HEADER PROTEIN BINDING 12-NOV-23 8X3A TITLE SOLUTION NMR STRUCTURE OF CELLULOSOMAL DOUBLE-DOCKERIN MODULE OF TITLE 2 CLO1313_0689 FROM CLOSTRIDIUM THERMOCELLUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE PROTEASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACETIVIBRIO THERMOCELLUS DSM 1313; SOURCE 3 ORGANISM_TAXID: 637887; SOURCE 4 GENE: CPRA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS CALCIUM-BINDING PROTEIN, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.CHEN,Y.FENG REVDAT 2 15-MAY-24 8X3A 1 REMARK REVDAT 1 03-APR-24 8X3A 0 JRNL AUTH C.CHEN,H.YANG,S.DONG,C.YOU,S.MORAIS,E.A.BAYER,Y.J.LIU, JRNL AUTH 2 J.XUAN,Q.CUI,I.MIZRAHI,Y.FENG JRNL TITL A CELLULOSOMAL DOUBLE-DOCKERIN MODULE FROM CLOSTRIDIUM JRNL TITL 2 THERMOCELLUM SHOWS DISTINCT STRUCTURAL AND COHESIN-BINDING JRNL TITL 3 FEATURES. JRNL REF PROTEIN SCI. V. 33 E4937 2024 JRNL REFN ESSN 1469-896X JRNL PMID 38501488 JRNL DOI 10.1002/PRO.4937 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8X3A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-NOV-23. REMARK 100 THE DEPOSITION ID IS D_1300042540. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 4.9 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.6 MM [U-13C; U-15N] DDOC_0689, REMARK 210 50 MM SODIUM ACETATE, 50 MM REMARK 210 POTASSIUM CHLORIDE, 10 MM CACL2, REMARK 210 3 MG/L DTT, 0.02 % W/V DSS, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEWJ, CYANA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 HIS A 152 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 28 94.02 -170.19 REMARK 500 1 SER A 29 156.90 174.51 REMARK 500 1 ASP A 67 20.24 -78.56 REMARK 500 1 HIS A 147 -68.52 71.60 REMARK 500 1 HIS A 149 71.03 76.52 REMARK 500 2 ASN A 28 0.73 -162.51 REMARK 500 2 SER A 66 -169.86 -164.63 REMARK 500 2 HIS A 148 25.40 -141.97 REMARK 500 2 HIS A 149 -66.94 73.05 REMARK 500 3 ASN A 28 94.35 178.90 REMARK 500 3 SER A 29 111.23 -163.92 REMARK 500 3 THR A 65 29.92 -158.85 REMARK 500 3 ASP A 67 30.45 -86.36 REMARK 500 3 ASN A 81 63.02 63.76 REMARK 500 3 ASN A 142 135.23 179.03 REMARK 500 3 HIS A 147 124.29 73.91 REMARK 500 3 HIS A 148 -150.03 60.06 REMARK 500 3 HIS A 149 -62.46 76.63 REMARK 500 4 SER A 2 109.48 64.98 REMARK 500 4 ILE A 27 -65.90 -90.29 REMARK 500 4 ASN A 28 85.56 -166.29 REMARK 500 4 SER A 29 145.60 -173.21 REMARK 500 4 THR A 65 -47.56 58.12 REMARK 500 4 ASN A 81 61.33 65.04 REMARK 500 4 GLN A 143 -91.14 -126.10 REMARK 500 4 LEU A 144 156.10 67.65 REMARK 500 4 HIS A 149 67.00 66.96 REMARK 500 4 HIS A 150 -52.56 164.86 REMARK 500 5 SER A 2 158.97 74.15 REMARK 500 5 ILE A 27 -65.89 -103.58 REMARK 500 5 ASN A 28 96.46 -168.98 REMARK 500 5 SER A 29 131.61 -178.96 REMARK 500 5 THR A 65 30.26 -163.73 REMARK 500 5 LEU A 144 -166.72 -101.68 REMARK 500 6 SER A 2 139.90 62.51 REMARK 500 6 ASN A 28 -83.01 -127.62 REMARK 500 6 LEU A 31 -169.33 -113.31 REMARK 500 6 ASP A 67 30.96 -77.73 REMARK 500 6 ASN A 117 30.17 70.01 REMARK 500 6 HIS A 149 -76.43 -90.73 REMARK 500 7 ILE A 27 -65.48 -96.88 REMARK 500 7 ASN A 28 -69.35 -129.50 REMARK 500 7 ASN A 81 61.61 64.75 REMARK 500 7 HIS A 146 -64.42 -130.66 REMARK 500 8 