HEADER ISOMERASE 07-OCT-23 8WOV TITLE CRYSTAL STRUCTURE OF ARABIDOPSIS THALIANA UDP-GLUCOSE 4-EPIMERASE 2 TITLE 2 (ATUGE2) COMPLEXED WITH UDP, G233A MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-GLUCOSE 4-EPIMERASE 2; COMPND 3 CHAIN: B, A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: UGE2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-GOLD(DE3); SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PLASMID KEYWDS ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.MATSUMOTO,A.UMEZAWA,T.KOTAKE,S.FUSHINOBU REVDAT 1 15-MAY-24 8WOV 0 JRNL AUTH A.UMEZAWA,M.MATSUMOTO,H.HANDA,K.NAKAZAWA,M.MIYAGAWA, JRNL AUTH 2 G.J.SEIFERT,D.TAKAHASHI,S.FUSHINOBU,T.KOTAKE JRNL TITL CYTOSOLIC UDP-L-ARABINOSE SYNTHESIS BY BIFUNCTIONAL JRNL TITL 2 UDP-GLUCOSE 4-EPIMERASES IN ARABIDOPSIS. JRNL REF PLANT J. 2024 JRNL REFN ESSN 1365-313X JRNL PMID 38678521 JRNL DOI 10.1111/TPJ.16779 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.KOTAKE,R.TAKATA,R.VERMA,M.TAKABA,D.YAMAGUCHI,T.ORITA, REMARK 1 AUTH 2 S.KANEKO,K.MATSUOKA,T.KOYAMA,W.D.REITER,Y.TSUMURAYA REMARK 1 TITL BIFUNCTIONAL CYTOSOLIC UDP-GLUCOSE 4-EPIMERASES CATALYSE THE REMARK 1 TITL 2 INTERCONVERSION BETWEEN UDP-D-XYLOSE AND UDP-L-ARABINOSE IN REMARK 1 TITL 3 PLANTS. REMARK 1 REF BIOCHEM J V. 424 169 2009 REMARK 1 REFN ESSN 1470-8728 REMARK 1 PMID 19754426 REMARK 1 DOI 10.1042/BJ20091025 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0411 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.12 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 32954 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1794 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2372 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2180 REMARK 3 BIN FREE R VALUE SET COUNT : 152 REMARK 3 BIN FREE R VALUE : 0.2840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5245 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 138 REMARK 3 SOLVENT ATOMS : 107 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.78 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.68000 REMARK 3 B22 (A**2) : -1.94000 REMARK 3 B33 (A**2) : 0.26000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.273 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.213 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.158 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.505 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5519 ; 0.008 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 5105 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7515 ; 1.568 ; 1.651 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11767 ; 0.528 ; 1.571 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 675 ; 6.827 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 34 ;13.042 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 888 ;16.530 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 833 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6384 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1246 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2703 ; 2.998 ; 3.334 