HEADER NUCLEAR PROTEIN 30-OCT-23 8WXV TITLE STRUCTURE OF WDR5 IN COMPLEX WITH WIN MOTIF CONTAINING SET1B COMPND MOL_ID: 1; COMPND 2 MOLECULE: WD REPEAT-CONTAINING PROTEIN 5; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: BMP2-INDUCED 3-KB GENE PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: SET1B; COMPND 8 CHAIN: B, D; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: WDR5, BIG3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS WDR5, SET1B, WIN MOTIF, CHROMATIN, NUCLEAR PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.XU,Y.YANG REVDAT 1 26-JUN-24 8WXV 0 JRNL AUTH Y.YANG,L.XU,S.ZHANG,L.YAO,Y.DING,W.LI,X.CHEN JRNL TITL STRUCTURAL STUDIES OF WDR5 IN COMPLEX WITH MBD3C WIN MOTIF JRNL TITL 2 REVEAL A UNIQUE BINDING MODE. JRNL REF J.BIOL.CHEM. 07468 2024 JRNL REFN ESSN 1083-351X JRNL PMID 38876301 JRNL DOI 10.1016/J.JBC.2024.107468 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.19.2_4158: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.010 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 23652 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.170 REMARK 3 FREE R VALUE TEST SET COUNT : 2406 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.5400 - 6.1600 0.99 1255 146 0.1684 0.1562 REMARK 3 2 6.1500 - 4.8900 0.98 1246 171 0.1499 0.1652 REMARK 3 3 4.8900 - 4.2700 0.99 1245 146 0.1233 0.1401 REMARK 3 4 4.2700 - 3.8800 0.99 1296 121 0.1337 0.1761 REMARK 3 5 3.8800 - 3.6100 0.99 1257 115 0.1748 0.2423 REMARK 3 6 3.6100 - 3.3900 0.98 1266 163 0.1668 0.1889 REMARK 3 7 3.3900 - 3.2200 0.99 1278 124 0.1746 0.2214 REMARK 3 8 3.2200 - 3.0800 0.98 1252 134 0.1747 0.2345 REMARK 3 9 3.0800 - 2.9600 0.98 1248 151 0.1845 0.2192 REMARK 3 10 2.9600 - 2.8600 0.98 1280 140 0.1818 0.2540 REMARK 3 11 2.8600 - 2.7700 0.97 1208 141 0.1764 0.2381 REMARK 3 12 2.7700 - 2.6900 0.97 1258 139 0.1827 0.2174 REMARK 3 13 2.6900 - 2.6200 0.97 1257 139 0.1884 0.2349 REMARK 3 14 2.6200 - 2.5600 0.98 1223 142 0.1977 0.2806 REMARK 3 15 2.5600 - 2.5000 0.97 1255 157 0.2093 0.2866 REMARK 3 16 2.5000 - 2.4500 0.97 1195 136 0.2032 0.2862 REMARK 3 17 2.4500 - 2.4000 0.94 1227 141 0.2175 0.2626 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 1.00 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.000 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 4834 REMARK 3 ANGLE : 0.815 6557 REMARK 3 CHIRALITY : 0.057 743 REMARK 3 PLANARITY : 0.005 812 REMARK 3 DIHEDRAL : 6.860 638 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 32 THROUGH 334) REMARK 3 ORIGIN FOR THE GROUP (A): -14.7171 21.4737 15.2587 REMARK 3 T TENSOR REMARK 3 T11: 0.1636 T22: 0.2226 REMARK 3 T33: 0.1579 T12: 0.0025 REMARK 3 T13: 0.0226 T23: 0.0252 REMARK 3 L TENSOR REMARK 3 L11: 2.1037 L22: 2.8865 REMARK 3 L33: 2.3611 L12: -0.7181 REMARK 3 L13: 