data_8WU5 # _entry.id 8WU5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8WU5 pdb_00008wu5 10.2210/pdb8wu5/pdb WWPDB D_1300041792 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2024-06-05 2 'Structure model' 1 1 2024-06-12 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 2 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.pdbx_database_id_PubMed' 2 2 'Structure model' '_citation.title' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8WU5 _pdbx_database_status.recvd_initial_deposition_date 2023-10-20 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible N # _pdbx_contact_author.id 2 _pdbx_contact_author.email sugiyama.hiroshi.3s@kyoto-u.ac.jp _pdbx_contact_author.name_first Sugiyama _pdbx_contact_author.name_last Hiroshi _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-8923-5946 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Abe, K.' 1 0000-0003-4840-0372 'Takeda, K.' 2 0000-0002-4094-6816 'Sugiyama, H.' 3 0000-0001-8923-5946 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Jacs Au' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2691-3704 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 4 _citation.language ? _citation.page_first 1801 _citation.page_last 1810 _citation.title 'Structural Studies of a Complex of a CAG/CTG Repeat Sequence-Specific Binding Molecule and A-A-Mismatch-Containing DNA.' _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/jacsau.3c00830 _citation.pdbx_database_id_PubMed 38818057 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Abe, K.' 1 ? primary 'Hirose, Y.' 2 ? primary 'Kumagai, T.' 3 ? primary 'Hashiya, K.' 4 ? primary 'Hidaka, K.' 5 ? primary 'Emura, T.' 6 ? primary 'Bando, T.' 7 ? primary 'Takeda, K.' 8 ? primary 'Sugiyama, H.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*GP*CP*(CBR)P*GP*AP*GP*CP*AP*GP*CP*AP*CP*GP*GP*C)-3') ; 4683.884 4 ? ? ? ? 2 non-polymer syn ;(1^2Z,4^2Z,11^2Z,14^2Z,22^2Z,25^2Z,32^2Z,35^2Z,19R,40R)-1^1,4^1,11^1,14^1,22^1,25^1,32^1,35^1-octamethyl-2,5,9,12,15,20,23,26,30,33,36,41-dodecaoxo-1^1H,4^1H,11^1H,14^1H,22^1H,25^1H,32^1H,35^1H-3,6,10,13,16,21,24,27,31,34,37,42-dodecaaza-1(2,4),11,22,32(4,2)-tetraimidazola-4,14,25,35(4,2)-tetrapyrrolacyclodotetracontaphane-19,40-diaminium ; 1323.343 2 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DG)(DC)(CBR)(DG)(DA)(DG)(DC)(DA)(DG)(DC)(DA)(DC)(DG)(DG)(DC)' _entity_poly.pdbx_seq_one_letter_code_can GCCGAGCAGCACGGC _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name ;(1^2Z,4^2Z,11^2Z,14^2Z,22^2Z,25^2Z,32^2Z,35^2Z,19R,40R)-1^1,4^1,11^1,14^1,22^1,25^1,32^1,35^1-octamethyl-2,5,9,12,15,20,23,26,30,33,36,41-dodecaoxo-1^1H,4^1H,11^1H,14^1H,22^1H,25^1H,32^1H,35^1H-3,6,10,13,16,21,24,27,31,34,37,42-dodecaaza-1(2,4),11,22,32(4,2)-tetraimidazola-4,14,25,35(4,2)-tetrapyrrolacyclodotetracontaphane-19,40-diaminium ; _pdbx_entity_nonpoly.comp_id A1LYO # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DC n 1 3 CBR n 1 4 DG n 1 5 DA n 1 6 DG n 1 7 DC n 1 8 DA n 1 9 DG n 1 10 DC n 1 11 DA n 1 12 DC n 1 13 DG n 1 14 DG n 1 15 DC n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 15 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A1LYO non-polymer . ;(1^2Z,4^2Z,11^2Z,14^2Z,22^2Z,25^2Z,32^2Z,35^2Z,19R,40R)-1^1,4^1,11^1,14^1,22^1,25^1,32^1,35^1-octamethyl-2,5,9,12,15,20,23,26,30,33,36,41-dodecaoxo-1^1H,4^1H,11^1H,14^1H,22^1H,25^1H,32^1H,35^1H-3,6,10,13,16,21,24,27,31,34,37,42-dodecaaza-1(2,4),11,22,32(4,2)-tetraimidazola-4,14,25,35(4,2)-tetrapyrrolacyclodotetracontaphane-19,40-diaminium ; ? 'C58 H70 N26 O12' 1323.343 CBR 'DNA linking' n "5-BROMO-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 Br N3 O7 P' 386.093 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG DG A . n A 1 2 DC 2 2 2 DC DC A . n A 1 3 CBR 3 3 3 CBR CBR A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DA 5 5 5 DA DA A . n A 1 6 DG 6 6 6 DG DG A . n A 1 7 DC 7 7 7 DC DC A . n A 1 8 DA 8 8 8 DA DA A . n A 1 9 DG 9 9 9 DG DG A . n A 1 10 DC 10 10 10 DC DC A . n A 1 11 DA 11 11 11 DA DA A . n A 1 12 DC 12 12 12 DC DC A . n A 1 13 DG 13 13 13 DG DG A . n A 1 14 DG 14 14 14 DG DG A . n A 1 15 DC 15 15 15 DC DC A . n B 1 1 DG 1 1 1 DG DG B . n B 1 2 DC 2 2 2 DC DC B . n B 1 3 CBR 3 3 3 CBR CBR B . n B 1 4 DG 4 4 4 DG DG B . n B 1 5 DA 5 5 5 DA DA B . n B 1 6 DG 6 6 6 DG DG B . n B 1 7 DC 7 7 7 DC DC B . n B 1 8 DA 8 8 8 DA DA B . n B 1 9 DG 9 9 9 DG DG B . n B 1 10 DC 10 10 10 DC DC B . n B 1 11 DA 11 11 11 DA DA B . n B 1 12 DC 12 12 12 DC DC B . n B 1 13 DG 13 13 13 DG DG B . n B 1 14 DG 14 14 14 DG DG B . n B 1 15 DC 15 15 15 DC DC B . n C 1 1 DG 1 1 1 DG DG C . n C 1 2 DC 2 2 2 DC DC C . n C 1 3 CBR 3 3 3 CBR CBR C . n C 1 4 DG 4 4 4 DG DG C . n C 1 5 DA 5 5 5 DA DA C . n C 1 6 DG 6 6 6 DG DG C . n C 1 7 DC 7 7 7 DC DC C . n C 1 8 DA 8 8 8 DA DA C . n C 1 9 DG 9 9 9 DG DG C . n C 1 10 DC 10 10 10 DC DC C . n C 1 11 DA 11 11 11 DA DA C . n C 1 12 DC 12 12 12 DC DC C . n C 1 13 DG 13 13 13 DG DG C . n C 1 14 DG 14 14 14 DG DG C . n C 1 15 DC 15 15 15 DC DC C . n D 1 1 DG 1 1 1 DG DG D . n D 1 2 DC 2 2 2 DC DC D . n D 1 3 CBR 3 3 3 CBR CBR D . n D 1 4 DG 4 4 4 DG DG D . n D 1 5 DA 5 5 5 DA DA D . n D 1 6 DG 6 6 6 DG DG D . n D 1 7 DC 7 7 7 DC DC D . n D 1 8 DA 8 8 8 DA DA D . n D 1 9 DG 9 9 9 DG DG D . n D 1 10 DC 10 10 10 DC DC D . n D 1 11 DA 11 11 11 DA DA D . n D 1 12 DC 12 12 12 DC DC D . n D 1 13 DG 13 13 13 DG DG D . n D 1 14 DG 14 14 14 DG DG D . n D 1 15 DC 15 15 15 DC DC D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 A1LYO 1 101 1 A1LYO 4U2 B . F 2 A1LYO 1 101 1 A1LYO 4U2 C . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.20.1_4487 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? SOLVE ? ? ? . 