HEADER IMMUNE SYSTEM 12-OCT-23 8WQT
TITLE CRYO-EM STRUCTURE OF MOUSE TLR4/MD-2/DLAM1 COMPLEX
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: LYMPHOCYTE ANTIGEN 96;
COMPND 3 CHAIN: C, D;
COMPND 4 ENGINEERED: YES;
COMPND 5 MOL_ID: 2;
COMPND 6 MOLECULE: TOLL-LIKE RECEPTOR 4;
COMPND 7 CHAIN: A, B;
COMPND 8 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS;
SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE;
SOURCE 4 ORGANISM_TAXID: 10090;
SOURCE 5 GENE: LY96;
SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111;
SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HIGH FIVE;
SOURCE 9 MOL_ID: 2;
SOURCE 10 ORGANISM_SCIENTIFIC: MUS MUSCULUS;
SOURCE 11 ORGANISM_COMMON: HOUSE MOUSE;
SOURCE 12 ORGANISM_TAXID: 10090;
SOURCE 13 GENE: TLR4;
SOURCE 14 EXPRESSION_SYSTEM: TRICHOPLUSIA NI;
SOURCE 15 EXPRESSION_SYSTEM_TAXID: 7111;
SOURCE 16 EXPRESSION_SYSTEM_CELL_LINE: HIGH FIVE
KEYWDS INNATE IMMUNE SYSTEM, TOLL-LIKE RECEPTORS, TLR4 AGONIST, VACCINE
KEYWDS 2 ADJUVANTS, DISACCHARIDE-BASED LIPID A MIMETICS, IMMUNE SYSTEM
EXPDTA ELECTRON MICROSCOPY
AUTHOR Y.FU,H.KIM,A.ZAMYATINA,H.M.KIM
REVDAT 3 12-FEB-25 8WQT 1 COMPND AUTHOR REMARK DBREF
REVDAT 3 2 1 SEQRES HELIX SHEET SSBOND
REVDAT 3 3 1 LINK ATOM
REVDAT 2 13-NOV-24 8WQT 1 REMARK
REVDAT 1 16-OCT-24 8WQT 0
JRNL AUTH Y.FU
JRNL TITL STRUCTURAL INSIGHT ON TAILORED MODULATION OF TLR4-MEDIATED
JRNL TITL 2 PRO-INFLAMMATORY RESPONSE BY DISACCHARIDE LIPID A MIMETICS
JRNL REF TO BE PUBLISHED
JRNL REFN
REMARK 2
REMARK 2 RESOLUTION. 2.60 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 SOFTWARE PACKAGES : PHENIX
REMARK 3 RECONSTRUCTION SCHEMA : NULL
REMARK 3
REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT
REMARK 3 PDB ENTRY : 3VQ2
REMARK 3 REFINEMENT SPACE : REAL
REMARK 3 REFINEMENT PROTOCOL : NULL
REMARK 3 REFINEMENT TARGET : NULL
REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL
REMARK 3
REMARK 3 FITTING PROCEDURE : NULL
REMARK 3
REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS
REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL
REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL
REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.600
REMARK 3 NUMBER OF PARTICLES : 546528
REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE
REMARK 3 CORRECTION
REMARK 3
REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL
REMARK 3
REMARK 3 OTHER DETAILS: NULL
REMARK 4
REMARK 4 8WQT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-OCT-23.
REMARK 100 THE DEPOSITION ID IS D_1300041655.
REMARK 245
REMARK 245 EXPERIMENTAL DETAILS
REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE
REMARK 245 SPECIMEN TYPE : NULL
REMARK 245
REMARK 245 ELECTRON MICROSCOPE SAMPLE
REMARK 245 SAMPLE TYPE : PARTICLE
REMARK 245 PARTICLE TYPE : POINT
REMARK 245 NAME OF SAMPLE : MOUSE TLR4/MD2/DLAM1 COMPLEX
REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL
REMARK 245 SAMPLE SUPPORT DETAILS : 10MA
REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL
REMARK 245 SAMPLE BUFFER : NULL
REMARK 245 PH : 8.00
REMARK 245 SAMPLE DETAILS : NULL
REMARK 245
REMARK 245 DATA ACQUISITION
REMARK 245 DATE OF EXPERIMENT : NULL
REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 11714
REMARK 245 TEMPERATURE (KELVIN) : NULL
REMARK 245 MICROSCOPE MODEL : TFS KRIOS
REMARK 245 DETECTOR TYPE : GATAN K3 BIOQUANTUM (6K X
REMARK 245 4K)
REMARK 245 MINIMUM DEFOCUS (NM) : 700.00
REMARK 245 MAXIMUM DEFOCUS (NM) : 1900.00
REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL
REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL
REMARK 245 NOMINAL CS : 2.70
REMARK 245 IMAGING MODE : BRIGHT FIELD
REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 6620.00
REMARK 245 ILLUMINATION MODE : FLOOD BEAM
REMARK 245 NOMINAL MAGNIFICATION : 105000
REMARK 245 CALIBRATED MAGNIFICATION : 58963
REMARK 245 SOURCE : FIELD EMISSION GUN
REMARK 245 ACCELERATION VOLTAGE (KV) : 300
REMARK 245 IMAGING DETAILS : NULL
REMARK 247
REMARK 247 ELECTRON MICROSCOPY
REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON
REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE
REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES
REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION
REMARK 247 OF THE STRUCTURE FACTORS.
