data_8X1V # _entry.id 8X1V # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8X1V pdb_00008x1v 10.2210/pdb8x1v/pdb WWPDB D_1300042476 ? ? BMRB 36612 ? 10.13018/BMR36612 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2024-01-17 2 'Structure model' 1 1 2024-02-07 3 'Structure model' 1 2 2024-04-03 4 'Structure model' 1 3 2024-05-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' citation 4 3 'Structure model' citation_author 5 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.pdbx_database_id_DOI' 7 2 'Structure model' '_citation.pdbx_database_id_PubMed' 8 2 'Structure model' '_citation.title' 9 2 'Structure model' '_citation.year' 10 3 'Structure model' '_citation.journal_volume' 11 3 'Structure model' '_citation.page_first' 12 3 'Structure model' '_citation.page_last' 13 3 'Structure model' '_citation_author.identifier_ORCID' 14 4 'Structure model' '_database_2.pdbx_DOI' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr . _pdbx_database_status.entry_id 8X1V _pdbx_database_status.recvd_initial_deposition_date 2023-11-08 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs . _pdbx_database_status.status_code_nmr_data REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'NMR structure of a bimolecular parallel G-quadruplex formed by AAGGG repeats from pathogenic RFC1 gene' _pdbx_database_related.db_id 36612 _pdbx_database_related.content_type unspecified # _pdbx_contact_author.id 2 _pdbx_contact_author.email dahan@sjtu.edu.cn _pdbx_contact_author.name_first Da _pdbx_contact_author.name_last Han _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-0804-2964 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Wang, Y.' 1 0000-0001-9891-5628 'Guo, P.' 2 0000-0001-7760-5786 'Han, D.' 3 0000-0002-0804-2964 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 52 _citation.language ? _citation.page_first 2698 _citation.page_last 2710 _citation.title ;Structural investigation of pathogenic RFC1 AAGGG pentanucleotide repeats reveals a role of G-quadruplex in dysregulated gene expression in CANVAS. ; _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gkae032 _citation.pdbx_database_id_PubMed 38266156 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wang, Y.' 1 ? primary 'Wang, J.' 2 ? primary 'Yan, Z.' 3 ? primary 'Hou, J.' 4 ? primary 'Wan, L.' 5 ? primary 'Yang, Y.' 6 ? primary 'Liu, Y.' 7 ? primary 'Yi, J.' 8 ? primary 'Guo, P.' 9 ? primary 'Han, D.' 10 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description ;DNA (5'-D(*AP*AP*GP*GP*GP*AP*AP*GP*GP*GP*AP*A)-3') ; _entity.formula_weight 3809.518 _entity.pdbx_number_of_molecules 2 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DA)(DA)(DG)(DG)(DG)(DA)(DA)(DG)(DG)(DG)(DA)(DA)' _entity_poly.pdbx_seq_one_letter_code_can AAGGGAAGGGAA _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DA n 1 3 DG n 1 4 DG n 1 5 DG n 1 6 DA n 1 7 DA n 1 8 DG n 1 9 DG n 1 10 DG n 1 11 DA n 1 12 DA n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 12 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 1 1 DA DA A . n A 1 2 DA 2 2 2 DA DA A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DG 5 5 5 DG DG A . n A 1 6 DA 6 6 6 DA DA A . n A 1 7 DA 7 7 7 DA DA A . n A 1 8 DG 8 8 8 DG DG A . n A 1 9 DG 9 9 9 DG DG A . n A 1 10 DG 10 10 10 DG DG A . n A 1 11 DA 11 11 11 DA DA A . n A 1 12 DA 12 12 12 DA DA A . n B 1 1 DA 1 13 13 DA DA B . n B 1 2 DA 2 14 14 DA DA B . n B 1 3 DG 3 15 15 DG DG B . n B 1 4 DG 4 16 16 DG DG B . n B 1 5 DG 5 17 17 DG DG B . n B 1 6 DA 6 18 18 DA DA B . n B 1 7 DA 7 19 19 DA DA B . n B 1 8 DG 8 20 20 DG DG B . n B 1 9 DG 9 21 21 DG DG B . n B 1 10 DG 10 22 22 DG DG B . n B 1 11 DA 11 23 23 DA DA B . n B 1 12 DA 12 24 24 DA DA B . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8X1V _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 8X1V _struct.title 'NMR structure of a bimolecular parallel G-quadruplex formed by AAGGG repeats from pathogenic RFC1 gene' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8X1V _struct_keywords.text 'DNA, G-quadruplex, AAGGG repeats, RFC1 gene' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8X1V _struct_ref.pdbx_db_accession 8X1V _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8X1V A 1 ? 12 ? 8X1V 1 ? 12 ? 1 12 2 1 8X1V B 1 ? 12 ? 8X1V 13 ? 24 ? 13 24 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'NMR Distance Restraints' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DA 1 N7 ? ? ? 