1.0146 L23: -0.3503 REMARK 3 S TENSOR REMARK 3 S11: -0.1308 S12: -0.2624 S13: 0.0695 REMARK 3 S21: 0.1081 S22: 0.0465 S23: -0.1486 REMARK 3 S31: -0.2811 S32: -0.0438 S33: 0.0786 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 1745 THROUGH 1752) REMARK 3 ORIGIN FOR THE GROUP (A): -19.6884 15.0743 27.0780 REMARK 3 T TENSOR REMARK 3 T11: 0.8493 T22: 1.0847 REMARK 3 T33: 0.4864 T12: -0.0635 REMARK 3 T13: -0.2309 T23: 0.2028 REMARK 3 L TENSOR REMARK 3 L11: 6.5405 L22: 6.5900 REMARK 3 L33: 0.5015 L12: 2.7656 REMARK 3 L13: 1.0443 L23: 1.7887 REMARK 3 S TENSOR REMARK 3 S11: 0.1349 S12: -0.9235 S13: 0.1439 REMARK 3 S21: 1.6178 S22: -0.3225 S23: -0.3886 REMARK 3 S31: -0.1957 S32: 0.8704 S33: 0.1866 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'C' AND RESID 32 THROUGH 334) REMARK 3 ORIGIN FOR THE GROUP (A): -36.3787 24.4307 -16.5127 REMARK 3 T TENSOR REMARK 3 T11: 0.1863 T22: 0.2576 REMARK 3 T33: 0.1860 T12: -0.0213 REMARK 3 T13: -0.0229 T23: 0.0466 REMARK 3 L TENSOR REMARK 3 L11: 1.7320 L22: 3.4184 REMARK 3 L33: 3.3224 L12: 0.3173 REMARK 3 L13: 0.3140 L23: -0.6363 REMARK 3 S TENSOR REMARK 3 S11: -0.0280 S12: 0.0700 S13: -0.1159 REMARK 3 S21: -0.2020 S22: 0.1208 S23: 0.1617 REMARK 3 S31: 0.4600 S32: -0.2277 S33: -0.0900 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN 'D' AND RESID 1745 THROUGH 1752) REMARK 3 ORIGIN FOR THE GROUP (A): -41.2836 30.0722 -28.6372 REMARK 3 T TENSOR REMARK 3 T11: 1.1353 T22: 0.7645 REMARK 3 T33: 0.6738 T12: -0.1587 REMARK 3 T13: -0.0785 T23: 0.3376 REMARK 3 L TENSOR REMARK 3 L11: 7.8807 L22: 7.7925 REMARK 3 L33: 1.0130 L12: -3.8447 REMARK 3 L13: -1.6755 L23: 2.7886 REMARK 3 S TENSOR REMARK 3 S11: 0.4101 S12: 0.3816 S13: -0.0473 REMARK 3 S21: -0.3842 S22: -0.5397 S23: -0.3265 REMARK 3 S31: 0.5393 S32: 0.1038 S33: 0.1286 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8WXV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-NOV-23. REMARK 100 THE DEPOSITION ID IS D_1300042238. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9779 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23662 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.4700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.29200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS, PH 5.5, 25% PEG 3350, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 20 REMARK 465 SER A 21 REMARK 465 HIS A 22 REMARK 465 MET A 23 REMARK 465 THR A 24 REMARK 465 GLN A 25 REMARK 465 SER A 26 REMARK 465 LYS A 27 REMARK 465 PRO A 28 REMARK 465 THR A 29 REMARK 465 PRO A 30 REMARK 465 VAL A 31 REMARK 465 ASP A 212 REMARK 465 ASP A 213 REMARK 465 TYR B 1753 REMARK 465 THR B 1754 REMARK 465 GLY C 20 REMARK 465 SER C 21 REMARK 465 HIS C 22 REMARK 465 MET C 23 REMARK 465 THR C 24 REMARK 465 GLN C 25 REMARK 465 SER C 26 REMARK 465 