HEADER IMMUNE SYSTEM 10-NOV-23 8X2O TITLE RIPK2 IN COMPLEX WITH K252 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RECEPTOR-INTERACTING SERINE/THREONINE-PROTEIN KINASE 2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CARD-CONTAINING INTERLEUKIN-1 BETA-CONVERTING ENZYME- COMPND 5 ASSOCIATED KINASE,CARD-CONTAINING IL-1 BETA ICE-KINASE,RIP-LIKE- COMPND 6 INTERACTING CLARP KINASE,RECEPTOR-INTERACTING PROTEIN 2,RIP-2, COMPND 7 TYROSINE-PROTEIN KINASE RIPK2; COMPND 8 EC: 2.7.11.1,2.7.10.2; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RIPK2, CARDIAK, RICK, RIP2, UNQ277/PRO314/PRO34092; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS INHIBITOR, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR J.H.YANG,J.H.YANG REVDAT 1 13-NOV-24 8X2O 0 JRNL AUTH J.H.YANG,J.H.YANG JRNL TITL RIPK2 IN COMPLEX WITH K252 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.26 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.26 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 37625 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.213 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.320 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 54.9000 - 5.4500 0.99 2707 153 0.2190 0.2547 REMARK 3 2 5.4500 - 4.3200 1.00 2610 145 0.1795 0.2150 REMARK 3 3 4.3200 - 3.7800 1.00 2575 146 0.1787 0.1979 REMARK 3 4 3.7800 - 3.4300 1.00 2551 143 0.2078 0.2831 REMARK 3 5 3.4300 - 3.1900 1.00 2556 142 0.2254 0.2781 REMARK 3 6 3.1900 - 3.0000 1.00 2537 143 0.2294 0.2669 REMARK 3 7 3.0000 - 2.8500 1.00 2511 141 0.2273 0.2875 REMARK 3 8 2.8500 - 2.7200 1.00 2540 142 0.2304 0.2691 REMARK 3 9 2.7200 - 2.6200 1.00 2521 142 0.2411 0.2742 REMARK 3 10 2.6200 - 2.5300 1.00 2522 142 0.2378 0.2820 REMARK 3 11 2.5300 - 2.4500 1.00 2489 140 0.2424 0.2888 REMARK 3 12 2.4500 - 2.3800 1.00 2532 142 0.2571 0.2882 REMARK 3 13 2.3800 - 2.3200 1.00 2500 140 0.2758 0.3339 REMARK 3 14 2.3200 - 2.2600 1.00 2474 139 0.3002 0.3639 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.346 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.939 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 49.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 4550 REMARK 3 ANGLE : 1.192 6223 REMARK 3 CHIRALITY : 0.066 702 REMARK 3 PLANARITY : 0.009 783 REMARK 3 DIHEDRAL : 21.901 1738 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 16.7552 5.4628 4.3397 REMARK 3 T TENSOR REMARK 3 T11: 0.3643 T22: 0.3315 REMARK 3 T33: 0.3305 T12: -0.0093 REMARK 3 T13: -0.0202 T23: 0.0193 REMARK 3 L TENSOR REMARK 3 L11: 1.4069 L22: 2.8447 REMARK 3 L33: 1.6153 L12: -1.4261 REMARK 3 L13: -0.9953 L23: 1.6902 REMARK 3 S TENSOR REMARK 3 S11: -0.1517 S12: -0.1163 S13: -0.2716 REMARK 3 S21: 0.4214 S22: 0.0636 S23: 0.2689 REMARK 3 S31: 0.3813 S32: 0.0202 S33: 0.0823 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and (resid 9 through 21 or REMARK 3 (resid 22 and (name N or name CA or name REMARK 3 C or