data_8WQP # _entry.id 8WQP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.397 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8WQP pdb_00008wqp 10.2210/pdb8wqp/pdb WWPDB D_1300040539 ? ? EMDB EMD-37751 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2024-10-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8WQP _pdbx_database_status.recvd_initial_deposition_date 2023-10-12 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Cryo-EM structure of T. pseudonana PyShell helical tube' _pdbx_database_related.db_id EMD-37751 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email gkurisu@protein.osaka-u.ac.jp _pdbx_contact_author.name_first Genji _pdbx_contact_author.name_last Kurisu _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-5354-0807 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Kawamoto, A.' 1 0000-0002-7380-0127 'Tohda, R.' 2 0000-0001-5644-1399 'Gerle, C.' 3 0000-0002-7265-2804 'Kurisu, G.' 4 0000-0002-5354-0807 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Cell _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 187 _citation.language ? _citation.page_first 1 _citation.page_last 16 _citation.title 'Diatom pyrenoids are encased in a protein shell that enables efficient CO2 fixation' _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.cell.2024.09.013 _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Shimakawa, G.' 1 0000-0002-8557-2096 primary 'Demulder, M.' 2 0000-0002-6015-850X primary 'Flori, S.' 3 0000-0003-3407-2785 primary 'Kawamoto, A.' 4 0000-0002-7380-0127 primary 'Tsuji, Y.' 5 ? primary 'Nawaly, H.' 6 ? primary 'Tanaka, A.' 7 ? primary 'Tohda, R.' 8 0000-0001-5644-1399 primary 'Ota, T.' 9 ? primary 'Matsui, H.' 10 ? primary 'Morishima, N.' 11 ? primary 'Okubo, R.' 12 ? primary 'Wietrzynski, W.' 13 ? primary 'Lamm, L.' 14 ? primary 'Righetto, D.R.' 15 ? primary 'Uwizeye, C.' 16 0000-0002-5323-6098 primary 'Gallet, B.' 17 0000-0001-8758-7681 primary 'Jouneau, H.P.' 18 0000-0003-0350-4901 primary 'Gerle, C.' 19 0000-0002-7265-2804 primary 'Kurisu, G.' 20 0000-0002-5354-0807 primary 'Finazzi, G.' 21 0000-0003-0597-7075 primary 'Engel, D.B.' 22 0000-0002-0941-4387 primary 'Matsuda, Y.' 23 0000-0002-1892-4397 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Diatom the pyrenoid shell protein' _entity.formula_weight 24986.020 _entity.pdbx_number_of_molecules 2 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)(UNK)WDNSSPVIVQGGSLRTWSFANPAIESVQVLLKTEGRPLDADVELW QGPDNTPHKMRVYVEDGALRTFNAVIGTPRGPNTVAIRNIGQLEFPLDAVVRPDRDDGLAAGIASVATRSETIQGGALRT YPFNPTVDSVAIILKTDGRPLNARIELLQGPNNNKQVVELYTEDGLDRPFFAIVETPGSGNVVRVVNTAPVEFPLYASVD AYRVGGGGDWADDGLMIGRAF ; _entity_poly.pdbx_seq_one_letter_code_can ;XXXXXXXWDNSSPVIVQGGSLRTWSFANPAIESVQVLLKTEGRPLDADVELWQGPDNTPHKMRVYVEDGALRTFNAVIGT PRGPNTVAIRNIGQLEFPLDAVVRPDRDDGLAAGIASVATRSETIQGGALRTYPFNPTVDSVAIILKTDGRPLNARIELL QGPNNNKQVVELYTEDGLDRPFFAIVETPGSGNVVRVVNTAPVEFPLYASVDAYRVGGGGDWADDGLMIGRAF ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 UNK n 1 2 UNK n 1 3 UNK n 1 4 UNK n 1 5 UNK n 1 6 UNK n 1 7 UNK n 1 8 TRP n 1 9 ASP n 1 10 ASN n 1 11 SER n 1 12 SER n 1 13 PRO n 1 14 VAL n 1 15 ILE n 1 16 VAL n 1 17 GLN n 1 18 GLY n 1 19 GLY n 1 20 SER n 1 21 LEU n 1 22 ARG n 1 23 THR n 1 24 TRP n 1 25 SER n 1 26 PHE n 1 27 ALA n 1 28 ASN n 1 29 PRO n 1 30 ALA n 1 31 ILE n 1 32 GLU n 1 33 SER n 1 34 VAL n 1 35 GLN n 1 36 VAL n 1 37 LEU n 1 38 LEU n 1 39 LYS n 1 40 THR n 1 41 GLU n 1 42 GLY n 1 43 ARG n 1 44 PRO n 1 45 LEU n 1 46 ASP n 1 47 ALA n 1 48 ASP n 1 49 VAL n 1 50 GLU n 1 51 LEU n 1 52 TRP n 1 53 GLN n 1 54 GLY n 1 55 PRO n 1 56 ASP n 1 57 ASN n 1 58 THR n 1 59 PRO n 1 60 HIS n 1 61 LYS n 1 62 MET n 1 63 ARG n 1 64 VAL n 1 65 TYR n 1 66 VAL n 1 67 GLU n 1 68 ASP n 1 69 GLY n 1 70 ALA n 1 71 LEU n 1 72 ARG n 1 73 THR n 1 74 PHE n 1 75 ASN n 1 76 ALA n 1 77 VAL n 1 78 ILE n 1 79 GLY n 1 80 THR n 1 81 PRO n 1 82 ARG n 1 83 GLY n 1 84 PRO n 1 85 ASN n 1 86 THR n 1 87 VAL n 1 88 ALA n 1 89 ILE n 1 90 ARG n 1 91 ASN n 1 92 ILE n 1 93 GLY n 1 94 GLN n 1 95 LEU n 1 96 GLU n 1 97 PHE n 1 98 PRO n 1 99 LEU n 1 100 ASP n 1 101 ALA n 1 102 VAL n 1 103 VAL n 1 104 ARG n 1 105 PRO n 1 106 ASP n 1 107 ARG n 1 108 ASP n 1 109 ASP n 1 110 GLY n 1 111 LEU n 1 112 ALA n 1 113 ALA n 1 114 GLY n 1 115 ILE n 1 116 ALA n 1 117 SER n 1 118 VAL n 1 119 ALA n 1 120 THR n 1 121 ARG n 1 122 SER n 1 123 GLU n 1 124 THR n 1 125 ILE n 1 126 GLN n 1 127 GLY n 1 128 GLY n 1 129 ALA n 1 130 LEU n 1 131 ARG n 1 132 THR n 1 133 TYR n 1 134 PRO n 1 135 PHE n 1 136 ASN n 1 137 PRO n 1 138 THR n 1 139 VAL n 1 140 ASP n 1 141 SER n 1 142 VAL n 1 143 ALA n 1 144 ILE n 1 145 ILE n 1 146 LEU n 1 147 LYS n 1 148 THR n 1 149 ASP n 1 150 GLY n 1 151 ARG n 1 152 PRO n 1 153 LEU n 1 154 ASN n 1 155 ALA n 1 156 ARG n 1 157 ILE n 1 158 GLU n 1 159 LEU n 1 160 LEU n 1 161 GLN n 1 162 GLY n 1 163 PRO n 1 164 ASN n 1 165 ASN n 1 166 ASN n 1 167 LYS n 1 168 GLN n 1 169 VAL n 1 170 VAL n 1 171 GLU n 1 172 LEU n 1 173 TYR n 1 174 THR n 1 175 GLU n 1 176 ASP n 1 177 GLY n 1 178 LEU n 1 179 ASP n 1 180 ARG n 1 181 PRO n 1 182 PHE n 1 183 PHE n 1 184 ALA n 1 185 ILE n 1 186 VAL n 1 187 GLU n 1 188 THR n 1 189 PRO n 1 190 GLY n 1 191 SER n 1 192 GLY n 1 193 ASN n 1 194 VAL n 1 195 VAL n 1 196 ARG n 1 197 VAL n 1 198 VAL n 1 199 ASN n 1 200 THR n 1 201 ALA n 1 202 PRO n 1 203 VAL n 1 204 GLU n 1 205 PHE n 1 206 PRO n 1 207 LEU n 1 208 TYR n 1 209 ALA n 1 210 SER n 1 211 VAL n 1 212 ASP n 1 213 ALA n 1 214 TYR n 1 215 ARG n 1 216 VAL n 1 217 GLY n 1 218 GLY n 1 219 GLY n 1 220 GLY n 1 221 ASP n 1 222 TRP n 1 223 ALA n 1 224 ASP n 1 225 ASP n 1 226 GLY n 1 227 LEU n 1 228 MET n 1 229 ILE n 1 230 GLY n 1 231 ARG n 1 232 ALA n 1 233 PHE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 233 _entity_src_gen.gene_src_common_name 'Marine diatom, Cyclotella nana' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene THAPSDRAFT_7881 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thalassiosira pseudonana' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 35128 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 UNK 'L-peptide linking' . UNKNOWN ? 