LYS C 27 REMARK 465 PRO C 28 REMARK 465 THR C 29 REMARK 465 PRO C 30 REMARK 465 VAL C 31 REMARK 465 ASP C 211 REMARK 465 ASP C 212 REMARK 465 ASP C 213 REMARK 465 TYR D 1753 REMARK 465 THR D 1754 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 120 CG CD CE NZ REMARK 470 ASP A 211 CG OD1 OD2 REMARK 470 ASN A 214 CG OD1 ND2 REMARK 470 LYS A 227 CG CD CE NZ REMARK 470 LYS A 245 CG CD CE NZ REMARK 470 GLU A 292 CG CD OE1 OE2 REMARK 470 LYS C 78 CG CD CE NZ REMARK 470 ARG C 181 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 227 CG CD CE NZ REMARK 470 LYS C 256 CG CD CE NZ REMARK 470 GLU C 292 CG CD OE1 OE2 REMARK 470 GLN C 298 CG CD OE1 NE2 REMARK 470 LYS C 331 CG CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 TYR C 243 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS C 296 CD - CE - NZ ANGL. DEV. = -18.1 DEGREES REMARK 500 THR C 301 CA - CB - CG2 ANGL. DEV. = -10.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 259 -37.15 -130.33 REMARK 500 REMARK 500 REMARK: NULL DBREF 8WXV A 24 334 UNP P61964 WDR5_HUMAN 24 334 DBREF 8WXV B 1745 1754 PDB 8WXV 8WXV 1745 1754 DBREF 8WXV C 24 334 UNP P61964 WDR5_HUMAN 24 334 DBREF 8WXV D 1745 1754 PDB 8WXV 8WXV 1745 1754 SEQADV 8WXV GLY A 20 UNP P61964 EXPRESSION TAG SEQADV 8WXV SER A 21 UNP P61964 EXPRESSION TAG SEQADV 8WXV HIS A 22 UNP P61964 EXPRESSION TAG SEQADV 8WXV MET A 23 UNP P61964 EXPRESSION TAG SEQADV 8WXV GLY C 20 UNP P61964 EXPRESSION TAG SEQADV 8WXV SER C 21 UNP P61964 EXPRESSION TAG SEQADV 8WXV HIS C 22 UNP P61964 EXPRESSION TAG SEQADV 8WXV MET C 23 UNP P61964 EXPRESSION TAG SEQRES 1 A 315 GLY SER HIS MET THR GLN SER LYS PRO THR PRO VAL LYS SEQRES 2 A 315 PRO ASN TYR ALA LEU LYS PHE THR LEU ALA GLY HIS THR SEQRES 3 A 315 LYS ALA VAL SER SER VAL LYS PHE SER PRO ASN GLY GLU SEQRES 4 A 315 TRP LEU ALA SER SER SER ALA ASP LYS LEU ILE LYS ILE SEQRES 5 A 315 TRP GLY ALA TYR ASP GLY LYS PHE GLU LYS THR ILE SER SEQRES 6 A 315 GLY HIS LYS LEU GLY ILE SER ASP VAL ALA TRP SER SER SEQRES 7 A 315 ASP SER ASN LEU LEU VAL SER ALA SER ASP ASP LYS THR SEQRES 8 A 315 LEU LYS ILE TRP ASP VAL SER SER GLY LYS CYS LEU LYS SEQRES 9 A 315 THR LEU LYS GLY HIS SER ASN TYR VAL PHE CYS CYS ASN SEQRES 10 A 315 PHE ASN PRO GLN SER ASN LEU ILE VAL SER GLY SER PHE SEQRES 11 A 315 ASP GLU SER VAL ARG ILE TRP ASP VAL LYS THR GLY LYS SEQRES 12 A 315 CYS LEU LYS THR LEU PRO ALA HIS SER ASP PRO VAL SER SEQRES 13 A 315 ALA VAL HIS PHE ASN ARG ASP GLY SER LEU ILE VAL SER SEQRES 14 A 315 SER SER TYR ASP GLY LEU CYS ARG ILE TRP ASP THR ALA SEQRES 15 A 315 SER GLY GLN CYS LEU LYS THR LEU ILE ASP ASP ASP ASN SEQRES 16 A 315 PRO PRO VAL SER PHE VAL LYS PHE SER PRO ASN GLY LYS SEQRES 17 A 315 TYR ILE LEU ALA ALA THR LEU ASP ASN THR LEU LYS LEU SEQRES 18 A 315 TRP ASP TYR SER LYS GLY LYS CYS LEU