1_555 B DA 1 N6 ? ? A DA 1 B DA 13 1_555 ? ? ? ? ? ? 'DA-DA MISPAIR' ? ? ? hydrog2 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DG 8 O6 ? ? A DG 3 A DG 8 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog3 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DG 8 N7 ? ? A DG 3 A DG 8 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog4 hydrog ? ? A DG 3 N7 ? ? ? 1_555 B DG 8 N2 ? ? A DG 3 B DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog5 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DG 8 N1 ? ? A DG 3 B DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DA 6 N7 ? ? A DG 4 A DA 6 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog7 hydrog ? ? A DG 4 N3 ? ? ? 1_555 A DA 6 N6 ? ? A DG 4 A DA 6 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog8 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DG 9 O6 ? ? A DG 4 A DG 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog9 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DG 9 N7 ? ? A DG 4 A DG 9 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog10 hydrog ? ? A DG 4 N7 ? ? ? 1_555 B DG 9 N2 ? ? A DG 4 B DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog11 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DG 9 N1 ? ? A DG 4 B DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog12 hydrog ? ? A DG 5 N1 ? ? ? 1_555 A DG 10 O6 ? ? A DG 5 A DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog13 hydrog ? ? A DG 5 N2 ? ? ? 1_555 A DG 10 N7 ? ? A DG 5 A DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog14 hydrog ? ? A DG 5 N7 ? ? ? 1_555 B DG 10 N2 ? ? A DG 5 B DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog15 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DG 10 N1 ? ? A DG 5 B DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog16 hydrog ? ? A DG 8 N1 ? ? ? 1_555 B DG 3 O6 ? ? A DG 8 B DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog17 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B DG 3 N7 ? ? A DG 8 B DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog18 hydrog ? ? A DG 9 N1 ? ? ? 1_555 B DG 4 O6 ? ? A DG 9 B DG 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog19 hydrog ? ? A DG 9 N2 ? ? ? 1_555 B DG 4 N7 ? ? A DG 9 B DG 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog20 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DG 5 O6 ? ? A DG 10 B DG 17 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog21 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DG 5 N7 ? ? A DG 10 B DG 17 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog22 hydrog ? ? B DG 3 N1 ? ? ? 1_555 B DG 8 O6 ? ? B DG 15 B DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog23 hydrog ? ? B DG 3 N2 ? ? ? 1_555 B DG 8 N7 ? ? B DG 15 B DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog24 hydrog ? ? B DG 4 N2 ? ? ? 1_555 B DA 6 N1 ? ? B DG 16 B DA 18 1_555 ? ? ? ? ? ? 'DG-DA MISPAIR' ? ? ? hydrog25 hydrog ? ? B DG 4 N1 ? ? ? 1_555 B DG 9 O6 ? ? B DG 16 B DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog26 hydrog ? ? B DG 4 N2 ? ? ? 1_555 B DG 9 N7 ? ? B DG 16 B DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog27 hydrog ? ? B DG 5 N1 ? ? ? 1_555 B DG 10 O6 ? ? B DG 17 B DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog28 hydrog ? ? B DG 5 N2 ? ? ? 1_555 B DG 10 N7 ? ? B DG 17 B DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog29 hydrog ? ? B DA 6 N6 ? ? ? 1_555 B DG 9 N7 ? ? B DA 18 B DG 21 1_555 ? ? ? ? ? ? 'DA-DG MISPAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 "HO5'" B DA 13 ? ? OP1 B DA 14 ? ? 1.35 2 2 "HO5'" B DA 13 ? ? OP1 B DA 14 ? ? 1.49 3 3 "HO5'" B DA 13 ? ? OP1 B DA 14 ? ? 1.48 4 4 "HO5'" B DA 13 ? ? OP1 B DA 14 ? ? 1.48 5 5 "HO5'" B DA 13 ? ? OP1 B DA 14 ? ? 1.47 6 7 "HO5'" B DA 13 ? ? OP1 B DA 14 ? ? 1.47 7 9 "HO5'" B DA 13 ? ? OP1 B DA 14 ? ? 1.49 8 10 "HO5'" B DA 13 ? ? OP1 B DA 14 ? ? 1.57 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C1'" A DA 1 ? ? "O4'" A DA 1 ? ? "C4'" A DA 1 ? ? 104.03 110.10 -6.07 1.00 N 2 1 "O4'" A DA 1 ? ? "C1'" A DA 1 ? ? N9 A DA 1 ? ? 114.39 108.30 6.09 0.30 N 3 1 C5 A DA 1 ? ? C6 A DA 1 ? ? N1 A DA 1 ? ? 120.95 117.70 3.25 0.50 N 4 1 N1 A DA 1 ? ? C6 A DA 1 ? ? N6 A DA 1 ? ? 114.05 118.60 -4.55 0.60 N 5 1 N1 A DA 2 ? ? C6 A DA 2 ? ? N6 A DA 2 ? ? 