASE,ILERS; COMPND 5 EC: 6.1.1.5; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; SOURCE 3 ORGANISM_COMMON: CAMPYLOBACTER PYLORI; SOURCE 4 ORGANISM_TAXID: 210; SOURCE 5 GENE: ILES, C2840_07400; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ISOLEUCYL-TRNA SYNTHETASE, HELICOBACTER PYLORI, HPILERS, ILERS, KEYWDS 2 AMINOACYLATION, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.GUO,S.LI,T.ZHANG REVDAT 2 27-MAR-24 8WO2 1 JRNL REVDAT 1 14-FEB-24 8WO2 0 JRNL AUTH X.CHEN,Y.GUO,J.SHI,Y.WANG,X.GUO,G.WU,S.LI,T.ZHANG JRNL TITL STRUCTURAL BASIS FOR SUBSTRATE AND ANTIBIOTIC RECOGNITION BY JRNL TITL 2 HELICOBACTER PYLORI ISOLEUCYL-TRNA SYNTHETASE. JRNL REF FEBS LETT. V. 598 521 2024 JRNL REFN ISSN 0014-5793 JRNL PMID 38246751 JRNL DOI 10.1002/1873-3468.14805 REMARK 2 REMARK 2 RESOLUTION. 2.34 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.19.2_4158: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.34 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 3 NUMBER OF REFLECTIONS : 42442 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.910 REMARK 3 FREE R VALUE TEST SET COUNT : 2085 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 50.9700 - 5.7700 0.98 2808 136 0.2177 0.2500 REMARK 3 2 5.7700 - 4.5800 0.98 2783 161 0.1702 0.1908 REMARK 3 3 4.5800 - 4.0000 0.97 2775 135 0.1546 0.1876 REMARK 3 4 4.0000 - 3.7000 0.71 1646 85 0.1801 0.1964 REMARK 3 5 3.6200 - 3.3800 0.97 2569 152 0.1932 0.2237 REMARK 3 6 3.3800 - 3.1800 0.98 2814 129 0.2013 0.2481 REMARK 3 7 3.1800 - 3.0200 0.98 2771 151 0.2158 0.2305 REMARK 3 8 3.0200 - 2.8900 0.98 2804 144 0.2137 0.2356 REMARK 3 9 2.8900 - 2.7800 0.98 2781 125 0.2297 0.3079 REMARK 3 10 2.7800 - 2.6800 0.97 2833 129 0.2543 0.3216 REMARK 3 11 2.6800 - 2.6000 0.98 2808 154 0.2443 0.3007 REMARK 3 12 2.6000 - 2.5200 0.97 2731 116 0.2491 0.3204 REMARK 3 13 2.5200 - 2.4600 0.97 2821 162 0.2484 0.3095 REMARK 3 14 2.4600 - 2.4000 0.96 2684 140 0.2876 0.3167 REMARK 3 15 2.4000 - 2.3400 0.95 2729 166 0.3354 0.3463 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.870 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 7659 REMARK 3 ANGLE : 0.492 10342 REMARK 3 CHIRALITY : 0.039 1124 REMARK 3 PLANARITY : 0.004 1318 REMARK 3 DIHEDRAL : 15.490 2850 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 567 THROUGH 920 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.1792 -18.7926 -26.4385 REMARK 3 T TENSOR REMARK 3 T11: 0.2113 T22: 0.1628 REMARK 3 T33: 0.2064 T12: -0.0005 REMARK 3 T13: 0.0359 T23: -0.0215 REMARK 3 L