HEADER VIRAL PROTEIN 17-NOV-23 8X5P TITLE CRYSTAL STRUCTURE OF MJHKUR-COV SPIKE HR1 IN COMPLEX WITH EK1 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPIKE PROTEIN S2,EK1 PEPTIDE; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CORONAVIRUS HKU23; SOURCE 3 ORGANISM_TAXID: 2030446; SOURCE 4 GENE: S; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MJHKUR-COV, SPIKE PROTEIN, POSTFUSION, VIRUS, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.ZHU,X.YANG,F.SUN REVDAT 1 21-MAY-25 8X5P 0 JRNL AUTH Y.ZHU,F.SUN,L.LU JRNL TITL FUSION MECHANISM OF MJHKUR-COV SPIKE AND ITS ENTRY INHIBITOR JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.61 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.2 REMARK 3 NUMBER OF REFLECTIONS : 17008 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.284 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 858 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.6100 - 4.5500 0.97 2860 174 0.2364 0.2883 REMARK 3 2 4.5500 - 3.6100 0.81 2314 135 0.1867 0.2532 REMARK 3 3 3.6100 - 3.1600 0.96 2762 147 0.2255 0.2621 REMARK 3 4 3.1600 - 2.8700 0.98 2781 120 0.2542 0.3286 REMARK 3 5 2.8700 - 2.6600 0.97 2712 142 0.2439 0.2821 REMARK 3 6 2.6600 - 2.5100 0.95 2721 140 0.2632 0.3407 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.510 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 NULL REMARK 3 ANGLE : 0.764 NULL REMARK 3 CHIRALITY : 0.048 701 REMARK 3 PLANARITY : 0.004 744 REMARK 3 DIHEDRAL : 3.674 553 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 2 THROUGH 109) REMARK 3 ORIGIN FOR THE GROUP (A): 4.6205 28.5266 45.9158 REMARK 3 T TENSOR REMARK 3 T11: 0.2154 T22: 0.1154 REMARK 3 T33: 0.1764 T12: -0.0037 REMARK 3 T13: -0.0053 T23: 0.0039 REMARK 3 L TENSOR REMARK 3 L11: 0.7819 L22: 0.0967 REMARK 3 L33: 1.7199 L12: -0.1123 REMARK 3 L13: 0.2182 L23: 0.5209 REMARK 3 S TENSOR REMARK 3 S11: -0.0851 S12: -0.0575 S13: -0.0307 REMARK 3 S21: 0.1377 S22: -0.0524 S23: -0.1548 REMARK 3 S31: 0.0769 S32: 0.1336 S33: 0.0097 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 2 THROUGH 110) REMARK 3 ORIGIN FOR THE GROUP (A): -5.4969 30.5739 47.7022 REMARK 3 T TENSOR REMARK 3 T11: 0.1296 T22: 0.0442 REMARK 3 T33: 0.2045 T12: -0.0030 REMARK 3 T13: -0.0066 T23: 0.0111 REMARK 3 L TENSOR REMARK 3 L11: 0.9814 L22: 0.9722 REMARK 3 L33: 1.7620 L12: -0.0979 REMARK 3 L13: 0.2986 L23: -0.2566 REMARK 3 S TENSOR REMARK 3 S11: -0.0669 S12: 0.0278 S13: -0.0967 REMARK 3 S21: 0.0781 S22: -0.0642 S23: 0.0598 REMARK 3 S31: -0.2133 S32: -0.3925 S33: -0.0083 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'C' AND RESID 2 THROUGH 109) REMARK 3 ORIGIN FOR THE GROUP (A): 1.0122 38.2008 46.3590 REMARK 3 