114.14 118.60 -4.46 0.60 N 6 1 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 112.54 108.30 4.24 0.30 N 7 1 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 113.14 108.30 4.84 0.30 N 8 1 C5 A DA 6 ? ? C6 A DA 6 ? ? N1 A DA 6 ? ? 121.04 117.70 3.34 0.50 N 9 1 N1 A DA 6 ? ? C6 A DA 6 ? ? N6 A DA 6 ? ? 113.09 118.60 -5.51 0.60 N 10 1 "O4'" A DA 7 ? ? "C1'" A DA 7 ? ? N9 A DA 7 ? ? 112.79 108.30 4.49 0.30 N 11 1 C4 A DA 7 ? ? C5 A DA 7 ? ? C6 A DA 7 ? ? 113.62 117.00 -3.38 0.50 N 12 1 C5 A DA 7 ? ? C6 A DA 7 ? ? N1 A DA 7 ? ? 121.22 117.70 3.52 0.50 N 13 1 N1 A DA 7 ? ? C6 A DA 7 ? ? N6 A DA 7 ? ? 112.23 118.60 -6.37 0.60 N 14 1 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 112.59 108.30 4.29 0.30 N 15 1 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 113.45 108.30 5.15 0.30 N 16 1 N1 A DA 11 ? ? C6 A DA 11 ? ? N6 A DA 11 ? ? 114.46 118.60 -4.14 0.60 N 17 1 "O4'" A DA 12 ? ? "C1'" A DA 12 ? ? N9 A DA 12 ? ? 110.29 108.30 1.99 0.30 N 18 1 C4 A DA 12 ? ? C5 A DA 12 ? ? C6 A DA 12 ? ? 113.98 117.00 -3.02 0.50 N 19 1 N1 A DA 12 ? ? C6 A DA 12 ? ? N6 A DA 12 ? ? 114.08 118.60 -4.52 0.60 N 20 1 "O4'" B DA 13 ? ? "C1'" B DA 13 ? ? N9 B DA 13 ? ? 114.37 108.30 6.07 0.30 N 21 1 N1 B DA 13 ? ? C6 B DA 13 ? ? N6 B DA 13 ? ? 114.16 118.60 -4.44 0.60 N 22 1 N1 B DA 14 ? ? C6 B DA 14 ? ? N6 B DA 14 ? ? 113.99 118.60 -4.61 0.60 N 23 1 "O4'" B DG 17 ? ? "C1'" B DG 17 ? ? N9 B DG 17 ? ? 114.32 108.30 6.02 0.30 N 24 1 "O4'" B DA 18 ? ? "C1'" B DA 18 ? ? N9 B DA 18 ? ? 110.34 108.30 2.04 0.30 N 25 1 C5 B DA 18 ? ? C6 B DA 18 ? ? N1 B DA 18 ? ? 120.93 117.70 3.23 0.50 N 26 1 "O4'" B DA 19 ? ? "C1'" B DA 19 ? ? N9 B DA 19 ? ? 111.81 108.30 3.51 0.30 N 27 1 C5 B DA 19 ? ? C6 B DA 19 ? ? N1 B DA 19 ? ? 120.77 117.70 3.07 0.50 N 28 1 "O4'" B DG 20 ? ? "C1'" B DG 20 ? ? N9 B DG 20 ? ? 115.33 108.30 7.03 0.30 N 29 1 "O4'" B DG 21 ? ? "C1'" B DG 21 ? ? N9 B DG 21 ? ? 110.20 108.30 1.90 0.30 N 30 1 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? N9 B DG 22 ? ? 110.53 108.30 2.23 0.30 N 31 1 "O4'" B DA 23 ? ? "C1'" B DA 23 ? ? "C2'" B DA 23 ? ? 100.37 105.90 -5.53 0.80 N 32 1 "O4'" B DA 23 ? ? "C1'" B DA 23 ? ? N9 B DA 23 ? ? 110.61 108.30 2.31 0.30 N 33 1 N1 B DA 23 ? ? C6 B DA 23 ? ? N6 B DA 23 ? ? 114.68 118.60 -3.92 0.60 N 34 1 N1 B DA 24 ? ? C6 B DA 24 ? ? N6 B DA 24 ? ? 113.83 118.60 -4.77 0.60 N 35 2 "O4'" A DA 1 ? ? "C1'" A DA 1 ? ? N9 A DA 1 ? ? 113.11 108.30 4.81 0.30 N 36 2 "O4'" A DA 2 ? ? "C1'" A DA 2 ? ? N9 A DA 2 ? ? 111.47 108.30 3.17 0.30 N 37 2 N1 A DA 2 ? ? C6 A DA 2 ? ? N6 A DA 2 ? ? 114.74 118.60 -3.86 0.60 N 38 2 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 110.33 108.30 2.03 0.30 N 39 2 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 112.24 108.30 3.94 0.30 N 40 2 "O4'" A DA 7 ? ? "C1'" A DA 7 ? ? N9 A DA 7 ? ? 112.45 108.30 4.15 0.30 N 41 2 N1 A DA 7 ? ? C6 A DA 7 ? ? N6 A DA 7 ? ? 114.50 118.60 -4.10 0.60 N 42 2 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 116.62 108.30 8.32 0.30 N 43 2 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 112.34 108.30 4.04 0.30 N 44 2 "O4'" A DA 11 ? ? "C1'" A DA 11 ? ? N9 A DA 11 ? ? 112.97 108.30 4.67 0.30 N 45 2 N1 A DA 11 ? ? C6 A DA 11 ? ? N6 A DA 11 ? ? 114.99 118.60 -3.61 0.60 N 46 2 "O4'" B DA 13 ? ? "C1'" B DA 13 ? ? N9 B DA 13 ? ? 112.77 108.30 4.47 0.30 N 47 2 "O4'" B DG 17 ? ? "C1'" B DG 17 ? ? N9 B DG 17 ? ? 113.64 108.30 5.34 0.30 N 48 2 "O4'" B DA 18 ? ? "C1'" B DA 18 ? ? N9 B DA 18 ? ? 111.18 108.30 2.88 0.30 N 49 2 "O4'" B DA 19 ? ? "C1'" B DA 19 ? ? N9 B DA 19 ? ? 112.09 108.30 3.79 0.30 N 50 2 "O4'" B DG 20 ? ? "C1'" B DG 20 ? ? N9 B DG 20 ? ? 114.07 108.30 5.77 0.30 N 51 2 "O4'" B DA 23 ? ? "C1'" B DA 23 ? ? "C2'" B DA 23 ? ? 100.20 105.90 -5.70 0.80 N 52 2 "O4'" B DA 23 ? ? "C1'" B DA 23 ? ? N9 B DA 23 ? ? 111.68 108.30 3.38 0.30 N 53 2 N1 B DA 24 ? ? C6 B DA 24 ? ? N6 B DA 24 ? ? 114.56 118.60 -4.04 0.60 N 54 3 "O4'" A DA 1 ? ? "C1'" A DA 1 ? ? N9 A DA 1 ? ? 113.52 108.30 5.22 0.30 N 55 3 N1 A DA 1 ? ? C6 A DA 1 ? ? N6 A DA 1 ? ? 114.74 118.60 -3.86 0.60 N 56 3 "O4'" A DA 2 ? ? "C1'" A DA 2 ? ? N9 A DA 2 ? ? 111.90 108.30 3.60 0.30 N 57 3 C5 A DA 6 ? ? C6 A DA 6 ? ? N1 A DA 6 ? ? 120.71 117.70 3.01 0.50 N 58 3 N1 A DA 6 ? ? C6 A DA 6 ? ? N6 A DA 6 ? ? 113.57 118.60 -5.03 0.60 N 59 3 "O4'" A DA 7 ? ? "C1'" A DA 7 ? ? N9 A DA 7 ? ? 