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, A, B, F, G, H, I, J, E
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLU C 19
REMARK 465 LYS C 20
REMARK 465 ARG C 157
REMARK 465 ASP C 158
REMARK 465 VAL C 159
REMARK 465 ASN C 160
REMARK 465 GLU D 19
REMARK 465 LYS D 20
REMARK 465 ARG D 157
REMARK 465 ASP D 158
REMARK 465 VAL D 159
REMARK 465 ASN D 160
REMARK 465 ASN A 621
REMARK 465 ASN A 622
REMARK 465 SER A 623
REMARK 465 THR A 624
REMARK 465 CYS A 625
REMARK 465 TYR A 626
REMARK 465 MET A 627
REMARK 465 TYR A 628
REMARK 465 LYS A 629
REMARK 465 ASN B 621
REMARK 465 ASN B 622
REMARK 465 SER B 623
REMARK 465 THR B 624
REMARK 465 CYS B 625
REMARK 465 TYR B 626
REMARK 465 MET B 627
REMARK 465 TYR B 628
REMARK 465 LYS B 629
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ARG C 68 30.98 -90.74
REMARK 500 LEU C 71 6.13 59.93
REMARK 500 ARG D 68 30.95 -90.68
REMARK 500 LEU D 71 6.14 59.88
REMARK 500 PRO A 27 5.13 -69.31
REMARK 500 ASN A 34 -4.85 76.50
REMARK 500 ASP A 41 61.07 62.22
REMARK 500 PRO A 64 47.38 -77.98
REMARK 500 SER A 77 46.24 -82.73
REMARK 500 ARG A 86 -12.55 68.70
REMARK 500 TRP A 97 53.20 -92.91
REMARK 500 SER A 126 19.92 -140.85
REMARK 500 LEU A 194 15.33 58.67
REMARK 500 GLN A 223 116.06 -162.13
REMARK 500 LYS A 301 56.40 -96.39
REMARK 500 GLN A 342 144.82 -171.02
REMARK 500 ASP A 347 23.95 -140.72
REMARK 500 ARG A 380 8.33 58.21
REMARK 500 CYS A 389 54.65 38.80
REMARK 500 SER A 413 17.72 -141.22
REMARK 500 ASN A 415 31.47 -97.98
REMARK 500 HIS A 424 111.63 -160.10
REMARK 500 HIS A 429 26.27 -144.02
REMARK 500 TYR A 454 12.14 58.42
REMARK 500 PHE A 465 32.54 -97.54
REMARK 500 LYS A 503 -5.82 65.82
REMARK 500 GLN A 505 34.82 -90.83
REMARK 500 HIS A 527 17.37 56.92
REMARK 500 TYR A 538 -0.08 63.81
REMARK 500 LYS A 566 50.53 -90.24
REMARK 500 SER A 567 -11.12 -140.98
REMARK 500 ILE A 581 56.75 -95.52
REMARK 500 CYS A 582 17.42 55.74
REMARK 500 HIS A 584 68.33 60.29
REMARK 500 GLN A 603 58.38 -93.55
REMARK 500 THR A 614 -35.74 -141.38
REMARK 500 PRO B 27 5.16 -69.33
REMARK 500 ASN B 34 -4.86 76.51
REMARK 500 ASP B 41 61.06 62.18
REMARK 500 PRO B 64 47.45 -78.03
REMARK 500 SER B 77 46.21 -82.74
REMARK 500 ARG B 86 -12.54 68.68
REMARK 500 TRP B 97 53.17 -92.87
REMARK 500 SER B 126 19.94 -140.84
REMARK 500 LEU B 194 15.37 58.64
REMARK 500 GLN B 223 116.06 -162.16
REMARK 500 LYS B 301 56.40 -96.38
REMARK 500 GLN B 342 144.84 -170.99
REMARK 500 ASP B 347 23.92 -140.69
REMARK 500 ARG B 380 8.33 58.22
REMARK 500
REMARK 500 THIS ENTRY HAS 68 RAMACHANDRAN OUTLIERS.
