HEADER NUCLEAR PROTEIN 30-OCT-23 8WXX TITLE STRUCTURE OF WDR5 IN COMPLEX WITH WIN MOTIF CONTAINING SET1B TITLE 2 E1750R/G1751V COMPND MOL_ID: 1; COMPND 2 MOLECULE: WD REPEAT-CONTAINING PROTEIN 5; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BMP2-INDUCED 3-KB GENE PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: SET1B; COMPND 8 CHAIN: C, D; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: WDR5, BIG3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS WDR5, MBD3C, WIN MOTIF, CHROMATIN, NUCLEAR PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.XU,Y.YANG REVDAT 1 26-JUN-24 8WXX 0 JRNL AUTH Y.YANG,L.XU,S.ZHANG,L.YAO,Y.DING,W.LI,X.CHEN JRNL TITL STRUCTURAL STUDIES OF WDR5 IN COMPLEX WITH MBD3C WIN MOTIF JRNL TITL 2 REVEAL A UNIQUE BINDING MODE. JRNL REF J.BIOL.CHEM. 07468 2024 JRNL REFN ESSN 1083-351X JRNL PMID 38876301 JRNL DOI 10.1016/J.JBC.2024.107468 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.19.2_4158: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.21 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 37928 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.630 REMARK 3 FREE R VALUE TEST SET COUNT : 3654 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.2100 - 6.1900 0.98 1370 162 0.1745 0.2038 REMARK 3 2 6.1900 - 4.9300 1.00 1394 119 0.1691 0.2278 REMARK 3 3 4.9200 - 4.3000 1.00 1348 129 0.1260 0.1491 REMARK 3 4 4.3000 - 3.9100 1.00 1348 132 0.1329 0.1488 REMARK 3 5 3.9100 - 3.6300 1.00 1347 119 0.1445 0.1741 REMARK 3 6 3.6300 - 3.4200 1.00 1360 145 0.1432 0.1817 REMARK 3 7 3.4200 - 3.2500 1.00 1322 148 0.1559 0.1883 REMARK 3 8 3.2500 - 3.1100 1.00 1329 152 0.1569 0.2032 REMARK 3 9 3.1100 - 2.9900 1.00 1324 127 0.1684 0.1903 REMARK 3 10 2.9900 - 2.8800 1.00 1356 126 0.1695 0.2154 REMARK 3 11 2.8800 - 2.7900 1.00 1334 132 0.1773 0.2201 REMARK 3 12 2.7900 - 2.7100 1.00 1289 156 0.1809 0.2150 REMARK 3 13 2.7100 - 2.6400 1.00 1351 131 0.1782 0.2183 REMARK 3 14 2.6400 - 2.5800 1.00 1311 145 0.1879 0.2459 REMARK 3 15 2.5800 - 2.5200 0.99 1291 148 0.1947 0.2210 REMARK 3 16 2.5200 - 2.4700 0.99 1281 166 0.1982 0.2424 REMARK 3 17 2.4700 - 2.4200 0.99 1314 148 0.2007 0.2219 REMARK 3 18 2.4200 - 2.3700 0.99 1324 133 0.2070 0.2478 REMARK 3 19 2.3700 - 2.3300 0.99 1306 148 0.2176 0.2672 REMARK 3 20 2.3300 - 2.2900 0.98 1297 135 0.2246 0.2580 REMARK 3 21 2.2900 - 2.2500 0.99 1294 152 0.2355 0.2856 REMARK 3 22 2.2500 - 2.2200 0.97 1281 125 0.2411 0.2816 REMARK 