HEADER OXIDOREDUCTASE 25-OCT-23 8WWF TITLE CRYSTAL STRUCTURE OF (R)-DHPS DEHYDROGENASE HPSO FROM RUEGERIA TITLE 2 POMEROYI DSS-3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: (R)-DHPS DEHYDROGENASE HPSO; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RUEGERIA POMEROYI DSS-3; SOURCE 3 ORGANISM_TAXID: 246200; SOURCE 4 GENE: HPSO; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS NAD-DEPENDENT, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR L.LIU,K.TANG REVDAT 2 11-SEP-24 8WWF 1 JRNL REVDAT 1 04-SEP-24 8WWF 0 JRNL AUTH L.LIU,X.GAO,C.DONG,H.WANG,X.CHEN,X.MA,S.LIU,Q.CHEN,D.LIN, JRNL AUTH 2 N.JIAO,K.TANG JRNL TITL ENANTIOSELECTIVE TRANSFORMATION OF PHYTOPLANKTON-DERIVED JRNL TITL 2 DIHYDROXYPROPANESULFONATE BY MARINE BACTERIA. JRNL REF ISME J V. 18 2024 JRNL REFN ESSN 1751-7370 JRNL PMID 38709871 JRNL DOI 10.1093/ISMEJO/WRAE084 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 3 NUMBER OF REFLECTIONS : 88739 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4672 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.75 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6336 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.14 REMARK 3 BIN R VALUE (WORKING SET) : 0.1930 REMARK 3 BIN FREE R VALUE SET COUNT : 340 REMARK 3 BIN FREE R VALUE : 0.2630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7363 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 1120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.04000 REMARK 3 B12 (A**2) : 0.09000 REMARK 3 B13 (A**2) : 0.06000 REMARK 3 B23 (A**2) : 0.02000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.109 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.105 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.062 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.809 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7523 ; 0.022 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 7086 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10244 ; 2.124 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): 16192 ; 1.059 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 996 ; 6.562 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 321 ;33.175 ;22.897 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1073 ;14.314 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 68 ;18.087 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1132 ; 0.176 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8852 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1788 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3996 ; 1.800 ; 1.622 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3995 ; 1.800 ; 1.622 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4988 ; 2.499 ; 2.430 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4989 ; 2.498 ; 2.430 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3527 ; 3.029 ; 1.973 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3528 ; 3.029 ; 1.973 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 5257 ; 4.447 ; 2.836 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 9681 ; 6.492 ;15.735 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 8913 ; 6.133 ;14.560 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8WWF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-OCT-23. REMARK 100 THE DEPOSITION ID IS D_1300041896. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 93413 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 41.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.13900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.35600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8 M SODIUM FORMATE, 0.1 M SODIUM REMARK 280 CITRATE, PH 5.4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -84.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 3 REMARK 465 SER A 4 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ASP B 3 REMARK 465 SER B 4 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 ASP C 3 REMARK 465 SER C 4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O MET D 1 O HOH D 301 0.80 REMARK 500 CA ALA D 2 O HOH D 302 0.93 REMARK 500 N ALA D 2 O HOH D 302 1.06 REMARK 500 C MET D 1 O HOH D 301 1.45 REMARK 500 OE1 GLU B 222 O HOH B 301 1.63 REMARK 500 CB ALA D 2 O HOH D 302 1.84 REMARK 500 OE1 GLU A 222 O HOH A 301 1.88 REMARK 500 O HOH C 398 O HOH C 499 1.93 REMARK 500 O HOH B 460 O HOH B 492 1.94 REMARK 500 OE2 GLU B 194 O HOH B 302 1.95 REMARK 500 O HOH B 445 O HOH B 516 1.98 REMARK 500 O HOH A 398 O HOH A 428 2.00 REMARK 500 O HOH A 393 O HOH B 394 2.01 REMARK 500 O HOH A 328 O HOH A 492 2.01 REMARK 500 O HOH C 382 O HOH C 517 2.02 REMARK 500 O HOH C 525 O HOH C 568 2.02 REMARK 500 O HOH B 481 O HOH B 518 2.04 REMARK 500 OE1 GLU B 74 O HOH B 303 2.04 REMARK 500 O HOH D 341 O HOH D 524 2.05 REMARK 500 O HOH C 531 O HOH C 573 2.05 REMARK 500 O HOH C 373 O HOH C 394 2.07 REMARK 500 NH2 ARG B 192 O HOH B 304 2.08 REMARK 500 O HOH C 302 O HOH C 394 2.09 REMARK 500 O HOH A 408 O HOH A 474 2.10 REMARK 500 O HOH A 398 O HOH A 511 2.10 REMARK 500 O HOH C 302 O HOH C 315 2.10 REMARK 500 O HOH A 475 O HOH A 496 2.10 REMARK 500 O HOH B 460 O HOH B 562 2.10 REMARK 500 NH2 ARG D 13 O HOH D 303 2.11 REMARK 500 O PRO A 198 O HOH A 302 2.11 REMARK 500 NH1 ARG C 99 O LEU C 195 2.12 REMARK 500 O HOH A 446 O HOH A 563 2.12 REMARK 500 O HOH D 500 O HOH D 528 2.13 REMARK 500 O HOH C 404 O HOH D 422 2.13 REMARK 500 O TYR C 6 N PHE C 8 2.13 REMARK 500 C MET D 1 O HOH D 302 2.14 REMARK 500 O HOH C 502 O HOH C 507 2.14 REMARK 500 O HOH B 306 O HOH B 512 2.15 REMARK 500 O HOH A 448 O HOH A 500 2.15 REMARK 500 O HOH B 537 O HOH B 567 2.16 REMARK 500 O HOH C 303 O HOH C 494 2.17 REMARK 500 OD2 ASP B 47 O HOH B 305 2.18 REMARK 500 O HOH D 482 O HOH D 511 2.18 REMARK 500 O HOH C 496 O HOH D 531 2.19 REMARK 500 O HOH B 495 O HOH B 518 2.19 REMARK 500 O HOH D 349 O HOH D 526 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 476 O HOH B 533 1565 