4 # _cell.volume 232743.034 _cell.length_a 27.186 _cell.length_b 44.051 _cell.length_c 194.346 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.angle_alpha 90.000 _cell.entry_id 8WU5 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.Int_Tables_number 19 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.entry_id 8WU5 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8WU5 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.11 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 60.39 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? _exptl_crystal.pdbx_mosaic_method ? _exptl_crystal.pdbx_mosaic_block_size ? _exptl_crystal.pdbx_mosaic_block_size_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'Sodium chloride, Potassium chloride, Sodium cacodylate trihydrate, (+/-)-2-Methyl-2,4-pentanediol, Spermine tetrahydrochloride' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp 293 # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2022-10-14 _diffrn_detector.pdbx_frequency ? _diffrn_detector.id ? _diffrn_detector.number_of_axes ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9192 1.0 2 0.9198 1.0 3 0.9226 1.0 4 0.9100 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SPRING-8 BEAMLINE BL41XU' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list '0.9192, 0.9198, 0.9226, 0.9100' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL41XU _diffrn_source.pdbx_synchrotron_site SPring-8 # _reflns.B_iso_Wilson_estimate 115.53 _reflns.entry_id 8WU5 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.80 _reflns.d_resolution_low 48.59 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 6280 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 100.0 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 74.5 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 20.18 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 1.0 _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_CC_split_method ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_1_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_2_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[1] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[2] ? _reflns.pdbx_aniso_diffraction_limit_axis_3_ortho[3] ? _reflns.pdbx_aniso_diffraction_limit_1 ? _reflns.pdbx_aniso_diffraction_limit_2 ? _reflns.pdbx_aniso_diffraction_limit_3 ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_1_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_2_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[1] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[2] ? _reflns.pdbx_aniso_B_tensor_eigenvector_3_ortho[3] ? _reflns.pdbx_aniso_B_tensor_eigenvalue_1 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_2 ? _reflns.pdbx_aniso_B_tensor_eigenvalue_3 ? _reflns.pdbx_orthogonalization_convention ? _reflns.pdbx_percent_possible_ellipsoidal ? _reflns.pdbx_percent_possible_spherical ? _reflns.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns.pdbx_percent_possible_spherical_anomalous ? _reflns.pdbx_redundancy_anomalous ? _reflns.pdbx_CC_half_anomalous ? _reflns.pdbx_absDiff_over_sigma_anomalous ? _reflns.pdbx_percent_possible_anomalous ? _reflns.pdbx_observed_signal_threshold ? _reflns.pdbx_signal_type ? _reflns.pdbx_signal_details ? _reflns.pdbx_signal_software_id ? # _reflns_shell.d_res_high 2.80 _reflns_shell.d_res_low 2.97 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 0.56 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 973 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 9.768 _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.832 _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 9.704 _reflns_shell.pdbx_percent_possible_ellipsoidal ? _reflns_shell.pdbx_percent_possible_spherical ? _reflns_shell.pdbx_percent_possible_ellipsoidal_anomalous ? _reflns_shell.pdbx_percent_possible_spherical_anomalous ? _reflns_shell.pdbx_redundancy_anomalous ? _reflns_shell.pdbx_CC_half_anomalous ? _reflns_shell.pdbx_absDiff_over_sigma_anomalous ? _reflns_shell.pdbx_percent_possible_anomalous ? # _refine.ls_percent_reflns_R_free 4.63 _refine.pdbx_overall_phase_error 45.7395 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_R_factor_obs 0.2847 _refine.B_iso_mean 165.08 _refine.ls_number_reflns_R_free 279 _refine.ls_percent_reflns_obs 96.06 _refine.ls_R_factor_R_work 0.2842 _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.ls_d_res_high 2.80 _refine.ls_number_reflns_obs 6030 _refine.pdbx_ls_sigma_F 1.98 _refine.ls_number_reflns_R_work 5751 _refine.ls_d_res_low 48.59 _refine.pdbx_stereochemistry_target_values 'GeoStd + Monomer Library + CDL v1.2' _refine.ls_R_factor_R_free 0.2966 _refine.overall_SU_ML 0.2046 _refine.pdbx_solvent_vdw_probe_radii 1.1000 _refine.entry_id 8WU5 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_ion_probe_radii ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1228 _refine_hist.pdbx_number_atoms_ligand 192 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1420 _refine_hist.d_res_high 2.80 _refine_hist.d_res_low 48.59 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.dev_ideal_target 'X-RAY DIFFRACTION' f_bond_d 1588 0.0124 ? ? ? 'X-RAY DIFFRACTION' f_angle_d 2424 1.2511 ? ? ? 'X-RAY DIFFRACTION' f_chiral_restr 236 0.0641 ? ? ? 'X-RAY DIFFRACTION' f_plane_restr 76 0.0072 ? ? ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 792 32.1740 ? ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' 2.80 2.90 567 0.5857 99.00 0.5566 27 . . . . . . . 'X-RAY DIFFRACTION' 2.90 3.02 587 0.5358 97.44 0.5743 22 . . . . . . . 'X-RAY DIFFRACTION' 3.02 3.15 552 0.4608 96.95 0.4119 20 . . . . . . . 'X-RAY DIFFRACTION' 3.15 3.32 537 0.4301 91.28 0.5057 28 . . . . . . . 'X-RAY DIFFRACTION' 3.32 3.53 508 0.4574 87.77 0.5060 23 . . . . . . . 'X-RAY DIFFRACTION' 3.53 3.80 550 0.4216 94.80 0.3646 33 . . . . . . . 'X-RAY DIFFRACTION' 3.80 4.18 561 0.3673 96.47 0.3583 40 . . . . . . . 'X-RAY DIFFRACTION' 4.18 4.79 594 0.3807 97.98 0.2811 35 . . . . . . . 'X-RAY DIFFRACTION' 4.79 6.03 612 0.2881 99.69 0.3372 26 . . . . . . . 