3 23 2.2200 - 2.1900 0.98 1263 171 0.2379 0.2874 REMARK 3 24 2.1900 - 2.1500 0.98 1253 142 0.2475 0.3006 REMARK 3 25 2.1500 - 2.1300 0.98 1307 127 0.2489 0.2722 REMARK 3 26 2.1300 - 2.1000 0.95 1280 136 0.2590 0.3055 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.160 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4943 REMARK 3 ANGLE : 1.127 6697 REMARK 3 CHIRALITY : 0.086 754 REMARK 3 PLANARITY : 0.006 830 REMARK 3 DIHEDRAL : 7.699 650 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 32 THROUGH 334) REMARK 3 ORIGIN FOR THE GROUP (A): 17.7527 12.3143 13.8104 REMARK 3 T TENSOR REMARK 3 T11: 0.2032 T22: 0.1813 REMARK 3 T33: 0.1090 T12: -0.0073 REMARK 3 T13: 0.0128 T23: 0.0399 REMARK 3 L TENSOR REMARK 3 L11: 3.1112 L22: 2.6080 REMARK 3 L33: 2.6482 L12: -0.7475 REMARK 3 L13: -0.7318 L23: 0.3918 REMARK 3 S TENSOR REMARK 3 S11: 0.0289 S12: 0.0030 S13: -0.1295 REMARK 3 S21: -0.0725 S22: -0.0529 S23: 0.0537 REMARK 3 S31: 0.0304 S32: -0.1702 S33: 0.0289 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 32 THROUGH 334) REMARK 3 ORIGIN FOR THE GROUP (A): 14.7413 35.5170 46.0992 REMARK 3 T TENSOR REMARK 3 T11: 0.1778 T22: 0.1007 REMARK 3 T33: 0.1683 T12: 0.0456 REMARK 3 T13: 0.0292 T23: -0.0083 REMARK 3 L TENSOR REMARK 3 L11: 1.7326 L22: 2.3587 REMARK 3 L33: 2.9008 L12: 0.5264 REMARK 3 L13: -0.2140 L23: -0.5815 REMARK 3 S TENSOR REMARK 3 S11: 0.0108 S12: 0.1001 S13: -0.0350 REMARK 3 S21: -0.1630 S22: -0.0565 S23: -0.2354 REMARK 3 S31: -0.2139 S32: -0.0227 S33: 0.0516 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'C' AND RESID 1745 THROUGH 1753) REMARK 3 ORIGIN FOR THE GROUP (A): 8.0501 40.2311 57.2901 REMARK 3 T TENSOR REMARK 3 T11: 0.3117 T22: 0.2006 REMARK 3 T33: 0.2068 T12: 0.0636 REMARK 3 T13: -0.0006 T23: -0.0429 REMARK 3 L TENSOR REMARK 3 L11: 4.0921 L22: 2.0052 REMARK 3 L33: 4.9380 L12: -1.5012 REMARK 3 L13: -0.2449 L23: -3.6575 REMARK 3 S TENSOR REMARK 3 S11: -0.0315 S12: -0.3704 S13: 0.1622 REMARK 3 S21: 0.6525 S22: -0.0697 S23: -0.1778 REMARK 3 S31: -0.4186 S32: -0.1957 S33: 0.1266 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN 'D' AND RESID 1745 THROUGH 1753) REMARK 3 ORIGIN FOR THE GROUP (A): 23.8495 16.8373 2.2176 REMARK 3 T TENSOR REMARK 3 T11: 0.4315 T22: 0.2881 REMARK 3 T33: 0.2076 T12: -0.0401 REMARK 3 T13: 0.0321 T23: 0.0610 REMARK 3 L TENSOR REMARK 3 L11: 5.3734 L22: 2.0029 REMARK 3 L33: 6.3543 L12: -3.9505 REMARK 3 L13: -3.8345 L23: 8.1678 REMARK 3 S TENSOR REMARK 3 S11: -0.0613 S12: 0.6939 S13: 0.1139 REMARK 3 S21: -1.3667 S22: 0.1656 S23: 0.0178 REMARK 3 S31: -0.7223 S32: -0.0562 S33: -0.1348 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8WXX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-NOV-23. REMARK 100 THE DEPOSITION ID IS D_1300042252. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9779 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37965 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.3500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.47400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE, PH 5.5, 16% PEG REMARK 280 4000, 10% 2-PROPANOL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 57.90050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.62200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 57.90050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.62200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 20 REMARK 465 SER A 21 REMARK 465 HIS A 22 REMARK 465 MET A 23 REMARK 465 THR A 24 REMARK 465 GLN A 25 REMARK 465 SER A 26 REMARK 465 LYS A 27 REMARK 465 PRO A 28 REMARK 465 THR A 29 REMARK 465 PRO A 30 REMARK 465 VAL A 31 REMARK 465 GLY B 20 REMARK 465 SER B 21 REMARK 465 HIS B 22 REMARK 465 MET B 23 REMARK 465 THR B 24 REMARK 465 GLN B 25 REMARK 465 SER B 26 REMARK 465 LYS B 27 REMARK 465 PRO B 28 REMARK 465 THR B 29 REMARK 465 PRO B 30 REMARK 465 VAL B 31 REMARK 465 THR C 1754 REMARK 465 THR D 1754 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN B 204 CG CD OE1 NE2 REMARK 470 ASN B 323 CG OD1 ND2 REMARK 470 TYR C1753 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 TYR D1753 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 87 CA - CB - CG ANGL. DEV. = 22.7 DEGREES REMARK 500 LYS A 87 CD - CE - NZ ANGL. DEV. = -16.7 DEGREES REMARK 500 ILE A 210 CG1 - CB - CG2 ANGL. DEV. = 14.1 DEGREES REMARK 500 ASN A 214 C - N - CA ANGL. DEV. = -17.1 DEGREES REMARK 500 LYS A 259 CD - CE - NZ ANGL. DEV. = -18.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 212 -16.34 66.89 REMARK 500 LEU A 234 35.23 -83.21 REMARK 500 LYS A 259 -33.11 -131.55 REMARK 500 LEU B 234 42.44 -81.73 REMARK 500 LYS B 259 -33.08 -130.76 REMARK 500 ASP B 324 -61.07 -121.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 214 PRO A 215 136.