TENSOR REMARK 3 L11: 0.4189 L22: 1.0950 REMARK 3 L33: 2.4186 L12: 0.5469 REMARK 3 L13: 0.7238 L23: 1.3033 REMARK 3 S TENSOR REMARK 3 S11: -0.0721 S12: 0.0102 S13: 0.0002 REMARK 3 S21: -0.1225 S22: -0.1073 S23: 0.1343 REMARK 3 S31: 0.1110 S32: -0.2009 S33: 0.1371 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 175 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.1718 -4.3230 -8.1033 REMARK 3 T TENSOR REMARK 3 T11: 0.1661 T22: 0.2077 REMARK 3 T33: 0.1713 T12: -0.0176 REMARK 3 T13: 0.0461 T23: 0.0338 REMARK 3 L TENSOR REMARK 3 L11: 0.4677 L22: 0.8291 REMARK 3 L33: 1.6001 L12: 0.3615 REMARK 3 L13: 0.5162 L23: 0.2440 REMARK 3 S TENSOR REMARK 3 S11: -0.1539 S12: 0.1572 S13: -0.0701 REMARK 3 S21: -0.1529 S22: -0.0147 S23: -0.1331 REMARK 3 S31: -0.1138 S32: 0.3356 S33: 0.1371 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 176 THROUGH 566 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.5950 -9.3408 29.5084 REMARK 3 T TENSOR REMARK 3 T11: 0.1416 T22: 0.1185 REMARK 3 T33: 0.1567 T12: 0.0008 REMARK 3 T13: -0.0144 T23: -0.0200 REMARK 3 L TENSOR REMARK 3 L11: 0.3933 L22: 1.1012 REMARK 3 L33: 1.9620 L12: 0.0247 REMARK 3 L13: 0.1622 L23: -0.8436 REMARK 3 S TENSOR REMARK 3 S11: 0.0056 S12: -0.0260 S13: 0.0597 REMARK 3 S21: 0.1759 S22: -0.1352 S23: -0.1132 REMARK 3 S31: -0.1551 S32: 0.1603 S33: 0.1053 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8WO2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 11-OCT-23. REMARK 100 THE DEPOSITION ID IS D_1300041602. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-NOV-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NFPSS REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9785 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42461 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.340 REMARK 200 RESOLUTION RANGE LOW (A) : 50.970 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.34 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.45500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.610 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, PH 7.5, 2% (V/V) REMARK 280 TACSIMATE, AND 20% (W/V) POLYETHYLENE GLYCOL (PEG) 3,350, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 109 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 313 CG ND1 CD2 CE1 NE2 REMARK 470 SER A 612 OG REMARK 470 LYS A 615 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 114 33.93 71.13 REMARK 500 SER A 116 -160.82 -161.03 REMARK 500 LEU A 117 100.39 -166.39 REMARK 500 GLN A 362 59.42 35.30 REMARK 500 ASN A 728 -70.79 -97.19 REMARK 500 LEU A 774 63.55 -101.