111.30 108.30 3.00 0.30 N 60 3 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 116.47 108.30 8.17 0.30 N 61 3 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 111.03 108.30 2.73 0.30 N 62 3 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 112.87 108.30 4.57 0.30 N 63 3 "O4'" A DA 11 ? ? "C1'" A DA 11 ? ? N9 A DA 11 ? ? 113.13 108.30 4.83 0.30 N 64 3 "O4'" B DA 13 ? ? "C1'" B DA 13 ? ? N9 B DA 13 ? ? 113.96 108.30 5.66 0.30 N 65 3 N1 B DA 14 ? ? C6 B DA 14 ? ? N6 B DA 14 ? ? 114.70 118.60 -3.90 0.60 N 66 3 "O4'" B DA 19 ? ? "C1'" B DA 19 ? ? N9 B DA 19 ? ? 110.72 108.30 2.42 0.30 N 67 3 "O4'" B DG 20 ? ? "C1'" B DG 20 ? ? N9 B DG 20 ? ? 114.25 108.30 5.95 0.30 N 68 3 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? N9 B DG 22 ? ? 110.11 108.30 1.81 0.30 N 69 3 "O4'" B DA 23 ? ? "C1'" B DA 23 ? ? "C2'" B DA 23 ? ? 101.08 105.90 -4.82 0.80 N 70 3 N1 B DA 23 ? ? C6 B DA 23 ? ? N6 B DA 23 ? ? 114.97 118.60 -3.63 0.60 N 71 3 "O4'" B DA 24 ? ? "C1'" B DA 24 ? ? N9 B DA 24 ? ? 110.37 108.30 2.07 0.30 N 72 4 "O4'" A DA 1 ? ? "C1'" A DA 1 ? ? N9 A DA 1 ? ? 113.19 108.30 4.89 0.30 N 73 4 N1 A DA 1 ? ? C6 A DA 1 ? ? N6 A DA 1 ? ? 114.91 118.60 -3.69 0.60 N 74 4 "O4'" A DA 2 ? ? "C1'" A DA 2 ? ? N9 A DA 2 ? ? 111.35 108.30 3.05 0.30 N 75 4 N1 A DA 2 ? ? C6 A DA 2 ? ? N6 A DA 2 ? ? 114.61 118.60 -3.99 0.60 N 76 4 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 110.15 108.30 1.85 0.30 N 77 4 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 113.15 108.30 4.85 0.30 N 78 4 C5 A DA 6 ? ? C6 A DA 6 ? ? N1 A DA 6 ? ? 121.00 117.70 3.30 0.50 N 79 4 N1 A DA 6 ? ? C6 A DA 6 ? ? N6 A DA 6 ? ? 112.93 118.60 -5.67 0.60 N 80 4 "O4'" A DA 7 ? ? "C1'" A DA 7 ? ? N9 A DA 7 ? ? 112.34 108.30 4.04 0.30 N 81 4 N1 A DA 7 ? ? C6 A DA 7 ? ? N6 A DA 7 ? ? 113.17 118.60 -5.43 0.60 N 82 4 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 115.17 108.30 6.87 0.30 N 83 4 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 113.29 108.30 4.99 0.30 N 84 4 "O4'" A DA 11 ? ? "C1'" A DA 11 ? ? N9 A DA 11 ? ? 113.13 108.30 4.83 0.30 N 85 4 N1 A DA 11 ? ? C6 A DA 11 ? ? N6 A DA 11 ? ? 114.93 118.60 -3.67 0.60 N 86 4 "O4'" A DA 12 ? ? "C1'" A DA 12 ? ? N9 A DA 12 ? ? 111.37 108.30 3.07 0.30 N 87 4 "O4'" B DA 13 ? ? "C1'" B DA 13 ? ? N9 B DA 13 ? ? 114.30 108.30 6.00 0.30 N 88 4 "O4'" B DA 14 ? ? "C1'" B DA 14 ? ? N9 B DA 14 ? ? 110.31 108.30 2.01 0.30 N 89 4 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 111.56 108.30 3.26 0.30 N 90 4 "O4'" B DA 19 ? ? "C1'" B DA 19 ? ? N9 B DA 19 ? ? 110.75 108.30 2.45 0.30 N 91 4 "O4'" B DG 20 ? ? "C1'" B DG 20 ? ? N9 B DG 20 ? ? 114.30 108.30 6.00 0.30 N 92 4 "O4'" B DA 23 ? ? "C1'" B DA 23 ? ? "C2'" B DA 23 ? ? 100.04 105.90 -5.86 0.80 N 93 4 "O4'" B DA 23 ? ? "C1'" B DA 23 ? ? N9 B DA 23 ? ? 111.80 108.30 3.50 0.30 N 94 4 N1 B DA 24 ? ? C6 B DA 24 ? ? N6 B DA 24 ? ? 114.79 118.60 -3.81 0.60 N 95 5 "O4'" A DA 1 ? ? "C1'" A DA 1 ? ? N9 A DA 1 ? ? 112.95 108.30 4.65 0.30 N 96 5 N1 A DA 1 ? ? C6 A DA 1 ? ? N6 A DA 1 ? ? 114.68 118.60 -3.92 0.60 N 97 5 "O4'" A DA 2 ? ? "C1'" A DA 2 ? ? N9 A DA 2 ? ? 111.73 108.30 3.43 0.30 N 98 5 N1 A DA 2 ? ? C6 A DA 2 ? ? N6 A DA 2 ? ? 114.53 118.60 -4.07 0.60 N 99 5 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 110.63 108.30 2.33 0.30 N 100 5 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.13 108.30 1.83 0.30 N 101 5 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 111.95 108.30 3.65 0.30 N 102 5 C5 A DA 6 ? ? C6 A DA 6 ? ? N1 A DA 6 ? ? 120.98 117.70 3.28 0.50 N 103 5 N1 A DA 6 ? ? C6 A DA 6 ? ? N6 A DA 6 ? ? 112.76 118.60 -5.84 0.60 N 104 5 "O4'" A DA 7 ? ? "C1'" A DA 7 ? ? N9 A DA 7 ? ? 111.82 108.30 3.52 0.30 N 105 5 N1 A DA 7 ? ? C6 A DA 7 ? ? N6 A DA 7 ? ? 113.02 118.60 -5.58 0.60 N 106 5 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 114.51 108.30 6.21 0.30 N 107 5 "C3'" A DG 10 ? ? "C2'" A DG 10 ? ? "C1'" A DG 10 ? ? 96.83 102.40 -5.57 0.80 N 108 5 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 113.89 108.30 5.59 0.30 N 109 5 "O4'" A DA 11 ? ? "C1'" A DA 11 ? ? N9 A DA 11 ? ? 114.40 108.30 6.10 0.30 N 110 5 N1 A DA 11 ? ? C6 A DA 11 ? ? N6 A DA 11 ? ? 114.76 118.60 -3.84 0.60 N 111 5 "O4'" A DA 12 ? ? "C1'" A DA 12 ? ? N9 A DA 12 ? ? 111.46 108.30 3.16 0.30 N 112 5 "O4'" B DA 13 ? ? "C1'" B DA 13 ? ? N9 B DA 13 ? ? 114.81 108.30 6.51 0.30 N 113 5 N1 B DA 14 ? ? C6 B DA 14 ? ? N6 B DA 14 ? ? 114.77 118.60 -3.83 0.60 N 114 5 "O4'" B DG 17 ? ? "C1'" B DG 17 ? ? N9 B DG 17 ? ? 113.09 108.30 4.79 0.30 N 115 5 "O4'" B DA 19 ? ? "C1'" B DA 19 ? ? N9 B DA 19 ? ? 