HEADER TRANSFERASE 12-NOV-23 8X35 TITLE NERYL DIPHOSPHATE SYNTHASE FROM SOLANUM LYCOPERSICUM COMPLEXED WITH TITLE 2 DMSAPP, IPP, AND MAGNESIUM ION (FORM A) COMPND MOL_ID: 1; COMPND 2 MOLECULE: NERYL DIPHOSPHATE SYNTHASE 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DIMETHYLALLYLCISTRANSFERASE CPT1, CHLOROPLASTIC, CIS- COMPND 5 PRENYLTRANSFERASE 1,SLCPT1; COMPND 6 EC: 2.5.1.28; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SOLANUM LYCOPERSICUM; SOURCE 3 ORGANISM_COMMON: TOMATO; SOURCE 4 ORGANISM_TAXID: 4081; SOURCE 5 GENE: CPT1, NDPS1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS CIS-PRENYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.IMAIZUMI,H.MATSUURA,T.YANAI,K.TAKESHITA,S.MISAWA,H.YAMAGUCHI, AUTHOR 2 N.SAKAI,Y.MIYAGI-INOUE,M.SUENAGA-HIROMORI,K.KATAOKA,T.NAKAYAMA, AUTHOR 3 M.YAMAMOTO,S.TAKAHASHI,S.YAMASHITA REVDAT 4 23-OCT-24 8X35 1 REMARK REVDAT 3 24-APR-24 8X35 1 JRNL REVDAT 2 17-APR-24 8X35 1 JRNL REVDAT 1 07-FEB-24 8X35 0 JRNL AUTH R.IMAIZUMI,H.MATSUURA,T.YANAI,K.TAKESHITA,S.MISAWA, JRNL AUTH 2 H.YAMAGUCHI,N.SAKAI,Y.MIYAGI-INOUE,M.SUENAGA-HIROMORI, JRNL AUTH 3 T.WAKI,K.KATAOKA,T.NAKAYAMA,M.YAMAMOTO,S.TAKAHASHI, JRNL AUTH 4 S.YAMASHITA JRNL TITL STRUCTURAL-FUNCTIONAL CORRELATIONS BETWEEN UNIQUE N-TERMINAL JRNL TITL 2 REGION AND C-TERMINAL CONSERVED MOTIF IN SHORT-CHAIN JRNL TITL 3 CIS-PRENYLTRANSFERASE FROM TOMATO. JRNL REF CHEMBIOCHEM V. 25 00796 2024 JRNL REFN ESSN 1439-7633 JRNL PMID 38225831 JRNL DOI 10.1002/CBIC.202300796 REMARK 2 REMARK 2 RESOLUTION. 1.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0411 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.15 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 44740 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2237 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.92 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.97 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3175 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.6200 REMARK 3 BIN FREE R VALUE SET COUNT : 167 REMARK 3 BIN FREE R VALUE : 0.5580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3778 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 59 REMARK 3 SOLVENT ATOMS : 99 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.08400 REMARK 3 B22 (A**2) : 5.32100 REMARK 3 B33 (A**2) : -3.23600 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.05600 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.164 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.153 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3912 ; 0.011 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 3734 ; 0.002 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5265 ; 1.566 ; 1.649 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8611 ; 0.735 ; 1.574 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 463 ; 5.725 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 21 ; 5.549 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 730 ;18.347 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 576 