REMARK 500
REMARK 500 REMARK: NULL
REMARK 610
REMARK 610 MISSING HETEROATOM
REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 610 I=INSERTION CODE):
REMARK 610 M RES C SSEQI
REMARK 610 NAG F 1
REMARK 610 NAG G 1
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: EMD-37753 RELATED DB: EMDB
REMARK 900 CRYO-EM STRUCTURE OF MOUSE TLR4/MD-2/DLAM1 COMPLEX
REMARK 900 RELATED ID: 8WSA RELATED DB: PDB
REMARK 900 MTLR4/MD-2/DLAM5
REMARK 900 RELATED ID: 8WRY RELATED DB: PDB
REMARK 900 MTLR4/MD-2/DLAM3
REMARK 900 RELATED ID: 8WO1 RELATED DB: PDB
REMARK 900 HTLR4/MD-2/DLAM5
REMARK 900 RELATED ID: 8WTA RELATED DB: PDB
REMARK 900 HTLR4/MD-2/DLAM3
REMARK 900 RELATED ID: 9J03 RELATED DB: PDB
REMARK 900 HTLR4/MD-2/DLAM1
DBREF 8WQT C 19 160 UNP Q9JHF9 LY96_MOUSE 19 160
DBREF 8WQT D 19 160 UNP Q9JHF9 LY96_MOUSE 19 160
DBREF 8WQT A 26 629 UNP Q9QUK6 TLR4_MOUSE 26 629
DBREF 8WQT B 26 629 UNP Q9QUK6 TLR4_MOUSE 26 629
SEQRES 1 C 142 GLU LYS GLN GLN TRP PHE CYS ASN SER SER ASP ALA ILE
SEQRES 2 C 142 ILE SER TYR SER TYR CYS ASP HIS LEU LYS PHE PRO ILE
SEQRES 3 C 142 SER ILE SER SER GLU PRO CYS ILE ARG LEU ARG GLY THR
SEQRES 4 C 142 ASN GLY PHE VAL HIS VAL GLU PHE ILE PRO ARG GLY ASN
SEQRES 5 C 142 LEU LYS TYR LEU TYR PHE ASN LEU PHE ILE SER VAL ASN
SEQRES 6 C 142 SER ILE GLU LEU PRO LYS ARG LYS GLU VAL LEU CYS HIS
SEQRES 7 C 142 GLY HIS ASP ASP ASP TYR SER PHE CYS ARG ALA LEU LYS
SEQRES 8 C 142 GLY GLU THR VAL ASN THR SER ILE PRO PHE SER PHE GLU
SEQRES 9 C 142 GLY ILE LEU PHE PRO LYS GLY HIS TYR ARG CYS VAL ALA
SEQRES 10 C 142 GLU ALA ILE ALA GLY ASP THR GLU GLU LYS LEU PHE CYS
SEQRES 11 C 142 LEU ASN PHE THR ILE ILE HIS ARG ARG ASP VAL ASN
SEQRES 1 D 142 GLU LYS GLN GLN TRP PHE CYS ASN SER SER ASP ALA ILE
SEQRES 2 D 142 ILE SER TYR SER TYR CYS ASP HIS LEU LYS PHE PRO ILE
SEQRES 3 D 142 SER ILE SER SER GLU PRO CYS ILE ARG LEU ARG GLY THR
SEQRES 4 D 142 ASN GLY PHE VAL HIS VAL GLU PHE ILE PRO ARG GLY ASN
SEQRES 5 D 142 LEU LYS TYR LEU TYR PHE ASN LEU PHE ILE SER VAL ASN
SEQRES 6 D 142 SER ILE GLU LEU PRO LYS ARG LYS GLU VAL LEU CYS HIS
SEQRES 7 D 142 GLY HIS ASP ASP ASP TYR SER PHE CYS ARG ALA LEU LYS
SEQRES 8 D 142 GLY GLU THR VAL ASN THR SER ILE PRO PHE SER PHE GLU
SEQRES 9 D 142 GLY ILE LEU PHE PRO LYS GLY HIS TYR ARG CYS VAL ALA
SEQRES 10 D 142 GLU ALA ILE ALA GLY ASP THR GLU GLU LYS LEU PHE CYS
SEQRES 11 D 142 LEU ASN PHE THR ILE ILE HIS ARG ARG ASP VAL ASN
SEQRES 1 A 604 ASN PRO CYS ILE GLU VAL VAL PRO ASN ILE THR TYR GLN
SEQRES 2 A 604 CYS MET ASP GLN LYS LEU SER LYS VAL PRO ASP ASP ILE
SEQRES 3 A 604 PRO SER SER THR LYS ASN ILE ASP LEU SER PHE ASN PRO
SEQRES 4 A 604 LEU LYS ILE LEU LYS SER TYR SER PHE SER ASN PHE SER
SEQRES 5 A 604 GLU LEU GLN TRP LEU ASP LEU SER ARG CYS GLU ILE GLU