T TENSOR REMARK 3 T11: 0.1570 T22: 0.1215 REMARK 3 T33: 0.1797 T12: -0.0322 REMARK 3 T13: 0.0090 T23: -0.0023 REMARK 3 L TENSOR REMARK 3 L11: 0.4691 L22: 0.7415 REMARK 3 L33: 1.5642 L12: -0.2713 REMARK 3 L13: -0.1192 L23: -0.4711 REMARK 3 S TENSOR REMARK 3 S11: 0.0339 S12: 0.0032 S13: 0.0930 REMARK 3 S21: 0.0518 S22: 0.0729 S23: 0.0556 REMARK 3 S31: -0.6376 S32: 0.0123 S33: 0.0095 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN 'D' AND RESID 1 THROUGH 110) REMARK 3 ORIGIN FOR THE GROUP (A): 19.7695 35.0165 29.6208 REMARK 3 T TENSOR REMARK 3 T11: 0.0808 T22: 0.1302 REMARK 3 T33: 0.1655 T12: -0.0347 REMARK 3 T13: 0.0032 T23: -0.0277 REMARK 3 L TENSOR REMARK 3 L11: 0.3320 L22: 0.4292 REMARK 3 L33: 1.2675 L12: -0.2969 REMARK 3 L13: -0.7030 L23: -0.4299 REMARK 3 S TENSOR REMARK 3 S11: 0.0857 S12: -0.0360 S13: -0.0314 REMARK 3 S21: 0.0899 S22: 0.0824 S23: 0.0373 REMARK 3 S31: -0.2904 S32: -0.4580 S33: 0.0319 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN 'E' AND RESID 1 THROUGH 111) REMARK 3 ORIGIN FOR THE GROUP (A): 29.2951 34.9786 30.0731 REMARK 3 T TENSOR REMARK 3 T11: 0.0836 T22: 0.0752 REMARK 3 T33: 0.1055 T12: -0.0015 REMARK 3 T13: -0.0017 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 0.2545 L22: 0.1906 REMARK 3 L33: 1.1473 L12: 0.1677 REMARK 3 L13: -0.4156 L23: 0.7012 REMARK 3 S TENSOR REMARK 3 S11: 0.0843 S12: -0.0317 S13: 0.0146 REMARK 3 S21: 0.0519 S22: 0.0898 S23: 0.0332 REMARK 3 S31: -0.1155 S32: 0.2802 S33: 0.1820 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN 'F' AND RESID 1 THROUGH 111) REMARK 3 ORIGIN FOR THE GROUP (A): 24.4100 26.8074 30.0065 REMARK 3 T TENSOR REMARK 3 T11: 0.1010 T22: 0.0986 REMARK 3 T33: 0.1368 T12: -0.0232 REMARK 3 T13: -0.0122 T23: 0.0117 REMARK 3 L TENSOR REMARK 3 L11: 0.2727 L22: 0.5366 REMARK 3 L33: 3.2800 L12: -0.0407 REMARK 3 L13: 0.1272 L23: -0.3644 REMARK 3 S TENSOR REMARK 3 S11: 0.0884 S12: -0.0015 S13: 0.0629 REMARK 3 S21: 0.0632 S22: 0.1151 S23: 0.0115 REMARK 3 S31: 0.4567 S32: -0.1692 S33: 0.1858 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8X5P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-NOV-23. REMARK 100 THE DEPOSITION ID IS D_1300042669. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-OCT-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17070 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.510 REMARK 200 RESOLUTION RANGE LOW (A) : 29.610 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.51 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.61 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM CITRATE, CITRIC ACID PH REMARK 280 5.5, 20%(W/V) PEG 3000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 36.68650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.17200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 36.68650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 21.17200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -96.