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4438 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 890 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 744 ; 0.220 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 27 ; 0.267 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1862 ; 0.184 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 109 ; 0.156 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.043 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1867 ; 2.846 ; 4.932 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1867 ; 2.846 ; 4.931 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2325 ; 3.890 ; 8.822 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2326 ; 3.892 ; 8.824 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2045 ; 4.086 ; 5.287 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2046 ; 4.085 ; 5.286 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2940 ; 5.744 ; 9.592 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2941 ; 5.743 ; 9.591 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8X35 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-NOV-23. REMARK 100 THE DEPOSITION ID IS D_1300041961. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-OCT-21 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL32XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44740 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.920 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.070 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7VPC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: DL-MALIC ACID, PEG3350, PH 7.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 49.15500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.61500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 49.15500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 24.61500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 THR A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 LEU A 4 REMARK 465 VAL A 5 REMARK 465 LEU A 6 REMARK 465 GLN A 7 REMARK 465 CYS A 8 REMARK 465 TRP A 9 REMARK 465 LYS A 10 REMARK 465 LEU A 11 REMARK 465 SER A 12 REMARK 465 SER A 13 REMARK 465 PRO A 14 REMARK 465 SER A 15 REMARK 465 LEU A 16 REMARK 465 ILE A 17 REMARK 465 LEU A 18 REMARK 465 GLN A 19 REMARK 465 GLN A 20 REMARK 465 ASN A 21 REMARK 465 THR A 22 REMARK 465 SER A 23 REMARK 465 ILE A 24 REMARK 465 SER A 25 REMARK 465 MET A 26 REMARK 465 GLY A 27 REMARK 465 ALA A 28 REMARK 465 PHE A 29 REMARK 465 LYS A 30 REMARK 465 GLY A 31 REMARK 465 ILE A 32 REMARK 465 HIS A 33 REMARK 465 LYS A 34 REMARK 465 LEU A 35 REMARK 465 GLN A 36 REMARK 465 ILE A 37 REMARK 465 PRO A 38 REMARK 465 ASN A 39 REMARK 465 SER A 40 REMARK 465 PRO A 41 REMARK 465 LEU A 42 REMARK 465 THR A 43 REMARK 465 VAL A 44 REMARK 465 SER A 45 REMARK 465 ALA A 46 REMARK 465 ARG A 47 REMARK 465 GLY A 48 REMARK 465 LEU A 49 REMARK 465 ASN A 50 REMARK 465 LYS A 51 REMARK 465 ILE A 52 REMARK 465 LEU A 58 REMARK 465 GLN A 59 REMARK 465 THR A 60 REMARK 465 GLU A 61 