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 606 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH B 607 DISTANCE = 6.83 ANGSTROMS DBREF 8WXX A 24 334 UNP P61964 WDR5_HUMAN 24 334 DBREF 8WXX B 24 334 UNP P61964 WDR5_HUMAN 24 334 DBREF 8WXX C 1745 1754 PDB 8WXX 8WXX 1745 1754 DBREF 8WXX D 1745 1754 PDB 8WXX 8WXX 1745 1754 SEQADV 8WXX GLY A 20 UNP P61964 EXPRESSION TAG SEQADV 8WXX SER A 21 UNP P61964 EXPRESSION TAG SEQADV 8WXX HIS A 22 UNP P61964 EXPRESSION TAG SEQADV 8WXX MET A 23 UNP P61964 EXPRESSION TAG SEQADV 8WXX GLY B 20 UNP P61964 EXPRESSION TAG SEQADV 8WXX SER B 21 UNP P61964 EXPRESSION TAG SEQADV 8WXX HIS B 22 UNP P61964 EXPRESSION TAG SEQADV 8WXX MET B 23 UNP P61964 EXPRESSION TAG SEQRES 1 A 315 GLY SER HIS MET THR GLN SER LYS PRO THR PRO VAL LYS SEQRES 2 A 315 PRO ASN TYR ALA LEU LYS PHE THR LEU ALA GLY HIS THR SEQRES 3 A 315 LYS ALA VAL SER SER VAL LYS PHE SER PRO ASN GLY GLU SEQRES 4 A 315 TRP LEU ALA SER SER SER ALA ASP LYS LEU ILE LYS ILE SEQRES 5 A 315 TRP GLY ALA TYR ASP GLY LYS PHE GLU LYS THR ILE SER SEQRES 6 A 315 GLY HIS LYS LEU GLY ILE SER ASP VAL ALA TRP SER SER SEQRES 7 A 315 ASP SER ASN LEU LEU VAL SER ALA SER ASP ASP LYS THR SEQRES 8 A 315 LEU LYS ILE TRP ASP VAL SER SER GLY LYS CYS LEU LYS SEQRES 9 A 315 THR LEU LYS GLY HIS SER ASN TYR VAL PHE CYS CYS ASN SEQRES 10 A 315 PHE ASN PRO GLN SER ASN LEU ILE VAL SER GLY SER PHE SEQRES 11 A 315 ASP GLU SER VAL ARG ILE TRP ASP VAL LYS THR GLY LYS SEQRES 12 A 315 CYS LEU LYS THR LEU PRO ALA HIS SER ASP PRO VAL SER SEQRES 13 A 315 ALA VAL HIS PHE ASN ARG ASP GLY SER LEU ILE VAL SER SEQRES 14 A 315 SER SER TYR ASP GLY LEU CYS ARG ILE TRP ASP THR ALA SEQRES 15 A 315 SER GLY GLN CYS LEU LYS THR LEU ILE ASP ASP ASP ASN SEQRES 16 A 315 PRO PRO VAL SER PHE VAL LYS PHE SER PRO ASN GLY LYS SEQRES 17 A 315 TYR ILE LEU ALA ALA THR LEU ASP ASN THR LEU LYS LEU SEQRES 18 A 315 TRP ASP TYR SER LYS GLY LYS CYS LEU LYS THR TYR THR SEQRES 19 A 315 GLY HIS LYS ASN GLU LYS TYR CYS ILE PHE ALA ASN PHE SEQRES 20 A 315 SER VAL THR GLY GLY LYS TRP ILE VAL SER GLY SER GLU SEQRES 21 A 315 ASP ASN LEU VAL TYR ILE TRP ASN LEU GLN THR LYS GLU SEQRES 22 A 315 ILE VAL GLN LYS LEU GLN GLY HIS THR ASP VAL VAL ILE SEQRES 23 A 315 SER THR ALA CYS HIS PRO THR GLU ASN ILE ILE ALA SER SEQRES 24 A 315 ALA ALA LEU GLU ASN ASP LYS THR ILE LYS LEU TRP LYS SEQRES 25 A 315 SER ASP CYS SEQRES 1 B 315 GLY SER HIS MET THR GLN SER LYS PRO THR PRO VAL LYS SEQRES 2 B 315 PRO ASN TYR ALA LEU LYS PHE THR LEU ALA GLY HIS THR SEQRES 3 B 315 LYS ALA VAL SER SER VAL LYS PHE SER PRO ASN GLY GLU SEQRES 4 B 315 TRP LEU ALA