110.39 108.30 2.09 0.30 N 116 5 "O4'" B DG 20 ? ? "C1'" B DG 20 ? ? N9 B DG 20 ? ? 114.45 108.30 6.15 0.30 N 117 5 "C1'" B DA 23 ? ? "O4'" B DA 23 ? ? "C4'" B DA 23 ? ? 103.87 110.10 -6.23 1.00 N 118 5 "O4'" B DA 23 ? ? "C1'" B DA 23 ? ? "C2'" B DA 23 ? ? 100.56 105.90 -5.34 0.80 N 119 5 "O4'" B DA 23 ? ? "C1'" B DA 23 ? ? N9 B DA 23 ? ? 111.24 108.30 2.94 0.30 N 120 5 "O4'" B DA 24 ? ? "C1'" B DA 24 ? ? N9 B DA 24 ? ? 110.22 108.30 1.92 0.30 N 121 5 N1 B DA 24 ? ? C6 B DA 24 ? ? N6 B DA 24 ? ? 114.78 118.60 -3.82 0.60 N 122 6 "O4'" A DA 1 ? ? "C1'" A DA 1 ? ? N9 A DA 1 ? ? 113.90 108.30 5.60 0.30 N 123 6 "O4'" A DA 2 ? ? "C1'" A DA 2 ? ? N9 A DA 2 ? ? 111.87 108.30 3.57 0.30 N 124 6 N1 A DA 2 ? ? C6 A DA 2 ? ? N6 A DA 2 ? ? 114.79 118.60 -3.81 0.60 N 125 6 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 112.54 108.30 4.24 0.30 N 126 6 N1 A DA 6 ? ? C6 A DA 6 ? ? N6 A DA 6 ? ? 113.93 118.60 -4.67 0.60 N 127 6 "O4'" A DA 7 ? ? "C1'" A DA 7 ? ? N9 A DA 7 ? ? 112.47 108.30 4.17 0.30 N 128 6 N1 A DA 7 ? ? C6 A DA 7 ? ? N6 A DA 7 ? ? 113.30 118.60 -5.30 0.60 N 129 6 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 115.60 108.30 7.30 0.30 N 130 6 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 110.15 108.30 1.85 0.30 N 131 6 "C3'" A DG 10 ? ? "C2'" A DG 10 ? ? "C1'" A DG 10 ? ? 96.68 102.40 -5.72 0.80 N 132 6 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 114.86 108.30 6.56 0.30 N 133 6 "O4'" A DA 11 ? ? "C1'" A DA 11 ? ? N9 A DA 11 ? ? 112.24 108.30 3.94 0.30 N 134 6 "O4'" A DA 12 ? ? "C1'" A DA 12 ? ? N9 A DA 12 ? ? 110.15 108.30 1.85 0.30 N 135 6 "O4'" B DA 13 ? ? "C1'" B DA 13 ? ? N9 B DA 13 ? ? 113.03 108.30 4.73 0.30 N 136 6 N1 B DA 13 ? ? C6 B DA 13 ? ? N6 B DA 13 ? ? 114.95 118.60 -3.65 0.60 N 137 6 "O4'" B DA 14 ? ? "C1'" B DA 14 ? ? N9 B DA 14 ? ? 113.30 108.30 5.00 0.30 N 138 6 "O4'" B DG 15 ? ? "C1'" B DG 15 ? ? N9 B DG 15 ? ? 110.39 108.30 2.09 0.30 N 139 6 "O4'" B DG 17 ? ? "C1'" B DG 17 ? ? N9 B DG 17 ? ? 113.97 108.30 5.67 0.30 N 140 6 "O4'" B DA 18 ? ? "C1'" B DA 18 ? ? N9 B DA 18 ? ? 110.34 108.30 2.04 0.30 N 141 6 "O4'" B DA 19 ? ? "C1'" B DA 19 ? ? N9 B DA 19 ? ? 111.99 108.30 3.69 0.30 N 142 6 "O4'" B DG 20 ? ? "C1'" B DG 20 ? ? N9 B DG 20 ? ? 114.35 108.30 6.05 0.30 N 143 6 "C1'" B DA 23 ? ? "O4'" B DA 23 ? ? "C4'" B DA 23 ? ? 104.04 110.10 -6.06 1.00 N 144 6 "O4'" B DA 23 ? ? "C1'" B DA 23 ? ? "C2'" B DA 23 ? ? 100.42 105.90 -5.48 0.80 N 145 6 "O4'" B DA 23 ? ? "C1'" B DA 23 ? ? N9 B DA 23 ? ? 111.55 108.30 3.25 0.30 N 146 6 N1 B DA 23 ? ? C6 B DA 23 ? ? N6 B DA 23 ? ? 114.86 118.60 -3.74 0.60 N 147 6 "O4'" B DA 24 ? ? "C1'" B DA 24 ? ? N9 B DA 24 ? ? 111.63 108.30 3.33 0.30 N 148 7 "O4'" A DA 1 ? ? "C1'" A DA 1 ? ? N9 A DA 1 ? ? 113.42 108.30 5.12 0.30 N 149 7 N1 A DA 1 ? ? C6 A DA 1 ? ? N6 A DA 1 ? ? 114.73 118.60 -3.87 0.60 N 150 7 "O4'" A DA 2 ? ? "C1'" A DA 2 ? ? N9 A DA 2 ? ? 111.32 108.30 3.02 0.30 N 151 7 N1 A DA 2 ? ? C6 A DA 2 ? ? N6 A DA 2 ? ? 114.80 118.60 -3.80 0.60 N 152 7 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 110.43 108.30 2.13 0.30 N 153 7 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 112.56 108.30 4.26 0.30 N 154 7 C5 A DA 6 ? ? C6 A DA 6 ? ? N1 A DA 6 ? ? 120.76 117.70 3.06 0.50 N 155 7 N1 A DA 6 ? ? C6 A DA 6 ? ? N6 A DA 6 ? ? 113.46 118.60 -5.14 0.60 N 156 7 "O4'" A DA 7 ? ? "C1'" A DA 7 ? ? N9 A DA 7 ? ? 112.27 108.30 3.97 0.30 N 157 7 N1 A DA 7 ? ? C6 A DA 7 ? ? N6 A DA 7 ? ? 113.46 118.60 -5.14 0.60 N 158 7 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 114.96 108.30 6.66 0.30 N 159 7 "C3'" A DG 10 ? ? "C2'" A DG 10 ? ? "C1'" A DG 10 ? ? 97.43 102.40 -4.97 0.80 N 160 7 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 114.04 108.30 5.74 0.30 N 161 7 "O4'" A DA 11 ? ? "C1'" A DA 11 ? ? N9 A DA 11 ? ? 114.37 108.30 6.07 0.30 N 162 7 "O4'" A DA 12 ? ? "C1'" A DA 12 ? ? N9 A DA 12 ? ? 111.61 108.30 3.31 0.30 N 163 7 "O4'" B DA 13 ? ? "C1'" B DA 13 ? ? N9 B DA 13 ? ? 113.56 108.30 5.26 0.30 N 164 7 "O4'" B DG 15 ? ? "C1'" B DG 15 ? ? N9 B DG 15 ? ? 110.38 108.30 2.08 0.30 N 165 7 "O4'" B DG 17 ? ? "C1'" B DG 17 ? ? N9 B DG 17 ? ? 114.60 108.30 6.30 0.30 N 166 7 "O4'" B DA 18 ? ? "C1'" B DA 18 ? ? N9 B DA 18 ? ? 113.15 108.30 4.85 0.30 N 167 7 "O4'" B DA 19 ? ? "C1'" B DA 19 ? ? N9 B DA 19 ? ? 112.29 108.30 3.99 0.30 N 168 7 "O4'" B DG 20 ? ? "C1'" B DG 20 ? ? N9 B DG 20 ? ? 115.12 108.30 6.82 0.30 N 169 7 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? N9 B DG 22 ? ? 