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 170 CZ ARG A 170 NH1 0.113 REMARK 500 ARG A 170 CZ ARG A 170 NH2 -0.102 REMARK 500 ARG B 170 CZ ARG B 170 NH2 -0.083 REMARK 500 ARG C 170 CZ ARG C 170 NH1 0.101 REMARK 500 ARG C 170 CZ ARG C 170 NH2 -0.090 REMARK 500 GLU D 108 CD GLU D 108 OE1 -0.067 REMARK 500 ARG D 170 CZ ARG D 170 NH1 0.095 REMARK 500 ARG D 170 CZ ARG D 170 NH2 -0.107 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 99 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 150 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG A 170 CD - NE - CZ ANGL. DEV. = 9.8 DEGREES REMARK 500 ARG A 170 NE - CZ - NH1 ANGL. DEV. = 14.8 DEGREES REMARK 500 ARG A 170 NE - CZ - NH2 ANGL. DEV. = -16.9 DEGREES REMARK 500 ARG A 208 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 208 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG B 26 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ASP B 103 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG B 170 CD - NE - CZ ANGL. DEV. = 9.8 DEGREES REMARK 500 ARG B 170 NE - CZ - NH1 ANGL. DEV. = 14.3 DEGREES REMARK 500 ARG B 170 NE - CZ - NH2 ANGL. DEV. = -16.7 DEGREES REMARK 500 ARG C 44 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG C 170 CD - NE - CZ ANGL. DEV. = 11.6 DEGREES REMARK 500 ARG C 170 NE - CZ - NH1 ANGL. DEV. = 15.4 DEGREES REMARK 500 ARG C 170 NE - CZ - NH2 ANGL. DEV. = -16.7 DEGREES REMARK 500 LEU D 118 CB - CG - CD2 ANGL. DEV. = 11.9 DEGREES REMARK 500 ARG D 150 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG D 170 CD - NE - CZ ANGL. DEV. = 11.9 DEGREES REMARK 500 ARG D 170 NE - CZ - NH1 ANGL. DEV. = 15.7 DEGREES REMARK 500 ARG D 170 NE - CZ - NH2 ANGL. DEV. = -17.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 118 -54.77 -130.85 REMARK 500 ALA A 197 -50.91 -27.91 REMARK 500 LEU B 118 -53.35 -134.55 REMARK 500 LEU C 7 -28.45 27.20 REMARK 500 LEU C 118 -54.09 -129.41 REMARK 500 ARG C 192 98.50 -68.53 REMARK 500 LEU D 118 -54.23 -129.87 REMARK 500 ARG D 192 97.74 -67.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 569 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH A 570 DISTANCE = 6.44 ANGSTROMS REMARK 525 HOH C 579 DISTANCE = 6.30 ANGSTROMS REMARK 525 HOH C 580 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH C 581 DISTANCE = 6.58 ANGSTROMS REMARK 525 HOH C 582 DISTANCE = 7.09 ANGSTROMS REMARK 525 HOH C 583 DISTANCE = 7.10 ANGSTROMS DBREF 8WWF A 1 253 UNP Q5LVV0 Q5LVV0_RUEPO 1 253 DBREF 8WWF B 1 253 UNP Q5LVV0 Q5LVV0_RUEPO 1 253 DBREF 8WWF C 1 253 UNP Q5LVV0 Q5LVV0_RUEPO 1 253 DBREF 8WWF D 1 253 UNP Q5LVV0 Q5LVV0_RUEPO 1 253 SEQRES 1 A 253 MET ALA ASP SER GLY TYR LEU PHE SER VAL ARG GLY ARG SEQRES 2 A 253 VAL ALA CYS VAL THR GLY ALA SER SER GLY LEU GLY ARG SEQRES 3 A 253 ARG ALA ALA THR VAL LEU ALA GLN ALA GLY ALA GLN VAL SEQRES 4 A 253 VAL GLY VAL ALA ARG ARG ALA ASP ALA LEU ALA GLU TRP SEQRES 5 A 253 GLN ALA GLU ALA GLY GLY GLU THR HIS ALA ILE PRO TYR SEQRES 6 A 253 ASP LEU SER ASP ARG ASP GLY LEU GLU GLY LEU ALA ARG