'C4 H9 N O2' 103.120 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 UNK 1 62 -6 UNK ALA A . n A 1 2 UNK 2 63 -5 UNK ALA A . n A 1 3 UNK 3 64 -4 UNK ALA A . n A 1 4 UNK 4 65 -3 UNK ALA A . n A 1 5 UNK 5 66 -2 UNK ALA A . n A 1 6 UNK 6 67 -1 UNK ALA A . n A 1 7 UNK 7 68 0 UNK ALA A . n A 1 8 TRP 8 69 1 TRP TRP A . n A 1 9 ASP 9 70 2 ASP ASP A . n A 1 10 ASN 10 71 3 ASN ASN A . n A 1 11 SER 11 72 4 SER SER A . n A 1 12 SER 12 73 5 SER SER A . n A 1 13 PRO 13 74 6 PRO PRO A . n A 1 14 VAL 14 75 7 VAL VAL A . n A 1 15 ILE 15 76 8 ILE ILE A . n A 1 16 VAL 16 77 9 VAL VAL A . n A 1 17 GLN 17 78 10 GLN GLN A . n A 1 18 GLY 18 79 11 GLY GLY A . n A 1 19 GLY 19 80 12 GLY GLY A . n A 1 20 SER 20 81 13 SER SER A . n A 1 21 LEU 21 82 14 LEU LEU A . n A 1 22 ARG 22 83 15 ARG ARG A . n A 1 23 THR 23 84 16 THR THR A . n A 1 24 TRP 24 85 17 TRP TRP A . n A 1 25 SER 25 86 18 SER SER A . n A 1 26 PHE 26 87 19 PHE PHE A . n A 1 27 ALA 27 88 20 ALA ALA A . n A 1 28 ASN 28 89 21 ASN ASN A . n A 1 29 PRO 29 90 22 PRO PRO A . n A 1 30 ALA 30 91 23 ALA ALA A . n A 1 31 ILE 31 92 24 ILE ILE A . n A 1 32 GLU 32 93 25 GLU GLU A . n A 1 33 SER 33 94 26 SER SER A . n A 1 34 VAL 34 95 27 VAL VAL A . n A 1 35 GLN 35 96 28 GLN GLN A . n A 1 36 VAL 36 97 29 VAL VAL A . n A 1 37 LEU 37 98 30 LEU LEU A . n A 1 38 LEU 38 99 31 LEU LEU A . n A 1 39 LYS 39 100 32 LYS LYS A . n A 1 40 THR 40 101 33 THR THR A . n A 1 41 GLU 41 102 34 GLU GLU A . n A 1 42 GLY 42 103 35 GLY GLY A . n A 1 43 ARG 43 104 36 ARG ARG A . n A 1 44 PRO 44 105 37 PRO PRO A . n A 1 45 LEU 45 106 38 LEU LEU A . n A 1 46 ASP 46 107 39 ASP ASP A . n A 1 47 ALA 47 108 40 ALA ALA A . n A 1 48 ASP 48 109 41 ASP ASP A . n A 1 49 VAL 49 110 42 VAL VAL A . n A 1 50 GLU 50 111 43 GLU GLU A . n A 1 51 LEU 51 112 44 LEU LEU A . n A 1 52 TRP 52 113 45 TRP TRP A . n A 1 53 GLN 53 114 46 GLN GLN A . n A 1 54 GLY 54 115 47 GLY GLY A . n A 1 55 PRO 55 116 48 PRO PRO A . n A 1 56 ASP 56 117 49 ASP ASP A . n A 1 57 ASN 57 118 50 ASN ASN A . n A 1 58 THR 58 119 51 THR THR A . n A 1 59 PRO 59 120 52 PRO PRO A . n A 1 60 HIS 60 121 53 HIS HIS A . n A 1 61 LYS 61 122 54 LYS LYS A . n A 1 62 MET 62 123 55 MET MET A . n A 1 63 ARG 63 124 56 ARG ARG A . n A 1 64 VAL 64 125 57 VAL VAL A . n A 1 65 TYR 65 126 58 TYR TYR A . n A 1 66 VAL 66 127 59 VAL VAL A . n A 1 67 GLU 67 128 60 GLU GLU A . n A 1 68 ASP 68 129 61 ASP ASP A . n A 1 69 GLY 69 130 62 GLY GLY A . n A 1 70 ALA 70 131 63 ALA ALA A . n A 1 71 LEU 71 132 64 LEU LEU A . n A 1 72 ARG 72 133 65 ARG ARG A . n A 1 73 THR 73 134 66 THR THR A . n A 1 74 PHE 74 135 67 PHE PHE A . n A 1 75 ASN 75 136 68 ASN ASN A . n A 1 76 ALA 76 137 69 ALA ALA A . n A 1 77 VAL 77 138 70 VAL VAL A . n A 1 78 ILE 78 139 71 ILE ILE A . n A 1 79 GLY 79 140 72 GLY GLY A . n A 1 80 THR 80 141 73 THR THR A . n A 1 81 PRO 81 142 74 PRO PRO A . n A 1 82 ARG 82 143 75 ARG ARG A . n A 1 83 GLY 83 144 76 GLY GLY A . n A 1 84 PRO 84 145 77 PRO PRO A . n A 1 85 ASN 85 146 78 ASN ASN A . n A 1 86 THR 86 147 79 THR THR A . n A 1 87 VAL 87 148 80 VAL VAL A . n A 1 88 ALA 88 149 81 ALA ALA A . n A 1 89 ILE 89 150 82 ILE ILE A . n A 1 90 ARG 90 151 83 ARG ARG A . n A 1 91 ASN 91 152 84 ASN ASN A . n A 1 92 ILE 92 153 85 ILE ILE A . n A 1 93 GLY 93 154 86 GLY GLY A . n A 1 94 GLN 94 155 87 GLN GLN A . n A 1 95 LEU 95 156 88 LEU LEU A . n A 1 96 GLU 96 157 89 GLU GLU A . n A 1 97 PHE 97 158 90 PHE PHE A . n A 1 98 PRO 98 159 91 PRO PRO A . n A 1 99 LEU 99 160 92 LEU LEU A . n A 1 100 ASP 100 161 93 ASP ASP A . n A 1 101 ALA 101 162 94 ALA ALA A . n A 1 102 VAL 102 163 95 VAL VAL A . n A 1 103 VAL 103 164 96 VAL VAL A . n A 1 104 ARG 104 165 97 ARG ARG A . n A 1 105 PRO 105 166 98 PRO PRO A . n A 1 106 ASP 106 167 99 ASP ASP A . n A 1 107 ARG 107 168 100 ARG ARG A . n A 1 108 ASP 108 169 101 ASP ASP A . n A 1 109 ASP 109 170 102 ASP ASP A . n A 1 110 GLY 110 171 103 GLY GLY A . n A 1 111 LEU 111 172 104 LEU LEU A . n A 1 112 ALA 112 173 105 ALA ALA A . n A 1 113 ALA 113 174 106 ALA ALA A . n A 1 114 GLY 114 175 107 GLY GLY A . n A 1 115 ILE 115 176 108 ILE ILE A . n A 1 116 ALA 116 177 109 ALA ALA A . n A 1 117 SER 117 178 110 SER SER A . n A 1 118 VAL 118 179 111 VAL VAL A . n A 1 119 ALA 119 180 112 ALA ALA A . n A 1 120 THR 120 181 113 THR THR A . n A 1 121 ARG 121 182 114 ARG ARG A . n A 1 122 SER 122 183 115 SER SER A . n A 1 123 GLU 123 184 116 GLU GLU A . n A 1 124 THR 124 185 117 THR THR A . n A 1 125 ILE 125 186 118 ILE ILE A . n A 1 126 GLN 126 187 119 GLN GLN A . n A 1 127 GLY 127 188 120 GLY GLY A . n A 1 128 GLY 128 189 121 GLY GLY A . n A 1 129 ALA 129 190 122 ALA ALA A . n A 1 130 LEU 130 191 123 LEU LEU A . n A 1 131 ARG 131 192 124 ARG ARG A . n A 1 132 THR 132 193 125 THR THR A . n A 1 133 TYR 133 194 126 TYR TYR A . n A 1 134 PRO 134 195 127 PRO PRO A . n A 1 135 PHE 135 196 128 PHE PHE A . n A 1 136 ASN 136 197 129 ASN ASN A . n A 1 137 PRO 137 198 130 PRO PRO A . n A 1 138 THR 138 199 131 THR THR A . n A 1 139 VAL 139 200 132 VAL VAL A . n A 1 140 ASP 140 201 133 ASP ASP A . n A 1 141 SER 141 202 134 SER SER A . n A 1 142 VAL 142 203 135 VAL VAL A . n A 1 143 ALA 143 204 136 ALA ALA A . n A 1 144 ILE 144 205 137 ILE ILE A . n A 1 145 ILE 145 206 138 ILE ILE A . n A 1 146 LEU 146 207 139 LEU LEU A . n A 1 147 LYS 147 208 140 LYS LYS A . n A 1 148 THR 148 209 141 THR THR A . n A 1 149 ASP 149 210 142 ASP ASP A . n A 1 150 GLY 150 211 143 GLY GLY A . n A 1 151 ARG 151 212 144 ARG ARG A . n A 1 152 PRO 152 213 145 PRO PRO A . n A 1 153 LEU 153 214 146 LEU LEU A . n A 1 154 ASN 154 215 147 ASN ASN A . n A 1 155 ALA 155 216 148 ALA ALA A . n A 1 156 ARG 156 217 149 ARG ARG A . n A 1 157 ILE 157 218 150 ILE ILE A . n A 1 158 GLU 158 219 151 GLU GLU A . n A 1 159 LEU 159 220 