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2703 ; 2.998 ; 3.334 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3374 ; 4.316 ; 5.972 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3375 ; 4.315 ; 5.972 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2816 ; 4.405 ; 3.781 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2817 ; 4.404 ; 3.781 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4141 ; 6.567 ; 6.712 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6227 ; 7.945 ;33.000 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6216 ; 7.949 ;32.890 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8WOV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-OCT-23. REMARK 100 THE DEPOSITION ID IS D_1300041683. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-SEP-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99988 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS FEB 5, 2021 REMARK 200 DATA SCALING SOFTWARE : XDS FEB 5, 2021 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34777 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 49.120 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.13200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.62400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 11.0 REMARK 200 STARTING MODEL: 1EK6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20-22% (W/V) PEG3350 AND 0.16-0.18 M REMARK 280 MAGNESIUM FORMATE, PH 7.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.31350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.31350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 50.74500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.62150 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 50.74500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.62150 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 65.31350 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 50.74500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 54.62150 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 65.31350 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 50.74500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 54.62150 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 ASN B 342 REMARK 465 SER B 343 REMARK 465 SER B 344 REMARK 465 SER B 345 REMARK 465 ASN B 346 REMARK 465 GLY B 347 REMARK 465 SER B 348 REMARK 465 SER B 349 REMARK 465 SER B 350 REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 LYS A 3 REMARK 465 LEU A 257 REMARK 465 LYS A 258 REMARK 465 ILE A 259 REMARK 465 ASN A 342 REMARK 465 SER A 343 REMARK 465 SER A 344 REMARK 465 SER A 345 REMARK 465 ASN A 346 REMARK 465 GLY A 347 REMARK 465 SER A 348 REMARK 465 SER A 349 REMARK 465 SER A 350 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 155 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 PHE B 182 CB - CA - C ANGL. DEV. = 13.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR B 13 -70.86 -55.49 REMARK 500 ASP B 171 97.42 -165.86 REMARK 500 PHE B 182 -112.00 -89.03 REMARK 500 LYS A 89 16.84 -143.60 REMARK 500 SER A 148 117.32 -164.51 REMARK 500 ASP A 171 105.93 -166.31 REMARK 500 PHE A 182 -101.04 -87.03 REMARK 500 GLU A 302 -60.29 -93.