SEQRES 7 A 253 GLN VAL VAL ASP PRO PHE GLY ALA PRO ASP ILE LEU VAL SEQRES 8 A 253 HIS ALA ALA GLY ILE ASN THR ARG GLN PRO ALA ASP GLU SEQRES 9 A 253 VAL THR PRO GLU GLY TRP ASP ILE THR LEU THR LEU ASN SEQRES 10 A 253 LEU SER VAL PRO PHE PHE LEU SER GLN TYR LEU VAL PRO SEQRES 11 A 253 GLY MET LYS ALA ARG GLY TRP GLY ARG ILE VAL ASN PHE SEQRES 12 A 253 ALA SER LEU GLN THR THR ARG ALA PHE PRO GLY GLY ILE SEQRES 13 A 253 ALA TYR GLY ALA SER LYS GLY GLY VAL ALA GLN MET THR SEQRES 14 A 253 ARG ALA MET ALA GLU ALA TRP SER PRO HIS GLY ILE THR SEQRES 15 A 253 ALA ASN ALA LEU GLY PRO GLY PHE PHE ARG THR GLU LEU SEQRES 16 A 253 THR ALA PRO VAL PHE ALA ASP PRO GLU ARG ALA ALA ARG SEQRES 17 A 253 ASN ALA ALA GLN THR CYS ILE GLY ARG ASN GLY GLU PRO SEQRES 18 A 253 GLU ASP LEU ASP GLY PRO LEU LEU PHE LEU CYS SER GLN SEQRES 19 A 253 ALA SER ALA TYR VAL THR GLY GLN VAL LEU MET VAL ASP SEQRES 20 A 253 GLY GLY TYR THR ALA LYS SEQRES 1 B 253 MET ALA ASP SER GLY TYR LEU PHE SER VAL ARG GLY ARG SEQRES 2 B 253 VAL ALA CYS VAL THR GLY ALA SER SER GLY LEU GLY ARG SEQRES 3 B 253 ARG ALA ALA THR VAL LEU ALA GLN ALA GLY ALA GLN VAL SEQRES 4 B 253 VAL GLY VAL ALA ARG ARG ALA ASP ALA LEU ALA GLU TRP SEQRES 5 B 253 GLN ALA GLU ALA GLY GLY GLU THR HIS ALA ILE PRO TYR SEQRES 6 B 253 ASP LEU SER ASP ARG ASP GLY LEU GLU GLY LEU ALA ARG SEQRES 7 B 253 GLN VAL VAL ASP PRO PHE GLY ALA PRO ASP ILE LEU VAL SEQRES 8 B 253 HIS ALA ALA GLY ILE ASN THR ARG GLN PRO ALA ASP GLU SEQRES 9 B 253 VAL THR PRO GLU GLY TRP ASP ILE THR LEU THR LEU ASN SEQRES 10 B 253 LEU SER VAL PRO PHE PHE LEU SER GLN TYR LEU VAL PRO SEQRES 11 B 253 GLY MET LYS ALA ARG GLY TRP GLY ARG ILE VAL ASN PHE SEQRES 12 B 253 ALA SER LEU GLN THR THR ARG ALA PHE PRO GLY GLY ILE SEQRES 13 B 253 ALA TYR GLY ALA SER LYS GLY GLY VAL ALA GLN MET THR SEQRES 14 B 253 ARG ALA MET ALA GLU ALA TRP SER PRO HIS GLY ILE THR SEQRES 15 B 253 ALA ASN ALA LEU GLY PRO GLY PHE PHE ARG THR GLU LEU SEQRES 16 B 253 THR ALA PRO VAL PHE ALA ASP PRO GLU ARG ALA ALA ARG SEQRES 17 B 253 ASN ALA ALA GLN THR CYS ILE GLY ARG ASN GLY GLU PRO SEQRES 18 B 253 GLU ASP LEU ASP GLY PRO LEU LEU PHE LEU CYS SER GLN SEQRES 19 B 253 ALA SER ALA TYR VAL THR GLY GLN VAL LEU MET VAL ASP SEQRES 20 B 253 GLY GLY TYR THR ALA LYS SEQRES 1 C 253 MET ALA ASP SER GLY TYR LEU PHE SER VAL ARG GLY ARG SEQRES 2 C 253 VAL ALA CYS VAL THR GLY ALA SER SER GLY LEU GLY ARG SEQRES 3 C 253 ARG ALA ALA THR VAL LEU ALA GLN ALA GLY ALA GLN VAL SEQRES 4 C 253 VAL GLY VAL ALA ARG ARG ALA ASP ALA LEU ALA GLU TRP SEQRES 5 C 253 GLN ALA GLU ALA GLY GLY GLU THR HIS ALA ILE PRO TYR SEQRES 6 C 253 ASP LEU SER ASP ARG ASP GLY LEU GLU GLY LEU ALA ARG SEQRES 7 C 253 GLN VAL VAL ASP PRO PHE GLY ALA PRO ASP ILE LEU VAL SEQRES 8 C 253 HIS ALA ALA GLY ILE ASN THR ARG GLN PRO ALA ASP GLU SEQRES 9 C 253 VAL THR PRO GLU GLY TRP ASP ILE THR LEU THR LEU ASN SEQRES 10 C 253 LEU SER VAL PRO PHE PHE LEU SER GLN TYR LEU VAL PRO SEQRES 11 C 253 GLY MET LYS ALA ARG GLY TRP GLY ARG ILE VAL ASN