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 895 SG REMARK 620 2 CYS A 898 SG 106.5 REMARK 620 3 CYS A 910 SG 111.8 109.1 REMARK 620 4 CYS A 913 SG 113.4 111.3 104.8 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8WNF RELATED DB: PDB REMARK 900 RELATED ID: 8WNG RELATED DB: PDB REMARK 900 RELATED ID: 8WNJ RELATED DB: PDB REMARK 900 RELATED ID: 8WNI RELATED DB: PDB DBREF1 8WO2 A 1 920 UNP A0A2J9KLI1_HELPX DBREF2 8WO2 A A0A2J9KLI1 1 920 SEQRES 1 A 920 MET GLU GLU TYR LYS ASP THR LEU ASN LEU ASN THR THR SEQRES 2 A 920 THR PHE SER MET LYS GLY ASN LEU SER VAL ASN GLU PRO SEQRES 3 A 920 LYS THR TYR ALA LYS TRP GLN GLU GLN GLN ALA PHE LYS SEQRES 4 A 920 ARG MET GLN ALA ARG LYS ASP ASN HIS GLY ASP PHE THR SEQRES 5 A 920 LEU HIS ASP GLY PRO PRO TYR ALA ASN GLY HIS LEU HIS SEQRES 6 A 920 LEU GLY HIS ALA LEU ASN LYS ILE LEU LYS ASP ILE VAL SEQRES 7 A 920 VAL LYS ARG GLU TYR PHE LYS GLY LYS LYS ILE TYR TYR SEQRES 8 A 920 THR PRO GLY TRP ASP CYS HIS GLY LEU PRO ILE GLU GLN SEQRES 9 A 920 GLN ILE LEU GLU ARG LEU GLU LYS GLU LYS THR SER LEU SEQRES 10 A 920 GLU ASN PRO THR LEU PHE ARG GLU LYS CYS ARG ASP HIS SEQRES 11 A 920 ALA LYS LYS PHE LEU GLU ILE GLN LYS ASN GLU PHE LEU SEQRES 12 A 920 GLN LEU GLY VAL LEU GLY ASP PHE GLU ASP PRO TYR LYS SEQRES 13 A 920 THR MET ASP PHE LYS PHE GLU ALA SER ILE TYR ARG ALA SEQRES 14 A 920 LEU VAL GLU VAL ALA LYS LYS GLY LEU LEU LYS GLU ARG SEQRES 15 A 920 HIS LYS PRO ILE TYR TRP SER TYR ALA CYS GLU SER ALA SEQRES 16 A 920 LEU ALA GLU ALA GLU VAL GLU TYR LYS MET LYS LYS SER SEQRES 17 A 920 PRO SER ILE PHE VAL ALA PHE GLY LEU LYS LYS GLU SER SEQRES 18 A 920 LEU GLU LYS LEU LYS VAL LYS LYS ALA SER LEU VAL ILE SEQRES 19 A 920 TRP THR THR THR PRO TRP THR LEU TYR ALA ASN VAL ALA SEQRES 20 A 920 ILE ALA LEU LYS LYS ASP ALA VAL TYR ALA LEU THR GLN SEQRES 21 A 920 LYS GLY TYR LEU VAL ALA LYS ALA LEU HIS GLU LYS LEU SEQRES 22 A 920 ALA ALA LEU GLY VAL VAL ASP ASN GLU ILE THR HIS GLU SEQRES 23 A 920 PHE ASN SER ASN ASP LEU GLU TYR LEU VAL ALA THR ASN SEQRES 24 A 920 PRO LEU ASN GLN ARG ASP SER LEU VAL ALA LEU GLY GLU SEQRES 25 A 920 HIS VAL GLY LEU GLU ASP GLY THR GLY ALA VAL HIS THR SEQRES 26 A 920 ALA PRO GLY HIS GLY GLU GLU ASP TYR TYR LEU GLY LEU SEQRES 27 A 920 ARG TYR ASN LEU GLU VAL LEU MET SER VAL ASP GLU LYS SEQRES 28 A 920 GLY CYS TYR ASP GLU GLY ILE ILE HIS ASN GLN LEU LEU SEQRES 29 A 920 ASP GLU SER TYR LEU GLY GLU HIS VAL PHE LYS ALA GLN SEQRES 30 A 920 LYS ARG