152 LEU LEU A . n A 1 160 LEU 160 221 153 LEU LEU A . n A 1 161 GLN 161 222 154 GLN GLN A . n A 1 162 GLY 162 223 155 GLY GLY A . n A 1 163 PRO 163 224 156 PRO PRO A . n A 1 164 ASN 164 225 157 ASN ASN A . n A 1 165 ASN 165 226 158 ASN ASN A . n A 1 166 ASN 166 227 159 ASN ASN A . n A 1 167 LYS 167 228 160 LYS LYS A . n A 1 168 GLN 168 229 161 GLN GLN A . n A 1 169 VAL 169 230 162 VAL VAL A . n A 1 170 VAL 170 231 163 VAL VAL A . n A 1 171 GLU 171 232 164 GLU GLU A . n A 1 172 LEU 172 233 165 LEU LEU A . n A 1 173 TYR 173 234 166 TYR TYR A . n A 1 174 THR 174 235 167 THR THR A . n A 1 175 GLU 175 236 168 GLU GLU A . n A 1 176 ASP 176 237 169 ASP ASP A . n A 1 177 GLY 177 238 170 GLY GLY A . n A 1 178 LEU 178 239 171 LEU LEU A . n A 1 179 ASP 179 240 172 ASP ASP A . n A 1 180 ARG 180 241 173 ARG ARG A . n A 1 181 PRO 181 242 174 PRO PRO A . n A 1 182 PHE 182 243 175 PHE PHE A . n A 1 183 PHE 183 244 176 PHE PHE A . n A 1 184 ALA 184 245 177 ALA ALA A . n A 1 185 ILE 185 246 178 ILE ILE A . n A 1 186 VAL 186 247 179 VAL VAL A . n A 1 187 GLU 187 248 180 GLU GLU A . n A 1 188 THR 188 249 181 THR THR A . n A 1 189 PRO 189 250 182 PRO PRO A . n A 1 190 GLY 190 251 183 GLY GLY A . n A 1 191 SER 191 252 184 SER SER A . n A 1 192 GLY 192 253 185 GLY GLY A . n A 1 193 ASN 193 254 186 ASN ASN A . n A 1 194 VAL 194 255 187 VAL VAL A . n A 1 195 VAL 195 256 188 VAL VAL A . n A 1 196 ARG 196 257 189 ARG ARG A . n A 1 197 VAL 197 258 190 VAL VAL A . n A 1 198 VAL 198 259 191 VAL VAL A . n A 1 199 ASN 199 260 192 ASN ASN A . n A 1 200 THR 200 261 193 THR THR A . n A 1 201 ALA 201 262 194 ALA ALA A . n A 1 202 PRO 202 263 195 PRO PRO A . n A 1 203 VAL 203 264 196 VAL VAL A . n A 1 204 GLU 204 265 197 GLU GLU A . n A 1 205 PHE 205 266 198 PHE PHE A . n A 1 206 PRO 206 267 199 PRO PRO A . n A 1 207 LEU 207 268 200 LEU LEU A . n A 1 208 TYR 208 269 201 TYR TYR A . n A 1 209 ALA 209 270 202 ALA ALA A . n A 1 210 SER 210 271 203 SER SER A . n A 1 211 VAL 211 272 204 VAL VAL A . n A 1 212 ASP 212 273 205 ASP ASP A . n A 1 213 ALA 213 274 206 ALA ALA A . n A 1 214 TYR 214 275 207 TYR TYR A . n A 1 215 ARG 215 276 208 ARG ARG A . n A 1 216 VAL 216 277 209 VAL VAL A . n A 1 217 GLY 217 278 210 GLY GLY A . n A 1 218 GLY 218 279 211 GLY GLY A . n A 1 219 GLY 219 280 212 GLY GLY A . n A 1 220 GLY 220 281 213 GLY GLY A . n A 1 221 ASP 221 282 214 ASP ASP A . n A 1 222 TRP 222 283 215 TRP TRP A . n A 1 223 ALA 223 284 216 ALA ALA A . n A 1 224 ASP 224 285 217 ASP ASP A . n A 1 225 ASP 225 286 218 ASP ASP A . n A 1 226 GLY 226 287 219 GLY GLY A . n A 1 227 LEU 227 288 220 LEU LEU A . n A 1 228 MET 228 289 221 MET MET A . n A 1 229 ILE 229 290 222 ILE ILE A . n A 1 230 GLY 230 291 223 GLY GLY A . n A 1 231 ARG 231 292 224 ARG ARG A . n A 1 232 ALA 232 293 225 ALA ALA A . n A 1 233 PHE 233 294 226 PHE PHE A . n B 1 1 UNK 1 62 -6 UNK ALA B . n B 1 2 UNK 2 63 -5 UNK ALA B . n B 1 3 UNK 3 64 -4 UNK ALA B . n B 1 4 UNK 4 65 -3 UNK ALA B . n B 1 5 UNK 5 66 -2 UNK ALA B . n B 1 6 UNK 6 67 -1 UNK ALA B . n B 1 7 UNK 7 68 0 UNK ALA B . n B 1 8 TRP 8 69 1 TRP TRP B . n B 1 9 ASP 9 70 2 ASP ASP B . n B 1 10 ASN 10 71 3 ASN ASN B . n B 1 11 SER 11 72 4 SER SER B . n B 1 12 SER 12 73 5 SER SER B . n B 1 13 PRO 13 74 6 PRO PRO B . n B 1 14 VAL 14 75 7 VAL VAL B . n B 1 15 ILE 15 76 8 ILE ILE B . n B 1 16 VAL 16 77 9 VAL VAL B . n B 1 17 GLN 17 78 10 GLN GLN B . n B 1 18 GLY 18 79 11 GLY GLY B . n B 1 19 GLY 19 80 12 GLY GLY B . n B 1 20 SER 20 81 13 SER SER B . n B 1 21 LEU 21 82 14 LEU LEU B . n B 1 22 ARG 22 83 15 ARG ARG B . n B 1 23 THR 23 84 16 THR THR B . n B 1 24 TRP 24 85 17 TRP TRP B . n B 1 25 SER 25 86 18 SER SER B . n B 1 26 PHE 26 87 19 PHE PHE B . n B 1 27 ALA 27 88 20 ALA ALA B . n B 1 28 ASN 28 89 21 ASN ASN B . n B 1 29 PRO 29 90 22 PRO PRO B . n B 1 30 ALA 30 91 23 ALA ALA B . n B 1 31 ILE 31 92 24 ILE ILE B . n B 1 32 GLU 32 93 25 GLU GLU B . n B 1 33 SER 33 94 26 SER SER B . n B 1 34 VAL 34 95 27 VAL VAL B . n B 1 35 GLN 35 96 28 GLN GLN B . n B 1 36 VAL 36 97 29 VAL VAL B . n B 1 37 LEU 37 98 30 LEU LEU B . n B 1 38 LEU 38 99 31 LEU LEU B . n B 1 39 LYS 39 100 32 LYS LYS B . n B 1 40 THR 40 101 33 THR THR B . n B 1 41 GLU 41 102 34 GLU GLU B . n B 1 42 GLY 42 103 35 GLY GLY B . n B 1 43 ARG 43 104 36 ARG ARG B . n B 1 44 PRO 44 105 37 PRO PRO B . n B 1 45 LEU 45 106 38 LEU LEU B . n B 1 46 ASP 46 107 39 ASP ASP B . n B 1 47 ALA 47 108 40 ALA ALA B . n B 1 48 ASP 48 109 41 ASP ASP B . n B 1 49 VAL 49 110 42 VAL VAL B . n B 1 50 GLU 50 111 43 GLU GLU B . n B 1 51 LEU 51 112 44 LEU LEU B . n B 1 52 TRP 52 113 45 TRP TRP B . n B 1 53 GLN 53 114 46 GLN GLN B . n B 1 54 GLY 54 115 47 GLY GLY B . n B 1 55 PRO 55 116 48 PRO PRO B . n B 1 56 ASP 56 117 49 ASP ASP B . n B 1 57 ASN 57 118 50 ASN ASN B . n B 1 58 THR 58 119 51 THR THR B . n B 1 59 PRO 59 120 52 PRO PRO B . n B 1 60 HIS 60 121 53 HIS HIS B . n B 1 61 LYS 61 122 54 LYS LYS B . n B 1 62 MET 62 123 55 MET MET B . n B 1 63 ARG 63 124 56 ARG ARG B . n B 1 64 VAL 64 125 57 VAL VAL B . n B 1 65 TYR 65 126 58 TYR TYR B . n B 1 66 VAL 66 127 59 VAL VAL B . n B 1 67 GLU 67 128 60 GLU GLU B . n B 1 68 ASP 68 129 61 ASP ASP B . n B 1 69 GLY 69 130 62 GLY GLY B . n B 1 70 ALA 70 131 63 ALA ALA B . n B 1 71 LEU 71 132 64 LEU LEU B . n B 1 72 ARG 72 133 65 ARG ARG B . n B 1 73 THR 73 134 66 THR THR B . n B 1 74 PHE 74 135 67 PHE PHE B . n B 1 75 ASN 75 136 68 ASN ASN B . n B 1 76 ALA 76 137 69 ALA ALA B . n B 1 77 VAL 77 138 70 VAL VAL B . n B 1 78 ILE 78 139 71 ILE ILE B . n B 1 79 GLY 79 140 72 GLY GLY B . n B 1 80 THR 80 141 73 THR THR B . n B 1 81 PRO 81 142 74 PRO PRO B . n B 1 82 ARG 82 143 75 ARG ARG B . n B 1 83 GLY 83 144 76 GLY GLY B . n B 1 84 PRO 84 145 77 PRO PRO B . n B 1 85 ASN 85 146 78 ASN ASN B . n B 1 86 THR 86 147 79 THR THR B . n B 1 87 VAL 87 148 80 VAL VAL B . n B 1 88 ALA 88 149 81 ALA ALA B . n B 1 89 ILE 89 150 82 ILE ILE B . n B 1 90 ARG 90 151 83 ARG ARG B . n