name O or name CB )) or resid 23 REMARK 3 through 35 or (resid 36 and (name N or REMARK 3 name CA or name C or name O or name CB )) REMARK 3 or resid 37 through 49 or (resid 57 REMARK 3 through 59 and (name N or name CA or name REMARK 3 C or name O or name CB )) or resid 60 REMARK 3 through 61 or (resid 62 and (name N or REMARK 3 name CA or name C or name O or name CB )) REMARK 3 or resid 63 or (resid 64 through 65 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB )) or resid 66 through 67 or REMARK 3 (resid 68 and (name N or name CA or name REMARK 3 C or name O or name CB )) or resid 69 REMARK 3 through 235 or (resid 236 and (name N or REMARK 3 name CA or name C or name O or name CB or REMARK 3 name CG )) or (resid 237 and (name N or REMARK 3 name CA or name C or name O or name CB )) REMARK 3 or resid 238 through 248 or (resid 249 REMARK 3 and (name N or name CA or name C or name REMARK 3 O or name CB )) or resid 250 through 253 REMARK 3 or (resid 254 and (name N or name CA or REMARK 3 name C or name O or name CB )) or resid REMARK 3 255 through 288 or (resid 289 and (name N REMARK 3 or name CA or name C or name O or name CB REMARK 3 )) or resid 290 through 307 or (resid 308 REMARK 3 and (name N or name CA or name C or name REMARK 3 O or name CB )) or resid 309 through 312 REMARK 3 or (resid 313 and (name N or name CA or REMARK 3 name C or name O or name CB or name CG or REMARK 3 name CD )) or (resid 314 through 316 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB )) or resid 401)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and (resid 9 through 49 or REMARK 3 resid 57 through 83 or (resid 84 and REMARK 3 (name N or name CA or name C or name O or REMARK 3 name CB )) or resid 85 through 155 or REMARK 3 (resid 156 and (name N or name CA or name REMARK 3 C or name O or name CB )) or resid 157 REMARK 3 through 168 or (resid 169 and (name N or REMARK 3 name CA or name C or name O or name CB )) REMARK 3 or resid 170 through 188 or (resid 189 REMARK 3 and (name N or name CA or name C or name REMARK 3 O or name CB )) or resid 190 through 198 REMARK 3 or resid 207 through 257 or (resid 258 REMARK 3 and (name N or name CA or name C or name REMARK 3 O or name CB )) or resid 259 through 263 REMARK 3 or (resid 264 and (name N or name CA or REMARK 3 name C or name O or name CB )) or resid REMARK 3 265 through 270 or (resid 271 and (name N REMARK 3 or name CA or name C or name O or name CB REMARK 3 )) or resid 272 through 284 or (resid 285 REMARK 3 and (name N or name CA or name C or name REMARK 3 O or name CB )) or resid 286 through 299 REMARK 3 or (resid 300 and (name N or name CA or REMARK 3 name C or name O or name CB )) or resid REMARK 3 301 through 401)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8X2O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 16-NOV-23. REMARK 100 THE DEPOSITION ID IS D_1300042505. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-DEC-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37633 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.260 REMARK 200 RESOLUTION RANGE LOW (A) : 54.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.02462 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.9700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.26 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.36250 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.190 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM MES PH7,12% PEG 400, 250MM REMARK 280 CACL2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.54000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.65500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.38500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.65500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.54000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.38500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 GLY A 3 REMARK 465 GLU A 4 REMARK 465 ALA A 5 REMARK 465 ILE A 6 REMARK 465 CYS A 7 REMARK 465 HIS A 50 REMARK 465 ILE A 51 REMARK 465 HIS A 52 REMARK 465 THR A 53 REMARK 465 PRO A 54 REMARK 465 LEU A 55 REMARK 465 LEU A 56 REMARK 465 MET A 172 REMARK 465 MET A 173 REMARK 465 SER A 174 REMARK 465 LEU A 175 REMARK 465 SER A 176 REMARK 465 GLN A 177 REMARK 465 SER A 178 REMARK 465 ARG A 179 REMARK 465 SER A 180 REMARK 465 SER A 181 REMARK 465 LYS A 182 REMARK 465 SER A 183 REMARK 465 ALA A 184 REMARK 465 PRO A 185 REMARK 465 GLU A 186 REMARK 465 GLY A 187 REMARK 465 GLU A 199 REMARK 465 PRO A 200 REMARK 465 GLY A 201 REMARK 465 GLN A 202 REMARK 465 LYS A 203 REMARK 465 SER A 204 REMARK 465 ARG A 205 REMARK 465 ALA A 206 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 GLY B 3 REMARK 465 GLU B 4 REMARK 465 ALA B 5 REMARK 465 ILE B 6 REMARK 465 CYS B 7 REMARK 465 SER B 8 REMARK 465 HIS B 50 REMARK 465 ILE B 51 REMARK 465 HIS B 52 REMARK 465 THR B 53 REMARK 465 PRO B 54 REMARK 465 MET B 172 REMARK 465 MET B 173 REMARK 465 SER B 174 REMARK 465 LEU B 175 REMARK 465 SER B 176 REMARK 465 GLN B 177 REMARK 465 SER B 178 REMARK 465 ARG B 179 REMARK 465 SER B 180 REMARK 465 SER B 181 REMARK 465 LYS B 182 REMARK 465 SER B 183 REMARK 465 ALA B 184 REMARK 465 PRO B 185 REMARK 465 GLU B 186 REMARK 465 GLY B 187 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 8 OG REMARK 470 LYS A 17 CE NZ REMARK 470 ASP A 20 CG OD1 OD2 REMARK 470 ARG A 22 NE CZ NH1 NH2 REMARK 470 ARG A 26 CG CD NE CZ NH1 NH2 REMARK 470 SER A 29 OG REMARK 470 LEU A 49 CG CD1 CD2 REMARK 470 SER A 58 OG REMARK 470 GLU A 59 CG CD OE1 OE2 REMARK 470 ARG A 60 CZ NH1 NH2 REMARK 470 LYS A 61 CG CD CE NZ REMARK 470 ARG A 65 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 72 CG CD CE NZ REMARK 470 SER A 76 OG REMARK 470 ILE A 84 CG1 CG2 CD1 REMARK 470 GLU A 89 CG CD OE1 OE2 REMARK 470 ARG A 109 CG CD NE CZ NH1 NH2 REMARK 470 THR A 111 OG1 CG2 