ILE ILE GLU GLN LEU GLY ASP SER LEU LEU LEU SEQRES 31 A 920 GLU GLN GLU ILE GLU HIS SER TYR PRO HIS CYS TRP ARG SEQRES 32 A 920 THR HIS LYS PRO VAL ILE TYR ARG ALA THR THR GLN TRP SEQRES 33 A 920 PHE ILE LEU MET ASP GLU PRO PHE ILE GLN ASN ASP GLY SEQRES 34 A 920 SER GLN LYS THR LEU ARG GLU VAL ALA LEU ASP ALA ILE SEQRES 35 A 920 GLU LYS VAL GLU PHE VAL PRO SER SER GLY LYS ASN ARG SEQRES 36 A 920 LEU LYS THR MET ILE GLU ASN ARG PRO ASP TRP CYS LEU SEQRES 37 A 920 SER ARG GLN ARG LYS TRP GLY VAL PRO LEU ALA PHE PHE SEQRES 38 A 920 ILE ASP LYS ARG THR ASN LYS PRO CYS PHE GLU SER GLU SEQRES 39 A 920 VAL LEU GLU HIS VAL ALA ASN LEU PHE GLU LYS LYS GLY SEQRES 40 A 920 CYS ASP VAL TRP TRP GLU TYR SER VAL LYS ASP LEU LEU SEQRES 41 A 920 PRO PRO SER TYR GLN GLU ASP ALA LYS HIS TYR GLU LYS SEQRES 42 A 920 ILE MET HIS ILE LEU ASP VAL TRP PHE ASP SER GLY SER SEQRES 43 A 920 THR PHE LYS ALA VAL LEU GLU ASP TYR HIS GLY GLU LYS SEQRES 44 A 920 GLY GLN SER PRO SER ASP VAL ILE LEU GLU GLY SER ASP SEQRES 45 A 920 GLN HIS ARG GLY TRP PHE GLN SER SER LEU LEU ILE GLY SEQRES 46 A 920 CYS VAL LEU ASN ASN GLN ALA PRO PHE LYS LYS VAL ILE SEQRES 47 A 920 THR HIS GLY PHE ILE VAL ASP GLU LYS GLY GLU LYS MET SEQRES 48 A 920 SER LYS SER LYS GLY ASN VAL VAL SER LEU ASP LYS LEU SEQRES 49 A 920 LEU LYS THR HIS GLY SER ASP VAL VAL ARG LEU TRP VAL SEQRES 50 A 920 ALA PHE ASN ASP TYR GLN ASN ASP LEU ARG VAL SER GLN SEQRES 51 A 920 THR PHE PHE THR GLN THR GLU GLN HIS TYR LYS LYS PHE SEQRES 52 A 920 ARG ASN THR LEU LYS PHE LEU LEU ALA ASN PHE SER ASP SEQRES 53 A 920 MET ASP LEU LYS ASN LEU GLU ARG PRO HIS ASN PHE SER SEQRES 54 A 920 PRO LEU ASP HIS PHE MET LEU GLU THR LEU GLU THR ILE SEQRES 55 A 920 SER ALA GLY VAL ASN SER ALA PHE GLU GLU HIS ASP PHE SEQRES 56 A 920 VAL LYS GLY LEU ASN ILE LEU MET ALA PHE VAL THR ASN SEQRES 57 A 920 GLU LEU SER GLY ILE TYR LEU ASP ALA CYS LYS ASP SER SEQRES 58 A 920 LEU TYR CYS ASP SER LYS ASN ASN GLU LYS ARG GLN ALA SEQRES 59 A 920 ILE GLN MET VAL LEU LEU ALA THR ALA SER LYS LEU CYS SEQRES 60 A 920 TYR PHE LEU ALA PRO ILE LEU THR HIS THR ILE GLU GLU SEQRES 61 A 920 VAL LEU GLU HIS SER GLN ALA LEU ARG ILE PHE LEU GLN SEQRES 62 A 920 ALA LYS ASP VAL PHE ASP LEU LYS ASP ILE SER VAL SER SEQRES 63 A 920 GLU LYS LEU HIS LEU LYS GLU PHE LYS LYS PRO GLU ASN SEQRES 64 A 920 PHE GLU ALA VAL LEU ALA LEU ARG SER ALA PHE ASN GLU SEQRES 65 A 920 GLU LEU ASP ARG LEU LYS LYS GLU GLY VAL ILE LYS ASN SEQRES 66 A 920 SER LEU GLU CYS ALA ILE GLU VAL LYS GLU LYS ALA LEU SEQRES 67 A 