REMARK 465 LYS A 62 REMARK 465 LEU A 63 REMARK 465 TYR A 65 REMARK 465 GLU A 66 REMARK 465 ASP A 67 REMARK 465 ASN A 68 REMARK 465 ASP A 69 REMARK 465 ASN A 70 REMARK 465 ASP A 71 REMARK 465 LEU A 72 REMARK 465 ASP A 73 REMARK 465 GLU A 74 REMARK 465 GLU A 75 REMARK 465 GLY A 299 REMARK 465 GLY A 300 REMARK 465 HIS A 301 REMARK 465 THR A 302 REMARK 465 TYR A 303 REMARK 465 GLY B -1 REMARK 465 THR B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 SER B 3 REMARK 465 LEU B 4 REMARK 465 VAL B 5 REMARK 465 LEU B 6 REMARK 465 GLN B 7 REMARK 465 CYS B 8 REMARK 465 TRP B 9 REMARK 465 LYS B 10 REMARK 465 LEU B 11 REMARK 465 SER B 12 REMARK 465 SER B 13 REMARK 465 PRO B 14 REMARK 465 SER B 15 REMARK 465 LEU B 16 REMARK 465 ILE B 17 REMARK 465 LEU B 18 REMARK 465 GLN B 19 REMARK 465 GLN B 20 REMARK 465 ASN B 21 REMARK 465 THR B 22 REMARK 465 SER B 23 REMARK 465 ILE B 24 REMARK 465 SER B 25 REMARK 465 MET B 26 REMARK 465 GLY B 27 REMARK 465 ALA B 28 REMARK 465 PHE B 29 REMARK 465 LYS B 30 REMARK 465 GLY B 31 REMARK 465 ILE B 32 REMARK 465 HIS B 33 REMARK 465 LYS B 34 REMARK 465 LEU B 35 REMARK 465 GLN B 36 REMARK 465 ILE B 37 REMARK 465 PRO B 38 REMARK 465 ASN B 39 REMARK 465 SER B 40 REMARK 465 PRO B 41 REMARK 465 LEU B 42 REMARK 465 THR B 43 REMARK 465 VAL B 44 REMARK 465 SER B 45 REMARK 465 ALA B 46 REMARK 465 ARG B 47 REMARK 465 GLY B 48 REMARK 465 LEU B 49 REMARK 465 ASN B 50 REMARK 465 LYS B 51 REMARK 465 ILE B 52 REMARK 465 THR B 60 REMARK 465 GLU B 61 REMARK 465 ASP B 67 REMARK 465 ASN B 68 REMARK 465 ASP B 69 REMARK 465 ASN B 70 REMARK 465 ASP B 71 REMARK 465 LEU B 72 REMARK 465 ASP B 73 REMARK 465 GLU B 74 REMARK 465 GLU B 75 REMARK 465 THR B 302 REMARK 465 TYR B 303 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU B 145 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 55 116.25 -165.00 REMARK 500 PHE A 259 -134.16 -80.31 REMARK 500 SER B 55 118.44 -161.29 REMARK 500 CYS B 64 52.58 -98.92 REMARK 500 PHE B 130 111.69 -162.64 REMARK 500 PHE B 259 -135.10 -84.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 86 OD1 REMARK 620 2 IPE A 402 O2A 99.8 REMARK 620 3 DST A 403 O8 103.2 93.8 REMARK 620 4 DST A 403 O5 83.1 176.6 87.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 86 OD1 REMARK 620 2 DPO B 402 O5 87.4 REMARK 620 3 DPO B 403 O1 73.1 160.4 REMARK 620 4 DPO B 403 O7 77.3 97.3 80.1 REMARK 620 N 1 2 3 DBREF 8X35 A 1 303 UNP C1K5M2 CPT1_SOLLC 1 303 DBREF 8X35 B 1 303 UNP C1K5M2 CPT1_SOLLC 1 303 SEQADV 8X35 GLY A -1 UNP C1K5M2 EXPRESSION TAG SEQADV 8X35 THR A 0 UNP C1K5M2 EXPRESSION TAG SEQADV 8X35 GLY B -1 UNP C1K5M2 EXPRESSION TAG SEQADV 8X35 THR B 0 UNP C1K5M2 EXPRESSION TAG SEQRES 1 A 305 GLY THR MET SER SER LEU VAL LEU GLN CYS TRP LYS LEU SEQRES 2 A 305 SER SER PRO SER LEU ILE LEU GLN GLN ASN THR SER ILE SEQRES 3 A 305 SER MET GLY ALA PHE LYS GLY ILE HIS LYS LEU GLN ILE SEQRES 4 A 305 PRO ASN SER PRO LEU THR VAL SER ALA ARG GLY LEU ASN SEQRES 5 A 305 LYS ILE SER CYS SER LEU ASN LEU GLN THR GLU LYS LEU SEQRES 6 A 305 CYS TYR GLU ASP ASN ASP ASN ASP LEU