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 56 0.08 SIDE CHAIN REMARK 500 ARG B 155 0.21 SIDE CHAIN REMARK 500 ARG B 165 0.17 SIDE CHAIN REMARK 500 ARG B 216 0.08 SIDE CHAIN REMARK 500 ARG B 252 0.09 SIDE CHAIN REMARK 500 ARG A 56 0.12 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 8WOV B 1 350 UNP Q9T0A7 UGE2_ARATH 1 350 DBREF 8WOV A 1 350 UNP Q9T0A7 UGE2_ARATH 1 350 SEQADV 8WOV MET B -19 UNP Q9T0A7 INITIATING METHIONINE SEQADV 8WOV GLY B -18 UNP Q9T0A7 EXPRESSION TAG SEQADV 8WOV SER B -17 UNP Q9T0A7 EXPRESSION TAG SEQADV 8WOV SER B -16 UNP Q9T0A7 EXPRESSION TAG SEQADV 8WOV HIS B -15 UNP Q9T0A7 EXPRESSION TAG SEQADV 8WOV HIS B -14 UNP Q9T0A7 EXPRESSION TAG SEQADV 8WOV HIS B -13 UNP Q9T0A7 EXPRESSION TAG SEQADV 8WOV HIS B -12 UNP Q9T0A7 EXPRESSION TAG SEQADV 8WOV HIS B -11 UNP Q9T0A7 EXPRESSION TAG SEQADV 8WOV HIS B -10 UNP Q9T0A7 EXPRESSION TAG SEQADV 8WOV SER B -9 UNP Q9T0A7 EXPRESSION TAG SEQADV 8WOV SER B -8 UNP Q9T0A7 EXPRESSION TAG SEQADV 8WOV GLY B -7 UNP Q9T0A7 EXPRESSION TAG SEQADV 8WOV LEU B -6 UNP Q9T0A7 EXPRESSION TAG SEQADV 8WOV VAL B -5 UNP Q9T0A7 EXPRESSION TAG SEQADV 8WOV PRO B -4 UNP Q9T0A7 EXPRESSION TAG SEQADV 8WOV ARG B -3 UNP Q9T0A7 EXPRESSION TAG SEQADV 8WOV GLY B -2 UNP Q9T0A7 EXPRESSION TAG SEQADV 8WOV SER B -1 UNP Q9T0A7 EXPRESSION TAG SEQADV 8WOV HIS B 0 UNP Q9T0A7 EXPRESSION TAG SEQADV 8WOV ALA B 233 UNP Q9T0A7 GLY 233 ENGINEERED MUTATION SEQADV 8WOV MET A -19 UNP Q9T0A7 INITIATING METHIONINE SEQADV 8WOV GLY A -18 UNP Q9T0A7 EXPRESSION TAG SEQADV 8WOV SER A -17 UNP Q9T0A7 EXPRESSION TAG SEQADV 8WOV SER A -16 UNP Q9T0A7 EXPRESSION TAG SEQADV 8WOV HIS A -15 UNP Q9T0A7 EXPRESSION TAG SEQADV 8WOV HIS A -14 UNP Q9T0A7 EXPRESSION TAG SEQADV 8WOV HIS A -13 UNP Q9T0A7 EXPRESSION TAG SEQADV 8WOV HIS A -12 UNP Q9T0A7 EXPRESSION TAG SEQADV 8WOV HIS A -11 UNP Q9T0A7 EXPRESSION TAG SEQADV 8WOV HIS A -10 UNP Q9T0A7 EXPRESSION TAG SEQADV 8WOV SER A -9 UNP Q9T0A7 EXPRESSION TAG SEQADV 8WOV SER A -8 UNP Q9T0A7 EXPRESSION TAG SEQADV 8WOV GLY A -7 UNP Q9T0A7 EXPRESSION TAG SEQADV 8WOV LEU A -6 UNP Q9T0A7 EXPRESSION TAG SEQADV 8WOV VAL A -5 UNP Q9T0A7 EXPRESSION TAG SEQADV 8WOV PRO A -4 UNP Q9T0A7 EXPRESSION TAG SEQADV 8WOV ARG A -3 UNP Q9T0A7 EXPRESSION TAG SEQADV 8WOV GLY A -2 UNP Q9T0A7 EXPRESSION TAG SEQADV 8WOV SER A -1 UNP Q9T0A7 EXPRESSION TAG SEQADV 8WOV HIS A 0 UNP Q9T0A7 EXPRESSION TAG SEQADV 8WOV ALA A 233 UNP Q9T0A7 GLY 233 ENGINEERED MUTATION SEQRES 1 B 370 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 370 LEU VAL PRO ARG GLY SER HIS MET ALA LYS SER VAL LEU SEQRES 3 B 370 VAL THR GLY GLY ALA GLY TYR ILE GLY SER HIS THR VAL SEQRES 4 B 370 LEU GLN LEU LEU GLU GLY GLY TYR SER ALA VAL VAL VAL SEQRES 5 B 370 ASP ASN TYR ASP ASN SER SER ALA ALA SER LEU GLN ARG SEQRES 6 B 370 VAL LYS LYS LEU ALA GLY GLU ASN GLY ASN ARG LEU SER SEQRES 7 B 370 PHE HIS GLN VAL ASP LEU ARG ASP ARG PRO ALA LEU GLU SEQRES 8 B 370 LYS ILE PHE SER GLU THR LYS PHE ASP ALA VAL ILE HIS