110.33 108.30 2.03 0.30 N 170 7 "O4'" B DA 23 ? ? "C1'" B DA 23 ? ? "C2'" B DA 23 ? ? 100.06 105.90 -5.84 0.80 N 171 7 "O4'" B DA 23 ? ? "C1'" B DA 23 ? ? N9 B DA 23 ? ? 112.01 108.30 3.71 0.30 N 172 7 "O4'" B DA 24 ? ? "C1'" B DA 24 ? ? N9 B DA 24 ? ? 110.12 108.30 1.82 0.30 N 173 8 "O4'" A DA 1 ? ? "C1'" A DA 1 ? ? N9 A DA 1 ? ? 114.95 108.30 6.65 0.30 N 174 8 N1 A DA 1 ? ? C6 A DA 1 ? ? N6 A DA 1 ? ? 114.97 118.60 -3.63 0.60 N 175 8 "O4'" A DA 2 ? ? "C1'" A DA 2 ? ? N9 A DA 2 ? ? 111.57 108.30 3.27 0.30 N 176 8 N1 A DA 2 ? ? C6 A DA 2 ? ? N6 A DA 2 ? ? 114.63 118.60 -3.97 0.60 N 177 8 C4 A DA 6 ? ? C5 A DA 6 ? ? C6 A DA 6 ? ? 113.84 117.00 -3.16 0.50 N 178 8 C5 A DA 6 ? ? C6 A DA 6 ? ? N1 A DA 6 ? ? 120.90 117.70 3.20 0.50 N 179 8 N1 A DA 6 ? ? C6 A DA 6 ? ? N6 A DA 6 ? ? 112.48 118.60 -6.12 0.60 N 180 8 "O4'" A DA 7 ? ? "C1'" A DA 7 ? ? N9 A DA 7 ? ? 111.02 108.30 2.72 0.30 N 181 8 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 114.37 108.30 6.07 0.30 N 182 8 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 110.46 108.30 2.16 0.30 N 183 8 "C3'" A DG 10 ? ? "C2'" A DG 10 ? ? "C1'" A DG 10 ? ? 97.27 102.40 -5.13 0.80 N 184 8 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 112.91 108.30 4.61 0.30 N 185 8 "O4'" A DA 11 ? ? "C1'" A DA 11 ? ? N9 A DA 11 ? ? 113.63 108.30 5.33 0.30 N 186 8 "O4'" A DA 12 ? ? "C1'" A DA 12 ? ? N9 A DA 12 ? ? 111.48 108.30 3.18 0.30 N 187 8 "O4'" B DA 13 ? ? "C1'" B DA 13 ? ? N9 B DA 13 ? ? 114.15 108.30 5.85 0.30 N 188 8 "O4'" B DA 14 ? ? "C1'" B DA 14 ? ? N9 B DA 14 ? ? 110.21 108.30 1.91 0.30 N 189 8 "O4'" B DG 15 ? ? "C1'" B DG 15 ? ? N9 B DG 15 ? ? 110.48 108.30 2.18 0.30 N 190 8 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 110.41 108.30 2.11 0.30 N 191 8 "O4'" B DA 19 ? ? "C1'" B DA 19 ? ? N9 B DA 19 ? ? 110.63 108.30 2.33 0.30 N 192 8 "O4'" B DG 20 ? ? "C1'" B DG 20 ? ? N9 B DG 20 ? ? 114.12 108.30 5.82 0.30 N 193 8 "O4'" B DG 22 ? ? "C1'" B DG 22 ? ? N9 B DG 22 ? ? 110.33 108.30 2.03 0.30 N 194 8 "O4'" B DA 23 ? ? "C1'" B DA 23 ? ? "C2'" B DA 23 ? ? 99.69 105.90 -6.21 0.80 N 195 8 "O4'" B DA 23 ? ? "C1'" B DA 23 ? ? N9 B DA 23 ? ? 112.37 108.30 4.07 0.30 N 196 8 N1 B DA 23 ? ? C6 B DA 23 ? ? N6 B DA 23 ? ? 114.94 118.60 -3.66 0.60 N 197 8 "O4'" B DA 24 ? ? "C1'" B DA 24 ? ? N9 B DA 24 ? ? 110.21 108.30 1.91 0.30 N 198 9 "O4'" A DA 1 ? ? "C1'" A DA 1 ? ? N9 A DA 1 ? ? 113.08 108.30 4.78 0.30 N 199 9 "O4'" A DA 2 ? ? "C1'" A DA 2 ? ? N9 A DA 2 ? ? 111.34 108.30 3.04 0.30 N 200 9 N1 A DA 2 ? ? C6 A DA 2 ? ? N6 A DA 2 ? ? 114.96 118.60 -3.64 0.60 N 201 9 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 110.43 108.30 2.13 0.30 N 202 9 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 113.94 108.30 5.64 0.30 N 203 9 N1 A DA 6 ? ? C6 A DA 6 ? ? N6 A DA 6 ? ? 113.59 118.60 -5.01 0.60 N 204 9 "O4'" A DA 7 ? ? "C1'" A DA 7 ? ? N9 A DA 7 ? ? 111.80 108.30 3.50 0.30 N 205 9 N1 A DA 7 ? ? C6 A DA 7 ? ? N6 A DA 7 ? ? 113.74 118.60 -4.86 0.60 N 206 9 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 115.66 108.30 7.36 0.30 N 207 9 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 115.22 108.30 6.92 0.30 N 208 9 "O4'" B DA 13 ? ? "C1'" B DA 13 ? ? N9 B DA 13 ? ? 113.28 108.30 4.98 0.30 N 209 9 "O4'" B DG 17 ? ? "C1'" B DG 17 ? ? N9 B DG 17 ? ? 113.32 108.30 5.02 0.30 N 210 9 "O4'" B DA 18 ? ? "C1'" B DA 18 ? ? N9 B DA 18 ? ? 111.09 108.30 2.79 0.30 N 211 9 "O4'" B DA 19 ? ? "C1'" B DA 19 ? ? N9 B DA 19 ? ? 112.00 108.30 3.70 0.30 N 212 9 "O4'" B DG 20 ? ? "C1'" B DG 20 ? ? N9 B DG 20 ? ? 113.79 108.30 5.49 0.30 N 213 9 "O4'" B DA 23 ? ? "C1'" B DA 23 ? ? "C2'" B DA 23 ? ? 100.11 105.90 -5.79 0.80 N 214 9 "O4'" B DA 23 ? ? "C1'" B DA 23 ? ? N9 B DA 23 ? ? 111.54 108.30 3.24 0.30 N 215 9 N1 B DA 24 ? ? C6 B DA 24 ? ? N6 B DA 24 ? ? 114.55 118.60 -4.05 0.60 N 216 10 "O4'" A DA 1 ? ? "C1'" A DA 1 ? ? N9 A DA 1 ? ? 112.30 108.30 4.00 0.30 N 217 10 "O4'" A DA 2 ? ? "C1'" A DA 2 ? ? N9 A DA 2 ? ? 111.82 108.30 3.52 0.30 N 218 10 N1 A DA 2 ? ? C6 A DA 2 ? ? N6 A DA 2 ? ? 114.92 118.60 -3.68 0.60 N 219 10 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 111.25 108.30 2.95 0.30 N 220 10 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 112.25 108.30 3.95 0.30 N 221 10 "O4'" A DA 7 ? ? "C1'" A DA 7 ? ? N9 A DA 7 ? ? 112.60 108.30 4.30 0.30 N 222 10 N1 A DA 7 ? ? C6 A DA 7 ? ? N6 A DA 7 ? ? 