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -101.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 SER A 58 REMARK 465 ASN A 59 REMARK 465 THR A 60 REMARK 465 PHE A 61 REMARK 465 GLY A 62 REMARK 465 ALA A 63 REMARK 465 ILE A 64 REMARK 465 SER A 65 REMARK 465 SER A 66 REMARK 465 SER A 67 REMARK 465 ILE A 68 REMARK 465 SER A 69 REMARK 465 SER A 70 REMARK 465 GLY A 71 REMARK 465 GLY A 72 REMARK 465 ARG A 73 REMARK 465 GLY A 74 REMARK 465 GLY A 75 REMARK 465 SER A 76 REMARK 465 LEU A 77 REMARK 465 ASP A 78 REMARK 465 GLU A 110 REMARK 465 LEU A 111 REMARK 465 GLY B 1 REMARK 465 PHE B 61 REMARK 465 GLY B 62 REMARK 465 ALA B 63 REMARK 465 ILE B 64 REMARK 465 SER B 65 REMARK 465 SER B 66 REMARK 465 SER B 67 REMARK 465 ILE B 68 REMARK 465 SER B 69 REMARK 465 SER B 70 REMARK 465 GLY B 71 REMARK 465 GLY B 72 REMARK 465 ARG B 73 REMARK 465 GLY B 74 REMARK 465 GLY B 75 REMARK 465 SER B 76 REMARK 465 LEU B 111 REMARK 465 GLY C 1 REMARK 465 THR C 60 REMARK 465 PHE C 61 REMARK 465 GLY C 62 REMARK 465 ALA C 63 REMARK 465 ILE C 64 REMARK 465 SER C 65 REMARK 465 SER C 66 REMARK 465 SER C 67 REMARK 465 ILE C 68 REMARK 465 SER C 69 REMARK 465 SER C 70 REMARK 465 GLY C 71 REMARK 465 GLY C 72 REMARK 465 ARG C 73 REMARK 465 GLY C 74 REMARK 465 GLY C 75 REMARK 465 SER C 76 REMARK 465 LEU C 77 REMARK 465 ASP C 78 REMARK 465 GLN C 79 REMARK 465 GLU C 110 REMARK 465 LEU C 111 REMARK 465 ASN D 59 REMARK 465 THR D 60 REMARK 465 PHE D 61 REMARK 465 GLY D 62 REMARK 465 ALA D 63 REMARK 465 ILE D 64 REMARK 465 SER D 65 REMARK 465 SER D 66 REMARK 465 SER D 67 REMARK 465 ILE D 68 REMARK 465 SER D 69 REMARK 465 SER D 70 REMARK 465 GLY D 71 REMARK 465 GLY D 72 REMARK 465 ARG D 73 REMARK 465 GLY D 74 REMARK 465 GLY D 75 REMARK 465 LEU D 111 REMARK 465 PHE E 61 REMARK 465 GLY E 62 REMARK 465 ALA E 63 REMARK 465 ILE E 64 REMARK 465 SER E 65 REMARK 465 SER E 66 REMARK 465 SER E 67 REMARK 465 ILE E 68 REMARK 465 SER E 69 REMARK 465 SER E 70 REMARK 465 GLY E 71 REMARK 465 GLY E 72 REMARK 465 ARG E 73 REMARK 465 GLY E 74 REMARK 465 GLY E 75 REMARK 465 THR F 60 REMARK 465 PHE F 61 REMARK 465 GLY F 62 REMARK 465 ALA F 63 REMARK 465 ILE F 64 REMARK 465 SER F 65 REMARK 465 SER F 66 REMARK 465 SER F 67 REMARK 465 ILE F 68 REMARK 465 SER F 69 REMARK 465 SER F 70 REMARK 465 GLY F 71 REMARK 465 GLY F 72 REMARK 465 ARG F 73 REMARK 465 GLY F 74 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 228 O HOH D 233 1.85 REMARK 500 