SEQRES 6 A 604 THR ILE GLU ASP LYS ALA TRP HIS GLY LEU HIS HIS LEU
SEQRES 7 A 604 SER ASN LEU ILE LEU THR GLY ASN PRO ILE GLN SER PHE
SEQRES 8 A 604 SER PRO GLY SER PHE SER GLY LEU THR SER LEU GLU ASN
SEQRES 9 A 604 LEU VAL ALA VAL GLU THR LYS LEU ALA SER LEU GLU SER
SEQRES 10 A 604 PHE PRO ILE GLY GLN LEU ILE THR LEU LYS LYS LEU ASN
SEQRES 11 A 604 VAL ALA HIS ASN PHE ILE HIS SER CYS LYS LEU PRO ALA
SEQRES 12 A 604 TYR PHE SER ASN LEU THR ASN LEU VAL HIS VAL ASP LEU
SEQRES 13 A 604 SER TYR ASN TYR ILE GLN THR ILE THR VAL ASN ASP LEU
SEQRES 14 A 604 GLN PHE LEU ARG GLU ASN PRO GLN VAL ASN LEU SER LEU
SEQRES 15 A 604 ASP MET SER LEU ASN PRO ILE ASP PHE ILE GLN ASP GLN
SEQRES 16 A 604 ALA PHE GLN GLY ILE LYS LEU HIS GLU LEU THR LEU ARG
SEQRES 17 A 604 GLY ASN PHE ASN SER SER ASN ILE MET LYS THR CYS LEU
SEQRES 18 A 604 GLN ASN LEU ALA GLY LEU HIS VAL HIS ARG LEU ILE LEU
SEQRES 19 A 604 GLY GLU PHE LYS ASP GLU ARG ASN LEU GLU ILE PHE GLU
SEQRES 20 A 604 PRO SER ILE MET GLU GLY LEU CYS ASP VAL THR ILE ASP
SEQRES 21 A 604 GLU PHE ARG LEU THR TYR THR ASN ASP PHE SER ASP ASP
SEQRES 22 A 604 ILE VAL LYS PHE HIS CYS LEU ALA ASN VAL SER ALA MET
SEQRES 23 A 604 SER LEU ALA GLY VAL SER ILE LYS TYR LEU GLU ASP VAL
SEQRES 24 A 604 PRO LYS HIS PHE LYS TRP GLN SER LEU SER ILE ILE ARG
SEQRES 25 A 604 CYS GLN LEU LYS GLN PHE PRO THR LEU ASP LEU PRO PHE
SEQRES 26 A 604 LEU LYS SER LEU THR LEU THR MET ASN LYS GLY SER ILE
SEQRES 27 A 604 SER PHE LYS LYS VAL ALA LEU PRO SER LEU SER TYR LEU
SEQRES 28 A 604 ASP LEU SER ARG ASN ALA LEU SER PHE SER GLY CYS CYS
SEQRES 29 A 604 SER TYR SER ASP LEU GLY THR ASN SER LEU ARG HIS LEU
SEQRES 30 A 604 ASP LEU SER PHE ASN GLY ALA ILE ILE MET SER ALA ASN
SEQRES 31 A 604 PHE MET GLY LEU GLU GLU LEU GLN HIS LEU ASP PHE GLN
SEQRES 32 A 604 HIS SER THR LEU LYS ARG VAL THR GLU PHE SER ALA PHE
SEQRES 33 A 604 LEU SER LEU GLU LYS LEU LEU TYR LEU ASP ILE SER TYR
SEQRES 34 A 604 THR ASN THR LYS ILE ASP PHE ASP GLY ILE PHE LEU GLY
SEQRES 35 A 604 LEU THR SER LEU ASN THR LEU LYS MET ALA GLY ASN SER
SEQRES 36 A 604 PHE LYS ASP ASN THR LEU SER ASN VAL PHE ALA ASN THR
SEQRES 37 A 604 THR ASN LEU THR PHE LEU ASP LEU SER LYS CYS GLN LEU
SEQRES 38 A 604 GLU GLN ILE SER TRP GLY VAL PHE ASP THR LEU HIS ARG
SEQRES 39 A 604 LEU GLN LEU LEU ASN MET SER HIS ASN ASN LEU LEU PHE
SEQRES 40 A 604 LEU ASP SER SER HIS TYR ASN GLN LEU TYR SER LEU SER
SEQRES 41 A 604 THR LEU ASP CYS SER PHE ASN ARG ILE GLU THR SER LYS
SEQRES 42 A 604 GLY ILE LEU GLN HIS PHE PRO LYS SER LEU ALA PHE PHE
SEQRES 43 A 604 ASN LEU THR ASN ASN SER VAL ALA CYS ILE CYS GLU HIS
SEQRES 44 A 604 GLN LYS PHE LEU GLN TRP VAL LYS GLU GLN LYS GLN PHE
SEQRES 45 A 604 LEU VAL ASN VAL GLU GLN MET THR CYS ALA THR PRO VAL
SEQRES 46 A 604 GLU MET ASN THR SER LEU VAL LEU ASP PHE ASN ASN SER