SER SER SER ALA ASP LYS LEU ILE LYS ILE SEQRES 5 B 315 TRP GLY ALA TYR ASP GLY LYS PHE GLU LYS THR ILE SER SEQRES 6 B 315 GLY HIS LYS LEU GLY ILE SER ASP VAL ALA TRP SER SER SEQRES 7 B 315 ASP SER ASN LEU LEU VAL SER ALA SER ASP ASP LYS THR SEQRES 8 B 315 LEU LYS ILE TRP ASP VAL SER SER GLY LYS CYS LEU LYS SEQRES 9 B 315 THR LEU LYS GLY HIS SER ASN TYR VAL PHE CYS CYS ASN SEQRES 10 B 315 PHE ASN PRO GLN SER ASN LEU ILE VAL SER GLY SER PHE SEQRES 11 B 315 ASP GLU SER VAL ARG ILE TRP ASP VAL LYS THR GLY LYS SEQRES 12 B 315 CYS LEU LYS THR LEU PRO ALA HIS SER ASP PRO VAL SER SEQRES 13 B 315 ALA VAL HIS PHE ASN ARG ASP GLY SER LEU ILE VAL SER SEQRES 14 B 315 SER SER TYR ASP GLY LEU CYS ARG ILE TRP ASP THR ALA SEQRES 15 B 315 SER GLY GLN CYS LEU LYS THR LEU ILE ASP ASP ASP ASN SEQRES 16 B 315 PRO PRO VAL SER PHE VAL LYS PHE SER PRO ASN GLY LYS SEQRES 17 B 315 TYR ILE LEU ALA ALA THR LEU ASP ASN THR LEU LYS LEU SEQRES 18 B 315 TRP ASP TYR SER LYS GLY LYS CYS LEU LYS THR TYR THR SEQRES 19 B 315 GLY HIS LYS ASN GLU LYS TYR CYS ILE PHE ALA ASN PHE SEQRES 20 B 315 SER VAL THR GLY GLY LYS TRP ILE VAL SER GLY SER GLU SEQRES 21 B 315 ASP ASN LEU VAL TYR ILE TRP ASN LEU GLN THR LYS GLU SEQRES 22 B 315 ILE VAL GLN LYS LEU GLN GLY HIS THR ASP VAL VAL ILE SEQRES 23 B 315 SER THR ALA CYS HIS PRO THR GLU ASN ILE ILE ALA SER SEQRES 24 B 315 ALA ALA LEU GLU ASN ASP LYS THR ILE LYS LEU TRP LYS SEQRES 25 B 315 SER ASP CYS SEQRES 1 C 10 GLY CYS ALA ARG SER ARG VAL PHE TYR THR SEQRES 1 D 10 GLY CYS ALA ARG SER ARG VAL PHE TYR THR FORMUL 5 HOH *391(H2 O) HELIX 1 AA1 CYS C 1746 ARG C 1750 5 5 HELIX 2 AA2 CYS D 1746 ARG D 1750 5 5 SHEET 1 AA1 4 ALA A 36 LEU A 41 0 SHEET 2 AA1 4 ILE A 327 LYS A 331 -1 O ILE A 327 N LEU A 41 SHEET 3 AA1 4 ILE A 315 ALA A 320 -1 N ILE A 316 O TRP A 330 SHEET 4 AA1 4 VAL A 304 CYS A 309 -1 N ALA A 308 O ALA A 317 SHEET 1 AA2 4 VAL A 48 PHE A 53 0 SHEET 2 AA2 4 TRP A 59 SER A 64 -1 O ALA A 61 N LYS A 52 SHEET 3 AA2 4 ILE A 69 GLY A 73 -1 O TRP A 72 N LEU A 60 SHEET 4 AA2 4 PHE A 79 ILE A 83 -1 O GLU A 80 N ILE A 71 SHEET 1 AA3 4 ILE A 90 TRP A 95 0 SHEET 2 AA3 4 LEU A 101 SER A 106 -1 O VAL A 103 N ALA A 94 SHEET 3 AA3 4 LEU A 111 ASP A 115 -1 O TRP A 114 N LEU A 102 SHEET 4 AA3 4 CYS A 121 LEU A 125 -1 O LEU A 122 N ILE A 113 SHEET 1 AA4 4 VAL A 132 PHE A 137 0 SHEET 2 AA4 4 LEU A 143 SER A 148 -1 O VAL A 145 N ASN A 136 SHEET 3 AA4 4 VAL A 153 ASP A 157 -1 O TRP A 156 N ILE A 144 SHEET 4 AA4 