B 1 91 ASN 91 152 84 ASN ASN B . n B 1 92 ILE 92 153 85 ILE ILE B . n B 1 93 GLY 93 154 86 GLY GLY B . n B 1 94 GLN 94 155 87 GLN GLN B . n B 1 95 LEU 95 156 88 LEU LEU B . n B 1 96 GLU 96 157 89 GLU GLU B . n B 1 97 PHE 97 158 90 PHE PHE B . n B 1 98 PRO 98 159 91 PRO PRO B . n B 1 99 LEU 99 160 92 LEU LEU B . n B 1 100 ASP 100 161 93 ASP ASP B . n B 1 101 ALA 101 162 94 ALA ALA B . n B 1 102 VAL 102 163 95 VAL VAL B . n B 1 103 VAL 103 164 96 VAL VAL B . n B 1 104 ARG 104 165 97 ARG ARG B . n B 1 105 PRO 105 166 98 PRO PRO B . n B 1 106 ASP 106 167 99 ASP ASP B . n B 1 107 ARG 107 168 100 ARG ARG B . n B 1 108 ASP 108 169 101 ASP ASP B . n B 1 109 ASP 109 170 102 ASP ASP B . n B 1 110 GLY 110 171 103 GLY GLY B . n B 1 111 LEU 111 172 104 LEU LEU B . n B 1 112 ALA 112 173 105 ALA ALA B . n B 1 113 ALA 113 174 106 ALA ALA B . n B 1 114 GLY 114 175 107 GLY GLY B . n B 1 115 ILE 115 176 108 ILE ILE B . n B 1 116 ALA 116 177 109 ALA ALA B . n B 1 117 SER 117 178 110 SER SER B . n B 1 118 VAL 118 179 111 VAL VAL B . n B 1 119 ALA 119 180 112 ALA ALA B . n B 1 120 THR 120 181 113 THR THR B . n B 1 121 ARG 121 182 114 ARG ARG B . n B 1 122 SER 122 183 115 SER SER B . n B 1 123 GLU 123 184 116 GLU GLU B . n B 1 124 THR 124 185 117 THR THR B . n B 1 125 ILE 125 186 118 ILE ILE B . n B 1 126 GLN 126 187 119 GLN GLN B . n B 1 127 GLY 127 188 120 GLY GLY B . n B 1 128 GLY 128 189 121 GLY GLY B . n B 1 129 ALA 129 190 122 ALA ALA B . n B 1 130 LEU 130 191 123 LEU LEU B . n B 1 131 ARG 131 192 124 ARG ARG B . n B 1 132 THR 132 193 125 THR THR B . n B 1 133 TYR 133 194 126 TYR TYR B . n B 1 134 PRO 134 195 127 PRO PRO B . n B 1 135 PHE 135 196 128 PHE PHE B . n B 1 136 ASN 136 197 129 ASN ASN B . n B 1 137 PRO 137 198 130 PRO PRO B . n B 1 138 THR 138 199 131 THR THR B . n B 1 139 VAL 139 200 132 VAL VAL B . n B 1 140 ASP 140 201 133 ASP ASP B . n B 1 141 SER 141 202 134 SER SER B . n B 1 142 VAL 142 203 135 VAL VAL B . n B 1 143 ALA 143 204 136 ALA ALA B . n B 1 144 ILE 144 205 137 ILE ILE B . n B 1 145 ILE 145 206 138 ILE ILE B . n B 1 146 LEU 146 207 139 LEU LEU B . n B 1 147 LYS 147 208 140 LYS LYS B . n B 1 148 THR 148 209 141 THR THR B . n B 1 149 ASP 149 210 142 ASP ASP B . n B 1 150 GLY 150 211 143 GLY GLY B . n B 1 151 ARG 151 212 144 ARG ARG B . n B 1 152 PRO 152 213 145 PRO PRO B . n B 1 153 LEU 153 214 146 LEU LEU B . n B 1 154 ASN 154 215 147 ASN ASN B . n B 1 155 ALA 155 216 148 ALA ALA B . n B 1 156 ARG 156 217 149 ARG ARG B . n B 1 157 ILE 157 218 150 ILE ILE B . n B 1 158 GLU 158 219 151 GLU GLU B . n B 1 159 LEU 159 220 152 LEU LEU B . n B 1 160 LEU 160 221 153 LEU LEU B . n B 1 161 GLN 161 222 154 GLN GLN B . n B 1 162 GLY 162 223 155 GLY GLY B . n B 1 163 PRO 163 224 156 PRO PRO B . n B 1 164 ASN 164 225 157 ASN ASN B . n B 1 165 ASN 165 226 158 ASN ASN B . n B 1 166 ASN 166 227 159 ASN ASN B . n B 1 167 LYS 167 228 160 LYS LYS B . n B 1 168 GLN 168 229 161 GLN GLN B . n B 1 169 VAL 169 230 162 VAL VAL B . n B 1 170 VAL 170 231 163 VAL VAL B . n B 1 171 GLU 171 232 164 GLU GLU B . n B 1 172 LEU 172 233 165 LEU LEU B . n B 1 173 TYR 173 234 166 TYR TYR B . n B 1 174 THR 174 235 167 THR THR B . n B 1 175 GLU 175 236 168 GLU GLU B . n B 1 176 ASP 176 237 169 ASP ASP B . n B 1 177 GLY 177 238 170 GLY GLY B . n B 1 178 LEU 178 239 171 LEU LEU B . n B 1 179 ASP 179 240 172 ASP ASP B . n B 1 180 ARG 180 241 173 ARG ARG B . n B 1 181 PRO 181 242 174 PRO PRO B . n B 1 182 PHE 182 243 175 PHE PHE B . n B 1 183 PHE 183 244 176 PHE PHE B . n B 1 184 ALA 184 245 177 ALA ALA B . n B 1 185 ILE 185 246 178 ILE ILE B . n B 1 186 VAL 186 247 179 VAL VAL B . n B 1 187 GLU 187 248 180 GLU GLU B . n B 1 188 THR 188 249 181 THR THR B . n B 1 189 PRO 189 250 182 PRO PRO B . n B 1 190 GLY 190 251 183 GLY GLY B . n B 1 191 SER 191 252 184 SER SER B . n B 1 192 GLY 192 253 185 GLY GLY B . n B 1 193 ASN 193 254 186 ASN ASN B . n B 1 194 VAL 194 255 187 VAL VAL B . n B 1 195 VAL 195 256 188 VAL VAL B . n B 1 196 ARG 196 257 189 ARG ARG B . n B 1 197 VAL 197 258 190 VAL VAL B . n B 1 198 VAL 198 259 191 VAL VAL B . n B 1 199 ASN 199 260 192 ASN ASN B . n B 1 200 THR 200 261 193 THR THR B . n B 1 201 ALA 201 262 194 ALA ALA B . n B 1 202 PRO 202 263 195 PRO PRO B . n B 1 203 VAL 203 264 196 VAL VAL B . n B 1 204 GLU 204 265 197 GLU GLU B . n B 1 205 PHE 205 266 198 PHE PHE B . n B 1 206 PRO 206 267 199 PRO PRO B . n B 1 207 LEU 207 268 200 LEU LEU B . n B 1 208 TYR 208 269 201 TYR TYR B . n B 1 209 ALA 209 270 202 ALA ALA B . n B 1 210 SER 210 271 203 SER SER B . n B 1 211 VAL 211 272 204 VAL VAL B . n B 1 212 ASP 212 273 205 ASP ASP B . n B 1 213 ALA 213 274 206 ALA ALA B . n B 1 214 TYR 214 275 207 TYR TYR B . n B 1 215 ARG 215 276 208 ARG ARG B . n B 1 216 VAL 216 277 209 VAL VAL B . n B 1 217 GLY 217 278 210 GLY GLY B . n B 1 218 GLY 218 279 211 GLY GLY B . n B 1 219 GLY 219 280 212 GLY GLY B . n B 1 220 GLY 220 281 213 GLY GLY B . n B 1 221 ASP 221 282 214 ASP ASP B . n B 1 222 TRP 222 283 215 TRP TRP B . n B 1 223 ALA 223 284 216 ALA ALA B . n B 1 224 ASP 224 285 217 ASP ASP B . n B 1 225 ASP 225 286 218 ASP ASP B . n B 1 226 GLY 226 287 219 GLY GLY B . n B 1 227 LEU 227 288 220 LEU LEU B . n B 1 228 MET 228 289 221 MET MET B . n B 1 229 ILE 229 290 222 ILE ILE B . n B 1 230 GLY 230 291 223 GLY GLY B . n B 1 231 ARG 231 292 224 ARG ARG B . n B 1 232 ALA 232 293 225 ALA ALA B . n B 1 233 PHE 233 294 226 PHE PHE B . n # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8WQP _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8WQP _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8WQP _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.entry_id 8WQP _refine.pdbx_diffrn_id ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high . _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.002 ? 3588 ? f_bond_d ? ? 'ELECTRON MICROSCOPY' ? 0.505 ? 4908 ? f_angle_d ? ? 'ELECTRON MICROSCOPY' ? 4.266 ? 