ASP GLU GLU LEU SEQRES 7 A 305 MET PRO LYS HIS ILE ALA LEU ILE MET ASP GLY ASN ARG SEQRES 8 A 305 ARG TRP ALA LYS ASP LYS GLY LEU GLU VAL TYR GLU GLY SEQRES 9 A 305 HIS LYS HIS ILE ILE PRO LYS LEU LYS GLU ILE CYS ASP SEQRES 10 A 305 ILE SER SER LYS LEU GLY ILE GLN ILE ILE THR ALA PHE SEQRES 11 A 305 ALA PHE SER THR GLU ASN TRP LYS ARG SER LYS GLU GLU SEQRES 12 A 305 VAL ASP PHE LEU LEU GLN MET PHE GLU GLU ILE TYR ASP SEQRES 13 A 305 GLU PHE SER ARG SER GLY VAL ARG VAL SER ILE ILE GLY SEQRES 14 A 305 CYS LYS SER ASP LEU PRO MET THR LEU GLN LYS CYS ILE SEQRES 15 A 305 ALA LEU THR GLU GLU THR THR LYS GLY ASN LYS GLY LEU SEQRES 16 A 305 HIS LEU VAL ILE ALA LEU ASN TYR GLY GLY TYR TYR ASP SEQRES 17 A 305 ILE LEU GLN ALA THR LYS SER ILE VAL ASN LYS ALA MET SEQRES 18 A 305 ASN GLY LEU LEU ASP VAL GLU ASP ILE ASN LYS ASN LEU SEQRES 19 A 305 PHE ASP GLN GLU LEU GLU SER LYS CYS PRO ASN PRO ASP SEQRES 20 A 305 LEU LEU ILE ARG THR GLY GLY GLU GLN ARG VAL SER ASN SEQRES 21 A 305 PHE LEU LEU TRP GLN LEU ALA TYR THR GLU PHE TYR PHE SEQRES 22 A 305 THR ASN THR LEU PHE PRO ASP PHE GLY GLU GLU ASP LEU SEQRES 23 A 305 LYS GLU ALA ILE MET ASN PHE GLN GLN ARG HIS ARG ARG SEQRES 24 A 305 PHE GLY GLY HIS THR TYR SEQRES 1 B 305 GLY THR MET SER SER LEU VAL LEU GLN CYS TRP LYS LEU SEQRES 2 B 305 SER SER PRO SER LEU ILE LEU GLN GLN ASN THR SER ILE SEQRES 3 B 305 SER MET GLY ALA PHE LYS GLY ILE HIS LYS LEU GLN ILE SEQRES 4 B 305 PRO ASN SER PRO LEU THR VAL SER ALA ARG GLY LEU ASN SEQRES 5 B 305 LYS ILE SER CYS SER LEU ASN LEU GLN THR GLU LYS LEU SEQRES 6 B 305 CYS TYR GLU ASP ASN ASP ASN ASP LEU ASP GLU GLU LEU SEQRES 7 B 305 MET PRO LYS HIS ILE ALA LEU ILE MET ASP GLY ASN ARG SEQRES 8 B 305 ARG TRP ALA LYS ASP LYS GLY LEU GLU VAL TYR GLU GLY SEQRES 9 B 305 HIS LYS HIS ILE ILE PRO LYS LEU LYS GLU ILE CYS ASP SEQRES 10 B 305 ILE SER SER LYS LEU GLY ILE GLN ILE ILE THR ALA PHE SEQRES 11 B 305 ALA PHE SER THR GLU ASN TRP LYS ARG SER LYS GLU GLU SEQRES 12 B 305 VAL ASP PHE LEU LEU GLN MET PHE GLU GLU ILE TYR ASP SEQRES 13 B 305 GLU PHE SER ARG SER GLY VAL ARG VAL SER ILE ILE GLY SEQRES 14 B 305 CYS LYS SER ASP LEU PRO MET THR LEU GLN LYS CYS ILE SEQRES 15 B 305 ALA LEU THR GLU GLU THR THR LYS GLY ASN LYS GLY LEU SEQRES 16 B 305 HIS LEU VAL ILE ALA LEU ASN TYR GLY GLY TYR TYR ASP SEQRES 17 B 305 ILE LEU GLN ALA THR LYS SER ILE VAL ASN LYS ALA MET SEQRES 18 B 305 ASN GLY LEU LEU ASP VAL GLU ASP ILE ASN LYS ASN LEU SEQRES 19 B 305 PHE ASP GLN GLU LEU GLU SER LYS CYS PRO ASN PRO ASP SEQRES 20 B 305 LEU LEU ILE ARG THR GLY GLY GLU GLN ARG VAL SER ASN SEQRES 21 B 305 PHE LEU LEU TRP GLN LEU ALA TYR THR GLU PHE TYR PHE SEQRES 22 B 305 THR ASN THR LEU PHE PRO ASP PHE GLY GLU GLU ASP LEU SEQRES 23 B 305 LYS GLU ALA ILE MET ASN PHE GLN GLN ARG HIS ARG ARG SEQRES 24 B 305 PHE GLY GLY HIS THR TYR HET MG A 401 1 HET IPE A 402 14 HET DST A 403 14 HET PEG A 404 7 HET EDO A 405 4 HET MG B 401 1 HET DPO B 402 9 HET DPO B 403 9 HETNAM MG MAGNESIUM ION HETNAM IPE 3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE HETNAM DST