920 ASP GLU ASN LEU VAL GLU GLU LEU LEU MET VAL SER PHE SEQRES 68 A 920 VAL GLY ILE ALA LYS GLU LYS LEU SER GLU THR PRO ALA SEQRES 69 A 920 PHE THR LEU PHE LYS ALA PRO PHE TYR LYS CYS PRO ARG SEQRES 70 A 920 CYS TRP ARG PHE LYS SER GLU LEU GLU ASN THR PRO CYS SEQRES 71 A 920 LYS ARG CYS GLU GLN VAL LEU LYS GLU ARG HET ZN A1001 1 HET GOL A1002 6 HET WN9 A1003 30 HET ACT A1004 4 HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETNAM WN9 [[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4- HETNAM 2 WN9 BIS(OXIDANYL)OXOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL] HETNAM 3 WN9 (2S)-2-AZANYL-3-METHYL-BUTANOATE HETNAM ACT ACETATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN WN9 VALYL ADENYLATE FORMUL 2 ZN ZN 2+ FORMUL 3 GOL C3 H8 O3 FORMUL 4 WN9 C15 H23 N6 O8 P FORMUL 5 ACT C2 H3 O2 1- FORMUL 6 HOH *317(H2 O) HELIX 1 AA1 TYR A 4 LEU A 8 5 5 HELIX 2 AA2 ASN A 20 GLN A 35 1 16 HELIX 3 AA3 GLN A 36 ALA A 43 1 8 HELIX 4 AA4 HIS A 65 LYS A 85 1 21 HELIX 5 AA5 GLY A 99 GLU A 113 1 15 HELIX 6 AA6 ASN A 119 GLN A 144 1 26 HELIX 7 AA7 ASP A 159 LYS A 176 1 18 HELIX 8 AA8 ALA A 197 ALA A 199 5 3 HELIX 9 AA9 LYS A 218 LYS A 226 1 9 HELIX 10 AB1 THR A 238 ASN A 245 5 8 HELIX 11 AB2 LEU A 269 LEU A 276 1 8 HELIX 12 AB3 ASN A 290 LEU A 292 5 3 HELIX 13 AB4 GLY A 330 TYR A 340 1 11 HELIX 14 AB5 GLU A 356 ASN A 361 1 6 HELIX 15 AB6 ASP A 365 LEU A 369 5 5 HELIX 16 AB7 ALA A 376 LEU A 384 1 9 HELIX 17 AB8 LEU A 434 GLU A 443 1 10 HELIX 18 AB9 SER A 451 ARG A 463 1 13 HELIX 19 AC1 GLU A 492 GLY A 507 1 16 HELIX 20 AC2 ASP A 509 TYR A 514 1 6 HELIX 21 AC3 PRO A 521 LYS A 529 5 9 HELIX 22 AC4 ASP A 539 SER A 546 1 8 HELIX 23 AC5 SER A 546 LEU A 552 1 7 HELIX 24 AC6 ASP A 572 HIS A 574 5 3 HELIX 25 AC7 GLY A 576 ASN A 589 1 14 HELIX 26 AC8 SER A 620 GLY A 629 1 10 HELIX 27 AC9 GLY A 629 PHE A 639 1 11 HELIX 28 AD1 SER A 649 PHE A 674 1 26 HELIX 29 AD2 ASP A 678 ARG A 684 5 7 HELIX 30 AD3 SER A 689 GLU A 712 1 24 HELIX 31 AD4 ASP A 714 ASN A 728 1 15 HELIX 32 AD5 ILE A 733 ASP A 745 1 13 HELIX 33 AD6 ASN A 749 ALA A 771 1 23 HELIX 34 AD7 LEU A 774 HIS A 784 1 11 HELIX 35 AD8 SER A 785 LEU A 792 1 8 HELIX 36 AD9 ASP A 796 LEU A 800 5 5 HELIX 37 AE1 SER A 804 LEU A 809 1 6 HELIX 38 AE2 PHE A 820 GLY A 841 1 22 HELIX 39 AE3 ASN A 845 LEU A 847 5 3 HELIX 40 AE4 ASP A 859 MET A 868 1 10 HELIX 41 AE5 CYS A 910 GLU A 919 1 10 SHEET 1 AA1 2 ASP A 50 THR A 52 0 SHEET 2 AA1 2 LYS A 88 TYR A 90 1 O LYS A 88 N PHE A 51 SHEET 1 AA2 2 GLY A 94 TRP A 95 0 SHEET 2 AA2 2 TYR A 155 