PHE SEQRES 12 C 253 ALA SER LEU GLN THR THR ARG ALA PHE PRO GLY GLY ILE SEQRES 13 C 253 ALA TYR GLY ALA SER LYS GLY GLY VAL ALA GLN MET THR SEQRES 14 C 253 ARG ALA MET ALA GLU ALA TRP SER PRO HIS GLY ILE THR SEQRES 15 C 253 ALA ASN ALA LEU GLY PRO GLY PHE PHE ARG THR GLU LEU SEQRES 16 C 253 THR ALA PRO VAL PHE ALA ASP PRO GLU ARG ALA ALA ARG SEQRES 17 C 253 ASN ALA ALA GLN THR CYS ILE GLY ARG ASN GLY GLU PRO SEQRES 18 C 253 GLU ASP LEU ASP GLY PRO LEU LEU PHE LEU CYS SER GLN SEQRES 19 C 253 ALA SER ALA TYR VAL THR GLY GLN VAL LEU MET VAL ASP SEQRES 20 C 253 GLY GLY TYR THR ALA LYS SEQRES 1 D 253 MET ALA ASP SER GLY TYR LEU PHE SER VAL ARG GLY ARG SEQRES 2 D 253 VAL ALA CYS VAL THR GLY ALA SER SER GLY LEU GLY ARG SEQRES 3 D 253 ARG ALA ALA THR VAL LEU ALA GLN ALA GLY ALA GLN VAL SEQRES 4 D 253 VAL GLY VAL ALA ARG ARG ALA ASP ALA LEU ALA GLU TRP SEQRES 5 D 253 GLN ALA GLU ALA GLY GLY GLU THR HIS ALA ILE PRO TYR SEQRES 6 D 253 ASP LEU SER ASP ARG ASP GLY LEU GLU GLY LEU ALA ARG SEQRES 7 D 253 GLN VAL VAL ASP PRO PHE GLY ALA PRO ASP ILE LEU VAL SEQRES 8 D 253 HIS ALA ALA GLY ILE ASN THR ARG GLN PRO ALA ASP GLU SEQRES 9 D 253 VAL THR PRO GLU GLY TRP ASP ILE THR LEU THR LEU ASN SEQRES 10 D 253 LEU SER VAL PRO PHE PHE LEU SER GLN TYR LEU VAL PRO SEQRES 11 D 253 GLY MET LYS ALA ARG GLY TRP GLY ARG ILE VAL ASN PHE SEQRES 12 D 253 ALA SER LEU GLN THR THR ARG ALA PHE PRO GLY GLY ILE SEQRES 13 D 253 ALA TYR GLY ALA SER LYS GLY GLY VAL ALA GLN MET THR SEQRES 14 D 253 ARG ALA MET ALA GLU ALA TRP SER PRO HIS GLY ILE THR SEQRES 15 D 253 ALA ASN ALA LEU GLY PRO GLY PHE PHE ARG THR GLU LEU SEQRES 16 D 253 THR ALA PRO VAL PHE ALA ASP PRO GLU ARG ALA ALA ARG SEQRES 17 D 253 ASN ALA ALA GLN THR CYS ILE GLY ARG ASN GLY GLU PRO SEQRES 18 D 253 GLU ASP LEU ASP GLY PRO LEU LEU PHE LEU CYS SER GLN SEQRES 19 D 253 ALA SER ALA TYR VAL THR GLY GLN VAL LEU MET VAL ASP SEQRES 20 D 253 GLY GLY TYR THR ALA LYS FORMUL 5 HOH *1120(H2 O) HELIX 1 AA1 GLY A 5 SER A 9 5 5 HELIX 2 AA2 SER A 22 ALA A 35 1 14 HELIX 3 AA3 ARG A 45 GLY A 57 1 13 HELIX 4 AA4 GLY A 72 ASP A 82 1 11 HELIX 5 AA5 PRO A 101 VAL A 105 5 5 HELIX 6 AA6 THR A 106 LEU A 118 1 13 HELIX 7 AA7 LEU A 118 GLY A 136 1 19 HELIX 8 AA8 SER A 145 THR A 149 5 5 HELIX 9 AA9 GLY A 155 SER A 177 1 23 HELIX 10 AB1 THR A 196 ASP A 202 1 7 HELIX 11 AB2 ASP A 202 THR A 213 1 12 HELIX 12 AB3 GLU A 220 ASP A 223 5 4 HELIX 13 AB4 LEU A 224 CYS A 232 1 9 HELIX 14 AB5 SER A 233 ALA A 237 5 5 HELIX 15 AB6 GLY A 249 LYS A 253 5 5 HELIX 16 AB7 GLY B 5 SER B 9 5 5 HELIX 17 AB8 SER B 22 ALA B 35 1 14 HELIX 18 AB9 ARG B 45 GLY B 57 1 13 HELIX 19 AC1 GLY B 72 ASP B 82 1 11 HELIX 20 AC2 PRO B 101 VAL B 105 5 5 HELIX 21 AC3 THR B 106 LEU B 118 1 13 HELIX 22 AC4 LEU B 118 GLY B 136 1 19 HELIX 23 AC5 SER B 145 THR B 149 5 5 HELIX 24 AC6 GLY B 155 SER B 177 1 23 HELIX 25 AC7 THR B 193 LEU B 195 5 3 HELIX 26 AC8 THR B 196 ASP B 202 1 7 HELIX 27 AC9 ASP B 202 THR B 213 1 12 HELIX 28 AD1 GLU B 220 ASP B 223 5 4 HELIX 29 AD2 LEU B 