OD2 ASP B 78 O HOH B 201 1.89 REMARK 500 O HOH C 201 O HOH C 220 1.91 REMARK 500 O HOH F 313 O HOH F 321 1.91 REMARK 500 O HOH A 306 O HOH A 315 1.97 REMARK 500 O TYR F 105 O HOH F 301 2.00 REMARK 500 O ASN A 16 O HOH A 301 2.02 REMARK 500 NZ LYS A 93 O HOH A 302 2.06 REMARK 500 OE1 GLU C 9 O HOH C 201 2.11 REMARK 500 OG1 THR E 60 O HOH E 201 2.13 REMARK 500 OD2 ASP E 41 O HOH E 202 2.13 REMARK 500 NZ LYS C 93 OD1 ASP D 41 2.14 REMARK 500 CL CL A 201 O HOH B 209 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH E 221 O HOH E 222 2655 1.83 REMARK 500 NZ LYS B 93 OD2 ASP F 41 3455 1.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS C 93 CD LYS C 93 CE -0.200 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 85 CB - CG - CD2 ANGL. DEV. = 10.4 DEGREES REMARK 500 ASP A 107 CB - CG - OD1 ANGL. DEV. = -6.7 DEGREES REMARK 500 ASP D 41 CB - CG - OD1 ANGL. DEV. = -12.5 DEGREES REMARK 500 ASP D 41 CB - CG - OD2 ANGL. DEV. = 9.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU C 57 37.37 -76.72 REMARK 500 SER C 58 -0.53 -169.71 REMARK 500 GLU F 110 -178.52 149.57 REMARK 500 REMARK 500 REMARK: NULL DBREF 8X5P A 1 69 UNP Q0Q4F2 SPIKE_BC133 981 1049 DBREF 8X5P A 76 111 PDB 8X5P 8X5P 76 111 DBREF 8X5P B 1 69 UNP Q0Q4F2 SPIKE_BC133 981 1049 DBREF 8X5P B 76 111 PDB 8X5P 8X5P 76 111 DBREF 8X5P C 1 69 UNP Q0Q4F2 SPIKE_BC133 981 1049 DBREF 8X5P C 76 111 PDB 8X5P 8X5P 76 111 DBREF 8X5P D 1 69 UNP Q0Q4F2 SPIKE_BC133 981 1049 DBREF 8X5P D 76 111 PDB 8X5P 8X5P 76 111 DBREF 8X5P E 1 69 UNP Q0Q4F2 SPIKE_BC133 981 1049 DBREF 8X5P E 76 111 PDB 8X5P 8X5P 76 111 DBREF 8X5P F 1 69 UNP Q0Q4F2 SPIKE_BC133 981 1049 DBREF 8X5P F 76 111 PDB 8X5P 8X5P 76 111 SEQADV 8X5P ALA A 8 UNP Q0Q4F2 SER 988 CONFLICT SEQADV 8X5P ASN A 48 UNP Q0Q4F2 GLN 1028 CONFLICT SEQADV 8X5P SER A 70 UNP Q0Q4F2 LINKER SEQADV 8X5P GLY A 71 UNP Q0Q4F2 LINKER SEQADV 8X5P GLY A 72 UNP Q0Q4F2 LINKER SEQADV 8X5P ARG A 73 UNP Q0Q4F2 LINKER SEQADV 8X5P GLY A 74 UNP Q0Q4F2 LINKER SEQADV 8X5P GLY A 75 UNP Q0Q4F2 LINKER SEQADV 8X5P ALA B 8 UNP Q0Q4F2 SER 988 CONFLICT SEQADV 8X5P ASN B 48 UNP Q0Q4F2 GLN 1028 CONFLICT SEQADV 8X5P SER B 70 UNP Q0Q4F2 LINKER SEQADV 8X5P GLY B 71 UNP Q0Q4F2 LINKER SEQADV 8X5P GLY B 72 UNP Q0Q4F2 LINKER SEQADV 8X5P ARG B 73 UNP Q0Q4F2 LINKER SEQADV 8X5P GLY B 74 UNP Q0Q4F2 LINKER SEQADV 8X5P GLY B 75 UNP Q0Q4F2 LINKER SEQADV 8X5P ALA C 8 UNP Q0Q4F2 SER 988 CONFLICT SEQADV 8X5P ASN C 48 UNP Q0Q4F2 GLN 1028 CONFLICT SEQADV 8X5P SER C 70 UNP Q0Q4F2 LINKER SEQADV 8X5P GLY C 71 UNP Q0Q4F2 LINKER SEQADV 8X5P GLY C 72 UNP Q0Q4F2 LINKER SEQADV 8X5P ARG C 73 UNP Q0Q4F2 LINKER SEQADV 8X5P GLY C 74 UNP Q0Q4F2 LINKER SEQADV 8X5P GLY C 75 UNP Q0Q4F2 LINKER SEQADV 