SEQRES 9 B 370 PHE ALA GLY LEU LYS ALA VAL GLY GLU SER VAL GLU LYS SEQRES 10 B 370 PRO LEU LEU TYR TYR ASN ASN ASN ILE VAL GLY THR VAL SEQRES 11 B 370 THR LEU LEU GLU VAL MET ALA GLN TYR GLY CYS LYS ASN SEQRES 12 B 370 LEU VAL PHE SER SER SER ALA THR VAL TYR GLY TRP PRO SEQRES 13 B 370 LYS GLU VAL PRO CYS THR GLU GLU SER PRO ILE SER ALA SEQRES 14 B 370 THR ASN PRO TYR GLY ARG THR LYS LEU PHE ILE GLU GLU SEQRES 15 B 370 ILE CYS ARG ASP VAL HIS ARG SER ASP SER GLU TRP LYS SEQRES 16 B 370 ILE ILE LEU LEU ARG TYR PHE ASN PRO VAL GLY ALA HIS SEQRES 17 B 370 PRO SER GLY TYR ILE GLY GLU ASP PRO LEU GLY VAL PRO SEQRES 18 B 370 ASN ASN LEU MET PRO TYR VAL GLN GLN VAL ALA VAL GLY SEQRES 19 B 370 ARG ARG PRO HIS LEU THR VAL PHE GLY THR ASP TYR LYS SEQRES 20 B 370 THR LYS ASP GLY THR ALA VAL ARG ASP TYR ILE HIS VAL SEQRES 21 B 370 MET ASP LEU ALA ASP GLY HIS ILE ALA ALA LEU ARG LYS SEQRES 22 B 370 LEU ASP ASP LEU LYS ILE SER CYS GLU VAL TYR ASN LEU SEQRES 23 B 370 GLY THR GLY ASN GLY THR SER VAL LEU GLU MET VAL ALA SEQRES 24 B 370 ALA PHE GLU LYS ALA SER GLY LYS LYS ILE PRO LEU VAL SEQRES 25 B 370 MET ALA GLY ARG ARG PRO GLY ASP ALA GLU VAL VAL TYR SEQRES 26 B 370 ALA SER THR GLU LYS ALA GLU ARG GLU LEU ASN TRP LYS SEQRES 27 B 370 ALA LYS ASN GLY ILE GLU GLU MET CYS ARG ASP LEU TRP SEQRES 28 B 370 ASN TRP ALA SER ASN ASN PRO TYR GLY TYR ASN SER SER SEQRES 29 B 370 SER ASN GLY SER SER SER SEQRES 1 A 370 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 370 LEU VAL PRO ARG GLY SER HIS MET ALA LYS SER VAL LEU SEQRES 3 A 370 VAL THR GLY GLY ALA GLY TYR ILE GLY SER HIS THR VAL SEQRES 4 A 370 LEU GLN LEU LEU GLU GLY GLY TYR SER ALA VAL VAL VAL SEQRES 5 A 370 ASP ASN TYR ASP ASN SER SER ALA ALA SER LEU GLN ARG SEQRES 6 A 370 VAL LYS LYS LEU ALA GLY GLU ASN GLY ASN ARG LEU SER SEQRES 7 A 370 PHE HIS GLN VAL ASP LEU ARG ASP ARG PRO ALA LEU GLU SEQRES 8 A 370 LYS ILE PHE SER GLU THR LYS PHE ASP ALA VAL ILE HIS SEQRES 9 A 370 PHE ALA GLY LEU LYS ALA VAL GLY GLU SER VAL GLU LYS SEQRES 10 A 370 PRO LEU LEU TYR TYR ASN ASN ASN ILE VAL GLY THR VAL SEQRES 11 A 370 THR LEU LEU GLU VAL MET ALA GLN TYR GLY CYS LYS ASN SEQRES 12 A 370 LEU VAL PHE SER SER SER ALA THR VAL TYR GLY TRP PRO SEQRES 13 A 370 LYS GLU VAL PRO CYS THR GLU GLU SER PRO ILE SER ALA SEQRES 14 A 370 THR ASN PRO TYR GLY ARG THR LYS LEU PHE ILE GLU GLU SEQRES 15 A 370 ILE CYS ARG ASP VAL HIS ARG SER ASP SER GLU TRP LYS SEQRES 16 A 370 ILE ILE LEU LEU ARG TYR PHE ASN PRO VAL GLY ALA HIS SEQRES 17 A 370 PRO SER GLY TYR ILE GLY GLU ASP PRO LEU GLY VAL PRO SEQRES 18 A 370 ASN ASN LEU MET PRO TYR VAL GLN GLN VAL ALA VAL GLY SEQRES 19 A 370 ARG ARG PRO HIS LEU THR VAL PHE GLY THR ASP TYR LYS SEQRES 20 A 370 THR LYS ASP GLY THR ALA VAL ARG ASP TYR ILE HIS VAL SEQRES 21 A 370 MET ASP LEU ALA ASP GLY HIS ILE ALA ALA LEU ARG LYS SEQRES 22 A 370 LEU ASP ASP LEU LYS ILE SER CYS GLU VAL TYR ASN LEU SEQRES 23 A 370 GLY THR GLY ASN GLY THR SER VAL LEU GLU MET VAL ALA SEQRES 24 A 370 ALA PHE GLU LYS ALA SER GLY LYS LYS ILE PRO LEU VAL SEQRES 25 A 370 MET ALA GLY ARG ARG PRO GLY ASP ALA GLU