506 ? f_dihedral_angle_d ? ? 'ELECTRON MICROSCOPY' ? 0.048 ? 556 ? f_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.003 ? 662 ? f_plane_restr ? ? # _struct.entry_id 8WQP _struct.title 'Cryo-EM structure of T. pseudonana PyShell helical tube' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8WQP _struct_keywords.text 'marine diatoms, photosynthesis, CO2-concentrating mechanism, pyrenoids, PLANT PROTEIN' _struct_keywords.pdbx_keywords 'PLANT PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code B8C7S8_THAPS _struct_ref.pdbx_db_accession B8C7S8 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;WDNSSPVIVQGGSLRTWSFANPAIESVQVLLKTEGRPLDADVELWQGPDNTPHKMRVYVEDGALRTFNAVIGTPRGPNTV AIRNIGQLEFPLDAVVRPDRDDGLAAGIASVATRSETIQGGALRTYPFNPTVDSVAIILKTDGRPLNARIELLQGPNNNK QVVELYTEDGLDRPFFAIVETPGSGNVVRVVNTAPVEFPLYASVDAYRVGGGGDWADDGLMIGRAF ; _struct_ref.pdbx_align_begin 69 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8WQP A 8 ? 233 ? B8C7S8 69 ? 294 ? 69 294 2 1 8WQP B 8 ? 233 ? B8C7S8 69 ? 294 ? 69 294 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 8WQP UNK A 1 ? UNP B8C7S8 ? ? 'expression tag' 62 1 1 8WQP UNK A 2 ? UNP B8C7S8 ? ? 'expression tag' 63 2 1 8WQP UNK A 3 ? UNP B8C7S8 ? ? 'expression tag' 64 3 1 8WQP UNK A 4 ? UNP B8C7S8 ? ? 'expression tag' 65 4 1 8WQP UNK A 5 ? UNP B8C7S8 ? ? 'expression tag' 66 5 1 8WQP UNK A 6 ? UNP B8C7S8 ? ? 'expression tag' 67 6 1 8WQP UNK A 7 ? UNP B8C7S8 ? ? 'expression tag' 68 7 2 8WQP UNK B 1 ? UNP B8C7S8 ? ? 'expression tag' 62 8 2 8WQP UNK B 2 ? UNP B8C7S8 ? ? 'expression tag' 63 9 2 8WQP UNK B 3 ? UNP B8C7S8 ? ? 'expression tag' 64 10 2 8WQP UNK B 4 ? UNP B8C7S8 ? ? 'expression tag' 65 11 2 8WQP UNK B 5 ? UNP B8C7S8 ? ? 'expression tag' 66 12 2 8WQP UNK B 6 ? UNP B8C7S8 ? ? 'expression tag' 67 13 2 8WQP UNK B 7 ? UNP B8C7S8 ? ? 'expression tag' 68 14 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 UNK A 3 ? ASN A 10 ? UNK A 64 ASN A 71 1 ? 8 HELX_P HELX_P2 AA2 GLY A 110 ? ALA A 119 ? GLY A 171 ALA A 180 1 ? 10 HELX_P HELX_P3 AA3 UNK B 3 ? ASN B 10 ? UNK B 64 ASN B 71 1 ? 8 HELX_P HELX_P4 AA4 GLY B 110 ? ALA B 119 ? GLY B 171 ALA B 180 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 8 ? AA2 ? 8 ? AA3 ? 8 ? AA4 ? 8 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA1 5 6 ? anti-parallel AA1 6 7 ? anti-parallel AA1 7 8 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA2 5 6 ? anti-parallel AA2 6 7 ? anti-parallel AA2 7 8 ? anti-parallel AA3 1 2 ? anti-parallel AA3 2 3 ? anti-parallel AA3 3 4 ? anti-parallel AA3 4 5 ? anti-parallel AA3 5 6 ? anti-parallel AA3 6 7 ? anti-parallel AA3 7 8 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel AA4 3 4 ? anti-parallel AA4 4 5 ? anti-parallel AA4 5 6 ? anti-parallel AA4 6 7 ? anti-parallel AA4 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL A 14 ? VAL A 16 ? VAL A 75 VAL A 77 AA1 2 LEU A 99 ? PRO A 105 ? LEU A 160 PRO A 166 AA1 3 SER A 33 ? LYS A 39 ? SER A 94 LYS A 100 AA1 4 PHE A 74 ? GLY A 79 ? PHE A 135 GLY A 140 AA1 5 PHE A 182 ? GLU A 187 ? PHE A 243 GLU A 248 AA1 6 VAL A 139 ? LYS A 147 ? VAL A 200 LYS A 208 AA1 7 LEU A 207 ? VAL A 216 ? LEU A 268 VAL A 277 AA1 8 GLU A 123 ? ILE A 125 ? GLU A 184 ILE A 186 AA2 1 LEU A 21 ? PHE A 26 ? LEU A 82 PHE A 87 AA2 2 ASN A 85 ? ASN A 91 ? ASN A 146 ASN A 152 AA2 3 LEU A 45 ? TRP A 52 ? LEU A 106 TRP A 113 AA2 4 HIS A 60 ? VAL A 66 ? HIS A 121 VAL A 127 AA2 5 ASN A 166 ? THR A 174 ? ASN A 227 THR A 235 AA2 6 LEU A 153 ? LEU A 160 ? LEU A 214 LEU A 221 AA2 7 VAL A 194 ? ASN A 199 ? VAL A 255 ASN A 260 AA2 8 LEU A 130 ? PRO A 134 ? LEU A 191 PRO A 195 AA3 1 VAL B 14 ? VAL B 16 ? VAL B 75 VAL B 77 AA3 2 LEU B 99 ? PRO B 105 ? LEU B 160 PRO B 166 AA3 3 SER B 33 ? LYS B 39 ? SER B 94 LYS B 100 AA3 4 PHE B 74 ? GLY B 79 ? PHE B 135 GLY B 140 AA3 5 PHE B 182 ? GLU B 187 ? PHE B 243 GLU B 248 AA3 6 VAL B 139 ? LYS B 147 ? VAL B 200 LYS B 208 AA3 7 LEU B 207 ? VAL B 216 ? LEU B 268 VAL B 277 AA3 8 GLU B 123 ? ILE B 125 ? GLU B 184 ILE B 186 AA4 1 LEU B 21 ? PHE B 26 ? LEU B 82 PHE B 87 AA4 2 ASN B 85 ? ASN B 91 ? ASN B 146 ASN B 152 AA4 3 LEU B 45 ? TRP B 52 ? LEU B 106 TRP B 113 AA4 4 HIS B 60 ? VAL B 66 ? HIS B 121 VAL B 127 AA4 5 ASN B 166 ? THR B 174 ? ASN B 227 THR B 235 AA4 6 LEU B 153 ? LEU B 160 ? LEU B 214 LEU B 221 AA4 7 VAL B 194 ? ASN B 199 ? VAL B 255 ASN B 260 AA4 8 LEU B 130 ? PRO B 134 ? LEU B 191 PRO B 195 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N VAL A 16 ? N VAL A 77 O LEU A 99 ? O LEU A 160 AA1 2 3 O ASP A 100 ? O ASP A 161 N LYS A 39 ? N LYS A 100 AA1 3 4 N VAL A 34 ? N VAL A 95 O ILE A 78 ? O ILE A 139 AA1 4 5 N VAL A 77 ? N VAL A 138 O PHE A 183 ? O PHE A 244 AA1 5 6 O ALA A 184 ? O ALA A 245 N ILE A 144 ? N ILE A 205 AA1 6 7 N ASP A 140 ? N ASP A 201 O ARG A 215 ? O ARG A 276 AA1 7 8 O ALA A 209 ? O ALA A 270 N GLU A 123 ? N GLU A 184 AA2 1 2 N TRP A 24 ? N TRP A 85 O VAL A 87 ? O VAL A 148 AA2 2 3 O ARG A 90 ? O ARG A 151 N ASP A 48 ? N ASP A 109 AA2 3 4 N LEU A 51 ? N LEU A 112 O HIS A 60 ? O HIS A 121 AA2 4 5 N ARG A 63 ? N ARG A 124 O GLU A 171 ? O GLU A 232 AA2 5 6 O LYS A 167 ? O LYS A 228 N LEU A 159 ? N LEU A 220 AA2 6 7 N GLU A 158 ? N GLU A 219 O ARG A 196 ? O ARG A 257 AA2 7 8 O VAL A 197 ? O VAL A 258 N ARG A 131 ? N ARG A 192 AA3 1 2 N VAL B 16 ? N VAL B 77 O LEU B 99 ? O LEU B 160 AA3 2 3 O VAL B 102 ? O VAL B 163 N LEU B 37 ? N LEU B 98 AA3 3 4 N VAL B 36 ? N VAL B 97 O ALA B 76 ? O ALA B 137 AA3 4 5 N VAL B 77 ? N VAL B 138 O PHE B 183 ? O PHE B 244 AA3 5 6 O VAL B 186 ? O VAL B 247 N VAL B 142 ? N VAL B 203 AA3 6 7 N ALA B 143 ? N ALA B 204 O ASP B 212 ? O ASP B 273 AA3 7 8 O ALA B 209 ? O ALA B 270 N GLU B 123 ? N GLU B 184 AA4 1 2 N PHE B 26 ? N PHE B 87 O ASN B 85 ? O ASN B 146 AA4 2 3 O ARG B 90 ? O ARG B 151 N ASP B 48 ? N ASP B 109 AA4 3 4 N LEU B 45 ? N LEU B 106 O VAL B 66 ? O VAL B 127 AA4 4 5 N ARG B 63 ? N ARG B 124 O GLU B 171 ? O GLU B 232 AA4 5 6 O LYS B 167 ? O LYS B 228 N LEU B 159 ? N LEU B 220 AA4 6 7 N GLU B 158 ? N GLU B 219 O ARG B 196 ? O ARG B 257 AA4 7 8 O VAL B 197 ? O VAL B 258 N ARG B 131 ? N ARG B 192 # _pdbx_entry_details.entry_id 8WQP _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O B TRP 85 ? ? OG1 B THR 147 ? ? 