8X5P ALA D 8 UNP Q0Q4F2 SER 988 CONFLICT SEQADV 8X5P ASN D 48 UNP Q0Q4F2 GLN 1028 CONFLICT SEQADV 8X5P SER D 70 UNP Q0Q4F2 LINKER SEQADV 8X5P GLY D 71 UNP Q0Q4F2 LINKER SEQADV 8X5P GLY D 72 UNP Q0Q4F2 LINKER SEQADV 8X5P ARG D 73 UNP Q0Q4F2 LINKER SEQADV 8X5P GLY D 74 UNP Q0Q4F2 LINKER SEQADV 8X5P GLY D 75 UNP Q0Q4F2 LINKER SEQADV 8X5P ALA E 8 UNP Q0Q4F2 SER 988 CONFLICT SEQADV 8X5P ASN E 48 UNP Q0Q4F2 GLN 1028 CONFLICT SEQADV 8X5P SER E 70 UNP Q0Q4F2 LINKER SEQADV 8X5P GLY E 71 UNP Q0Q4F2 LINKER SEQADV 8X5P GLY E 72 UNP Q0Q4F2 LINKER SEQADV 8X5P ARG E 73 UNP Q0Q4F2 LINKER SEQADV 8X5P GLY E 74 UNP Q0Q4F2 LINKER SEQADV 8X5P GLY E 75 UNP Q0Q4F2 LINKER SEQADV 8X5P ALA F 8 UNP Q0Q4F2 SER 988 CONFLICT SEQADV 8X5P ASN F 48 UNP Q0Q4F2 GLN 1028 CONFLICT SEQADV 8X5P SER F 70 UNP Q0Q4F2 LINKER SEQADV 8X5P GLY F 71 UNP Q0Q4F2 LINKER SEQADV 8X5P GLY F 72 UNP Q0Q4F2 LINKER SEQADV 8X5P ARG F 73 UNP Q0Q4F2 LINKER SEQADV 8X5P GLY F 74 UNP Q0Q4F2 LINKER SEQADV 8X5P GLY F 75 UNP Q0Q4F2 LINKER SEQRES 1 A 111 GLY ILE THR GLN GLN VAL LEU ALA GLU ASN GLN LYS LEU SEQRES 2 A 111 ILE ALA ASN LYS PHE ASN GLN ALA LEU GLY ALA MET GLN SEQRES 3 A 111 THR GLY PHE THR THR SER ASN LEU ALA PHE SER LYS VAL SEQRES 4 A 111 GLN ASP ALA VAL ASN ALA ASN ALA ASN ALA LEU SER LYS SEQRES 5 A 111 LEU ALA SER GLU LEU SER ASN THR PHE GLY ALA ILE SER SEQRES 6 A 111 SER SER ILE SER SER GLY GLY ARG GLY GLY SER LEU ASP SEQRES 7 A 111 GLN ILE ASN VAL THR PHE LEU ASP LEU GLU TYR GLU MET SEQRES 8 A 111 LYS LYS LEU GLU GLU ALA ILE LYS LYS LEU GLU GLU SER SEQRES 9 A 111 TYR ILE ASP LEU LYS GLU LEU SEQRES 1 B 111 GLY ILE THR GLN GLN VAL LEU ALA GLU ASN GLN LYS LEU SEQRES 2 B 111 ILE ALA ASN LYS PHE ASN GLN ALA LEU GLY ALA MET GLN SEQRES 3 B 111 THR GLY PHE THR THR SER ASN LEU ALA PHE SER LYS VAL SEQRES 4 B 111 GLN ASP ALA VAL ASN ALA ASN ALA ASN ALA LEU SER LYS SEQRES 5 B 111 LEU ALA SER GLU LEU SER ASN THR PHE GLY ALA ILE SER SEQRES 6 B 111 SER SER ILE SER SER GLY GLY ARG GLY GLY SER LEU ASP SEQRES 7 B 111 GLN ILE ASN VAL THR PHE LEU ASP LEU GLU TYR GLU MET SEQRES 8 B 111 LYS LYS LEU GLU GLU ALA ILE LYS LYS LEU GLU GLU SER SEQRES 9 B 111 TYR ILE ASP LEU LYS GLU LEU SEQRES 1 C 111 GLY ILE THR GLN GLN VAL LEU ALA GLU ASN GLN LYS LEU SEQRES 2 C 111 ILE ALA ASN LYS PHE ASN GLN ALA LEU GLY ALA MET GLN SEQRES 3 C 111 THR GLY PHE THR THR SER ASN LEU ALA PHE SER LYS VAL SEQRES 4 C 111 GLN ASP ALA VAL ASN ALA ASN ALA ASN ALA LEU SER LYS SEQRES 5 C 111 LEU ALA SER GLU LEU SER ASN THR PHE GLY ALA ILE SER SEQRES 6 C 111 SER SER ILE SER SER GLY GLY ARG GLY GLY SER LEU ASP SEQRES 7 C 111 GLN ILE ASN VAL THR PHE LEU ASP LEU GLU TYR GLU MET SEQRES 8 C 111 LYS LYS LEU GLU GLU ALA ILE LYS LYS LEU GLU