LYS A 156 1 O TYR A 155 N TRP A 95 SHEET 1 AA3 4 SER A 194 ALA A 195 0 SHEET 2 AA3 4 LEU A 179 SER A 189 -1 N SER A 189 O SER A 194 SHEET 3 AA3 4 ILE A 409 ILE A 418 -1 O ILE A 409 N TRP A 188 SHEET 4 AA3 4 TRP A 466 CYS A 467 -1 O TRP A 466 N ILE A 418 SHEET 1 AA4 9 ILE A 283 ASN A 288 0 SHEET 2 AA4 9 VAL A 255 THR A 259 -1 N TYR A 256 O PHE A 287 SHEET 3 AA4 9 TYR A 263 ALA A 266 -1 O TYR A 263 N THR A 259 SHEET 4 AA4 9 SER A 231 THR A 236 1 N SER A 231 O LEU A 264 SHEET 5 AA4 9 VAL A 201 LEU A 217 -1 N PHE A 215 O LEU A 232 SHEET 6 AA4 9 VAL A 296 THR A 298 -1 O THR A 298 N GLY A 216 SHEET 7 AA4 9 ASP A 305 GLY A 311 -1 O SER A 306 N ALA A 297 SHEET 8 AA4 9 ALA A 247 LYS A 251 1 N ILE A 248 O ALA A 309 SHEET 9 AA4 9 ALA A 322 THR A 325 -1 O VAL A 323 N ALA A 249 SHEET 1 AA5 6 ILE A 283 ASN A 288 0 SHEET 2 AA5 6 VAL A 255 THR A 259 -1 N TYR A 256 O PHE A 287 SHEET 3 AA5 6 TYR A 263 ALA A 266 -1 O TYR A 263 N THR A 259 SHEET 4 AA5 6 SER A 231 THR A 236 1 N SER A 231 O LEU A 264 SHEET 5 AA5 6 VAL A 201 LEU A 217 -1 N PHE A 215 O LEU A 232 SHEET 6 AA5 6 LEU A 388 CYS A 401 -1 O HIS A 400 N GLU A 202 SHEET 1 AA6 2 PRO A 423 ILE A 425 0 SHEET 2 AA6 2 GLN A 431 THR A 433 -1 O LYS A 432 N PHE A 424 SHEET 1 AA7 3 GLU A 446 VAL A 448 0 SHEET 2 AA7 3 LYS A 596 HIS A 600 1 O VAL A 597 N VAL A 448 SHEET 3 AA7 3 ILE A 567 GLY A 570 1 N ILE A 567 O ILE A 598 SHEET 1 AA8 2 SER A 469 ARG A 470 0 SHEET 2 AA8 2 ILE A 537 LEU A 538 -1 O ILE A 537 N ARG A 470 SHEET 1 AA9 3 LYS A 488 PRO A 489 0 SHEET 2 AA9 3 PHE A 481 ASP A 483 -1 N ASP A 483 O LYS A 488 SHEET 3 AA9 3 TYR A 531 LYS A 533 -1 O GLU A 532 N ILE A 482 SHEET 1 AB1 2 ILE A 603 VAL A 604 0 SHEET 2 AB1 2 LEU A 646 ARG A 647 1 O LEU A 646 N VAL A 604 SHEET 1 AB2 4 PHE A 871 VAL A 872 0 SHEET 2 AB2 4 CYS A 849 VAL A 853 1 N ILE A 851 O PHE A 871 SHEET 3 AB2 4 PHE A 885 LYS A 889 -1 O PHE A 888 N ALA A 850 SHEET 4 AB2 4 LYS A 878 GLU A 881 -1 N LEU A 879 O LEU A 887 SHEET 1 AB3 2 TYR A 893 LYS A 894 0 SHEET 2 AB3 2 PHE A 901 SER A 903 -1 O SER A 903 N TYR A 893 LINK SG CYS A 895 ZN ZN A1001 1555 1555 2.33 LINK SG CYS A 898 ZN ZN A1001 1555 1555 2.33 LINK SG CYS A 910 ZN ZN A1001 1555 1555 2.33 LINK SG CYS A 913 ZN ZN A1001 1555 1555 2.33 CISPEP 1 VAL A 448 PRO A 449 0 -1.62 CISPEP 2 SER A 562 PRO A 563 0 2.77 CRYST1 52.972 53.084 102.947 97.15 92.61 105.11 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018878 0.005096 0.001597 0.00000 SCALE2 0.000000 0.019512 0.002785 0.00000 SCALE3 0.000000 0.000000 0.009822 0.00000