ILE A 27 -61.78 -101.13 REMARK 500 8 LEU A 31 146.69 76.70 REMARK 500 8 HIS A 148 125.79 74.07 REMARK 500 8 HIS A 149 -64.05 -132.71 REMARK 500 9 ILE A 27 -66.36 -92.46 REMARK 500 9 ASN A 28 115.81 -174.89 REMARK 500 REMARK 500 THIS ENTRY HAS 136 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 7 OD1 REMARK 620 2 ASP A 9 OD1 79.5 REMARK 620 3 ASP A 9 OD2 123.9 51.6 REMARK 620 4 ASN A 11 OD1 83.9 70.7 100.9 REMARK 620 5 GLU A 13 O 74.6 139.6 161.2 76.1 REMARK 620 6 SER A 15 OG 157.2 122.1 78.6 95.9 83.2 REMARK 620 7 ASP A 18 OD1 80.7 90.0 74.6 157.2 115.2 104.8 REMARK 620 8 ASP A 18 OD2 110.5 134.8 91.6 151.3 83.8 61.1 51.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 40 OD1 REMARK 620 2 ASP A 42 OD1 83.3 REMARK 620 3 ASP A 42 OD2 128.5 52.3 REMARK 620 4 ASN A 44 OD1 79.6 70.0 103.6 REMARK 620 5 TYR A 46 O 78.7 139.2 151.8 70.9 REMARK 620 6 ASP A 51 OD1 92.2 102.6 76.2 169.4 114.3 REMARK 620 7 ASP A 51 OD2 127.7 135.9 84.2 137.7 82.7 52.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 203 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 78 OD1 REMARK 620 2 ASP A 80 OD1 78.3 REMARK 620 3 ASP A 80 OD2 108.0 50.3 REMARK 620 4 ASN A 82 OD1 79.6 70.2 114.8 REMARK 620 5 ILE A 84 O 77.6 135.0 173.8 68.5 REMARK 620 6 ASP A 86 OD1 153.9 120.8 98.2 90.0 76.3 REMARK 620 7 ASP A 89 OD1 97.1 145.1 100.8 143.6 75.4 77.2 REMARK 620 8 ASP A 89 OD2 71.8 96.1 68.7 150.4 111.3 119.2 50.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 204 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 112 OD1 REMARK 620 2 ASP A 114 OD1 82.4 REMARK 620 3 ASP A 114 OD2 123.3 51.2 REMARK 620 4 ASN A 116 OD1 78.4 69.0 106.6 REMARK 620 5 VAL A 118 O 75.8 138.7 160.7 72.6 REMARK 620 6 ASP A 120 OD1 152.2 112.8 82.9 85.5 77.8 REMARK 620 7 ASP A 123 OD1 106.1 141.2 96.1 149.4 79.1 77.1 REMARK 620 8 ASP A 123 OD2 78.7 94.0 74.8 153.0 115.0 121.0 52.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8X39 RELATED DB: PDB REMARK 900 RELATED ID: 12024 RELATED DB: BMRB DBREF 8X3A A 2 143 UNP Q2HPT9 Q2HPT9_ACETH 464 605 SEQADV 8X3A MET A 1 UNP Q2HPT9 INITIATING METHIONINE SEQADV 8X3A LEU A 144 UNP Q2HPT9 EXPRESSION TAG SEQADV 8X3A GLU A 145 UNP Q2HPT9 EXPRESSION TAG SEQADV 8X3A HIS A 146 UNP Q2HPT9 EXPRESSION TAG SEQADV 8X3A HIS A 147 UNP Q2HPT9 EXPRESSION TAG SEQADV 8X3A HIS A 148 UNP Q2HPT9 EXPRESSION TAG SEQADV 8X3A HIS A 149 UNP Q2HPT9 EXPRESSION TAG SEQADV 8X3A HIS A 150 UNP Q2HPT9 EXPRESSION TAG SEQADV 8X3A HIS A 151 UNP Q2HPT9 EXPRESSION TAG SEQADV 8X3A HIS A 152 UNP Q2HPT9 EXPRESSION TAG SEQRES 1 A 152 MET SER VAL LYS ILE GLY ASP ILE ASP GLY ASN GLY GLU SEQRES 2 A 152 ILE SER SER ILE ASP TYR ALA ILE LEU LYS SER HIS LEU SEQRES 3 A 152 ILE ASN SER ASN LEU THR PHE LYS GLN LEU ALA ALA ALA SEQRES 4 A 152 ASP VAL ASP GLY ASN GLY TYR VAL ASN SER ILE ASP LEU SEQRES 5 A 152 ALA ILE LEU GLN MET TYR LEU LEU GLY LYS GLY GLY THR SEQRES 6 A 152 SER ASP ILE GLY LYS ASN ARG ILE TYR THR TYR GLY ASP SEQRES 7 A 152 ILE ASP ASN ASN GLY ILE VAL ASP GLU ASN ASP TYR ILE SEQRES 8 A 152 LEU ILE CYS ASN HIS ILE ASN GLY THR GLY GLN LEU SER SEQRES 9 A 152 ASP ALA SER LEU PHE ALA ALA ASP ALA ASP GLY ASN ASN