REMARK 470 ASP A 115 CG OD1 OD2 REMARK 470 ASN A 156 CG OD1 ND2 REMARK 470 LYS A 169 CG CD CE NZ REMARK 470 THR A 189 OG1 CG2 REMARK 470 ILE A 208 CG1 CG2 CD1 REMARK 470 GLU A 230 CG CD OE1 OE2 REMARK 470 ASP A 231 CG OD1 OD2 REMARK 470 THR A 233 OG1 CG2 REMARK 470 SER A 243 OG REMARK 470 GLU A 252 CG CD OE1 OE2 REMARK 470 GLU A 253 CG CD OE1 OE2 REMARK 470 ASP A 258 CG OD1 OD2 REMARK 470 ARG A 264 CG CD NE CZ NH1 NH2 REMARK 470 SER A 271 OG REMARK 470 LYS A 285 CG CD CE NZ REMARK 470 GLU A 298 CG CD OE1 OE2 REMARK 470 ILE A 300 CG1 CG2 CD1 REMARK 470 LEU A 314 CG CD1 CD2 REMARK 470 LYS B 17 CE NZ REMARK 470 ASP B 20 CG OD1 OD2 REMARK 470 ARG B 22 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 26 CG CD NE CZ NH1 NH2 REMARK 470 SER B 29 OG REMARK 470 ARG B 36 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 49 CG CD1 CD2 REMARK 470 LEU B 55 CG CD1 CD2 REMARK 470 LEU B 56 CG CD1 CD2 REMARK 470 ASP B 57 CG OD1 OD2 REMARK 470 SER B 58 OG REMARK 470 GLU B 59 CG CD OE1 OE2 REMARK 470 ARG B 60 CZ NH1 NH2 REMARK 470 LYS B 61 CG CD CE NZ REMARK 470 ASP B 62 CG OD1 OD2 REMARK 470 LEU B 64 CG CD1 CD2 REMARK 470 ARG B 65 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 68 CG CD OE1 OE2 REMARK 470 LYS B 72 CG CD CE NZ REMARK 470 SER B 76 OG REMARK 470 GLU B 89 CG CD OE1 OE2 REMARK 470 ARG B 109 CG CD NE CZ NH1 NH2 REMARK 470 THR B 111 OG1 CG2 REMARK 470 ASP B 115 CG OD1 OD2 REMARK 470 GLN B 202 CG CD OE1 NE2 REMARK 470 LYS B 203 CG CD CE NZ REMARK 470 SER B 204 OG REMARK 470 ARG B 205 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 208 CG1 CG2 CD1 REMARK 470 GLU B 230 CG CD OE1 OE2 REMARK 470 ASP B 231 CG OD1 OD2 REMARK 470 THR B 233 OG1 CG2 REMARK 470 LEU B 236 CD1 CD2 REMARK 470 GLN B 237 CG CD OE1 NE2 REMARK 470 SER B 243 OG REMARK 470 VAL B 249 CG1 CG2 REMARK 470 GLU B 252 CG CD OE1 OE2 REMARK 470 GLU B 253 CG CD OE1 OE2 REMARK 470 SER B 254 OG REMARK 470 GLU B 289 CG CD OE1 OE2 REMARK 470 GLU B 298 CG CD OE1 OE2 REMARK 470 GLN B 308 CG CD OE1 NE2 REMARK 470 LYS B 313 CE NZ REMARK 470 LEU B 314 CG CD1 CD2 REMARK 470 GLN B 315 CG CD OE1 NE2 REMARK 470 SER B 316 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU B 105 O HOH B 501 2.02 REMARK 500 OE1 GLU B 279 O HOH B 502 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 24 CA - CB - CG ANGL. DEV. = 24.3 DEGREES REMARK 500 LEU B 24 CB - CG - CD2 ANGL. DEV. = 12.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 139 89.26 52.45 REMARK 500 ASP A 146 32.91 -146.56 REMARK 500 ASP A 164 83.58 59.51 REMARK 500 LEU B 56 -171.13 -173.99 REMARK 500 ASP B 57 -41.50 -140.61 REMARK 500 ASP B 146 32.23 -142.55 REMARK 500 ASP B 164 85.82 57.85 REMARK 500 ALA B 206 56.30 -119.