SEQRES 47 A 604 THR CYS TYR MET TYR LYS
SEQRES 1 B 604 ASN PRO CYS ILE GLU VAL VAL PRO ASN ILE THR TYR GLN
SEQRES 2 B 604 CYS MET ASP GLN LYS LEU SER LYS VAL PRO ASP ASP ILE
SEQRES 3 B 604 PRO SER SER THR LYS ASN ILE ASP LEU SER PHE ASN PRO
SEQRES 4 B 604 LEU LYS ILE LEU LYS SER TYR SER PHE SER ASN PHE SER
SEQRES 5 B 604 GLU LEU GLN TRP LEU ASP LEU SER ARG CYS GLU ILE GLU
SEQRES 6 B 604 THR ILE GLU ASP LYS ALA TRP HIS GLY LEU HIS HIS LEU
SEQRES 7 B 604 SER ASN LEU ILE LEU THR GLY ASN PRO ILE GLN SER PHE
SEQRES 8 B 604 SER PRO GLY SER PHE SER GLY LEU THR SER LEU GLU ASN
SEQRES 9 B 604 LEU VAL ALA VAL GLU THR LYS LEU ALA SER LEU GLU SER
SEQRES 10 B 604 PHE PRO ILE GLY GLN LEU ILE THR LEU LYS LYS LEU ASN
SEQRES 11 B 604 VAL ALA HIS ASN PHE ILE HIS SER CYS LYS LEU PRO ALA
SEQRES 12 B 604 TYR PHE SER ASN LEU THR ASN LEU VAL HIS VAL ASP LEU
SEQRES 13 B 604 SER TYR ASN TYR ILE GLN THR ILE THR VAL ASN ASP LEU
SEQRES 14 B 604 GLN PHE LEU ARG GLU ASN PRO GLN VAL ASN LEU SER LEU
SEQRES 15 B 604 ASP MET SER LEU ASN PRO ILE ASP PHE ILE GLN ASP GLN
SEQRES 16 B 604 ALA PHE GLN GLY ILE LYS LEU HIS GLU LEU THR LEU ARG
SEQRES 17 B 604 GLY ASN PHE ASN SER SER ASN ILE MET LYS THR CYS LEU
SEQRES 18 B 604 GLN ASN LEU ALA GLY LEU HIS VAL HIS ARG LEU ILE LEU
SEQRES 19 B 604 GLY GLU PHE LYS ASP GLU ARG ASN LEU GLU ILE PHE GLU
SEQRES 20 B 604 PRO SER ILE MET GLU GLY LEU CYS ASP VAL THR ILE ASP
SEQRES 21 B 604 GLU PHE ARG LEU THR TYR THR ASN ASP PHE SER ASP ASP
SEQRES 22 B 604 ILE VAL LYS PHE HIS CYS LEU ALA ASN VAL SER ALA MET
SEQRES 23 B 604 SER LEU ALA GLY VAL SER ILE LYS TYR LEU GLU ASP VAL
SEQRES 24 B 604 PRO LYS HIS PHE LYS TRP GLN SER LEU SER ILE ILE ARG
SEQRES 25 B 604 CYS GLN LEU LYS GLN PHE PRO THR LEU ASP LEU PRO PHE
SEQRES 26 B 604 LEU LYS SER LEU THR LEU THR MET ASN LYS GLY SER ILE
SEQRES 27 B 604 SER PHE LYS LYS VAL ALA LEU PRO SER LEU SER TYR LEU
SEQRES 28 B 604 ASP LEU SER ARG ASN ALA LEU SER PHE SER GLY CYS CYS
SEQRES 29 B 604 SER TYR SER ASP LEU GLY THR ASN SER LEU ARG HIS LEU
SEQRES 30 B 604 ASP LEU SER PHE ASN GLY ALA ILE ILE MET SER ALA ASN
SEQRES 31 B 604 PHE MET GLY LEU GLU GLU LEU GLN HIS LEU ASP PHE GLN
SEQRES 32 B 604 HIS SER THR LEU LYS ARG VAL THR GLU PHE SER ALA PHE
SEQRES 33 B 604 LEU SER LEU GLU LYS LEU LEU TYR LEU ASP ILE SER TYR
SEQRES 34 B 604 THR ASN THR LYS ILE ASP PHE ASP GLY ILE PHE LEU GLY
SEQRES 35 B 604 LEU THR SER LEU ASN THR LEU LYS MET ALA GLY ASN SER
SEQRES 36 B 604 PHE LYS ASP ASN THR LEU SER ASN VAL PHE ALA ASN THR
SEQRES 37 B 604 THR ASN LEU THR PHE LEU ASP LEU SER LYS CYS GLN LEU
SEQRES 38 B 604 GLU GLN ILE SER TRP GLY VAL PHE ASP THR LEU HIS ARG
SEQRES 39 B 604 LEU GLN LEU LEU ASN MET SER HIS ASN ASN LEU LEU PHE
SEQRES 40 B 604 LEU ASP SER SER HIS TYR ASN GLN LEU TYR SER LEU SER