2.16 2 1 OD1 A ASN 197 ? ? OG1 A THR 199 ? ? 2.17 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 102 ? ? -94.46 51.56 2 1 ASP A 117 ? ? -141.24 26.15 3 1 GLN A 155 ? ? -69.12 -179.03 4 1 ASN B 71 ? ? -98.70 35.42 5 1 GLU B 102 ? ? -95.12 51.37 6 1 ASP B 170 ? ? -99.55 35.46 7 1 GLU B 265 ? ? -94.63 30.74 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 8WQP _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space REAL _em_3d_fitting.ref_protocol 'AB INITIO MODEL' # _em_3d_fitting_list.id 1 _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.pdb_entry_id . _em_3d_fitting_list.pdb_chain_id . _em_3d_fitting_list.pdb_chain_residue_range . _em_3d_fitting_list.details ? _em_3d_fitting_list.chain_id ? _em_3d_fitting_list.chain_residue_range ? _em_3d_fitting_list.source_name AlphaFold _em_3d_fitting_list.type 'in silico model' _em_3d_fitting_list.accession_code ? _em_3d_fitting_list.initial_refinement_model_id ? # _em_3d_reconstruction.entry_id 8WQP _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm 'BACK PROJECTION' _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 2.4 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 322887 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type HELICAL # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 8.0 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'in vitro tube structure of T. pseudonana PyShell' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 8WQP _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 0.01 _em_imaging.nominal_defocus_min 500 _em_imaging.nominal_defocus_max 1700 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification 81000 _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure 'COMA FREE' _em_imaging.c2_aperture_diameter 50 _em_imaging.specimen_id 1 _em_imaging.cryogen NITROGEN # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 200 _em_sample_support.grid_type 'Quantifoil R1.2/1.3' _em_sample_support.details ? _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_vitrification.entry_id 8WQP _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 100 _em_vitrification.temp ? _em_vitrification.chamber_temperature 277 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 8WQP _em_experiment.id 1 _em_experiment.reconstruction_method HELICAL _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 GLN N N N N 74 GLN CA C N S 75 GLN C C N N 76 GLN O O N N 77 GLN CB C N N 78 GLN CG C N N 79 GLN CD C N N 80 GLN OE1 O N N 81 GLN NE2 N N N 82 GLN OXT O N N 83 GLN H H N N 84 GLN H2 H N N 85 GLN HA H N N 86 GLN HB2 H N N 87 GLN HB3 H N N 88 GLN HG2 H N N 89 GLN HG3 H N N 90 GLN HE21 H N N 91 GLN HE22 H N N 92 GLN HXT H N N 93 GLU N N N N 94 GLU CA C N S 95 GLU C C N N 96 GLU O O N N 97 GLU CB C N N 98 GLU CG C N N 99 GLU CD C N N 100 GLU OE1 O N N 101 GLU OE2 O N N 102 GLU OXT O N N 103 GLU H H N N 104 GLU H2 H N N 105 GLU HA H N N 106 GLU HB2 H N N 107 GLU HB3 H N N 108 GLU HG2 H N N 109 GLU HG3 H N N 110 GLU HE2 H N N 111 GLU HXT H N N 112 GLY N N N N 113 GLY CA C N N 114 GLY C C N N 115 GLY O O N N 116 GLY OXT O N N 117 GLY H H N N 118 GLY H2 H N N 119 GLY HA2 H N N 120 GLY HA3 H N N 121 GLY HXT H N N 122 HIS N N N N 123 HIS CA C N S 124 HIS C C N N 125 HIS O O N N 126 HIS CB C N N 127 HIS CG C Y N 128 HIS ND1 N Y N 129 HIS CD2 C Y N 130 HIS CE1 C Y N 131 HIS NE2 N Y N 132 HIS OXT O N N 133 HIS H H N N 134 HIS H2 H N N 135 HIS HA H N N 136 HIS HB2 H N N 137 HIS HB3 H N N 138 HIS HD1 H N N 139 HIS HD2 H N N 140 HIS HE1 H N N 141 HIS HE2 H N N 142 HIS HXT H N N 143 ILE N N N N 144 ILE CA C N S 145 ILE C C N N 146 ILE O O N N 147 ILE CB C N S 148 ILE CG1 C N N 149 ILE CG2 C N N 150 ILE CD1 C N N 151 ILE OXT O N N 152 ILE H H N N 153 ILE H2 H N N 154 ILE HA H N N 155 ILE HB H N N 156 ILE HG12 H N N 157 ILE HG13 H N N 158 ILE HG21 H N N 159 ILE HG22 H N N 160 ILE HG23 H N N 161 ILE HD11 H N N 162 ILE HD12 H N N 163 ILE HD13 H N N 164 ILE HXT H N N 165 LEU N N N N 166 LEU CA C N S 167 LEU C C N N 168 LEU O O N N 169 LEU CB C N N 170 LEU CG C N N 171 LEU CD1 C N N 172 LEU CD2 C N N 173 LEU OXT O N N 174 LEU H H N N 175 LEU H2 H N N 176 LEU HA H N N 177 LEU HB2 H N N 178 LEU HB3 H N N 179 LEU HG H N N 180 LEU HD11 H N N 181 LEU HD12 H N N 182 LEU HD13 H N N 183 LEU HD21 H N N 184 LEU HD22 H N N 185 LEU HD23 H N N 186 LEU HXT H N N 187 LYS N N N N 188 LYS CA C N S 189 LYS C C N N 190 LYS O O N N 191 LYS CB C N N 192 LYS CG C N N 193 LYS CD C N N 194 LYS CE C N N 195 LYS NZ N N N 196 LYS OXT O N N 197 LYS H H N N 198 LYS H2 H N N 199 LYS HA H N N 200 LYS HB2 H N N 201 LYS HB3 H N N 202 LYS HG2 H N N 203 LYS HG3 H N N 204 LYS HD2 H N N 205 LYS HD3 H N N 206 LYS HE2 H N N 207 LYS HE3 H N N 208 LYS HZ1 H N N 209 LYS HZ2 H N N 210 LYS HZ3 H N N 211 LYS HXT H N N 212 MET N N N N 213 MET CA C N S 214 MET C C N N 215 MET O O N N 216 MET CB C N N 217 MET CG C N N 218 MET SD S N N 219 MET CE C N N 220 MET OXT O N N 221 MET H H N N 222 MET H2 H N N 223 MET HA H N N 224 MET HB2 H N N 225 MET HB3 H N N 226 MET HG2 H N N 227 MET HG3 H N N 228 MET HE1 H N N 229 MET HE2 H N N 230 MET HE3 H N N 231 MET HXT H N N 232 PHE N N N N 233 PHE CA C N S 234 PHE C C N N 235 PHE O O N N 236 PHE CB C N N 237 PHE CG C Y N 238 PHE CD1 C Y N 239 PHE CD2 C Y N 240 PHE CE1 C Y N 241 PHE CE2 C Y N 242 PHE CZ C Y N 243 PHE OXT O N N 244 PHE H H N N 245 PHE H2 H N N 246 PHE HA H N N 247 PHE HB2 H N N 248 PHE HB3 H N N 249 PHE HD1 H N N 250 PHE HD2 H N N 251 PHE HE1 H N N 252 PHE HE2 H N N 253 PHE HZ H N N 254 PHE HXT H N N 255 PRO N N N N 256 PRO CA C N S 257 PRO C C N N 258 PRO O O N N 259 PRO CB C N N 260 PRO CG C N N 261 PRO CD C N N 262 PRO OXT O N N 263 PRO H H N N 264 PRO HA H N N 265 PRO HB2 