'X-RAY DIFFRACTION' 6.03 48.59 683 0.1944 99.02 0.1732 25 . . . . . . . # _struct.entry_id 8WU5 _struct.title 'The complex of CAG repeat sequence-specific binding cPIP and dsDNA with A-A mismatch' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8WU5 _struct_keywords.text 'DNA minor groove binder Pyrrole imidazole polyamide A-A mismatch DNA CAG repeat, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8WU5 _struct_ref.pdbx_db_accession 8WU5 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8WU5 A 1 ? 15 ? 8WU5 1 ? 15 ? 1 15 2 1 8WU5 B 1 ? 15 ? 8WU5 1 ? 15 ? 1 15 3 1 8WU5 C 1 ? 15 ? 8WU5 1 ? 15 ? 1 15 4 1 8WU5 D 1 ? 15 ? 8WU5 1 ? 15 ? 1 15 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 author_and_software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3130 ? 1 MORE 8 ? 1 'SSA (A^2)' 5110 ? 2 'ABSA (A^2)' 3140 ? 2 MORE 5 ? 2 'SSA (A^2)' 5210 ? # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E 2 1 C,D,F # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'native gel electrophoresis' _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DC 2 "O3'" ? ? ? 1_555 A CBR 3 P ? ? A DC 2 A CBR 3 1_555 ? ? ? ? ? ? ? 1.604 ? ? covale2 covale both ? A CBR 3 "O3'" ? ? ? 1_555 A DG 4 P ? ? A CBR 3 A DG 4 1_555 ? ? ? ? ? ? ? 1.613 ? ? covale3 covale both ? B DC 2 "O3'" ? ? ? 1_555 B CBR 3 P ? ? B DC 2 B CBR 3 1_555 ? ? ? ? ? ? ? 1.621 ? ? covale4 covale both ? B CBR 3 "O3'" ? ? ? 1_555 B DG 4 P ? ? B CBR 3 B DG 4 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale5 covale both ? C DC 2 "O3'" ? ? ? 1_555 C CBR 3 P ? ? C DC 2 C CBR 3 1_555 ? ? ? ? ? ? ? 1.627 ? ? covale6 covale both ? C CBR 3 "O3'" ? ? ? 1_555 C DG 4 P ? ? C CBR 3 C DG 4 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale7 covale both ? D DC 2 "O3'" ? ? ? 1_555 D CBR 3 P ? ? D DC 2 D CBR 3 1_555 ? ? ? ? ? ? ? 1.596 ? ? covale8 covale both ? D CBR 3 "O3'" ? ? ? 1_555 D DG 4 P ? ? D CBR 3 D DG 4 1_555 ? ? ? ? ? ? ? 1.611 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 15 N3 ? ? A DG 1 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 15 O2 ? ? A DG 1 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 15 N4 ? ? A DG 1 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 14 N1 ? ? A DC 2 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 14 O6 ? ? A DC 2 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 14 N2 ? ? A DC 2 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A CBR 3 N3 ? ? ? 1_555 B DG 13 N1 ? ? A CBR 3 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A CBR 3 N4 ? ? ? 1_555 B DG 13 O6 ? ? A CBR 3 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A CBR 3 O2 ? ? ? 1_555 B DG 13 N2 ? ? A CBR 3 B DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 12 N3 ? ? A DG 4 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 12 O2 ? ? A DG 4 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 12 N4 ? ? A DG 4 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DA 11 N6 ? ? A DA 5 B DA 11 1_555 ? ? ? ? ? ? 'DA-DA MISPAIR' ? ? ? hydrog14 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 10 N3 ? ? A DG 6 B DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 10 O2 ? ? A DG 6 B DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 10 N4 ? ? A DG 6 B DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 9 N1 ? ? A DC 7 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 9 O6 ? ? A DC 7 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 9 N2 ? ? A DC 7 B DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DG 9 N1 ? ? ? 1_555 B DC 7 N3 ? ? A DG 9 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 9 N2 ? ? ? 1_555 B DC 7 O2 ? ? A DG 9 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 9 O6 ? ? ? 1_555 B DC 7 N4 ? ? A DG 9 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 10 N3 ? ? ? 1_555 B DG 6 N1 ? ? A DC 10 B DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 10 N4 ? ? ? 1_555 B DG 6 O6 ? ? A DC 10 B DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 10 O2 ? ? ? 1_555 B DG 6 N2 ? ? A DC 10 B DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 12 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 12 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 12 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 12 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 12 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 12 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DG 13 N1 ? ? ? 1_555 B CBR 3 N3 ? ? A DG 13 B CBR 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DG 13 N2 ? ? ? 1_555 B CBR 3 O2 ? ? A DG 13 B CBR 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DG 13 O6 ? ? ? 1_555 B CBR 3 N4 ? ? A DG 13 B CBR 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DG 14 N1 ? ? ? 1_555 B DC 2 N3 ? ? A DG 14 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DG 14 N2 ? ? ? 1_555 B DC 2 O2 ? ? A DG 14 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DG 14 O6 ? ? ? 1_555 B DC 2 N4 ? ? A DG 14 B DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DC 15 N3 ? ? ? 1_555 B DG 1 N1 ? ? A DC 15 B DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DC 15 N4 ? ? ? 1_555 B DG 1 O6 ? ? A DC 15 B DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DC 15 O2 ? ? ? 1_555 B DG 1 N2 ? ? A DC 15 B DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C DG 1 N1 ? ? ? 1_555 D DC 15 N3 ? ? C DG 1 D DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? C DG 1 N2 ? ? ? 1_555 D DC 15 O2 ? ? C DG 1 D DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? C DG 1 O6 ? ? ? 1_555 D DC 15 N4 ? ? C DG 1 D DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? C DC 2 N3 ? ? ? 1_555 D DG 14 N1 ? ? C DC 2 D DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? C DC 2 N4 ? ? ? 1_555 D DG 14 O6 ? ? C DC 2 D DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? C DC 2 O2 ? ? ? 