LYS THR TYR THR SEQRES 19 A 315 GLY HIS LYS ASN GLU LYS TYR CYS ILE PHE ALA ASN PHE SEQRES 20 A 315 SER VAL THR GLY GLY LYS TRP ILE VAL SER GLY SER GLU SEQRES 21 A 315 ASP ASN LEU VAL TYR ILE TRP ASN LEU GLN THR LYS GLU SEQRES 22 A 315 ILE VAL GLN LYS LEU GLN GLY HIS THR ASP VAL VAL ILE SEQRES 23 A 315 SER THR ALA CYS HIS PRO THR GLU ASN ILE ILE ALA SER SEQRES 24 A 315 ALA ALA LEU GLU ASN ASP LYS THR ILE LYS LEU TRP LYS SEQRES 25 A 315 SER ASP CYS SEQRES 1 B 10 GLY CYS ALA ARG SER GLU GLY PHE TYR THR SEQRES 1 C 315 GLY SER HIS MET THR GLN SER LYS PRO THR PRO VAL LYS SEQRES 2 C 315 PRO ASN TYR ALA LEU LYS PHE THR LEU ALA GLY HIS THR SEQRES 3 C 315 LYS ALA VAL SER SER VAL LYS PHE SER PRO ASN GLY GLU SEQRES 4 C 315 TRP LEU ALA SER SER SER ALA ASP LYS LEU ILE LYS ILE SEQRES 5 C 315 TRP GLY ALA TYR ASP GLY LYS PHE GLU LYS THR ILE SER SEQRES 6 C 315 GLY HIS LYS LEU GLY ILE SER ASP VAL ALA TRP SER SER SEQRES 7 C 315 ASP SER ASN LEU LEU VAL SER ALA SER ASP ASP LYS THR SEQRES 8 C 315 LEU LYS ILE TRP ASP VAL SER SER GLY LYS CYS LEU LYS SEQRES 9 C 315 THR LEU LYS GLY HIS SER ASN TYR VAL PHE CYS CYS ASN SEQRES 10 C 315 PHE ASN PRO GLN SER ASN LEU ILE VAL SER GLY SER PHE SEQRES 11 C 315 ASP GLU SER VAL ARG ILE TRP ASP VAL LYS THR GLY LYS SEQRES 12 C 315 CYS LEU LYS THR LEU PRO ALA HIS SER ASP PRO VAL SER SEQRES 13 C 315 ALA VAL HIS PHE ASN ARG ASP GLY SER LEU ILE VAL SER SEQRES 14 C 315 SER SER TYR ASP GLY LEU CYS ARG ILE TRP ASP THR ALA SEQRES 15 C 315 SER GLY GLN CYS LEU LYS THR LEU ILE ASP ASP ASP ASN SEQRES 16 C 315 PRO PRO VAL SER PHE VAL LYS PHE SER PRO ASN GLY LYS SEQRES 17 C 315 TYR ILE LEU ALA ALA THR LEU ASP ASN THR LEU LYS LEU SEQRES 18 C 315 TRP ASP TYR SER LYS GLY LYS CYS LEU LYS THR TYR THR SEQRES 19 C 315 GLY HIS LYS ASN GLU LYS TYR CYS ILE PHE ALA ASN PHE SEQRES 20 C 315 SER VAL THR GLY GLY LYS TRP ILE VAL SER GLY SER GLU SEQRES 21 C 315 ASP ASN LEU VAL TYR ILE TRP ASN LEU GLN THR LYS GLU SEQRES 22 C 315 ILE VAL GLN LYS LEU GLN GLY HIS THR ASP VAL VAL ILE SEQRES 23 C 315 SER THR ALA CYS HIS PRO THR GLU ASN ILE ILE ALA SER SEQRES 24 C 315 ALA ALA LEU GLU ASN ASP LYS THR ILE LYS LEU TRP LYS SEQRES 25 C 315 SER ASP CYS SEQRES 1 D 10 GLY CYS ALA ARG SER GLU GLY PHE TYR THR FORMUL 5 HOH *220(H2 O) HELIX 1 AA1 CYS B 1746 GLY B 1751 1 6 HELIX 2 AA2 CYS D 1746 GLY D 1751 1 6 SHEET 1 AA1 4 ALA A 36 LEU A 41 0 SHEET 2 AA1 4 ILE A 327 LYS A 331 -1 O ILE A 327 N LEU A 41 SHEET 3 AA1 4 ILE A 315 ALA A 320 -1 N ILE A 316 O TRP A 330 SHEET 4 AA1 4 VAL A 304 CYS A 309 -1 N ALA A 308 O ALA A 317 SHEET 1 AA2 4 VAL A 48 PHE A 53 0 SHEET 2 AA2 4 TRP A 59 SER A 64 -1 O ALA A 61 N LYS A 52 SHEET 3 AA2 4 ILE A 69 GLY A 73 -1 O TRP A 72 N LEU A 60 SHEET 4 AA2 4 PHE A 79 ILE A 83 -1 O GLU A 80 N ILE A 71 SHEET 1 AA3 4 ILE A 90 TRP A 95 0 SHEET 2 AA3 