SEQRES 41 B 604 THR LEU ASP CYS SER PHE ASN ARG ILE GLU THR SER LYS
SEQRES 42 B 604 GLY ILE LEU GLN HIS PHE PRO LYS SER LEU ALA PHE PHE
SEQRES 43 B 604 ASN LEU THR ASN ASN SER VAL ALA CYS ILE CYS GLU HIS
SEQRES 44 B 604 GLN LYS PHE LEU GLN TRP VAL LYS GLU GLN LYS GLN PHE
SEQRES 45 B 604 LEU VAL ASN VAL GLU GLN MET THR CYS ALA THR PRO VAL
SEQRES 46 B 604 GLU MET ASN THR SER LEU VAL LEU ASP PHE ASN ASN SER
SEQRES 47 B 604 THR CYS TYR MET TYR LYS
HET NAG F 1 14
HET NAG F 2 14
HET NAG G 1 14
HET NAG G 2 14
HET NAG H 1 14
HET NAG H 2 14
HET NAG I 1 14
HET NAG I 2 14
HET NAG J 1 14
HET NAG J 2 14
HET NAG E 1 14
HET NAG E 2 14
HET 2IL C 201 29
HET 2IL C 202 29
HET NAG C 203 14
HET NAG C 204 14
HET 2IL D 201 29
HET 2IL D 202 29
HET NAG D 203 14
HET NAG D 204 14
HET GP4 A 701 14
HET 0IL A 702 32
HET X6Z A 703 17
HET NAG A 704 14
HET NAG A 705 14
HET NAG A 706 14
HET NAG A 707 14
HET NAG A 708 14
HET NAG A 709 14
HET X6Z B 701 17
HET GP4 B 702 14
HET 0IL B 703 32
HET NAG B 704 14
HET NAG B 705 14
HET NAG B 706 14
HET NAG B 707 14
HET NAG B 708 14
HET NAG B 709 14
HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE
HETNAM 2IL (3R)-3-(DODECANOYLOXY)TETRADECANOIC ACID
HETNAM GP4 2-AMINO-2-DEOXY-4-O-PHOSPHONO-ALPHA-D-GLUCOPYRANOSE
HETNAM 0IL (3R)-3-(TETRADECANOYLOXY)TETRADECANOIC ACID
HETNAM X6Z [(2~{R},3~{S},4~{S},5~{S})-5-METHOXY-3,4,6-
HETNAM 2 X6Z TRIS(OXIDANYL)OXAN-2-YL]METHYL DIHYDROGEN PHOSPHATE
HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA-
HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO-
HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE
HETSYN GP4 GLUCOSAMINE 4-PHOSPHATE; N-ACETYL-4-O-PHOSPHONO-ALPHA-
HETSYN 2 GP4 D-GLUCOSAMINE; 2-AMINO-2-DEOXY-4-O-PHOSPHONO-ALPHA-D-
HETSYN 3 GP4 GLUCOSE; 2-AMINO-2-DEOXY-4-O-PHOSPHONO-D-GLUCOSE; 2-
HETSYN 4 GP4 AMINO-2-DEOXY-4-O-PHOSPHONO-GLUCOSE
FORMUL 5 NAG 28(C8 H15 N O6)
FORMUL 11 2IL 4(C26 H50 O4)
FORMUL 19 GP4 2(C6 H14 N O8 P)
FORMUL 20 0IL 2(C28 H54 O4)
FORMUL 21 X6Z 2(C7 H15 O9 P)
HELIX 1 AA1 TYR C 102 ALA C 107 5 6
HELIX 2 AA2 TYR D 102 ALA D 107 5 6
HELIX 3 AA3 PRO A 167 ASN A 172 5 6
HELIX 4 AA4 LEU A 194 ASN A 200 1 7
HELIX 5 AA5 SER A 238 ASN A 248 1 11
HELIX 6 AA6 GLY A 278 VAL A 282 5 5
HELIX 7 AA7 PHE A 481 ASP A 483 5 3
HELIX 8 AA8 HIS A 584 GLN A 594 1 11
HELIX 9 AA9 ASN A 600 MET A 604 5 5
HELIX 10 AB1 PRO B 167 ASN B 172 5 6
HELIX 11 AB2 LEU B 194 ASN B 200 1 7
HELIX 12 AB3 SER B 238 ASN B 248 1 11
HELIX 13 AB4 GLY B 278 VAL B 282 5 5
HELIX 14 AB5 PHE B 481 ASP B 483 5 3
HELIX 15 AB6 HIS B 584 GLN B 594 1 11
HELIX 16 AB7 ASN B 600 MET B 604 5 5
SHEET 1 AA1 6 TRP C 23 ASN C 26 0
SHEET 2 AA1 6 ALA C 30 TYR C 36 -1 O TYR C 34 N TRP C 23
SHEET 3 AA1 6 LYS C 145 HIS C 155 -1 O ASN C 150 N SER C 35