VAL VAL TYR SEQRES 26 A 370 ALA SER THR GLU LYS ALA GLU ARG GLU LEU ASN TRP LYS SEQRES 27 A 370 ALA LYS ASN GLY ILE GLU GLU MET CYS ARG ASP LEU TRP SEQRES 28 A 370 ASN TRP ALA SER ASN ASN PRO TYR GLY TYR ASN SER SER SEQRES 29 A 370 SER ASN GLY SER SER SER HET NAD B 401 44 HET UDP B 402 25 HET UDP A 401 25 HET NAD A 402 44 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM UDP URIDINE-5'-DIPHOSPHATE FORMUL 3 NAD 2(C21 H27 N7 O14 P2) FORMUL 4 UDP 2(C9 H14 N2 O12 P2) FORMUL 7 HOH *107(H2 O) HELIX 1 AA1 GLY B 12 GLY B 25 1 14 HELIX 2 AA2 ALA B 40 ALA B 50 1 11 HELIX 3 AA3 GLY B 51 ASN B 55 5 5 HELIX 4 AA4 ASP B 66 THR B 77 1 12 HELIX 5 AA5 ALA B 90 LYS B 97 1 8 HELIX 6 AA6 LYS B 97 TYR B 119 1 23 HELIX 7 AA7 THR B 131 GLY B 134 5 4 HELIX 8 AA8 ASN B 151 ASP B 171 1 21 HELIX 9 AA9 ASN B 203 VAL B 213 1 11 HELIX 10 AB1 VAL B 240 LEU B 254 1 15 HELIX 11 AB2 VAL B 274 GLY B 286 1 13 HELIX 12 AB3 THR B 308 ASN B 316 1 9 HELIX 13 AB4 GLY B 322 ASN B 337 1 16 HELIX 14 AB5 GLY A 12 GLY A 25 1 14 HELIX 15 AB6 SER A 39 ALA A 50 1 12 HELIX 16 AB7 GLY A 51 ASN A 55 5 5 HELIX 17 AB8 ASP A 66 THR A 77 1 12 HELIX 18 AB9 ALA A 90 LYS A 97 1 8 HELIX 19 AC1 LYS A 97 TYR A 119 1 23 HELIX 20 AC2 THR A 131 GLY A 134 5 4 HELIX 21 AC3 ASN A 151 ASP A 171 1 21 HELIX 22 AC4 ASN A 203 VAL A 213 1 11 HELIX 23 AC5 VAL A 240 LEU A 254 1 15 HELIX 24 AC6 VAL A 274 GLY A 286 1 13 HELIX 25 AC7 THR A 308 ASN A 316 1 9 HELIX 26 AC8 GLY A 322 ASN A 337 1 16 SHEET 1 AA1 7 LEU B 57 GLN B 61 0 SHEET 2 AA1 7 SER B 28 ASP B 33 1 N VAL B 31 O HIS B 60 SHEET 3 AA1 7 SER B 4 THR B 8 1 N VAL B 7 O VAL B 30 SHEET 4 AA1 7 ALA B 81 HIS B 84 1 O ILE B 83 N LEU B 6 SHEET 5 AA1 7 ASN B 123 SER B 129 1 O VAL B 125 N HIS B 84 SHEET 6 AA1 7 LYS B 175 TYR B 181 1 O ILE B 177 N PHE B 126 SHEET 7 AA1 7 CYS B 261 LEU B 266 1 O GLU B 262 N LEU B 178 SHEET 1 AA2 2 ASN B 183 VAL B 185 0 SHEET 2 AA2 2 TYR B 237 HIS B 239 1 O ILE B 238 N VAL B 185 SHEET 1 AA3 2 LEU B 219 PHE B 222 0 SHEET 2 AA3 2 LEU B 291 ALA B 294 1 O VAL B 292 N VAL B 221 SHEET 1 AA4 2 VAL B 234 ARG B 235 0 SHEET 2 AA4 2 THR B 272 SER B 273 -1 O THR B 272 N ARG B 235 SHEET 1 AA5 7 LEU A 57 GLN A 61 0 SHEET 2 AA5 7 ALA A 29 ASP A 33 1 N VAL A 31 O SER A 58 SHEET 3 AA5 7 VAL A 5 THR A 8 1 N VAL A 7 O VAL A 30 SHEET 4 AA5 7 ALA A 81 HIS A 84 1 O ILE A 83 N LEU A 6 SHEET 5 AA5 7 ASN A 123 SER A 129 1 O VAL A 125 N HIS A 84 SHEET 6 AA5 7 LYS A 175 TYR A 181 1 O LEU A 179 N SER A 128 SHEET 7 AA5 7 CYS A 261 LEU A 266 1 O GLU A 262 N LEU A 178 SHEET 1 AA6 2 ASN A 183 VAL A 185 0 SHEET 2 AA6 2 TYR A 237 HIS A 239 1 O ILE A 238 N VAL A 185 SHEET 1 AA7 2 LEU A 219 PHE A 222 0 SHEET 2 AA7 2 LEU A 291 ALA A 294 1 O ALA A 294 N VAL A 221 SHEET 1 AA8 2 VAL A 234 ARG A 235 0 SHEET 2 AA8 2 THR A 272 SER A 273 -1 O THR A 272 N ARG A 235 CISPEP 1 VAL B 139 PRO B 140 0 -3.35 CISPEP 2 VAL A 139 PRO A 140 0 -0.16 CRYST1 101.490 109.243 130.627 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009853 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009154 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007655 0.00000