4 LEU A 101 SER A 106 -1 O VAL A 103 N ALA A 94 SHEET 3 AA3 4 LEU A 111 ASP A 115 -1 O TRP A 114 N LEU A 102 SHEET 4 AA3 4 CYS A 121 LEU A 125 -1 O LEU A 125 N LEU A 111 SHEET 1 AA4 4 VAL A 132 PHE A 137 0 SHEET 2 AA4 4 LEU A 143 SER A 148 -1 O VAL A 145 N ASN A 136 SHEET 3 AA4 4 VAL A 153 ASP A 157 -1 O TRP A 156 N ILE A 144 SHEET 4 AA4 4 CYS A 163 LEU A 167 -1 O LEU A 167 N VAL A 153 SHEET 1 AA5 4 VAL A 174 PHE A 179 0 SHEET 2 AA5 4 LEU A 185 SER A 190 -1 O VAL A 187 N HIS A 178 SHEET 3 AA5 4 CYS A 195 ASP A 199 -1 O TRP A 198 N ILE A 186 SHEET 4 AA5 4 CYS A 205 LEU A 209 -1 O LYS A 207 N ILE A 197 SHEET 1 AA6 4 VAL A 217 PHE A 222 0 SHEET 2 AA6 4 TYR A 228 THR A 233 -1 O LEU A 230 N LYS A 221 SHEET 3 AA6 4 THR A 237 ASP A 242 -1 O TRP A 241 N ILE A 229 SHEET 4 AA6 4 LYS A 247 TYR A 252 -1 O LEU A 249 N LEU A 240 SHEET 1 AA7 4 ALA A 264 SER A 267 0 SHEET 2 AA7 4 TRP A 273 GLY A 277 -1 O TRP A 273 N SER A 267 SHEET 3 AA7 4 VAL A 283 ASN A 287 -1 O TYR A 284 N SER A 276 SHEET 4 AA7 4 ILE A 293 LEU A 297 -1 O VAL A 294 N ILE A 285 SHEET 1 AA8 4 ALA C 36 LEU C 41 0 SHEET 2 AA8 4 ILE C 327 LYS C 331 -1 O ILE C 327 N LEU C 41 SHEET 3 AA8 4 ILE C 315 ALA C 320 -1 N SER C 318 O LYS C 328 SHEET 4 AA8 4 VAL C 304 CYS C 309 -1 N ALA C 308 O ALA C 317 SHEET 1 AA9 4 VAL C 48 PHE C 53 0 SHEET 2 AA9 4 TRP C 59 SER C 64 -1 O ALA C 61 N LYS C 52 SHEET 3 AA9 4 ILE C 69 GLY C 73 -1 O TRP C 72 N LEU C 60 SHEET 4 AA9 4 PHE C 79 ILE C 83 -1 O ILE C 83 N ILE C 69 SHEET 1 AB1 4 ILE C 90 TRP C 95 0 SHEET 2 AB1 4 LEU C 101 SER C 106 -1 O ALA C 105 N SER C 91 SHEET 3 AB1 4 LEU C 111 ASP C 115 -1 O TRP C 114 N LEU C 102 SHEET 4 AB1 4 CYS C 121 LEU C 125 -1 O LEU C 122 N ILE C 113 SHEET 1 AB2 4 VAL C 132 PHE C 137 0 SHEET 2 AB2 4 LEU C 143 SER C 148 -1 O VAL C 145 N ASN C 136 SHEET 3 AB2 4 VAL C 153 ASP C 157 -1 O TRP C 156 N ILE C 144 SHEET 4 AB2 4 CYS C 163 LEU C 167 -1 O LEU C 167 N VAL C 153 SHEET 1 AB3 4 VAL C 174 PHE C 179 0 SHEET 2 AB3 4 LEU C 185 SER C 190 -1 O VAL C 187 N HIS C 178 SHEET 3 AB3 4 CYS C 195 ASP C 199 -1 O TRP C 198 N ILE C 186 SHEET 4 AB3 4 CYS C 205 LEU C 209 -1 O LEU C 206 N ILE C 197 SHEET 1 AB4 4 VAL C 217 PHE C 222 0 SHEET 2 AB4 4 TYR C 228 THR C 233 -1 O LEU C 230 N LYS C 221 SHEET 3 AB4 4 THR C 237 ASP C 242 -1 O TRP C 241 N ILE C 229 SHEET 4 AB4 4 LYS C 247 TYR C 252 -1 O LYS C 247 N ASP C 242 SHEET 1 AB5 4 ALA C 264 SER C 267 0 SHEET 2 AB5 4 TRP C 273 SER C 276 -1 O TRP C 273 N SER C 267 SHEET 3 AB5 4 VAL C 283 ASN C 287 -1 O TRP C 286 N ILE C 274 SHEET 4 AB5 4 ILE C 293 LEU C 297 -1 O VAL C 294 N ILE C 285 CRYST1 46.904 61.499 64.774 110.34 91.27 112.39 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021320 0.008782 0.004178 0.00000 SCALE2 0.000000 0.017586 0.007339 0.00000 SCALE3 0.000000 0.000000 0.016733 0.00000