SHEET 4 AA1 6 GLY C 129 ALA C 139 -1 N CYS C 133 O PHE C 151
SHEET 5 AA1 6 LEU C 74 VAL C 82 -1 N TYR C 75 O ILE C 138
SHEET 6 AA1 6 ILE C 85 VAL C 93 -1 O ARG C 90 N LEU C 78
SHEET 1 AA2 3 ILE C 44 GLU C 49 0
SHEET 2 AA2 3 THR C 57 PHE C 65 -1 O PHE C 60 N GLU C 49
SHEET 3 AA2 3 VAL C 113 PHE C 121 -1 O VAL C 113 N PHE C 65
SHEET 1 AA3 6 TRP D 23 ASN D 26 0
SHEET 2 AA3 6 ALA D 30 TYR D 36 -1 O TYR D 34 N TRP D 23
SHEET 3 AA3 6 LYS D 145 HIS D 155 -1 O ASN D 150 N SER D 35
SHEET 4 AA3 6 GLY D 129 ALA D 139 -1 N CYS D 133 O PHE D 151
SHEET 5 AA3 6 LEU D 74 VAL D 82 -1 N TYR D 75 O ILE D 138
SHEET 6 AA3 6 ILE D 85 VAL D 93 -1 O ARG D 90 N LEU D 78
SHEET 1 AA4 3 ILE D 44 GLU D 49 0
SHEET 2 AA4 3 THR D 57 PHE D 65 -1 O PHE D 60 N GLU D 49
SHEET 3 AA4 3 VAL D 113 PHE D 121 -1 O VAL D 113 N PHE D 65
SHEET 1 AA5 2 TYR A 37 GLN A 38 0
SHEET 2 AA5 2 ILE A 58 ASP A 59 1 O ASP A 59 N TYR A 37
SHEET 1 AA6 5 TRP A 81 ASP A 83 0
SHEET 2 AA6 5 ASN A 105 ILE A 107 1 O ASN A 105 N LEU A 82
SHEET 3 AA6 5 ASN A 129 VAL A 131 1 O ASN A 129 N LEU A 106
SHEET 4 AA6 5 LYS A 153 ASN A 155 1 O ASN A 155 N LEU A 130
SHEET 5 AA6 5 HIS A 178 ASP A 180 1 O ASP A 180 N LEU A 154
SHEET 1 AA7 2 THR A 188 ILE A 189 0
SHEET 2 AA7 2 PHE A 216 ILE A 217 1 O PHE A 216 N ILE A 189
SHEET 1 AA8 7 LEU A 207 ASP A 208 0
SHEET 2 AA8 7 LEU A 230 THR A 231 1 O THR A 231 N LEU A 207
SHEET 3 AA8 7 LEU A 257 LEU A 259 1 O ILE A 258 N LEU A 230
SHEET 4 AA8 7 PHE A 287 LEU A 289 1 O ARG A 288 N LEU A 257
SHEET 5 AA8 7 SER A 312 ALA A 314 1 O SER A 312 N LEU A 289
SHEET 6 AA8 7 LEU A 333 ILE A 336 1 O SER A 334 N LEU A 313
SHEET 7 AA8 7 LEU A 354 THR A 357 1 O THR A 355 N ILE A 335
SHEET 1 AA9 2 ALA A 409 ILE A 411 0
SHEET 2 AA9 2 THR A 431 LYS A 433 1 O LYS A 433 N ILE A 410
SHEET 1 AB1 2 THR A 485 LEU A 486 0
SHEET 2 AB1 2 GLN A 508 ILE A 509 1 O GLN A 508 N LEU A 486
SHEET 1 AB2 2 PHE A 498 ASP A 500 0
SHEET 2 AB2 2 LEU A 522 ASN A 524 1 O LEU A 522 N LEU A 499
SHEET 1 AB3 2 TYR B 37 GLN B 38 0
SHEET 2 AB3 2 ILE B 58 ASP B 59 1 O ASP B 59 N TYR B 37
SHEET 1 AB4 5 TRP B 81 ASP B 83 0
SHEET 2 AB4 5 ASN B 105 ILE B 107 1 O ASN B 105 N LEU B 82
SHEET 3 AB4 5 ASN B 129 VAL B 131 1 O ASN B 129 N LEU B 106
SHEET 4 AB4 5 LYS B 153 ASN B 155 1 O ASN B 155 N LEU B 130
SHEET 5 AB4 5 HIS B 178 ASP B 180 1 O ASP B 180 N LEU B 154
SHEET 1 AB5 2 THR B 188 ILE B 189 0
SHEET 2 AB5 2 PHE B 216 ILE B 217 1 O PHE B 216 N ILE B 189
SHEET 1 AB6 7 LEU B 207 ASP B 208 0
SHEET 2 AB6 7 LEU B 230 THR B 231 1 O THR B 231 N LEU B 207
SHEET 3 AB6 7 LEU B 257 LEU B 259 1 O ILE B 258 N LEU B 230
SHEET 4 AB6 7 PHE B 287 LEU B 289 1 O ARG B 288 N LEU B 257
SHEET 5 AB6 7 SER B 312 ALA B 314 1 O SER B 312 N LEU B 289
SHEET 6 AB6 7 LEU B 333 ILE B 336 1 O SER B 334 N LEU B 313