H N N 266 PRO HB3 H N N 267 PRO HG2 H N N 268 PRO HG3 H N N 269 PRO HD2 H N N 270 PRO HD3 H N N 271 PRO HXT H N N 272 SER N N N N 273 SER CA C N S 274 SER C C N N 275 SER O O N N 276 SER CB C N N 277 SER OG O N N 278 SER OXT O N N 279 SER H H N N 280 SER H2 H N N 281 SER HA H N N 282 SER HB2 H N N 283 SER HB3 H N N 284 SER HG H N N 285 SER HXT H N N 286 THR N N N N 287 THR CA C N S 288 THR C C N N 289 THR O O N N 290 THR CB C N R 291 THR OG1 O N N 292 THR CG2 C N N 293 THR OXT O N N 294 THR H H N N 295 THR H2 H N N 296 THR HA H N N 297 THR HB H N N 298 THR HG1 H N N 299 THR HG21 H N N 300 THR HG22 H N N 301 THR HG23 H N N 302 THR HXT H N N 303 TRP N N N N 304 TRP CA C N S 305 TRP C C N N 306 TRP O O N N 307 TRP CB C N N 308 TRP CG C Y N 309 TRP CD1 C Y N 310 TRP CD2 C Y N 311 TRP NE1 N Y N 312 TRP CE2 C Y N 313 TRP CE3 C Y N 314 TRP CZ2 C Y N 315 TRP CZ3 C Y N 316 TRP CH2 C Y N 317 TRP OXT O N N 318 TRP H H N N 319 TRP H2 H N N 320 TRP HA H N N 321 TRP HB2 H N N 322 TRP HB3 H N N 323 TRP HD1 H N N 324 TRP HE1 H N N 325 TRP HE3 H N N 326 TRP HZ2 H N N 327 TRP HZ3 H N N 328 TRP HH2 H N N 329 TRP HXT H N N 330 TYR N N N N 331 TYR CA C N S 332 TYR C C N N 333 TYR O O N N 334 TYR CB C N N 335 TYR CG C Y N 336 TYR CD1 C Y N 337 TYR CD2 C Y N 338 TYR CE1 C Y N 339 TYR CE2 C Y N 340 TYR CZ C Y N 341 TYR OH O N N 342 TYR OXT O N N 343 TYR H H N N 344 TYR H2 H N N 345 TYR HA H N N 346 TYR HB2 H N N 347 TYR HB3 H N N 348 TYR HD1 H N N 349 TYR HD2 H N N 350 TYR HE1 H N N 351 TYR HE2 H N N 352 TYR HH H N N 353 TYR HXT H N N 354 VAL N N N N 355 VAL CA C N S 356 VAL C C N N 357 VAL O O N N 358 VAL CB C N N 359 VAL CG1 C N N 360 VAL CG2 C N N 361 VAL OXT O N N 362 VAL H H N N 363 VAL H2 H N N 364 VAL HA H N N 365 VAL HB H N N 366 VAL HG11 H N N 367 VAL HG12 H N N 368 VAL HG13 H N N 369 VAL HG21 H N N 370 VAL HG22 H N N 371 VAL HG23 H N N 372 VAL HXT H N N 373 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 GLN N CA sing N N 70 GLN N H sing N N 71 GLN N H2 sing N N 72 GLN CA C sing N N 73 GLN CA CB sing N N 74 GLN CA HA sing N N 75 GLN C O doub N N 76 GLN C OXT sing N N 77 GLN CB CG sing N N 78 GLN CB HB2 sing N N 79 GLN CB HB3 sing N N 80 GLN CG CD sing N N 81 GLN CG HG2 sing N N 82 GLN CG HG3 sing N N 83 GLN CD OE1 doub N N 84 GLN CD NE2 sing N N 85 GLN NE2 HE21 sing N N 86 GLN NE2 HE22 sing N N 87 GLN OXT HXT sing N N 88 GLU N CA sing N N 89 GLU N H sing N N 90 GLU N H2 sing N N 91 GLU CA C sing N N 92 GLU CA CB sing N N 93 GLU CA HA sing N N 94 GLU C O doub N N 95 GLU C OXT sing N N 96 GLU CB CG sing N N 97 GLU CB HB2 sing N N 98 GLU CB HB3 sing N N 99 GLU CG CD sing N N 100 GLU CG HG2 sing N N 101 GLU CG HG3 sing N N 102 GLU CD OE1 doub N N 103 GLU CD OE2 sing N N 104 GLU OE2 HE2 sing N N 105 GLU OXT HXT sing N N 106 GLY N CA sing N N 107 GLY N H sing N N 108 GLY N H2 sing N N 109 GLY CA C sing N N 110 GLY CA HA2 sing N N 111 GLY CA HA3 sing N N 112 GLY C O doub N N 113 GLY C OXT sing N N 114 GLY OXT HXT sing N N 115 HIS N CA sing N N 116 HIS N H sing N N 117 HIS N H2 sing N N 118 HIS CA C sing N N 119 HIS CA CB sing N N 120 HIS CA HA sing N N 121 HIS C O doub N N 122 HIS C OXT sing N N 123 HIS CB CG sing N N 124 HIS CB HB2 sing N N 125 HIS CB HB3 sing N N 126 HIS CG ND1 sing Y N 127 HIS CG CD2 doub Y N 128 HIS ND1 CE1 doub Y N 129 HIS ND1 HD1 sing N N 130 HIS CD2 NE2 sing Y N 131 HIS CD2 HD2 sing N N 132 HIS CE1 NE2 sing Y N 133 HIS CE1 HE1 sing N N 134 HIS NE2 HE2 sing N N 135 HIS OXT HXT sing N N 136 ILE N CA sing N N 137 ILE N H sing N N 138 ILE N H2 sing N N 139 ILE CA C sing N N 140 ILE CA CB sing N N 141 ILE CA HA sing N N 142 ILE C O doub N N 143 ILE C OXT sing N N 144 ILE CB CG1 sing N N 145 ILE CB CG2 sing N N 146 ILE CB HB sing N N 147 ILE CG1 CD1 sing N N 148 ILE CG1 HG12 sing N N 149 ILE CG1 HG13 sing N N 150 ILE CG2 HG21 sing N N 151 ILE CG2 HG22 sing N N 152 ILE CG2 HG23 sing N N 153 ILE CD1 HD11 sing N N 154 ILE CD1 HD12 sing N N 155 ILE CD1 HD13 sing N N 156 ILE OXT HXT sing N N 157 LEU N CA sing N N 158 LEU N H sing N N 159 LEU N H2 sing N N 160 LEU CA C sing N N 161 LEU CA CB sing N N 162 LEU CA HA sing N N 163 LEU C O doub N N 164 LEU C OXT sing N N 165 LEU CB CG sing N N 166 LEU CB HB2 sing N N 167 LEU CB HB3 sing N N 168 LEU CG CD1 sing N N 169 LEU CG CD2 sing N N 170 LEU CG HG sing N N 171 LEU CD1 HD11 sing N N 172 LEU CD1 HD12 sing N N 173 LEU CD1 HD13 sing N N 174 LEU CD2 HD21 sing N N 175 LEU CD2 HD22 sing N N 176 LEU CD2 HD23 sing N N 177 LEU OXT HXT sing N N 178 LYS N CA sing N N 179 LYS N H sing N N 180 LYS N H2 sing N N 181 LYS CA C sing N N 182 LYS CA CB sing N N 183 LYS CA HA sing N N 184 LYS C O doub N N 185 LYS C OXT sing N N 186 LYS CB CG sing N N 187 LYS CB HB2 sing N N 188 LYS CB HB3 sing N N 189 LYS CG CD sing N N 190 LYS CG HG2 sing N N 191 LYS CG HG3 sing N N 192 LYS CD CE sing N N 193 LYS CD HD2 sing N N 194 LYS CD HD3 sing N N 195 LYS CE NZ sing N N 196 LYS CE HE2 sing N N 197 LYS CE HE3 sing N N 198 LYS NZ HZ1 sing N N 199 LYS NZ HZ2 sing N N 200 LYS NZ HZ3 sing N N 201 LYS OXT HXT sing N N 202 MET N CA sing N N 203 MET N H sing N N 204 MET N H2 sing N N 205 MET CA C sing N N 206 MET CA CB sing N N 207 MET CA HA sing N N 208 MET C O doub N N 209 MET C OXT sing N N 210 MET CB CG sing N N 211 MET CB HB2 sing N N 212 MET CB HB3 sing N N 213 MET CG SD sing N N 214 MET CG HG2 sing N N 215 MET CG HG3 sing N N 216 MET SD CE sing N N 217 MET CE HE1 sing N N 218 MET CE HE2 sing N N 219 MET CE HE3 sing N N 220 MET OXT HXT sing N N 221 PHE N CA sing N N 222 PHE N H sing N N 223 PHE N H2 sing N N 224 PHE CA C sing N N 225 PHE CA CB sing N N 226 PHE CA HA sing N N 227 PHE C O doub N N 228 PHE C OXT sing N N 229 PHE CB CG sing N N 230 PHE CB HB2 sing N N 231 PHE CB HB3 sing N N 232 PHE CG CD1 doub Y N 233 PHE CG CD2 sing Y N 234 PHE CD1 CE1 sing Y N 235 PHE CD1 HD1 sing N N 236 PHE CD2 CE2 doub Y N 237 PHE CD2 HD2 sing N N 238 PHE CE1 CZ doub Y N 239 PHE CE1 HE1 sing N N 240 