DIMETHYLALLYL S-THIOLODIPHOSPHATE HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM EDO 1,2-ETHANEDIOL HETNAM DPO DIPHOSPHATE HETSYN IPE ISOPENTENYL PYROPHOSPHATE HETSYN DST DMASPP; DMAPP; DMADP; DIMETHYLALLYL PYROPHOSPHATE; HETSYN 2 DST DIMETHYLALLYL DIPHOSPHATE; ISOPRENYL PYROPHOSPHATE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 MG 2(MG 2+) FORMUL 4 IPE C5 H12 O7 P2 FORMUL 5 DST C5 H12 O6 P2 S FORMUL 6 PEG C4 H10 O3 FORMUL 7 EDO C2 H6 O2 FORMUL 9 DPO 2(O7 P2 4-) FORMUL 11 HOH *99(H2 O) HELIX 1 AA1 GLY A 87 LYS A 95 1 9 HELIX 2 AA2 GLU A 98 LYS A 104 1 7 HELIX 3 AA3 HIS A 105 GLY A 121 1 17 HELIX 4 AA4 GLU A 133 ARG A 137 5 5 HELIX 5 AA5 SER A 138 PHE A 149 1 12 HELIX 6 AA6 GLU A 150 SER A 157 1 8 HELIX 7 AA7 CYS A 168 LEU A 172 5 5 HELIX 8 AA8 PRO A 173 LYS A 188 1 16 HELIX 9 AA9 GLY A 202 ASN A 220 1 19 HELIX 10 AB1 ASP A 224 ILE A 228 5 5 HELIX 11 AB2 ASN A 229 LEU A 237 1 9 HELIX 12 AB3 LEU A 261 ALA A 265 5 5 HELIX 13 AB4 LEU A 275 PHE A 279 5 5 HELIX 14 AB5 GLY A 280 PHE A 298 1 19 HELIX 15 AB6 GLY B 87 LYS B 95 1 9 HELIX 16 AB7 GLY B 102 LYS B 104 5 3 HELIX 17 AB8 HIS B 105 GLY B 121 1 17 HELIX 18 AB9 GLU B 133 ARG B 137 5 5 HELIX 19 AC1 SER B 138 PHE B 149 1 12 HELIX 20 AC2 GLU B 151 SER B 157 1 7 HELIX 21 AC3 CYS B 168 LEU B 172 5 5 HELIX 22 AC4 PRO B 173 LYS B 188 1 16 HELIX 23 AC5 GLY B 202 ASN B 220 1 19 HELIX 24 AC6 ASP B 224 ILE B 228 5 5 HELIX 25 AC7 ASN B 229 LEU B 237 1 9 HELIX 26 AC8 LEU B 261 ALA B 265 5 5 HELIX 27 AC9 LEU B 275 PHE B 279 5 5 HELIX 28 AD1 GLY B 280 ARG B 294 1 15 SHEET 1 AA1 6 ARG A 162 ILE A 166 0 SHEET 2 AA1 6 HIS A 194 TYR A 201 1 O ILE A 197 N SER A 164 SHEET 3 AA1 6 ILE A 124 SER A 131 1 N ILE A 125 O VAL A 196 SHEET 4 AA1 6 HIS A 80 ILE A 84 1 N LEU A 83 O THR A 126 SHEET 5 AA1 6 LEU A 246 ARG A 249 1 O ILE A 248 N ALA A 82 SHEET 6 AA1 6 GLU A 268 PHE A 271 1 O GLU A 268 N LEU A 247 SHEET 1 AA2 6 ARG B 162 ILE B 166 0 SHEET 2 AA2 6 HIS B 194 TYR B 201 1 O LEU B 195 N ARG B 162 SHEET 3 AA2 6 ILE B 124 SER B 131 1 N ILE B 125 O VAL B 196 SHEET 4 AA2 6 HIS B 80 ILE B 84 1 N LEU B 83 O PHE B 128 SHEET 5 AA2 6 LEU B 246 ARG B 249 1 O ILE B 248 N ILE B 84 SHEET 6 AA2 6 GLU B 268 PHE B 271 1 O TYR B 270 N LEU B 247 SSBOND 1 CYS A 54 CYS B 168 1555 1555 2.05 SSBOND 2 CYS A 64 CYS A 241 1555 1555 2.04 SSBOND 3 CYS A 168 CYS B 54 1555 1555 2.04 SSBOND 4 CYS B 64 CYS B 241 1555 1555 2.04 LINK OD1 ASP A 86 MG MG A 401 1555 1555 2.17 LINK MG MG A 401 O2A IPE A 402 1555 1555 1.98 LINK MG MG A 401 O8 DST A 403 1555 1555 2.27 LINK MG MG A 401 O5 DST A 403 1555 1555 2.17 LINK OD1 ASP B 86 MG MG B 401 1555 1555 2.52 LINK MG MG B 401 O5 DPO B 402 1555 1555 2.29 LINK MG MG B 401 O1 DPO B 403 1555 1555 2.26 LINK MG MG B 401 O7 DPO B 403 1555 1555 2.14 CISPEP 1 CYS A 241 PRO A 242 0 -1.46 CISPEP 2 CYS B 241 PRO B 242 0 -2.20 CRYST1 98.310 49.230 121.390 90.00 91.07 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010172 0.000000 0.000189 0.00000 SCALE2 0.000000 0.020313 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008239 0.00000