114.28 118.60 -4.32 0.60 N 223 10 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 116.33 108.30 8.03 0.30 N 224 10 "C3'" A DG 10 ? ? "C2'" A DG 10 ? ? "C1'" A DG 10 ? ? 97.17 102.40 -5.23 0.80 N 225 10 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 115.29 108.30 6.99 0.30 N 226 10 "O4'" A DA 11 ? ? "C1'" A DA 11 ? ? N9 A DA 11 ? ? 110.81 108.30 2.51 0.30 N 227 10 "O4'" A DA 12 ? ? "C1'" A DA 12 ? ? N9 A DA 12 ? ? 111.54 108.30 3.24 0.30 N 228 10 "O4'" B DA 13 ? ? "C1'" B DA 13 ? ? N9 B DA 13 ? ? 115.06 108.30 6.76 0.30 N 229 10 "O4'" B DA 14 ? ? "C1'" B DA 14 ? ? N9 B DA 14 ? ? 110.57 108.30 2.27 0.30 N 230 10 N1 B DA 14 ? ? C6 B DA 14 ? ? N6 B DA 14 ? ? 114.59 118.60 -4.01 0.60 N 231 10 "O4'" B DG 15 ? ? "C1'" B DG 15 ? ? N9 B DG 15 ? ? 110.93 108.30 2.63 0.30 N 232 10 "O4'" B DG 17 ? ? "C1'" B DG 17 ? ? N9 B DG 17 ? ? 111.04 108.30 2.74 0.30 N 233 10 "O4'" B DA 18 ? ? "C1'" B DA 18 ? ? N9 B DA 18 ? ? 112.86 108.30 4.56 0.30 N 234 10 "O4'" B DA 19 ? ? "C1'" B DA 19 ? ? N9 B DA 19 ? ? 112.79 108.30 4.49 0.30 N 235 10 "O4'" B DG 20 ? ? "C1'" B DG 20 ? ? N9 B DG 20 ? ? 112.78 108.30 4.48 0.30 N 236 10 "C1'" B DA 23 ? ? "O4'" B DA 23 ? ? "C4'" B DA 23 ? ? 103.96 110.10 -6.14 1.00 N 237 10 "C3'" B DA 23 ? ? "C2'" B DA 23 ? ? "C1'" B DA 23 ? ? 97.55 102.40 -4.85 0.80 N 238 10 "O4'" B DA 23 ? ? "C1'" B DA 23 ? ? "C2'" B DA 23 ? ? 100.26 105.90 -5.64 0.80 N 239 10 "O4'" B DA 23 ? ? "C1'" B DA 23 ? ? N9 B DA 23 ? ? 111.98 108.30 3.68 0.30 N 240 10 "O4'" B DA 24 ? ? "C1'" B DA 24 ? ? N9 B DA 24 ? ? 110.51 108.30 2.21 0.30 N 241 10 N1 B DA 24 ? ? C6 B DA 24 ? ? N6 B DA 24 ? ? 114.72 118.60 -3.88 0.60 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DA A 2 ? ? 0.119 'SIDE CHAIN' 2 1 DG A 3 ? ? 0.062 'SIDE CHAIN' 3 1 DG A 4 ? ? 0.062 'SIDE CHAIN' 4 1 DA A 6 ? ? 0.065 'SIDE CHAIN' 5 1 DA A 7 ? ? 0.081 'SIDE CHAIN' 6 1 DG A 9 ? ? 0.082 'SIDE CHAIN' 7 1 DA A 12 ? ? 0.068 'SIDE CHAIN' 8 1 DG B 21 ? ? 0.074 'SIDE CHAIN' 9 1 DA B 24 ? ? 0.093 'SIDE CHAIN' 10 2 DA A 2 ? ? 0.123 'SIDE CHAIN' 11 2 DG A 4 ? ? 0.075 'SIDE CHAIN' 12 2 DA A 6 ? ? 0.069 'SIDE CHAIN' 13 2 DA A 7 ? ? 0.055 'SIDE CHAIN' 14 2 DG A 8 ? ? 0.094 'SIDE CHAIN' 15 2 DG A 9 ? ? 0.098 'SIDE CHAIN' 16 2 DA A 11 ? ? 0.085 'SIDE CHAIN' 17 2 DG B 22 ? ? 0.064 'SIDE CHAIN' 18 2 DA B 24 ? ? 0.107 'SIDE CHAIN' 19 3 DA A 2 ? ? 0.131 'SIDE CHAIN' 20 3 DG A 4 ? ? 0.089 'SIDE CHAIN' 21 3 DG A 5 ? ? 0.059 'SIDE CHAIN' 22 3 DG A 8 ? ? 0.085 'SIDE CHAIN' 23 3 DG A 9 ? ? 0.077 'SIDE CHAIN' 24 3 DA A 12 ? ? 0.065 'SIDE CHAIN' 25 3 DA B 19 ? ? 0.122 'SIDE CHAIN' 26 3 DG B 22 ? ? 0.078 'SIDE CHAIN' 27 3 DA B 24 ? ? 0.055 'SIDE CHAIN' 28 4 DA A 2 ? ? 0.133 'SIDE CHAIN' 29 4 DG A 4 ? ? 0.083 'SIDE CHAIN' 30 4 DA A 7 ? ? 0.089 'SIDE CHAIN' 31 4 DG A 10 ? ? 0.085 'SIDE CHAIN' 32 4 DA B 18 ? ? 0.057 'SIDE CHAIN' 33 4 DG B 21 ? ? 0.066 'SIDE CHAIN' 34 4 DA B 24 ? ? 0.095 'SIDE CHAIN' 35 5 DA A 2 ? ? 0.144 'SIDE CHAIN' 36 5 DA A 7 ? ? 0.075 'SIDE CHAIN' 37 5 DG A 9 ? ? 0.075 'SIDE CHAIN' 38 5 DA B 18 ? ? 0.073 'SIDE CHAIN' 39 5 DA B 19 ? ? 0.099 'SIDE CHAIN' 40 5 DG B 21 ? ? 0.057 'SIDE CHAIN' 41 5 DA B 24 ? ? 0.071 'SIDE CHAIN' 42 6 DA A 2 ? ? 0.122 'SIDE CHAIN' 43 6 DG A 4 ? ? 0.103 'SIDE CHAIN' 44 6 DA A 6 ? ? 0.057 'SIDE CHAIN' 45 6 DA A 7 ? ? 0.085 'SIDE CHAIN' 46 6 DG A 8 ? ? 0.084 'SIDE CHAIN' 47 6 DG A 9 ? ? 0.090 'SIDE CHAIN' 48 6 DA B 14 ? ? 0.079 'SIDE CHAIN' 49 6 DG B 22 ? ? 0.058 'SIDE CHAIN' 50 6 DA B 24 ? ? 0.068 'SIDE CHAIN' 51 7 DA A 2 ? ? 0.124 'SIDE CHAIN' 52 7 DG A 4 ? ? 0.087 'SIDE CHAIN' 53 7 DA A 7 ? ? 0.085 'SIDE CHAIN' 54 7 DG A 8 ? ? 0.063 'SIDE CHAIN' 55 7 DG A 9 ? ? 0.057 'SIDE CHAIN' 56 7 DG A 10 ? ? 0.079 'SIDE CHAIN' 57 7 DA A 11 ? ? 0.056 'SIDE CHAIN' 58 7 DG B 21 ? ? 0.061 'SIDE CHAIN' 59 7 DA B 24 ? ? 0.090 'SIDE CHAIN' 60 8 DA A 2 ? ? 0.114 'SIDE CHAIN' 61 8 DG A 4 ? ? 0.080 'SIDE CHAIN' 62 8 DG A 9 ? ? 0.086 'SIDE CHAIN' 63 8 DA A 12 ? ? 0.086 'SIDE CHAIN' 64 8 DA B 18 ? ? 0.057 'SIDE CHAIN' 65 8 DG B 22 ? ? 0.064 'SIDE CHAIN' 66 8 DA B 24 ? ? 0.081 'SIDE CHAIN' 67 9 DA A 2 ? ? 0.120 'SIDE CHAIN' 68 9 DG A 4 ? ? 0.097 'SIDE CHAIN' 69 9 DA A 7 ? ? 0.088 'SIDE CHAIN' 70 9 DG A 8 ? ? 0.075 'SIDE CHAIN' 71 9 DG A 9 ? ? 0.064 'SIDE CHAIN' 72 9 DG B 21 ? ? 0.069 'SIDE CHAIN' 73 9 DA B 24 ? ? 0.097 'SIDE CHAIN' 74 10 DA A 2 ? ? 0.135 'SIDE CHAIN' 75 10 DA A 6 ? ? 0.055 'SIDE CHAIN' 76 10 DA A 7 ? ? 0.065 'SIDE CHAIN' 77 10 DG A 8 ? ? 