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 GLU B 279 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 570 DISTANCE = 6.21 ANGSTROMS DBREF 8X2O A 1 316 UNP O43353 RIPK2_HUMAN 1 316 DBREF 8X2O B 1 316 UNP O43353 RIPK2_HUMAN 1 316 SEQRES 1 A 316 MET ASN GLY GLU ALA ILE CYS SER ALA LEU PRO THR ILE SEQRES 2 A 316 PRO TYR HIS LYS LEU ALA ASP LEU ARG TYR LEU SER ARG SEQRES 3 A 316 GLY ALA SER GLY THR VAL SER SER ALA ARG HIS ALA ASP SEQRES 4 A 316 TRP ARG VAL GLN VAL ALA VAL LYS HIS LEU HIS ILE HIS SEQRES 5 A 316 THR PRO LEU LEU ASP SER GLU ARG LYS ASP VAL LEU ARG SEQRES 6 A 316 GLU ALA GLU ILE LEU HIS LYS ALA ARG PHE SER TYR ILE SEQRES 7 A 316 LEU PRO ILE LEU GLY ILE CYS ASN GLU PRO GLU PHE LEU SEQRES 8 A 316 GLY ILE VAL THR GLU TYR MET PRO ASN GLY SER LEU ASN SEQRES 9 A 316 GLU LEU LEU HIS ARG LYS THR GLU TYR PRO ASP VAL ALA SEQRES 10 A 316 TRP PRO LEU ARG PHE ARG ILE LEU HIS GLU ILE ALA LEU SEQRES 11 A 316 GLY VAL ASN TYR LEU HIS ASN MET THR PRO PRO LEU LEU SEQRES 12 A 316 HIS HIS ASP LEU LYS THR GLN ASN ILE LEU LEU ASP ASN SEQRES 13 A 316 GLU PHE HIS VAL LYS ILE ALA ASP PHE GLY LEU SER LYS SEQRES 14 A 316 TRP ARG MET MET SER LEU SER GLN SER ARG SER SER LYS SEQRES 15 A 316 SER ALA PRO GLU GLY GLY THR ILE ILE TYR MET PRO PRO SEQRES 16 A 316 GLU ASN TYR GLU PRO GLY GLN LYS SER ARG ALA SER ILE SEQRES 17 A 316 LYS HIS ASP ILE TYR SER TYR ALA VAL ILE THR TRP GLU SEQRES 18 A 316 VAL LEU SER ARG LYS GLN PRO PHE GLU ASP VAL THR ASN SEQRES 19 A 316 PRO LEU GLN ILE MET TYR SER VAL SER GLN GLY HIS ARG SEQRES 20 A 316 PRO VAL ILE ASN GLU GLU SER LEU PRO TYR ASP ILE PRO SEQRES 21 A 316 HIS ARG ALA ARG MET ILE SER LEU ILE GLU SER GLY TRP SEQRES 22 A 316 ALA GLN ASN PRO ASP GLU ARG PRO SER PHE LEU LYS CYS SEQRES 23 A 316 LEU ILE GLU LEU GLU PRO VAL LEU ARG THR PHE GLU GLU SEQRES 24 A 316 ILE THR PHE LEU GLU ALA VAL ILE GLN LEU LYS LYS THR SEQRES 25 A 316 LYS LEU GLN SER SEQRES 1 B 316 MET ASN GLY GLU ALA ILE CYS SER ALA LEU PRO THR ILE SEQRES 2 B 316 PRO TYR HIS LYS LEU ALA ASP LEU ARG TYR LEU SER ARG SEQRES 3 B 316 GLY ALA SER GLY THR VAL SER SER ALA ARG HIS ALA ASP SEQRES 4 B 316 TRP ARG VAL GLN VAL ALA VAL LYS HIS LEU HIS ILE HIS SEQRES 5 B 316 THR PRO LEU LEU ASP SER GLU ARG LYS ASP VAL LEU ARG SEQRES 6 B 316 GLU ALA GLU ILE LEU HIS LYS ALA ARG PHE SER TYR ILE SEQRES 7 B 316 LEU PRO ILE LEU GLY ILE CYS ASN GLU PRO GLU PHE LEU SEQRES 8 B 316 GLY ILE VAL THR GLU TYR MET PRO ASN GLY SER LEU ASN SEQRES 9 B 316 GLU LEU LEU HIS ARG LYS THR GLU TYR PRO ASP VAL ALA SEQRES 10 B 316 TRP PRO LEU ARG PHE ARG ILE LEU HIS GLU ILE ALA LEU SEQRES 11 B 316 GLY VAL ASN TYR LEU HIS ASN MET THR PRO PRO LEU LEU SEQRES 12 B 316 HIS HIS ASP LEU LYS THR GLN ASN ILE LEU LEU ASP ASN SEQRES 13 B 316 GLU PHE HIS VAL LYS ILE ALA ASP PHE GLY LEU SER LYS SEQRES 14 B 316 TRP ARG MET MET SER LEU SER GLN SER ARG SER SER LYS SEQRES 15 B 316 SER ALA PRO GLU GLY GLY THR ILE ILE TYR MET PRO PRO SEQRES 16 B 316 GLU ASN TYR GLU PRO GLY GLN LYS SER ARG ALA SER ILE SEQRES 17 B 316 LYS HIS ASP ILE TYR SER TYR ALA VAL ILE THR TRP GLU SEQRES 18 B 316 VAL LEU SER ARG LYS GLN PRO PHE GLU ASP VAL THR ASN SEQRES 19 B 316 PRO LEU GLN