SEQRES 10 A 152 VAL ILE ASP GLN THR ASP ARG ILE LEU ILE GLU LYS TYR SEQRES 11 A 152 ILE THR GLY ARG ILE THR HIS LEU PRO VAL GLY ASN GLN SEQRES 12 A 152 LEU GLU HIS HIS HIS HIS HIS HIS HIS HET CA A 201 1 HET CA A 202 1 HET CA A 203 1 HET CA A 204 1 HETNAM CA CALCIUM ION FORMUL 2 CA 4(CA 2+) HELIX 1 AA1 SER A 15 SER A 29 1 15 HELIX 2 AA2 THR A 32 ASP A 40 1 9 HELIX 3 AA3 ASN A 48 GLY A 61 1 14 HELIX 4 AA4 ASP A 86 GLY A 99 1 14 HELIX 5 AA5 SER A 104 ALA A 111 1 8 HELIX 6 AA6 ASP A 120 THR A 132 1 13 SHEET 1 AA1 2 VAL A 3 LYS A 4 0 SHEET 2 AA1 2 ASN A 71 ARG A 72 -1 O ARG A 72 N VAL A 3 LINK OD1 ASP A 7 CA CA A 201 1555 1555 2.30 LINK OD1 ASP A 9 CA CA A 201 1555 1555 2.48 LINK OD2 ASP A 9 CA CA A 201 1555 1555 2.34 LINK OD1 ASN A 11 CA CA A 201 1555 1555 2.41 LINK O GLU A 13 CA CA A 201 1555 1555 2.39 LINK OG SER A 15 CA CA A 201 1555 1555 2.68 LINK OD1 ASP A 18 CA CA A 201 1555 1555 2.44 LINK OD2 ASP A 18 CA CA A 201 1555 1555 2.40 LINK OD1 ASP A 40 CA CA A 202 1555 1555 2.26 LINK OD1 ASP A 42 CA CA A 202 1555 1555 2.37 LINK OD2 ASP A 42 CA CA A 202 1555 1555 2.42 LINK OD1 ASN A 44 CA CA A 202 1555 1555 2.46 LINK O TYR A 46 CA CA A 202 1555 1555 2.38 LINK OD1 ASP A 51 CA CA A 202 1555 1555 2.42 LINK OD2 ASP A 51 CA CA A 202 1555 1555 2.33 LINK OD1 ASP A 78 CA CA A 203 1555 1555 2.28 LINK OD1 ASP A 80 CA CA A 203 1555 1555 2.51 LINK OD2 ASP A 80 CA CA A 203 1555 1555 2.46 LINK OD1 ASN A 82 CA CA A 203 1555 1555 2.55 LINK O ILE A 84 CA CA A 203 1555 1555 2.60 LINK OD1 ASP A 86 CA CA A 203 1555 1555 2.34 LINK OD1 ASP A 89 CA CA A 203 1555 1555 2.32 LINK OD2 ASP A 89 CA CA A 203 1555 1555 2.63 LINK OD1 ASP A 112 CA CA A 204 1555 1555 2.31 LINK OD1 ASP A 114 CA CA A 204 1555 1555 2.43 LINK OD2 ASP A 114 CA CA A 204 1555 1555 2.45 LINK OD1 ASN A 116 CA CA A 204 1555 1555 2.44 LINK O VAL A 118 CA CA A 204 1555 1555 2.42 LINK OD1 ASP A 120 CA CA A 204 1555 1555 2.37 LINK OD1 ASP A 123 CA CA A 204 1555 1555 2.35 LINK OD2 ASP A 123 CA CA A 204 1555 1555 2.47 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 ENDMDL MODEL 2 ENDMDL MODEL 3 ENDMDL MODEL 4 ENDMDL MODEL 5 ENDMDL MODEL 6 ENDMDL MODEL 7 ENDMDL MODEL 8 ENDMDL MODEL 9 ENDMDL MODEL 10 ENDMDL MODEL 11 ENDMDL MODEL 12 ENDMDL MODEL 13 ENDMDL MODEL 14 ENDMDL MODEL 15 ENDMDL MODEL 16 ENDMDL MODEL 17 ENDMDL MODEL 18 ENDMDL MODEL 19 ENDMDL MODEL 20 ENDMDL CONECT 101 2290 CONECT 132 2290 CONECT 133 2290 CONECT 151 2290 CONECT 169 2290 CONECT 205 2290 CONECT 247 2290 CONECT 248 2290 CONECT 597 2291 CONECT 625 2291 CONECT 626 2291 CONECT 644 2291 CONECT 662 2291 CONECT 746 2291 CONECT 747 2291 CONECT 1166 2292 CONECT 1197 2292 CONECT 1198 2292 CONECT 1223 2292 CONECT 1241 2292 CONECT 1279 2292 CONECT 1320 2292 CONECT 1321 2292 CONECT 1653 2293 CONECT 1675 2293 CONECT 1676 2293 CONECT 1694 2293 CONECT 1719 2293 CONECT 1757 2293 CONECT 1800 2293 CONECT 1801 2293 CONECT 2290 101 132 133 151 CONECT 2290 169 205 247 248 CONECT 2291 597 625 626 644 CONECT 2291 662 746 747 CONECT 2292 1166 1197 1198 1223 CONECT 2292 1241 1279 1320 1321 CONECT 2293 1653 1675 1676 1694 CONECT 2293 1719 1757 1800 1801 MASTER 206 0 4 6 2 0 0 6 1163 1 39 12 END