1_555 D DG 14 N2 ? ? C DC 2 D DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? C CBR 3 N3 ? ? ? 1_555 D DG 13 N1 ? ? C CBR 3 D DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? C CBR 3 N4 ? ? ? 1_555 D DG 13 O6 ? ? C CBR 3 D DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? C CBR 3 O2 ? ? ? 1_555 D DG 13 N2 ? ? C CBR 3 D DG 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? C DG 4 N1 ? ? ? 1_555 D DC 12 N3 ? ? C DG 4 D DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? C DG 4 N2 ? ? ? 1_555 D DC 12 O2 ? ? C DG 4 D DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? C DG 4 O6 ? ? ? 1_555 D DC 12 N4 ? ? C DG 4 D DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? C DA 5 N1 ? ? ? 1_555 D DA 11 N6 ? ? C DA 5 D DA 11 1_555 ? ? ? ? ? ? 'DA-DA MISPAIR' ? ? ? hydrog51 hydrog ? ? C DG 6 N1 ? ? ? 1_555 D DG 9 O6 ? ? C DG 6 D DG 9 1_555 ? ? ? ? ? ? TYPE_3_PAIR ? ? ? hydrog52 hydrog ? ? C DG 6 O6 ? ? ? 1_555 D DG 9 N1 ? ? C DG 6 D DG 9 1_555 ? ? ? ? ? ? TYPE_3_PAIR ? ? ? hydrog53 hydrog ? ? C DG 6 N1 ? ? ? 1_555 D DC 10 N3 ? ? C DG 6 D DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? C DG 6 N2 ? ? ? 1_555 D DC 10 O2 ? ? C DG 6 D DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? C DG 6 O6 ? ? ? 1_555 D DC 10 N4 ? ? C DG 6 D DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? C DC 7 N3 ? ? ? 1_555 D DG 9 N1 ? ? C DC 7 D DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? C DC 7 N4 ? ? ? 1_555 D DG 9 O6 ? ? C DC 7 D DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? C DC 7 O2 ? ? ? 1_555 D DG 9 N2 ? ? C DC 7 D DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? C DG 9 N1 ? ? ? 1_555 D DC 7 N3 ? ? C DG 9 D DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? C DG 9 N2 ? ? ? 1_555 D DC 7 O2 ? ? C DG 9 D DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? C DG 9 O6 ? ? ? 1_555 D DC 7 N4 ? ? C DG 9 D DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? C DC 10 N3 ? ? ? 1_555 D DG 6 N1 ? ? C DC 10 D DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? C DC 10 N4 ? ? ? 1_555 D DG 6 O6 ? ? C DC 10 D DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? C DC 10 O2 ? ? ? 1_555 D DG 6 N2 ? ? C DC 10 D DG 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? C DC 12 N3 ? ? ? 1_555 D DG 4 N1 ? ? C DC 12 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? C DC 12 N4 ? ? ? 1_555 D DG 4 O6 ? ? C DC 12 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? C DC 12 O2 ? ? ? 1_555 D DG 4 N2 ? ? C DC 12 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? C DG 13 N1 ? ? ? 1_555 D CBR 3 N3 ? ? C DG 13 D CBR 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? C DG 13 N2 ? ? ? 1_555 D CBR 3 O2 ? ? C DG 13 D CBR 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? C DG 13 O6 ? ? ? 1_555 D CBR 3 N4 ? ? C DG 13 D CBR 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? C DG 14 N1 ? ? ? 1_555 D DC 2 N3 ? ? C DG 14 D DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? C DG 14 N2 ? ? ? 1_555 D DC 2 O2 ? ? C DG 14 D DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? C DG 14 O6 ? ? ? 1_555 D DC 2 N4 ? ? C DG 14 D DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? C DC 15 N3 ? ? ? 1_555 D DG 1 N1 ? ? C DC 15 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? C DC 15 N4 ? ? ? 1_555 D DG 1 O6 ? ? C DC 15 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? C DC 15 O2 ? ? ? 1_555 D DG 1 N2 ? ? C DC 15 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" A DA 5 ? ? "C3'" A DA 5 ? ? 1.380 1.419 -0.039 0.006 N 2 1 "O3'" A DC 10 ? ? "C3'" A DC 10 ? ? 1.378 1.419 -0.041 0.006 N 3 1 "O3'" B DC 12 ? ? "C3'" B DC 12 ? ? 1.383 1.419 -0.036 0.006 N 4 1 "O3'" C DG 6 ? ? "C3'" C DG 6 ? ? 1.380 1.419 -0.039 0.006 N 5 1 "O3'" C DC 12 ? ? "C3'" C DC 12 ? ? 1.359 1.419 -0.060 0.006 N 6 1 "O3'" D DA 5 ? ? "C3'" D DA 5 ? ? 1.372 1.419 -0.047 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N1 B DC 7 ? ? C2 B DC 7 ? ? O2 B DC 7 ? ? 123.03 118.90 4.13 0.60 N 2 1 "O4'" C DC 2 ? ? "C1'" C DC 2 ? ? N1 C DC 2 ? ? 110.15 108.30 1.85 0.30 N 3 1 "O4'" C DG 6 ? ? "C1'" C DG 6 ? ? N9 C DG 6 ? ? 111.44 108.30 3.14 0.30 N 4 1 "O4'" C DA 8 ? ? "C1'" C DA 8 ? ? N9 C DA 8 ? ? 111.46 108.30 3.16 0.30 N 5 1 "O4'" D DG 1 ? ? "C1'" D DG 1 ? ? N9 D DG 1 ? ? 110.79 108.30 2.49 0.30 N 6 1 "O4'" D DC 12 ? ? "C1'" D DC 12 ? ? N1 D DC 12 ? ? 110.82 108.30 2.52 0.30 N # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 x+1/2,-y+1/2,-z 3 -x,y+1/2,-z+1/2 4 -x+1/2,-y,z+1/2 # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] 'X-RAY DIFFRACTION' 1 ? refined -13.1328 -47.0290 28.0930 2.2258 2.4525 0.7608 0.0519 -0.1344 -0.0839 0.4133 0.2815 0.1993 0.4978 0.3174 0.1946 0.1603 0.1274 -0.3329 0.1839 -1.6647 0.1940 0.5109 0.0664 1.3261 'X-RAY DIFFRACTION' 2 ? refined -11.1090 -48.6174 28.6142 2.0309 2.1419 0.8031 0.1340 0.1955 0.1814 1.8793 2.3240 5.9989 -0.7358 1.1138 2.7574 -0.9133 0.1381 0.5805 -0.9053 -0.8771 -0.1048 2.0528 -1.0540 1.5422 'X-RAY DIFFRACTION' 3 ? refined -2.3452 -48.4588 76.4157 2.0348 2.5200 0.8380 -0.2974 0.1942 0.0494 3.2187 1.6097 1.3408 0.4738 -1.8035 -0.9886 -1.0227 0.3856 -0.0929 1.4329 -0.3675 0.7022 1.4007 0.4135 1.1920 'X-RAY DIFFRACTION' 4 ? refined -0.7910 -46.4511 76.9281 2.2618 2.6343 0.7984 0.2349 -0.0792 0.1174 1.9446 2.5230 0.4530 1.3868 0.8559 0.9612 -0.8150 0.0816 -0.1083 0.5902 -1.8362 0.4095 0.3314 0.0766 1.9206 'X-RAY DIFFRACTION' 5 ? refined -15.4836 -51.7546 28.5150 1.4259 1.6664 2.2079 0.2151 1.4721 -1.2603 0.0756 0.8633 1.2602 0.0544 0.2799 0.7108 -0.2368 -0.1674 -0.1102 0.1827 0.2177 0.2139 0.8593 0.5206 0.1458 'X-RAY DIFFRACTION' 6 ? refined 2.4284 -50.8114 76.4343 0.8261 1.1283 1.6657 -0.4298 0.2534 0.5396 3.4033 4.6560 4.1313 -3.8902 -1.6817 1.7961 -0.6070 0.8846 -0.6629 -0.1059 -0.5234 -2.4402 1.5848 -1.0938 0.6855 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.selection_details 