224 CYS B 232 1 9 HELIX 30 AD3 SER B 233 ALA B 237 5 5 HELIX 31 AD4 GLY B 249 LYS B 253 5 5 HELIX 32 AD5 SER C 22 ALA C 35 1 14 HELIX 33 AD6 ARG C 45 GLY C 57 1 13 HELIX 34 AD7 GLY C 72 ASP C 82 1 11 HELIX 35 AD8 PRO C 101 VAL C 105 5 5 HELIX 36 AD9 THR C 106 LEU C 118 1 13 HELIX 37 AE1 LEU C 118 GLY C 136 1 19 HELIX 38 AE2 SER C 145 THR C 149 5 5 HELIX 39 AE3 GLY C 155 SER C 177 1 23 HELIX 40 AE4 THR C 193 LEU C 195 5 3 HELIX 41 AE5 THR C 196 ASP C 202 1 7 HELIX 42 AE6 ASP C 202 THR C 213 1 12 HELIX 43 AE7 GLU C 220 ASP C 223 5 4 HELIX 44 AE8 LEU C 224 CYS C 232 1 9 HELIX 45 AE9 SER C 233 ALA C 237 5 5 HELIX 46 AF1 GLY C 249 LYS C 253 5 5 HELIX 47 AF2 ALA D 2 SER D 9 5 8 HELIX 48 AF3 SER D 22 ALA D 35 1 14 HELIX 49 AF4 ARG D 45 GLY D 57 1 13 HELIX 50 AF5 GLY D 72 ASP D 82 1 11 HELIX 51 AF6 PRO D 101 VAL D 105 5 5 HELIX 52 AF7 THR D 106 LEU D 118 1 13 HELIX 53 AF8 LEU D 118 GLY D 136 1 19 HELIX 54 AF9 SER D 145 THR D 149 5 5 HELIX 55 AG1 GLY D 155 SER D 177 1 23 HELIX 56 AG2 THR D 193 LEU D 195 5 3 HELIX 57 AG3 THR D 196 ASP D 202 1 7 HELIX 58 AG4 ASP D 202 THR D 213 1 12 HELIX 59 AG5 GLU D 220 ASP D 223 5 4 HELIX 60 AG6 LEU D 224 CYS D 232 1 9 HELIX 61 AG7 SER D 233 ALA D 237 5 5 HELIX 62 AG8 GLY D 249 LYS D 253 5 5 SHEET 1 AA1 7 THR A 60 PRO A 64 0 SHEET 2 AA1 7 GLN A 38 ALA A 43 1 N GLY A 41 O HIS A 61 SHEET 3 AA1 7 VAL A 14 THR A 18 1 N ALA A 15 O VAL A 40 SHEET 4 AA1 7 ILE A 89 HIS A 92 1 O VAL A 91 N CYS A 16 SHEET 5 AA1 7 GLY A 138 PHE A 143 1 O ARG A 139 N LEU A 90 SHEET 6 AA1 7 ILE A 181 PRO A 188 1 O ASN A 184 N ASN A 142 SHEET 7 AA1 7 VAL A 243 VAL A 246 1 O LEU A 244 N GLY A 187 SHEET 1 AA2 7 THR B 60 PRO B 64 0 SHEET 2 AA2 7 GLN B 38 ALA B 43 1 N GLY B 41 O HIS B 61 SHEET 3 AA2 7 VAL B 14 THR B 18 1 N ALA B 15 O VAL B 40 SHEET 4 AA2 7 ILE B 89 HIS B 92 1 O VAL B 91 N CYS B 16 SHEET 5 AA2 7 GLY B 138 PHE B 143 1 O VAL B 141 N LEU B 90 SHEET 6 AA2 7 ILE B 181 PRO B 188 1 O ASN B 184 N ASN B 142 SHEET 7 AA2 7 VAL B 243 VAL B 246 1 O LEU B 244 N GLY B 187 SHEET 1 AA3 7 THR C 60 PRO C 64 0 SHEET 2 AA3 7 GLN C 38 ALA C 43 1 N GLY C 41 O HIS C 61 SHEET 3 AA3 7 VAL C 14 THR C 18 1 N ALA C 15 O VAL C 40 SHEET 4 AA3 7 ILE C 89 HIS C 92 1 O VAL C 91 N CYS C 16 SHEET 5 AA3 7 GLY C 138 PHE C 143 1 O ARG C 139 N LEU C 90 SHEET 6 AA3 7 ILE C 181 PRO C 188 1 O ASN C 184 N ASN C 142 SHEET 7 AA3 7 VAL C 243 VAL C 246 1 O VAL C 246 N GLY C 187 SHEET 1 AA4 7 THR D 60 PRO D 64 0 SHEET 2 AA4 7 GLN D 38 ALA D 43 1 N GLY D 41 O HIS D 61 SHEET 3 AA4 7 VAL D 14 THR D 18 1 N ALA D 15 O VAL D 40 SHEET 4 AA4 7 ILE D 89 HIS D 92 1 O VAL D 91 N CYS D 16 SHEET 5 AA4 7 GLY D 138 PHE D 143 1 O ARG D 139 N LEU D 90 SHEET 6 AA4 7 ILE D 181 PRO D 188 1 O ASN D 184 N ASN D 142 SHEET 7 AA4 7 VAL D 243 VAL D 246 1 O LEU D 244 N GLY D 187 CRYST1 56.140 56.156 76.185 96.27 105.96 90.70 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017813 0.000217 0.005155 0.00000 SCALE2 0.000000 0.017809 0.002099 0.00000 SCALE3 0.000000 0.000000 0.013747 0.00000