PHE CE2 CZ sing Y N 241 PHE CE2 HE2 sing N N 242 PHE CZ HZ sing N N 243 PHE OXT HXT sing N N 244 PRO N CA sing N N 245 PRO N CD sing N N 246 PRO N H sing N N 247 PRO CA C sing N N 248 PRO CA CB sing N N 249 PRO CA HA sing N N 250 PRO C O doub N N 251 PRO C OXT sing N N 252 PRO CB CG sing N N 253 PRO CB HB2 sing N N 254 PRO CB HB3 sing N N 255 PRO CG CD sing N N 256 PRO CG HG2 sing N N 257 PRO CG HG3 sing N N 258 PRO CD HD2 sing N N 259 PRO CD HD3 sing N N 260 PRO OXT HXT sing N N 261 SER N CA sing N N 262 SER N H sing N N 263 SER N H2 sing N N 264 SER CA C sing N N 265 SER CA CB sing N N 266 SER CA HA sing N N 267 SER C O doub N N 268 SER C OXT sing N N 269 SER CB OG sing N N 270 SER CB HB2 sing N N 271 SER CB HB3 sing N N 272 SER OG HG sing N N 273 SER OXT HXT sing N N 274 THR N CA sing N N 275 THR N H sing N N 276 THR N H2 sing N N 277 THR CA C sing N N 278 THR CA CB sing N N 279 THR CA HA sing N N 280 THR C O doub N N 281 THR C OXT sing N N 282 THR CB OG1 sing N N 283 THR CB CG2 sing N N 284 THR CB HB sing N N 285 THR OG1 HG1 sing N N 286 THR CG2 HG21 sing N N 287 THR CG2 HG22 sing N N 288 THR CG2 HG23 sing N N 289 THR OXT HXT sing N N 290 TRP N CA sing N N 291 TRP N H sing N N 292 TRP N H2 sing N N 293 TRP CA C sing N N 294 TRP CA CB sing N N 295 TRP CA HA sing N N 296 TRP C O doub N N 297 TRP C OXT sing N N 298 TRP CB CG sing N N 299 TRP CB HB2 sing N N 300 TRP CB HB3 sing N N 301 TRP CG CD1 doub Y N 302 TRP CG CD2 sing Y N 303 TRP CD1 NE1 sing Y N 304 TRP CD1 HD1 sing N N 305 TRP CD2 CE2 doub Y N 306 TRP CD2 CE3 sing Y N 307 TRP NE1 CE2 sing Y N 308 TRP NE1 HE1 sing N N 309 TRP CE2 CZ2 sing Y N 310 TRP CE3 CZ3 doub Y N 311 TRP CE3 HE3 sing N N 312 TRP CZ2 CH2 doub Y N 313 TRP CZ2 HZ2 sing N N 314 TRP CZ3 CH2 sing Y N 315 TRP CZ3 HZ3 sing N N 316 TRP CH2 HH2 sing N N 317 TRP OXT HXT sing N N 318 TYR N CA sing N N 319 TYR N H sing N N 320 TYR N H2 sing N N 321 TYR CA C sing N N 322 TYR CA CB sing N N 323 TYR CA HA sing N N 324 TYR C O doub N N 325 TYR C OXT sing N N 326 TYR CB CG sing N N 327 TYR CB HB2 sing N N 328 TYR CB HB3 sing N N 329 TYR CG CD1 doub Y N 330 TYR CG CD2 sing Y N 331 TYR CD1 CE1 sing Y N 332 TYR CD1 HD1 sing N N 333 TYR CD2 CE2 doub Y N 334 TYR CD2 HD2 sing N N 335 TYR CE1 CZ doub Y N 336 TYR CE1 HE1 sing N N 337 TYR CE2 CZ sing Y N 338 TYR CE2 HE2 sing N N 339 TYR CZ OH sing N N 340 TYR OH HH sing N N 341 TYR OXT HXT sing N N 342 VAL N CA sing N N 343 VAL N H sing N N 344 VAL N H2 sing N N 345 VAL CA C sing N N 346 VAL CA CB sing N N 347 VAL CA HA sing N N 348 VAL C O doub N N 349 VAL C OXT sing N N 350 VAL CB CG1 sing N N 351 VAL CB CG2 sing N N 352 VAL CB HB sing N N 353 VAL CG1 HG11 sing N N 354 VAL CG1 HG12 sing N N 355 VAL CG1 HG13 sing N N 356 VAL CG2 HG21 sing N N 357 VAL CG2 HG22 sing N N 358 VAL CG2 HG23 sing N N 359 VAL OXT HXT sing N N 360 # _em_admin.current_status REL _em_admin.deposition_date 2023-10-12 _em_admin.deposition_site PDBJ _em_admin.entry_id 8WQP _em_admin.last_update 2024-10-09 _em_admin.map_release_date 2024-10-09 _em_admin.title 'Cryo-EM structure of T. pseudonana PyShell helical tube' # loop_ _em_buffer_component.buffer_id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.id _em_buffer_component.name 1 0.3 M NaCl 1 'sodium chloride' 1 50 mM Tris-HCl 2 'Tris Hydrochloride Acid' 1 1 mM EDTA 3 'ethylenediaminetetraacetic acid' 1 1 mM DTT 4 dithiothreitol # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units ? _em_entity_assembly_molwt.value ? # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 35128 _em_entity_assembly_naturalsource.organism 'Thalassiosira pseudonana' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 469008 _em_entity_assembly_recombinant.organism 'Escherichia coli BL21(DE3)' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.details ? _em_helical_entity.axial_symmetry C1 _em_helical_entity.angular_rotation_per_subunit -56.07 _em_helical_entity.axial_rise_per_subunit 3.59 # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time 2.631 _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 50 _em_image_recording.details 'Images were collected in movie-mode at 52 frames per second' _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images 5951 # _em_imaging_optics.chr_aberration_corrector ? _em_imaging_optics.energyfilter_lower ? _em_imaging_optics.energyfilter_slit_width 20 _em_imaging_optics.energyfilter_name 'GIF Bioquantum' _em_imaging_optics.energyfilter_upper ? _em_imaging_optics.id 1 _em_imaging_optics.imaging_id 1 _em_imaging_optics.phase_plate ? _em_imaging_optics.sph_aberration_corrector 'Microscope was modified with a Cs corrector' _em_imaging_optics.details ? # _em_particle_selection.details ? _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.method ? _em_particle_selection.num_particles_selected 5951 _em_particle_selection.reference_model ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? RELION 3.1 'IMAGE ACQUISITION' ? 2 ? ? 1 SerialEM ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? Gctf ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? 1 ? Coot ? 'MODEL FITTING' ? 8 ? 1 ? 'UCSF Chimera' ? OTHER ? 9 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? cryoSPARC 4.0.2 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? RELION 4.0 CLASSIFICATION ? 12 1 ? ? RELION 4.0 RECONSTRUCTION ? 13 1 ? ? RELION 4.0 'MODEL REFINEMENT' ? 14 ? 1 ? PHENIX ? # _em_specimen.concentration 2.0 _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Japan Society for the Promotion of Science (JSPS)' Japan 23H04958 1 'Japan Society for the Promotion of Science (JSPS)' Japan 19H01153 2 'Japan Science and Technology' Japan JPMJCR20E1 3 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.type 'in silico model' _pdbx_initial_refinement_model.source_name AlphaFold _pdbx_initial_refinement_model.accession_code ? # _atom_sites.entry_id 8WQP _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O S # loop_