'X-RAY DIFFRACTION' 1 1 ? ? ? ? ? ? ? ? ? ;chain 'A' and (resid 1 through 15 ) ; 'X-RAY DIFFRACTION' 2 2 ? ? ? ? ? ? ? ? ? ;chain 'B' and (resid 1 through 15 ) ; 'X-RAY DIFFRACTION' 3 3 ? ? ? ? ? ? ? ? ? ;chain 'C' and (resid 1 through 15 ) ; 'X-RAY DIFFRACTION' 4 4 ? ? ? ? ? ? ? ? ? ;chain 'D' and (resid 1 through 15 ) ; 'X-RAY DIFFRACTION' 5 5 ? ? ? ? ? ? ? ? ? ;chain 'B' and resid 101 ; 'X-RAY DIFFRACTION' 6 6 ? ? ? ? ? ? ? ? ? ;chain 'C' and resid 101 ; # _pdbx_entry_details.entry_id 8WU5 _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A1LYO O1 O N N 1 A1LYO C1 C Y N 2 A1LYO C2 C Y N 3 A1LYO C3 C Y N 4 A1LYO C4 C N N 5 A1LYO C5 C Y N 6 A1LYO C6 C N N 7 A1LYO O2 O N N 8 A1LYO O3 O N N 9 A1LYO O4 O N N 10 A1LYO O5 O N N 11 A1LYO O6 O N N 12 A1LYO N N N N 13 A1LYO C C N N 14 A1LYO O O N N 15 A1LYO C10 C Y N 16 A1LYO C12 C N N 17 A1LYO C13 C Y N 18 A1LYO C14 C Y N 19 A1LYO C15 C N N 20 A1LYO C16 C Y N 21 A1LYO C17 C N N 22 A1LYO C18 C Y N 23 A1LYO C19 C Y N 24 A1LYO C20 C Y N 25 A1LYO C21 C N N 26 A1LYO C22 C N N 27 A1LYO C23 C N R 28 A1LYO C24 C N N 29 A1LYO C25 C N N 30 A1LYO C26 C N N 31 A1LYO C27 C Y N 32 A1LYO C28 C Y N 33 A1LYO C29 C Y N 34 A1LYO C30 C N N 35 A1LYO C31 C Y N 36 A1LYO C32 C N N 37 A1LYO C34 C Y N 38 A1LYO C35 C Y N 39 A1LYO C36 C N N 40 A1LYO C37 C Y N 41 A1LYO C38 C N N 42 A1LYO C39 C Y N 43 A1LYO C40 C Y N 44 A1LYO C41 C N N 45 A1LYO C42 C Y N 46 A1LYO C43 C N N 47 A1LYO C44 C Y N 48 A1LYO C45 C Y N 49 A1LYO C46 C Y N 50 A1LYO C47 C N N 51 A1LYO C48 C N N 52 A1LYO C49 C N R 53 A1LYO C50 C N N 54 A1LYO C51 C N N 55 A1LYO C7 C Y N 56 A1LYO C8 C Y N 57 A1LYO C82 C N N 58 A1LYO C83 C N N 59 A1LYO C84 C N N 60 A1LYO C87 C N N 61 A1LYO C88 C N N 62 A1LYO C89 C N N 63 A1LYO C9 C N N 64 A1LYO C90 C Y N 65 A1LYO C95 C Y N 66 A1LYO N1 N Y N 67 A1LYO N10 N N N 68 A1LYO N11 N N N 69 A1LYO N12 N N N 70 A1LYO N13 N Y N 71 A1LYO N14 N N N 72 A1LYO N15 N Y N 73 A1LYO N16 N N N 74 A1LYO N17 N Y N 75 A1LYO N19 N N N 76 A1LYO N2 N N N 77 A1LYO N20 N Y N 78 A1LYO N21 N Y N 79 A1LYO N22 N N N 80 A1LYO N23 N N N 81 A1LYO N3 N Y N 82 A1LYO N4 N N N 83 A1LYO N5 N Y N 84 A1LYO N7 N N N 85 A1LYO N8 N Y N 86 A1LYO N81 N N N 87 A1LYO N86 N N N 88 A1LYO N9 N Y N 89 A1LYO N90 N Y N 90 A1LYO N91 N Y N 91 A1LYO O7 O N N 92 A1LYO O8 O N N 93 A1LYO O85 O N N 94 A1LYO O9 O N N 95 A1LYO O90 O N N 96 A1LYO H1 H N N 97 A1LYO H2 H N N 98 A1LYO H3 H N N 99 A1LYO H4 H N N 100 A1LYO H5 H N N 101 A1LYO H6 H N N 102 A1LYO H7 H N N 103 A1LYO H8 H N N 104 A1LYO H9 H N N 105 A1LYO H10 H N N 106 A1LYO H11 H N N 107 A1LYO H12 H N N 108 A1LYO H13 H N N 109 A1LYO H14 H N N 110 A1LYO H15 H N N 111 A1LYO H16 H N N 112 A1LYO H17 H N N 113 A1LYO H18 H N N 114 A1LYO H19 H N N 115 A1LYO H20 H N N 116 A1LYO H21 H N N 117 A1LYO H22 H N N 118 A1LYO H23 H N N 119 A1LYO H24 H N N 120 A1LYO H25 H N N 121 A1LYO H26 H N N 122 A1LYO H27 H N N 123 A1LYO H28 H N N 124 A1LYO H29 H N N 125 A1LYO H30 H N N 126 A1LYO H31 H N N 127 A1LYO H32 H N N 128 A1LYO H33 H N N 129 A1LYO H34 H N N 130 A1LYO H35 H N N 131 A1LYO H36 H N N 132 A1LYO H37 H N N 133 A1LYO H38 H N N 134 A1LYO H39 H N N 135 A1LYO H40 H N N 136 A1LYO H41 H N N 137 A1LYO H42 H N N 138 A1LYO H43 H N N 139 A1LYO H44 H N N 140 A1LYO H45 H N N 141 A1LYO H46 H N N 142 A1LYO H47 H N N 143 A1LYO H48 H N N 144 A1LYO H49 H N N 145 A1LYO H50 H N N 146 A1LYO H51 H N N 147 A1LYO H52 H N N 148 A1LYO H53 H N N 149 A1LYO H54 H N N 150 A1LYO H55 H N N 151 A1LYO H56 H N N 152 A1LYO H57 H N N 153 A1LYO H58 H N N 154 A1LYO H60 H N N 155 A1LYO H61 H N N 156 A1LYO H62 H N N 157 A1LYO H63 H N N 158 A1LYO H64 H N N 159 A1LYO H65 H N N 160 A1LYO H66 H N N 161 A1LYO H67 H N N 162 A1LYO H69 H N N 163 A1LYO H70 H N N 164 A1LYO H71 H N N 165 A1LYO H72 H N N 166 CBR BR BR N N 167 CBR P P N N 168 CBR OP1 O N N 169 CBR OP2 O N N 170 CBR "O5'" O N N 171 CBR N1 N N N 172 CBR C6 C N N 173 CBR C2 C N N 174 CBR O2 O N N 175 CBR N3 N N N 176 CBR C4 C N N 177 CBR N4 N N N 178 CBR C5 C N N 179 CBR "C2'" C N N 180 CBR "C5'" C N N 181 CBR "C4'" C N R 182 CBR "O4'" O N N 183 CBR "C1'" C N R 184 CBR "C3'" C N S 185 CBR "O3'" O N N 186 CBR OP3 O N N 187 CBR HOP2 H N N 188 CBR H6 H N N 189 CBR H41 H N N 190 CBR H42 H N N 191 CBR "H2'" H N N 192 CBR "H2''" H N N 193 CBR "H5'" H N N 194 CBR "H5''" H N N 195 CBR "H4'" H N N 196 CBR "H1'" H N N 197 CBR "H3'" H N N 198 CBR "HO3'" H N N 199 CBR HOP3 H N N 200 DA OP3 O N N 201 DA P P N N 202 DA OP1 O N N 203 DA OP2 O N N 204 DA "O5'" O N N 205 DA "C5'" C N N 206 DA "C4'" C N R 207 DA "O4'" O N N 208 DA "C3'" C N S 209 DA "O3'" O N N 210 DA "C2'" C N N 211 DA "C1'" C N R 212 DA N9 N Y N 213 DA C8 C Y N 214 DA N7 N Y N 215 DA C5 C Y N 216 DA C6 C Y N 217 DA N6 N N N 218 DA N1 N Y N 219 DA C2 C Y N 220 DA N3 N Y N 221 DA C4 C Y N 222 DA HOP3 H N N 223 DA HOP2 H N N 224 DA "H5'" H N N 225 DA "H5''" H N N 226 DA "H4'" H N N 227 DA "H3'" H N N 228 DA "HO3'" H N N 229 DA "H2'" H N N 230 DA "H2''" H N N 231 DA "H1'" H N N 232 DA H8 H N N 233 DA H61 H N N 234 DA H62 H N N 235 DA H2 H N N 236 DC OP3 O N N 237 DC P P N N 238 DC OP1 O N N 239 DC OP2 O N N 240 DC "O5'" O N N 241 DC "C5'" C N N 242 DC "C4'" C N R 243 DC "O4'" O N N 244 DC "C3'" C N S 245 DC "O3'" O N N 246 DC "C2'" C N N 247 DC "C1'" C N R 248 DC N1 N N N 249 DC C2 C N N 250 DC O2 O N N 251 DC N3 N N N 252 DC C4 C N N 253 DC N4 N N N 254 DC C5 C N N 255 DC C6 C N N 256 DC HOP3 H N N 257 DC HOP2 H N N 258 DC "H5'" H N N 259 DC "H5''" H N N 260 DC "H4'" H N N 261 DC "H3'" H N N 262 DC "HO3'" H N N 263 DC "H2'" H N N 264 DC "H2''" H N N 265 DC "H1'" H N N 266 DC H41 H N N 267 DC H42 H N N 268 DC H5 H N N 269 DC H6 H N N 270 DG OP3 O N N 271 DG P P N N 272 DG OP1 O N N 273 DG OP2 O N N 274 DG "O5'" O N N 275 DG "C5'" C N N 276 DG "C4'" C N R 277 DG "O4'" O N N 278 DG "C3'" C N S 279 DG "O3'" O N N 280 DG "C2'" C N N 281 DG "C1'" C N R 282 DG N9 N Y N 283 DG C8 C Y