HEADER UNKNOWN FUNCTION 12-OCT-23 8WQN TITLE STRUCTURE OF SACCHAROLOBUS SOLFATARICUS SEGC (SSO0033) PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SEGC; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: C-TERMINAL MISSING SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROLOBUS SOLFATARICUS P2; SOURCE 3 ORGANISM_TAXID: 273057; SOURCE 4 GENE: SSO0033; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DNA BINDING PROTEIN, PARTITION PROTEIN, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR C.Y.YEN,M.G.LIN,Y.J.SUN,C.D.HSIAO REVDAT 1 07-AUG-24 8WQN 0 JRNL AUTH M.G.LIN,C.Y.YEN,Y.Y.SHEN,Y.S.HUANG,I.W.NG,D.BARILLA,Y.J.SUN, JRNL AUTH 2 C.D.HSIAO JRNL TITL UNRAVELING THE STRUCTURE AND FUNCTION OF A NOVEL SEGC JRNL TITL 2 PROTEIN INTERACTING WITH THE SEGAB CHROMOSOME SEGREGATION JRNL TITL 3 COMPLEX IN ARCHAEA. JRNL REF NUCLEIC ACIDS RES. 2024 JRNL REFN ESSN 1362-4962 JRNL PMID 39077943 JRNL DOI 10.1093/NAR/GKAE660 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 3 NUMBER OF REFLECTIONS : 15757 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1575 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.1000 - 4.0000 0.90 1313 155 0.1949 0.2135 REMARK 3 2 4.0000 - 3.1700 0.94 1300 144 0.1792 0.2120 REMARK 3 3 3.1700 - 2.7700 0.96 1311 138 0.2025 0.2326 REMARK 3 4 2.7700 - 2.5200 0.96 1293 142 0.1911 0.2237 REMARK 3 5 2.5200 - 2.3400 0.97 1297 148 0.1796 0.2514 REMARK 3 6 2.3400 - 2.2000 0.97 1301 141 0.1778 0.2379 REMARK 3 7 2.2000 - 2.0900 0.97 1298 144 0.1728 0.2004 REMARK 3 8 2.0900 - 2.0000 0.98 1283 144 0.1769 0.2278 REMARK 3 9 2.0000 - 1.9200 0.97 1304 152 0.1847 0.2037 REMARK 3 10 1.9200 - 1.8600 0.95 1269 129 0.1842 0.1881 REMARK 3 11 1.8600 - 1.8000 0.92 1213 138 0.1876 0.2172 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.850 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1270 REMARK 3 ANGLE : 0.869 1703 REMARK 3 CHIRALITY : 0.059 188 REMARK 3 PLANARITY : 0.008 212 REMARK 3 DIHEDRAL : 5.149 172 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8WQN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-OCT-23. REMARK 100 THE DEPOSITION ID IS D_1300041467. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-AUG-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : TPS 05A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99984 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15953 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.38700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM ACETATE PH 4.6, CALCIUM REMARK 280 CHLORIDE, AND MPD, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 16.95500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.91800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.07600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 35.91800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 16.95500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.07600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 156 REMARK 465 ALA A 157 REMARK 465 GLY A 158 REMARK 465 GLY A 159 REMARK 465 ILE A 160 REMARK 465 LEU A 161 REMARK 465 HIS A 162 REMARK 465 MET A 163 REMARK 465 ILE A 164 REMARK 465 ARG A 165 REMARK 465 LEU A 166 REMARK 465 GLU A 167 REMARK 465 HIS A 168 REMARK 465 HIS A 169 REMARK 465 HIS A 170 REMARK 465 HIS A 171 REMARK 465 HIS A 172 REMARK 465 HIS A 173 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 47 16.44 -144.34 REMARK 500 REMARK 500 REMARK: NULL DBREF 8WQN A 1 165 UNP Q981B4 Q981B4_SACS2 1 165 SEQADV 8WQN LEU A 166 UNP Q981B4 EXPRESSION TAG SEQADV 8WQN GLU A 167 UNP Q981B4 EXPRESSION TAG SEQADV 8WQN HIS A 168 UNP Q981B4 EXPRESSION TAG SEQADV 8WQN HIS A 169 UNP Q981B4 EXPRESSION TAG SEQADV 8WQN HIS A 170 UNP Q981B4 EXPRESSION TAG SEQADV 8WQN HIS A 171 UNP Q981B4 EXPRESSION TAG SEQADV 8WQN HIS A 172 UNP Q981B4 EXPRESSION TAG SEQADV 8WQN HIS A 173 UNP Q981B4 EXPRESSION TAG SEQRES 1 A 173 MET PHE GLU LYS LEU TYR SER ALA ILE ILE TYR SER ASP SEQRES 2 A 173 GLU PHE LYS LYS ILE LEU LEU GLY ARG GLY VAL ASP ASP SEQRES 3 A 173 LEU GLU ILE ALA SER ALA TYR ILE ALA PHE LEU TYR GLU SEQRES 4 A 173 ASP LEU PRO ILE ILE GLY LYS ASN LEU CYS ALA ALA PHE SEQRES 5 A 173 LEU ARG MET GLY LEU ASP ALA VAL TYR ASN VAL MET PRO SEQRES 6 A 173 SER GLY LYS VAL TYR SER PRO ARG HIS LYS LEU TYR PRO SEQRES 7 A 173 ILE SER ARG TYR GLY ILE ASP GLY VAL CYS ILE ASN CYS SEQRES 8 A 173 ASP GLY GLY LYS ILE ILE LEU ARG ILE SER ASN LYS GLY SEQRES 9 A 173 TYR ASP PRO GLU ASP LEU LEU GLU SER LYS GLY LEU GLU SEQRES 10 A 173 SER ARG ILE PHE VAL SER LYS ASN PHE LYS LYS LYS SER SEQRES 11 A 173 MET GLU ILE ILE GLU LYS ILE TRP ASP VAL ASN LYS ILE SEQRES 12 A 173 ARG LEU ILE ALA ARG LYS GLU ILE LEU GLU ARG ILE SER SEQRES 13 A 173 ALA GLY GLY ILE LEU HIS MET ILE ARG LEU GLU HIS HIS SEQRES 14 A 173 HIS HIS HIS HIS FORMUL 2 HOH *127(H2 O) HELIX 1 AA1 PHE A 2 GLY A 21 1 20 HELIX 2 AA2 ASP A 25 TYR A 38 1 14 HELIX 3 AA3 ASN A 47 GLY A 56 1 10 HELIX 4 AA4 LEU A 57 VAL A 63 5 7 HELIX 5 AA5 SER A 71 HIS A 74 5 4 HELIX 6 AA6 ASP A 106 SER A 113 1 8 HELIX 7 AA7 ASN A 125 TRP A 138 1 14 HELIX 8 AA8 ASP A 139 ILE A 155 1 17 SHEET 1 AA1 5 LEU A 76 TYR A 77 0 SHEET 2 AA1 5 ILE A 43 GLY A 45 1 N GLY A 45 O TYR A 77 SHEET 3 AA1 5 VAL A 87 ILE A 89 1 O ILE A 89 N ILE A 44 SHEET 4 AA1 5 ILE A 96 ILE A 100 1 O ILE A 96 N CYS A 88 SHEET 5 AA1 5 ARG A 119 VAL A 122 1 O ILE A 120 N ILE A 97 SSBOND 1 CYS A 88 CYS A 91 1555 1555 2.04 CRYST1 33.910 70.152 71.836 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029490 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014255 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013921 0.00000