SHEET 7 AB6 7 LEU B 354 THR B 357 1 O THR B 355 N ILE B 335
SHEET 1 AB7 2 ALA B 409 ILE B 411 0
SHEET 2 AB7 2 THR B 431 LYS B 433 1 O LYS B 433 N ILE B 410
SHEET 1 AB8 2 THR B 485 LEU B 486 0
SHEET 2 AB8 2 GLN B 508 ILE B 509 1 O GLN B 508 N LEU B 486
SHEET 1 AB9 2 PHE B 498 ASP B 500 0
SHEET 2 AB9 2 LEU B 522 ASN B 524 1 O LEU B 522 N LEU B 499
SSBOND 1 CYS C 25 CYS C 51 1555 1555 2.03
SSBOND 2 CYS C 37 CYS C 148 1555 1555 2.04
SSBOND 3 CYS C 95 CYS C 105 1555 1555 2.03
SSBOND 4 CYS D 25 CYS D 51 1555 1555 2.03
SSBOND 5 CYS D 37 CYS D 148 1555 1555 2.04
SSBOND 6 CYS D 95 CYS D 105 1555 1555 2.03
SSBOND 7 CYS A 28 CYS A 39 1555 1555 2.04
SSBOND 8 CYS A 280 CYS A 304 1555 1555 2.03
SSBOND 9 CYS A 388 CYS A 389 1555 1555 2.07
SSBOND 10 CYS A 580 CYS A 606 1555 1555 2.03
SSBOND 11 CYS B 28 CYS B 39 1555 1555 2.04
SSBOND 12 CYS B 280 CYS B 304 1555 1555 2.03
SSBOND 13 CYS B 388 CYS B 389 1555 1555 2.07
SSBOND 14 CYS B 580 CYS B 606 1555 1555 2.03
LINK ND2 ASN C 114 C1 NAG C 203 1555 1555 1.44
LINK ND2 ASN C 150 C1 NAG C 204 1555 1555 1.44
LINK C1 2IL C 201 N2 GP4 B 702 1555 1555 1.47
LINK C1 2IL C 202 O4 X6Z A 703 1555 1555 1.37
LINK ND2 ASN D 114 C1 NAG D 203 1555 1555 1.44
LINK ND2 ASN D 150 C1 NAG D 204 1555 1555 1.44
LINK C1 2IL D 201 N2 GP4 A 701 1555 1555 1.47
LINK C1 2IL D 202 O4 X6Z B 701 1555 1555 1.37
LINK ND2 ASN A 34 C1 NAG A 706 1555 1555 1.44
LINK ND2 ASN A 75 C1 NAG A 705 1555 1555 1.44
LINK ND2 ASN A 172 C1 NAG A 704 1555 1555 1.44
LINK ND2 ASN A 204 C1 NAG H 1 1555 1555 1.44
LINK ND2 ASN A 237 C1 NAG A 708 1555 1555 1.44
LINK ND2 ASN A 307 C1 NAG A 709 1555 1555 1.44
LINK ND2 ASN A 492 C1 NAG A 707 1555 1555 1.44
LINK ND2 ASN A 524 C1 NAG I 1 1555 1555 1.47
LINK ND2 ASN A 572 C1 NAG J 1 1555 1555 1.46
LINK C3 GP4 A 701 O3E 0IL A 702 1555 1555 1.42
LINK C1 GP4 A 701 OXT X6Z B 701 1555 1555 1.42
LINK OXT X6Z A 703 C1 GP4 B 702 1555 1555 1.42
LINK ND2 ASN B 34 C1 NAG B 706 1555 1555 1.44
LINK ND2 ASN B 75 C1 NAG B 705 1555 1555 1.44
LINK ND2 ASN B 172 C1 NAG B 704 1555 1555 1.44
LINK ND2 ASN B 204 C1 NAG E 1 1555 1555 1.56
LINK ND2 ASN B 237 C1 NAG B 708 1555 1555 1.44
LINK ND2 ASN B 307 C1 NAG B 709 1555 1555 1.44
LINK ND2 ASN B 492 C1 NAG B 707 1555 1555 1.44
LINK C3 GP4 B 702 O3E 0IL B 703 1555 1555 1.42
LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.46
LINK O4 NAG G 1 C1 NAG G 2 1555 1555 1.44
LINK O4 NAG H 1 C1 NAG H 2 1555 1555 1.46
LINK O4 NAG I 1 C1 NAG I 2 1555 1555 1.46
LINK O4 NAG J 1 C1 NAG J 2 1555 1555 1.44
LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.46
CISPEP 1 GLU C 49 PRO C 50 0 -3.70
CISPEP 2 GLU D 49 PRO D 50 0 -3.72
CISPEP 3 PRO A 609 VAL A 610 0 16.27
CISPEP 4 PRO B 609 VAL B 610 0 16.21
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000