N 284 DG N7 N Y N 285 DG C5 C Y N 286 DG C6 C N N 287 DG O6 O N N 288 DG N1 N N N 289 DG C2 C N N 290 DG N2 N N N 291 DG N3 N N N 292 DG C4 C Y N 293 DG HOP3 H N N 294 DG HOP2 H N N 295 DG "H5'" H N N 296 DG "H5''" H N N 297 DG "H4'" H N N 298 DG "H3'" H N N 299 DG "HO3'" H N N 300 DG "H2'" H N N 301 DG "H2''" H N N 302 DG "H1'" H N N 303 DG H8 H N N 304 DG H1 H N N 305 DG H21 H N N 306 DG H22 H N N 307 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A1LYO C30 N13 sing N N 1 A1LYO N13 C29 sing Y N 2 A1LYO N13 C31 sing Y N 3 A1LYO C29 C27 doub Y N 4 A1LYO C27 C28 sing Y N 5 A1LYO C27 N14 sing N N 6 A1LYO C28 C31 doub Y N 7 A1LYO C31 C26 sing N N 8 A1LYO C26 O5 doub N N 9 A1LYO C26 N12 sing N N 10 A1LYO N12 C51 sing N N 11 A1LYO C51 C50 sing N N 12 A1LYO C50 C49 sing N N 13 A1LYO C49 N23 sing N N 14 A1LYO C49 C22 sing N N 15 A1LYO C22 O4 doub N N 16 A1LYO C22 N10 sing N N 17 A1LYO N10 C19 sing N N 18 A1LYO C19 N9 sing Y N 19 A1LYO C19 C20 doub Y N 20 A1LYO N9 C18 doub Y N 21 A1LYO C20 N8 sing Y N 22 A1LYO N8 C21 sing N N 23 A1LYO N8 C18 sing Y N 24 A1LYO C18 C17 sing N N 25 A1LYO C17 O3 doub N N 26 A1LYO C17 N7 sing N N 27 A1LYO N7 C13 sing N N 28 A1LYO C13 C90 sing Y N 29 A1LYO C13 C14 doub Y N 30 A1LYO C90 C16 doub Y N 31 A1LYO C14 N5 sing Y N 32 A1LYO N5 C15 sing N N 33 A1LYO N5 C16 sing Y N 34 A1LYO C16 C12 sing N N 35 A1LYO C12 O2 doub N N 36 A1LYO C12 N86 sing N N 37 A1LYO N86 C87 sing N N 38 A1LYO C87 C88 sing N N 39 A1LYO C88 C89 sing N N 40 A1LYO C89 O90 doub N N 41 A1LYO C89 N4 sing N N 42 A1LYO N4 C7 sing N N 43 A1LYO C7 N91 sing Y N 44 A1LYO C7 C8 doub Y N 45 A1LYO N91 C10 doub Y N 46 A1LYO C8 N3 sing Y N 47 A1LYO N3 C9 sing N N 48 A1LYO N3 C10 sing Y N 49 A1LYO C10 C6 sing N N 50 A1LYO C6 O1 doub N N 51 A1LYO C6 N2 sing N N 52 A1LYO N2 C1 sing N N 53 A1LYO C1 C2 sing Y N 54 A1LYO C1 C3 doub Y N 55 A1LYO C2 C5 doub Y N 56 A1LYO C3 N1 sing Y N 57 A1LYO N1 C4 sing N N 58 A1LYO N1 C5 sing Y N 59 A1LYO C5 C sing N N 60 A1LYO C O doub N N 61 A1LYO C N sing N N 62 A1LYO N C25 sing N N 63 A1LYO C25 C24 sing N N 64 A1LYO C24 C23 sing N N 65 A1LYO C23 N11 sing N N 66 A1LYO C23 C48 sing N N 67 A1LYO C48 O9 doub N N 68 A1LYO C48 N22 sing N N 69 A1LYO N22 C45 sing N N 70 A1LYO C45 N21 sing Y N 71 A1LYO C45 C46 doub Y N 72 A1LYO N21 C44 doub Y N 73 A1LYO C46 N20 sing Y N 74 A1LYO N20 C47 sing N N 75 A1LYO N20 C44 sing Y N 76 A1LYO C44 C43 sing N N 77 A1LYO C43 O8 doub N N 78 A1LYO C43 N19 sing N N 79 A1LYO N19 C39 sing N N 80 A1LYO C39 C95 sing Y N 81 A1LYO C39 C40 doub Y N 82 A1LYO C95 C42 doub Y N 83 A1LYO C40 N17 sing Y N 84 A1LYO N17 C41 sing N N 85 A1LYO N17 C42 sing Y N 86 A1LYO C42 C38 sing N N 87 A1LYO C38 O7 doub N N 88 A1LYO C38 N81 sing N N 89 A1LYO N81 C82 sing N N 90 A1LYO C82 C83 sing N N 91 A1LYO C83 C84 sing N N 92 A1LYO C84 O85 doub N N 93 A1LYO C84 N16 sing N N 94 A1LYO N16 C34 sing N N 95 A1LYO C34 N90 sing Y N 96 A1LYO C34 C35 doub Y N 97 A1LYO N90 C37 doub Y N 98 A1LYO C35 N15 sing Y N 99 A1LYO N15 C36 sing N N 100 A1LYO N15 C37 sing Y N 101 A1LYO C37 C32 sing N N 102 A1LYO C32 O6 doub N N 103 A1LYO C32 N14 sing N N 104 A1LYO C2 H1 sing N N 105 A1LYO C3 H2 sing N N 106 A1LYO C4 H3 sing N N 107 A1LYO C4 H4 sing N N 108 A1LYO C4 H5 sing N N 109 A1LYO N H6 sing N N 110 A1LYO C14 H7 sing N N 111 A1LYO C15 H8 sing N N 112 A1LYO C15 H9 sing N N 113 A1LYO C15 H10 sing N N 114 A1LYO C20 H11 sing N N 115 A1LYO C21 H12 sing N N 116 A1LYO C21 H13 sing N N 117 A1LYO C21 H14 sing N N 118 A1LYO C23 H15 sing N N 119 A1LYO C24 H16 sing N N 120 A1LYO C24 H17 sing N N 121 A1LYO C25 H18 sing N N 122 A1LYO C25 H19 sing N N 123 A1LYO C28 H20 sing N N 124 A1LYO C29 H21 sing N N 125 A1LYO C30 H22 sing N N 126 A1LYO C30 H23 sing N N 127 A1LYO C30 H24 sing N N 128 A1LYO C35 H25 sing N N 129 A1LYO C36 H26 sing N N 130 A1LYO C36 H27 sing N N 131 A1LYO C36 H28 sing N N 132 A1LYO C40 H29 sing N N 133 A1LYO C41 H30 sing N N 134 A1LYO C41 H31 sing N N 135 A1LYO C41 H32 sing N N 136 A1LYO C46 H33 sing N N 137 A1LYO C47 H34 sing N N 138 A1LYO C47 H35 sing N N 139 A1LYO C47 H36 sing N N 140 A1LYO C49 H37 sing N N 141 A1LYO C50 H38 sing N N 142 A1LYO C50 H39 sing N N 143 A1LYO C51 H40 sing N N 144 A1LYO C51 H41 sing N N 145 A1LYO C8 H42 sing N N 146 A1LYO C82 H43 sing N N 147 A1LYO C82 H44 sing N N 148 A1LYO C83 H45 sing N N 149 A1LYO C83 H46 sing N N 150 A1LYO C87 H47 sing N N 151 A1LYO C87 H48 sing N N 152 A1LYO C88 H49 sing N N 153 A1LYO C88 H50 sing N N 154 A1LYO C9 H51 sing N N 155 A1LYO C9 H52 sing N N 156 A1LYO C9 H53 sing N N 157 A1LYO C90 H54 sing N N 158 A1LYO C95 H55 sing N N 159 A1LYO N10 H56 sing N N 160 A1LYO N11 H57 sing N N 161 A1LYO N11 H58 sing N N 162 A1LYO N12 H60 sing N N 163 A1LYO N14 H61 sing N N 164 A1LYO N16 H62 sing N N 165 A1LYO N19 H63 sing N N 166 A1LYO N2 H64 sing N N 167 A1LYO N22 H65 sing N N 168 A1LYO N23 H66 sing N N 169 A1LYO N23 H67 sing N N 170 A1LYO N4 H69 sing N N 171 A1LYO N7 H70 sing N N 172 A1LYO N81 H71 sing N N 173 A1LYO N86 H72 sing N N 174 CBR BR C5 sing N N 175 CBR P OP1 doub N N 176 CBR P OP2 sing N N 177 CBR P "O5'" sing N N 178 CBR P OP3 sing N N 179 CBR OP2 HOP2 sing N N 180 CBR "O5'" "C5'" sing N N 181 CBR N1 C6 sing N N 182 CBR N1 C2 sing N N 183 CBR N1 "C1'" sing N N 184 CBR C6 C5 doub N N 185 CBR C6 H6 sing N N 186 CBR C2 O2 doub N N 187 CBR C2 N3 sing N N 188 CBR N3 C4 doub N N 189 CBR C4 N4 sing N N 190 CBR C4 C5 sing N N 191 CBR N4 H41 sing N N 192 CBR N4 H42 sing N N 193 CBR "C2'" "C1'" sing N N 194 CBR "C2'" "C3'" sing N N 195 CBR "C2'" "H2'" sing N N 196 CBR "C2'" "H2''" sing N N 197 CBR "C5'" "C4'" sing N N 198 CBR "C5'" "H5'" sing N N 199 CBR "C5'" "H5''" sing N N 200 CBR "C4'" "O4'" sing N N 201 CBR "C4'" "C3'" sing N N 202 CBR "C4'" "H4'" sing N N 203 CBR "O4'" "C1'" sing N N 204 CBR "C1'" "H1'" sing N N 205 CBR "C3'" "O3'" sing N N 206 CBR "C3'" "H3'" sing N N 207 CBR "O3'" "HO3'" sing N