GLU SER SEQRES 9 C 111 TYR ILE ASP LEU LYS GLU LEU SEQRES 1 D 111 GLY ILE THR GLN GLN VAL LEU ALA GLU ASN GLN LYS LEU SEQRES 2 D 111 ILE ALA ASN LYS PHE ASN GLN ALA LEU GLY ALA MET GLN SEQRES 3 D 111 THR GLY PHE THR THR SER ASN LEU ALA PHE SER LYS VAL SEQRES 4 D 111 GLN ASP ALA VAL ASN ALA ASN ALA ASN ALA LEU SER LYS SEQRES 5 D 111 LEU ALA SER GLU LEU SER ASN THR PHE GLY ALA ILE SER SEQRES 6 D 111 SER SER ILE SER SER GLY GLY ARG GLY GLY SER LEU ASP SEQRES 7 D 111 GLN ILE ASN VAL THR PHE LEU ASP LEU GLU TYR GLU MET SEQRES 8 D 111 LYS LYS LEU GLU GLU ALA ILE LYS LYS LEU GLU GLU SER SEQRES 9 D 111 TYR ILE ASP LEU LYS GLU LEU SEQRES 1 E 111 GLY ILE THR GLN GLN VAL LEU ALA GLU ASN GLN LYS LEU SEQRES 2 E 111 ILE ALA ASN LYS PHE ASN GLN ALA LEU GLY ALA MET GLN SEQRES 3 E 111 THR GLY PHE THR THR SER ASN LEU ALA PHE SER LYS VAL SEQRES 4 E 111 GLN ASP ALA VAL ASN ALA ASN ALA ASN ALA LEU SER LYS SEQRES 5 E 111 LEU ALA SER GLU LEU SER ASN THR PHE GLY ALA ILE SER SEQRES 6 E 111 SER SER ILE SER SER GLY GLY ARG GLY GLY SER LEU ASP SEQRES 7 E 111 GLN ILE ASN VAL THR PHE LEU ASP LEU GLU TYR GLU MET SEQRES 8 E 111 LYS LYS LEU GLU GLU ALA ILE LYS LYS LEU GLU GLU SER SEQRES 9 E 111 TYR ILE ASP LEU LYS GLU LEU SEQRES 1 F 111 GLY ILE THR GLN GLN VAL LEU ALA GLU ASN GLN LYS LEU SEQRES 2 F 111 ILE ALA ASN LYS PHE ASN GLN ALA LEU GLY ALA MET GLN SEQRES 3 F 111 THR GLY PHE THR THR SER ASN LEU ALA PHE SER LYS VAL SEQRES 4 F 111 GLN ASP ALA VAL ASN ALA ASN ALA ASN ALA LEU SER LYS SEQRES 5 F 111 LEU ALA SER GLU LEU SER ASN THR PHE GLY ALA ILE SER SEQRES 6 F 111 SER SER ILE SER SER GLY GLY ARG GLY GLY SER LEU ASP SEQRES 7 F 111 GLN ILE ASN VAL THR PHE LEU ASP LEU GLU TYR GLU MET SEQRES 8 F 111 LYS LYS LEU GLU GLU ALA ILE LYS LYS LEU GLU GLU SER SEQRES 9 F 111 TYR ILE ASP LEU LYS GLU LEU HET CL A 201 1 HET CL F 201 1 HETNAM CL CHLORIDE ION FORMUL 7 CL 2(CL 1-) FORMUL 9 HOH *141(H2 O) HELIX 1 AA1 ILE A 2 LEU A 57 1 56 HELIX 2 AA2 LEU A 87 SER A 104 1 18 HELIX 3 AA3 THR B 3 ASN B 59 1 57 HELIX 4 AA4 LEU B 87 SER B 104 1 18 HELIX 5 AA5 THR C 3 LEU C 57 1 55 HELIX 6 AA6 LEU C 87 SER C 104 1 18 HELIX 7 AA7 ILE D 2 LEU D 57 1 56 HELIX 8 AA8 LEU D 87 SER D 104 1 18 HELIX 9 AA9 ILE E 2 ASN E 59 1 58 HELIX 10 AB1 LEU E 87 SER E 104 1 18 HELIX 11 AB2 ILE F 2 SER F 58 1 57 HELIX 12 AB3 LEU F 87 SER F 104 1 18 SHEET 1 AA1 2 VAL C 82 PHE C 84 0 SHEET 2 AA1 2 SER F 76 ASP F 78 1 O LEU F 77 N PHE C 84 CRYST1 73.373 42.344 169.294 90.00 98.22 90.00 C 1 2 1 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013629 0.000000 0.001969 0.00000 SCALE2 0.000000 0.023616 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005968 0.00000 MASTER 523 0 2 12 2 0 0 6 4440 6 0 54 END