4 CYS A 163 LEU A 167 -1 O LEU A 167 N VAL A 153 SHEET 1 AA5 4 VAL A 174 PHE A 179 0 SHEET 2 AA5 4 LEU A 185 SER A 190 -1 O VAL A 187 N HIS A 178 SHEET 3 AA5 4 CYS A 195 ASP A 199 -1 O TRP A 198 N ILE A 186 SHEET 4 AA5 4 CYS A 205 LEU A 209 -1 O LEU A 209 N CYS A 195 SHEET 1 AA6 4 VAL A 217 PHE A 222 0 SHEET 2 AA6 4 TYR A 228 THR A 233 -1 O LEU A 230 N LYS A 221 SHEET 3 AA6 4 THR A 237 ASP A 242 -1 O TRP A 241 N ILE A 229 SHEET 4 AA6 4 LYS A 247 TYR A 252 -1 O LEU A 249 N LEU A 240 SHEET 1 AA7 4 ALA A 264 SER A 267 0 SHEET 2 AA7 4 TRP A 273 SER A 276 -1 O TRP A 273 N SER A 267 SHEET 3 AA7 4 VAL A 283 ASN A 287 -1 O TYR A 284 N SER A 276 SHEET 4 AA7 4 ILE A 293 LEU A 297 -1 O VAL A 294 N ILE A 285 SHEET 1 AA8 4 ALA B 36 LEU B 41 0 SHEET 2 AA8 4 ILE B 327 LYS B 331 -1 O ILE B 327 N LEU B 41 SHEET 3 AA8 4 ILE B 315 ALA B 320 -1 N ILE B 316 O TRP B 330 SHEET 4 AA8 4 VAL B 304 CYS B 309 -1 N ALA B 308 O ALA B 317 SHEET 1 AA9 4 VAL B 48 PHE B 53 0 SHEET 2 AA9 4 TRP B 59 SER B 64 -1 O ALA B 61 N LYS B 52 SHEET 3 AA9 4 ILE B 69 GLY B 73 -1 O TRP B 72 N LEU B 60 SHEET 4 AA9 4 PHE B 79 ILE B 83 -1 O GLU B 80 N ILE B 71 SHEET 1 AB1 4 ILE B 90 TRP B 95 0 SHEET 2 AB1 4 LEU B 101 SER B 106 -1 O VAL B 103 N ALA B 94 SHEET 3 AB1 4 LEU B 111 ASP B 115 -1 O TRP B 114 N LEU B 102 SHEET 4 AB1 4 CYS B 121 LEU B 125 -1 O LEU B 122 N ILE B 113 SHEET 1 AB2 4 VAL B 132 PHE B 137 0 SHEET 2 AB2 4 LEU B 143 SER B 148 -1 O VAL B 145 N ASN B 136 SHEET 3 AB2 4 VAL B 153 ASP B 157 -1 O TRP B 156 N ILE B 144 SHEET 4 AB2 4 CYS B 163 LEU B 167 -1 O LEU B 167 N VAL B 153 SHEET 1 AB3 4 VAL B 174 PHE B 179 0 SHEET 2 AB3 4 LEU B 185 SER B 190 -1 O VAL B 187 N HIS B 178 SHEET 3 AB3 4 CYS B 195 ASP B 199 -1 O TRP B 198 N ILE B 186 SHEET 4 AB3 4 CYS B 205 LEU B 209 -1 O LEU B 209 N CYS B 195 SHEET 1 AB4 4 VAL B 217 PHE B 222 0 SHEET 2 AB4 4 ILE B 229 THR B 233 -1 O LEU B 230 N LYS B 221 SHEET 3 AB4 4 THR B 237 ASP B 242 -1 O TRP B 241 N ILE B 229 SHEET 4 AB4 4 LYS B 247 TYR B 252 -1 O TYR B 252 N LEU B 238 SHEET 1 AB5 4 ALA B 264 SER B 267 0 SHEET 2 AB5 4 TRP B 273 SER B 276 -1 O TRP B 273 N SER B 267 SHEET 3 AB5 4 VAL B 283 ASN B 287 -1 O TYR B 284 N SER B 276 SHEET 4 AB5 4 ILE B 293 LEU B 297 -1 O VAL B 294 N ILE B 285 CRYST1 115.801 47.244 129.675 90.00 112.97 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008636 0.000000 0.003659 0.00000 SCALE2 0.000000 0.021167 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008375 0.00000