ILE MET TYR SER VAL SER GLN GLY HIS ARG SEQRES 20 B 316 PRO VAL ILE ASN GLU GLU SER LEU PRO TYR ASP ILE PRO SEQRES 21 B 316 HIS ARG ALA ARG MET ILE SER LEU ILE GLU SER GLY TRP SEQRES 22 B 316 ALA GLN ASN PRO ASP GLU ARG PRO SER PHE LEU LYS CYS SEQRES 23 B 316 LEU ILE GLU LEU GLU PRO VAL LEU ARG THR PHE GLU GLU SEQRES 24 B 316 ILE THR PHE LEU GLU ALA VAL ILE GLN LEU LYS LYS THR SEQRES 25 B 316 LYS LEU GLN SER HET 6IL A 401 52 HET 6IL B 401 52 HETNAM 6IL ~{N}-[(1~{R})-4-[4-[(6-FLUORANYL-1,3-BENZOTHIAZOL-5- HETNAM 2 6IL YL)AMINO]THIENO[2,3-D]PYRIMIDIN-6-YL]CYCLOHEX-3-EN-1- HETNAM 3 6IL YL]CYCLOPROPANECARBOXAMIDE FORMUL 3 6IL 2(C23 H20 F N5 O S2) FORMUL 5 HOH *121(H2 O) HELIX 1 AA1 PRO A 14 HIS A 16 5 3 HELIX 2 AA2 SER A 58 ALA A 73 1 16 HELIX 3 AA3 SER A 102 ARG A 109 1 8 HELIX 4 AA4 ALA A 117 ASN A 137 1 21 HELIX 5 AA5 LYS A 148 GLN A 150 5 3 HELIX 6 AA6 PRO A 194 TYR A 198 5 5 HELIX 7 AA7 LYS A 209 ARG A 225 1 17 HELIX 8 AA8 ASN A 234 GLN A 244 1 11 HELIX 9 AA9 HIS A 261 TRP A 273 1 13 HELIX 10 AB1 ASN A 276 ARG A 280 5 5 HELIX 11 AB2 SER A 282 ARG A 295 1 14 HELIX 12 AB3 GLU A 298 SER A 316 1 19 HELIX 13 AB4 PRO B 14 HIS B 16 5 3 HELIX 14 AB5 ASP B 57 ALA B 73 1 17 HELIX 15 AB6 SER B 102 ARG B 109 1 8 HELIX 16 AB7 ALA B 117 ASN B 137 1 21 HELIX 17 AB8 LYS B 148 GLN B 150 5 3 HELIX 18 AB9 PRO B 194 TYR B 198 5 5 HELIX 19 AC1 LYS B 209 ARG B 225 1 17 HELIX 20 AC2 ASN B 234 GLN B 244 1 11 HELIX 21 AC3 HIS B 261 TRP B 273 1 13 HELIX 22 AC4 ASN B 276 ARG B 280 5 5 HELIX 23 AC5 SER B 282 ARG B 295 1 14 HELIX 24 AC6 GLU B 298 SER B 316 1 19 SHEET 1 AA1 5 LEU A 18 ARG A 26 0 SHEET 2 AA1 5 THR A 31 HIS A 37 -1 O VAL A 32 N SER A 25 SHEET 3 AA1 5 GLN A 43 HIS A 48 -1 O VAL A 44 N ALA A 35 SHEET 4 AA1 5 PHE A 90 GLU A 96 -1 O THR A 95 N ALA A 45 SHEET 5 AA1 5 ILE A 81 GLU A 87 -1 N CYS A 85 O GLY A 92 SHEET 1 AA2 2 LEU A 142 LEU A 143 0 SHEET 2 AA2 2 LYS A 169 TRP A 170 -1 O LYS A 169 N LEU A 143 SHEET 1 AA3 2 ILE A 152 LEU A 154 0 SHEET 2 AA3 2 VAL A 160 ILE A 162 -1 O LYS A 161 N LEU A 153 SHEET 1 AA4 5 LEU B 18 ARG B 26 0 SHEET 2 AA4 5 THR B 31 HIS B 37 -1 O SER B 34 N ARG B 22 SHEET 3 AA4 5 GLN B 43 HIS B 48 -1 O VAL B 44 N ALA B 35 SHEET 4 AA4 5 PHE B 90 GLU B 96 -1 O THR B 95 N ALA B 45 SHEET 5 AA4 5 ILE B 81 GLU B 87 -1 N LEU B 82 O VAL B 94 SHEET 1 AA5 2 LEU B 142 LEU B 143 0 SHEET 2 AA5 2 LYS B 169 TRP B 170 -1 O LYS B 169 N LEU B 143 SHEET 1 AA6 2 ILE B 152 LEU B 154 0 SHEET 2 AA6 2 VAL B 160 ILE B 162 -1 O LYS B 161 N LEU B 153 CISPEP 1 THR A 139 PRO A 140 0 -8.92 CISPEP 2 THR B 139 PRO B 140 0 -5.26 CRYST1 61.080 102.770 125.310 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016372 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009730 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007980 0.00000 MTRIX1 1 -0.284475 0.886555 -0.364820 18.68649 1 MTRIX2 1 0.884509 0.095947 -0.456549 -8.57156 1 MTRIX3 1 -0.369753 -0.452564 -0.811461 16.33369 1