0.075 'SIDE CHAIN' 78 10 DG A 9 ? ? 0.064 'SIDE CHAIN' 79 10 DA A 12 ? ? 0.088 'SIDE CHAIN' 80 10 DG B 21 ? ? 0.082 'SIDE CHAIN' 81 10 DA B 24 ? ? 0.086 'SIDE CHAIN' # _pdbx_nmr_ensemble.entry_id 8X1V _pdbx_nmr_ensemble.conformers_calculated_total_number 500 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 8X1V _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents ;0.9 mM DNA (5'-D(*AP*AP*GP*GP*GP*AP*AP*GP*GP*GP*AP*A)-3'), 1 mM sodium phosphate, 150 mM potassium chloride, 99.96% D2O ; _pdbx_nmr_sample_details.solvent_system '99.96% D2O' _pdbx_nmr_sample_details.label aaggg2aa _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details ? # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 ;DNA (5'-D(*AP*AP*GP*GP*GP*AP*AP*GP*GP*GP*AP*A)-3') ; 0.9 ? mM 'natural abundance' 1 'sodium phosphate' 1 ? mM 'natural abundance' 1 'potassium chloride' 150 ? mM 'natural abundance' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 150 _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label 1 _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-1H NOESY' 1 isotropic 2 1 1 '2D 1H-1H COSY' 1 isotropic 3 1 1 '2D 1H-1H TOCSY' 1 isotropic 4 1 1 '2D 1H-13C HMBC' 1 isotropic 5 1 1 '2D 1H-15N HSQC' 1 isotropic # _pdbx_nmr_refine.entry_id 8X1V _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 2 # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 'chemical shift assignment' TopSpin ? 'Bruker Biospin' 2 'structure calculation' Amber ? 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DG OP3 O N N 37 DG P P N N 38 DG OP1 O N N 39 DG OP2 O N N 40 DG "O5'" O N N 41 DG "C5'" C N N 42 DG "C4'" C N R 43 DG "O4'" O N N 44 DG "C3'" C N S 45 DG "O3'" O N N 46 DG "C2'" C N N 47 DG "C1'" C N R 48 DG N9 N Y N 49 DG C8 C Y N 50 DG N7 N Y N 51 DG C5 C Y N 52 DG C6 C N N 53 DG O6 O N N 54 DG N1 N N N 55 DG C2 C N N 56 DG N2 N N N 57 DG N3 N N N 58 DG C4 C Y N 59 DG HOP3 H N N 60 DG HOP2 H N N 61 DG "H5'" H N N 62 DG "H5''" H N N 63 DG "H4'" H N N 64 DG "H3'" H N N 65 DG "HO3'" H N N 66 DG "H2'" H N N 67 DG "H2''" H N N 68 DG "H1'" H N N 69 DG H8 H N N 70 DG H1 H N N 71 DG H21 H N N 72 DG H22 H N N 73 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DG OP3 P sing N N 39 DG OP3 HOP3 sing N N 40 DG P OP1 doub N N 41 DG P OP2 sing N N 42 DG P "O5'" sing N N 43 DG OP2 HOP2 sing N N 44 DG "O5'" "C5'" sing N N 45 DG "C5'" "C4'" sing N N 46 DG "C5'" "H5'" sing N N 47 DG "C5'" "H5''" sing N N 48 DG "C4'" "O4'" sing N N 49 DG "C4'" "C3'" sing N N 50 DG "C4'" "H4'" sing N N 51 DG "O4'" "C1'" sing N N 52 DG "C3'" "O3'" sing N N 53 DG "C3'" "C2'" sing N N 54 DG "C3'" "H3'" sing N N 55 DG "O3'" "HO3'" sing N N 56 DG "C2'" "C1'" sing N N 57 DG "C2'" "H2'" sing N N 58 DG "C2'" "H2''" sing N N 59 DG "C1'" N9 sing N N 60 DG "C1'" "H1'" sing N N 61 DG N9 C8 sing Y N 62 DG N9 C4 sing Y N 63 DG C8 N7 doub Y N 64 DG C8 H8 sing N N 65 DG N7 C5 sing Y N 66 DG C5 C6 sing N N 67 DG C5 C4 doub Y N 68 DG C6 O6 doub N N 69 DG C6 N1 sing N N 70 DG N1 C2 sing N N 71 DG N1 H1 sing N N 72 DG C2 N2 sing N N 73 DG C2 N3 doub N N 74 DG N2 H21 sing N N 75 DG N2 H22 sing N N 76 DG N3 C4 sing N N 77 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 8X1V 'double helix' 8X1V 'parallel strands' 8X1V 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DA 1 1_555 B DA 1 1_555 3.151 -6.822 1.944 36.902 -46.034 163.485 1 A_DA1:DA13_B A 1 ? B 13 ? ? ? 1 A DG 10 1_555 A DG 5 1_555 -1.991 -3.102 0.012 2.972 -0.144 89.949 2 A_DG10:DG5_A A 10 ? A 5 ? 6 3 1 A DG 4 1_555 A DG 9 1_555 1.999 3.093 -0.352 1.998 -0.614 -89.162 3 A_DG4:DG9_A A 4 ? A 9 ? 6 3 1 B DG 9 1_555 B DG 4 1_555 -1.964 -2.992 0.389 0.348 -2.004 95.430 4 B_DG21:DG16_B B 21 ? B 16 ? 6 3 1 B DG 5 1_555 B DG 10 1_555 2.076 3.121 0.354 -6.076 -1.215 -87.731 5 B_DG17:DG22_B B 17 ? B 22 ? 6 3 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 10 1_555 A DG 5 1_555 A DG 4 1_555 A DG 9 1_555 -0.032 -0.288 -3.298 -1.194 -3.297 -21.134 -0.584 0.406 -3.300 8.910 -3.227 -21.420 1 AA_DG10DG4:DG9DG5_AA A 10 ? A 5 ? A 4 ? A 9 ? 1 A DG 4 1_555 A DG 9 1_555 B DG 9 1_555 B DG 4 1_555 1.977 3.182 0.136 -10.517 7.086 -178.727 -1.591 0.988 0.136 -3.543 -5.259 -178.735 2 AB_DG4DG21:DG16DG9_BA A 4 ? A 9 ? B 21 ? B 16 ? # _pdbx_audit_support.funding_organization 'Not funded' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.details ? # _atom_sites.entry_id 8X1V _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O P # loop_