N 208 CBR OP3 HOP3 sing N N 209 DA OP3 P sing N N 210 DA OP3 HOP3 sing N N 211 DA P OP1 doub N N 212 DA P OP2 sing N N 213 DA P "O5'" sing N N 214 DA OP2 HOP2 sing N N 215 DA "O5'" "C5'" sing N N 216 DA "C5'" "C4'" sing N N 217 DA "C5'" "H5'" sing N N 218 DA "C5'" "H5''" sing N N 219 DA "C4'" "O4'" sing N N 220 DA "C4'" "C3'" sing N N 221 DA "C4'" "H4'" sing N N 222 DA "O4'" "C1'" sing N N 223 DA "C3'" "O3'" sing N N 224 DA "C3'" "C2'" sing N N 225 DA "C3'" "H3'" sing N N 226 DA "O3'" "HO3'" sing N N 227 DA "C2'" "C1'" sing N N 228 DA "C2'" "H2'" sing N N 229 DA "C2'" "H2''" sing N N 230 DA "C1'" N9 sing N N 231 DA "C1'" "H1'" sing N N 232 DA N9 C8 sing Y N 233 DA N9 C4 sing Y N 234 DA C8 N7 doub Y N 235 DA C8 H8 sing N N 236 DA N7 C5 sing Y N 237 DA C5 C6 sing Y N 238 DA C5 C4 doub Y N 239 DA C6 N6 sing N N 240 DA C6 N1 doub Y N 241 DA N6 H61 sing N N 242 DA N6 H62 sing N N 243 DA N1 C2 sing Y N 244 DA C2 N3 doub Y N 245 DA C2 H2 sing N N 246 DA N3 C4 sing Y N 247 DC OP3 P sing N N 248 DC OP3 HOP3 sing N N 249 DC P OP1 doub N N 250 DC P OP2 sing N N 251 DC P "O5'" sing N N 252 DC OP2 HOP2 sing N N 253 DC "O5'" "C5'" sing N N 254 DC "C5'" "C4'" sing N N 255 DC "C5'" "H5'" sing N N 256 DC "C5'" "H5''" sing N N 257 DC "C4'" "O4'" sing N N 258 DC "C4'" "C3'" sing N N 259 DC "C4'" "H4'" sing N N 260 DC "O4'" "C1'" sing N N 261 DC "C3'" "O3'" sing N N 262 DC "C3'" "C2'" sing N N 263 DC "C3'" "H3'" sing N N 264 DC "O3'" "HO3'" sing N N 265 DC "C2'" "C1'" sing N N 266 DC "C2'" "H2'" sing N N 267 DC "C2'" "H2''" sing N N 268 DC "C1'" N1 sing N N 269 DC "C1'" "H1'" sing N N 270 DC N1 C2 sing N N 271 DC N1 C6 sing N N 272 DC C2 O2 doub N N 273 DC C2 N3 sing N N 274 DC N3 C4 doub N N 275 DC C4 N4 sing N N 276 DC C4 C5 sing N N 277 DC N4 H41 sing N N 278 DC N4 H42 sing N N 279 DC C5 C6 doub N N 280 DC C5 H5 sing N N 281 DC C6 H6 sing N N 282 DG OP3 P sing N N 283 DG OP3 HOP3 sing N N 284 DG P OP1 doub N N 285 DG P OP2 sing N N 286 DG P "O5'" sing N N 287 DG OP2 HOP2 sing N N 288 DG "O5'" "C5'" sing N N 289 DG "C5'" "C4'" sing N N 290 DG "C5'" "H5'" sing N N 291 DG "C5'" "H5''" sing N N 292 DG "C4'" "O4'" sing N N 293 DG "C4'" "C3'" sing N N 294 DG "C4'" "H4'" sing N N 295 DG "O4'" "C1'" sing N N 296 DG "C3'" "O3'" sing N N 297 DG "C3'" "C2'" sing N N 298 DG "C3'" "H3'" sing N N 299 DG "O3'" "HO3'" sing N N 300 DG "C2'" "C1'" sing N N 301 DG "C2'" "H2'" sing N N 302 DG "C2'" "H2''" sing N N 303 DG "C1'" N9 sing N N 304 DG "C1'" "H1'" sing N N 305 DG N9 C8 sing Y N 306 DG N9 C4 sing Y N 307 DG C8 N7 doub Y N 308 DG C8 H8 sing N N 309 DG N7 C5 sing Y N 310 DG C5 C6 sing N N 311 DG C5 C4 doub Y N 312 DG C6 O6 doub N N 313 DG C6 N1 sing N N 314 DG N1 C2 sing N N 315 DG N1 H1 sing N N 316 DG C2 N2 sing N N 317 DG C2 N3 doub N N 318 DG N2 H21 sing N N 319 DG N2 H22 sing N N 320 DG N3 C4 sing N N 321 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 8WU5 'double helix' 8WU5 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DG 9 1_555 A DC 7 1_555 0.033 -0.222 0.347 -4.498 2.316 -2.100 1 B_DG9:DC7_A B 9 ? A 7 ? 19 1 1 B DC 10 1_555 A DG 6 1_555 0.120 -0.127 -0.079 6.537 -3.209 -1.389 2 B_DC10:DG6_A B 10 ? A 6 ? 19 1 1 B DA 11 1_555 A DA 5 1_555 -1.037 1.478 -0.672 -2.292 -18.937 15.491 3 B_DA11:DA5_A B 11 ? A 5 ? ? 1 1 B DC 12 1_555 A DG 4 1_555 -0.610 -0.492 0.111 -0.016 -4.808 -5.248 4 B_DC12:DG4_A B 12 ? A 4 ? 19 1 1 B DG 13 1_555 A CBR 3 1_555 0.351 -0.269 0.533 7.636 -6.718 -6.469 5 B_DG13:CBR3_A B 13 ? A 3 ? 19 1 1 B DG 14 1_555 A DC 2 1_555 -0.208 -0.172 -0.154 3.970 -1.522 2.843 6 B_DG14:DC2_A B 14 ? A 2 ? 19 1 1 B DC 15 1_555 A DG 1 1_555 0.276 -0.083 -0.214 2.629 -2.792 3.995 7 B_DC15:DG1_A B 15 ? A 1 ? 19 1 1 D DG 1 1_555 C DC 15 1_555 -0.054 -0.212 -0.158 -10.764 -3.363 2.097 8 D_DG1:DC15_C D 1 ? C 15 ? 19 1 1 D DC 2 1_555 C DG 14 1_555 0.211 -0.182 -0.217 -0.006 -1.710 3.584 9 D_DC2:DG14_C D 2 ? C 14 ? 19 1 1 D CBR 3 1_555 C DG 13 1_555 -1.490 -0.017 0.761 -2.960 -5.057 -6.938 10 D_CBR3:DG13_C D 3 ? C 13 ? 19 1 1 D DG 4 1_555 C DC 12 1_555 -0.098 -0.292 0.844 1.906 -4.969 1.160 11 D_DG4:DC12_C D 4 ? C 12 ? 19 1 1 D DG 6 1_555 C DC 10 1_555 -0.301 -0.387 0.159 -2.948 -1.495 -1.583 12 D_DG6:DC10_C D 6 ? C 10 ? 19 1 1 D DC 7 1_555 C DG 9 1_555 0.103 -0.068 0.333 4.281 -9.607 -1.130 13 D_DC7:DG9_C D 7 ? C 9 ? 19 1 1 D DG 9 1_555 C DC 7 1_555 0.233 -0.060 0.082 -2.785 -5.137 5.483 14 D_DG9:DC7_C D 9 ? C 7 ? 19 1 1 D DC 10 1_555 C DG 6 1_555 -0.041 -0.055 -0.042 21.833 -10.160 7.328 15 D_DC10:DG6_C D 10 ? C 6 ? 19 1 1 D DA 11 1_555 C DA 5 1_555 -1.243 1.748 -0.683 8.064 -18.516 22.680 16 D_DA11:DA5_C D 11 ? C 5 ? ? 1 1 D DC 12 1_555 C DG 4 1_555 0.237 -0.057 -0.438 2.871 -6.345 -1.040 17 D_DC12:DG4_C D 12 ? C 4 ? 19 1 1 D DG 13 1_555 C CBR 3 1_555 -0.038 -0.259 -0.387 -4.944 -6.876 -6.699 18 D_DG13:CBR3_C D 13 ? C 3 ? 19 1 1 D DG 14 1_555 C DC 2 1_555 -0.159 -0.140 -0.330 -1.219 -1.528 0.661 19 D_DG14:DC2_C D 14 ? C 2 ? 19 1 1 D DC 15 1_555 C DG 1 1_555 0.466 -0.485 0.058 2.400 8.423 -1.328 20 D_DC15:DG1_C D 15 ? C 1 ? 19 1 1 A DG 9 1_555 B DC 7 1_555 0.680 -0.346 0.147 -7.588 0.733 -7.818 21 A_DG9:DC7_B A 9 ? B 7 ? 19 1 1 A DC 10 1_555 B DG 6 1_555 0.234 -0.218 0.973 1.284 4.999 4.231 22 A_DC10:DG6_B A 10 ? B 6 ? 19 1 1 A DC 12 1_555 B DG 4 1_555 0.253 -0.115 0.095 -7.673 -15.822 -0.312 23 A_DC12:DG4_B A 12 ? B 4 ? 19 1 1 A DG 13 1_555 B CBR 3 1_555 0.912 0.193 -1.003 -10.927 -7.451 4.284 24 A_DG13:CBR3_B A 13 ? B 3 ? 19 1 1 A DG 14 1_555 B DC 2 1_555 -0.215 -0.237 -0.498 -10.965 -10.253 -0.353 25 A_DG14:DC2_B A 14 ? B 2 ? 19 1 1 A DC 15 1_555 B DG 1 1_555 0.121 -0.274 0.305 -3.650 -1.895 2.655 26 A_DC15:DG1_B A 15 ? B 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DG 9 1_555 A DC 7 1_555 B DC 10 1_555 A DG 6 1_555 0.087 -0.185 2.885 3.624 -1.359 38.421 -0.131 0.264 2.885 -2.059 -5.490 38.608 1 BB_DG9DC10:DG6DC7_AA B 9 ? A 7 ? B 10 ? A 6 ? 1 B DC 10 1_555 A DG 6 1_555 B DA 11 1_555 A DA 5 1_555 1.598 -0.216 3.238 9.940 6.664 19.089 -3.248 -0.078 3.389 17.985 -26.826 22.500 2 BB_DC10DA11:DA5DG6_AA B 10 ? A 6 ? B 11 ? A 5 ? 1 B DA 11 1_555 A DA 5 1_555 B DC 12 1_555 A DG 4 1_555 0.001 0.067 3.094 -8.251 12.884 33.990 -1.533 -1.050 2.859 20.783 13.309 37.182 3 BB_DA11DC12:DG4DA5_AA B 11 ? A 5 ? B 12 ? A 4 ? 1 B DC 12 1_555 A DG 4 1_555 B DG 13 1_555 A CBR 3 1_555 -0.232 1.877 3.436 3.669 -2.959 43.833 2.788 0.665 3.280 -3.950 -4.897 44.073 4 BB_DC12DG13:CBR3DG4_AA B 12 ? A 4 ? B 13 ? A 3 ? 1 B DG 13 1_555 A CBR 3 1_555 B DG 14 1_555 A DC 2 1_555 -0.278 -0.228 3.633 0.731 6.060 33.344 -1.468 0.607 3.532 10.451 -1.260 33.882 5 BB_DG13DG14:DC2CBR3_AA B 13 ? A 3 ? B 14 ? A 2 ? 1 B DG 14 1_555 A DC 2 1_555 B DC 15 1_555 A DG 1 1_555 0.628 -0.727 3.123 0.241 0.874 35.963 -1.296 -0.983 3.109 1.415 -0.391 35.974 6 BB_DG14DC15:DG1DC2_AA B 14 ? A 2 ? B 15 ? A 1 ? 1 B DC 15 1_555 A DG 1 1_555 D DG 1 1_555 C DC 15 1_555 -0.068 0.788 3.785 -0.281 3.100 -37.149 -1.704 -0.150 3.709 -4.855 -0.440 -37.275 7 BD_DC15DG1:DC15DG1_CA B 15 ? A 1 ? D 1 ? C 15 ? 1 D DG 1 1_555 C DC 15 1_555 D DC 2 1_555 C DG 14 1_555 -0.138 -0.860 2.934 1.462 0.439 40.318 -1.290 0.348 2.918 0.636 -2.120 40.345 8 DD_DG1DC2:DG14DC15_CC D 1 ? C 15 ? D 2 ? C 14 ? 1 D DC 2 1_555 C DG 14 1_555 D CBR 3 1_555 C DG 13 1_555 -0.073 -0.507 3.336 -2.375 4.115 26.737 -2.128 -0.449 3.217 8.811 5.086 27.148 9 DD_DC2CBR3:DG13DG14_CC D 2 ? C 14 ? D 3 ? C 13 ? 1 D CBR 3 1_555 C DG 13 1_555 D DG 4 1_555 C DC 12 1_555 1.210 1.008 3.563 2.021 -2.827 42.779 1.683 -1.435 3.543 -3.868 -2.765 42.913 10 DD_CBR3DG4:DC12DG13_CC D 3 ? C 13 ? D 4 ? C 12 ? 1 D DG 4 1_555 C DC 12 1_555 D DG 6 1_555 C DC 10 1_555 -1.047 -0.169 6.583 -1.035 15.669 65.068 -1.402 0.869 6.416 14.350 0.948 66.733 11 DD_DG4DG6:DC10DC12_CC D 4 ? C 12 ? D 6 ? C 10 ? 1 D DG 6 1_555 C DC 10 1_555 D DC 7 1_555 C DG 9 1_555 -0.087 -0.156 3.008 1.921 -6.606 37.740 0.526 0.354 2.985 -10.109 -2.940 38.339 12 DD_DG6DC7:DG9DC10_CC D 6 ? C 10 ? D 7 ? C 9 ? 1 D DC 7 1_555 C DG 9 1_555 D DG 9 1_555 C DC 7 1_555 0.914 0.729 7.047 2.982 23.041 62.656 -1.377 -0.570 6.954 21.394 -2.769 66.411 13 DD_DC7DG9:DC7DG9_CC D 7 ? C 9 ? D 9 ? C 7 ? 1 D DG 9 1_555 C DC 7 1_555 D DC 10 1_555 C DG 6 1_555 -0.082 -0.265 2.456 -0.644 7.780 33.201 -1.370 0.064 2.337 13.385 1.107 34.081 14 DD_DG9DC10:DG6DC7_CC D 9 ? C 7 ? D 10 ? C 6 ? 1 D DC 10 1_555 C DG 6 1_555 D DA 11 1_555 C DA 5 1_555 0.764 0.639 3.640 10.726 3.203 28.588 0.472 1.022 3.726 6.194 -20.744 30.659 15 DD_DC10DA11:DA5DG6_CC D 10 ? C 6 ? D 11 ? C 5 ? 1 D DA 11 1_555 C DA 5 1_555 D DC 12 1_555 C DG 4 1_555 -0.886 0.467 3.531 -4.674 15.514 37.619 -1.256 0.689 3.532 22.808 6.871 40.844 16 DD_DA11DC12:DG4DA5_CC D 11 ? C 5 ? D 12 ? C 4 ? 1 D DC 12 1_555 C DG 4 1_555 D DG 13 1_555 C CBR 3 1_555 -0.205 1.795 3.686 0.588 -0.522 39.897 2.698 0.377 3.660 -0.765 -0.862 39.905 17 DD_DC12DG13:CBR3DG4_CC D 12 ? C 4 ? D 13 ? C 3 ? 1 D DG 13 1_555 C CBR 3 1_555 D DG 14 1_555 C DC 2 1_555 -0.585 -0.310 3.256 -4.312 5.886 32.173 -1.547 0.298 3.200 10.453 7.659 32.969 18 DD_DG13DG14:DC2CBR3_CC D 13 ? C 3 ? D 14 ? C 2 ? 1 D DG 14 1_555 C DC 2 1_555 D DC 15 1_555 C DG 1 1_555 0.293 -0.582 3.189 -2.039 0.750 33.650 -1.121 -0.827 3.153 1.293 3.518 33.718 19 DD_DG14DC15:DG1DC2_CC D 14 ? C 2 ? D 15 ? C 1 ? 1 A DG 9 1_555 B DC 7 1_555 A DC 10 1_555 B DG 6 1_555 1.025 -0.516 3.038 -7.455 0.687 31.460 -1.036 -3.019 2.718 1.245 13.511 32.316 20 AA_DG9DC10:DG6DC7_BB A 9 ? B 7 ? A 10 ? B 6 ? 1 A DC 10 1_555 B DG 6 1_555 A DC 12 1_555 B DG 4 1_555 0.713 -0.392 6.491 10.201 15.176 68.400 -1.403 0.097 6.337 13.261 -8.914 70.513 21 AA_DC10DC12:DG4DG6_BB A 10 ? B 6 ? A 12 ? B 4 ? 1 A DC 12 1_555 B DG 4 1_555 A DG 13 1_555 B CBR 3 1_555 -0.512 1.446 3.728 7.981 7.397 36.881 1.121 1.941 3.752 11.392 -12.290 38.399 22 AA_DC12DG13:CBR3DG4_BB A 12 ? B 4 ? A 13 ? B 3 ? 1 A DG 13 1_555 B CBR 3 1_555 A DG 14 1_555 B DC 2 1_555 0.012 0.026 3.160 -7.384 3.335 28.366 -0.637 -1.548 3.043 6.636 14.693 29.477 23 AA_DG13DG14:DC2CBR3_BB A 13 ? B 3 ? A 14 ? B 2 ? 1 A DG 14 1_555 B DC 2 1_555 A DC 15 1_555 B DG 1 1_555 0.315 -0.166 3.029 -1.967 4.163 37.692 -0.744 -0.715 2.975 6.414 3.031 37.962 24 AA_DG14DC15:DG1DC2_BB A 14 ? B 2 ? A 15 ? B 1 ? # _pdbx_audit_support.funding_organization 'Japan Society for the Promotion of Science (JSPS)' _pdbx_audit_support.country Japan _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _space_group.name_H-M_alt 'P 21 21 21' _space_group.name_Hall 'P 2ac 2ab' _space_group.IT_number 19 _space_group.crystal_system orthorhombic _space_group.id 1 # _atom_sites.entry_id 8WU5 _atom_sites.fract_transf_matrix[1][1] 0.036784 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022701 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005145 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol _atom_type.scat_dispersion_real _atom_type.scat_dispersion_imag _atom_type.scat_Cromer_Mann_a1 _atom_type.scat_Cromer_Mann_a2 _atom_type.scat_Cromer_Mann_a3 _atom_type.scat_Cromer_Mann_a4 _atom_type.scat_Cromer_Mann_b1 _atom_type.scat_Cromer_Mann_b2 _atom_type.scat_Cromer_Mann_b3 _atom_type.scat_Cromer_Mann_b4 _atom_type.scat_Cromer_Mann_c _atom_type.scat_source _atom_type.scat_dispersion_source BR ? ? 25.79822 9.11301 ? ? 1.35700 25.34896 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? C ? ? 3.54356 2.42580 ? ? 25.62398 1.50364 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? N ? ? 4.01032 2.96436 ? ? 19.97189 1.75589 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? O ? ? 7.96527 ? ? ? 9.05267 ? ? ? 0.0 ;1-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? P ? ? 9.51135 5.44231 ? ? 1.42069 35.72801 ? ? 0.0 ;2-Gaussian fit: Grosse-Kunstleve RW, Sauter NK, Adams PD: Newsletter of the IUCr Commission on Crystallographic Computing 2004, 3, 22-31. ; ? # loop_