HEADER IMMUNE SYSTEM 21-NOV-23 8X6B TITLE CRYSTAL STRUCTURE OF IMMUNE RECEPTOR PVRIG IN COMPLEX WITH LIGAND TITLE 2 NECTIN-2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSMEMBRANE PROTEIN PVRIG; COMPND 3 CHAIN: B; COMPND 4 SYNONYM: CD112 RECEPTOR,CD112R,POLIOVIRUS RECEPTOR-RELATED COMPND 5 IMMUNOGLOBULIN DOMAIN-CONTAINING PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NECTIN-2; COMPND 9 CHAIN: A; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PVRIG, C7ORF15; SOURCE 6 EXPRESSION_SYSTEM: BACULOVIRUS TRANSFER VECTOR PFASTBAC1; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 136645; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: NECTIN2; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS COMPLEX, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR S.T.HU,P.HAN,H.WANG,J.X.QI REVDAT 2 08-MAY-24 8X6B 1 JRNL REVDAT 1 24-APR-24 8X6B 0 JRNL AUTH S.HU,P.HAN,M.WANG,X.CAO,H.LIU,S.ZHANG,S.ZHANG,J.LIU,Y.HAN, JRNL AUTH 2 J.XIAO,Q.CHEN,K.MIAO,J.QI,S.TAN,G.F.GAO,H.WANG JRNL TITL STRUCTURAL BASIS FOR THE IMMUNE RECOGNITION AND SELECTIVITY JRNL TITL 2 OF THE IMMUNE RECEPTOR PVRIG FOR LIGAND NECTIN-2. JRNL REF STRUCTURE 2024 JRNL REFN ISSN 0969-2126 JRNL PMID 38626767 JRNL DOI 10.1016/J.STR.2024.03.012 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19RC3_4028 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 19178 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.160 REMARK 3 FREE R VALUE TEST SET COUNT : 990 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.4900 - 3.8300 1.00 2733 179 0.1940 0.2397 REMARK 3 2 3.8200 - 3.0400 1.00 2591 175 0.1907 0.2126 REMARK 3 3 3.0400 - 2.6500 1.00 2610 128 0.2221 0.2593 REMARK 3 4 2.6500 - 2.4100 1.00 2573 126 0.2291 0.2733 REMARK 3 5 2.4100 - 2.2400 1.00 2580 114 0.2172 0.2420 REMARK 3 6 2.2400 - 2.1100 1.00 2558 120 0.2085 0.2324 REMARK 3 7 2.1100 - 2.0000 1.00 2543 148 0.2061 0.2481 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.162 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.250 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.37 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1798 REMARK 3 ANGLE : 0.977 2452 REMARK 3 CHIRALITY : 0.060 272 REMARK 3 PLANARITY : 0.008 319 REMARK 3 DIHEDRAL : 6.976 245 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 3 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.0545 26.2089 30.8231 REMARK 3 T TENSOR REMARK 3 T11: 0.3104 T22: 0.2214 REMARK 3 T33: 0.2722 T12: 0.0149 REMARK 3 T13: -0.0065 T23: -0.1158 REMARK 3 L TENSOR REMARK 3 L11: 2.0003 L22: 7.6603 REMARK 3 L33: 4.1489 L12: 6.1372 REMARK 3 L13: 4.2542 L23: -1.7550 REMARK 3 S TENSOR REMARK 3 S11: -0.4700 S12: 1.1748 S13: -1.6995 REMARK 3 S21: -0.3614 S22: 0.3956 S23: -0.3635 REMARK 3 S31: 0.4901 S32: 0.4121 S33: 0.0731 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 12 THROUGH 27 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.8416 26.6232 35.3202 REMARK 3 T TENSOR REMARK 3 T11: 0.2622 T22: 0.2410 REMARK 3 T33: 0.3931 T12: 0.0098 REMARK 3 T13: 0.0637 T23: 0.0283 REMARK 3 L TENSOR REMARK 3 L11: 6.7108 L22: 6.1615 REMARK 3 L33: 8.0960 L12: -1.6799 REMARK 3 L13: 5.9427 L23: -1.0477 REMARK 3 S TENSOR REMARK 3 S11: 0.0555 S12: -0.3939 S13: -0.8950 REMARK 3 S21: -0.0258 S22: 0.3438 S23: 1.1670 REMARK 3 S31: -0.0127 S32: -0.8259 S33: -0.4020 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 28 THROUGH 80 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.4830 32.4426 42.5621 REMARK 3 T TENSOR REMARK 3 T11: 0.1968 T22: 0.1580 REMARK 3 T33: 0.1864 T12: 0.0205 REMARK 3 T13: 0.0091 T23: 0.0296 REMARK 3 L TENSOR REMARK 3 L11: 3.3915 L22: 4.6364 REMARK 3 L33: 5.0400 L12: 0.2766 REMARK 3 L13: -2.3910 L23: 0.3544 REMARK 3 S TENSOR REMARK 3 S11: -0.1748 S12: -0.1882 S13: -0.3208 REMARK 3 S21: 0.4500 S22: 0.1845 S23: 0.3943 REMARK 3 S31: 0.3053 S32: -0.1222 S33: -0.0252 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 81 THROUGH 93 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.4753 35.5403 30.4725 REMARK 3 T TENSOR REMARK 3 T11: 0.3679 T22: 0.4974 REMARK 3 T33: 0.5529 T12: -0.0082 REMARK 3 T13: 0.0016 T23: 0.1979 REMARK 3 L TENSOR REMARK 3 L11: 7.6025 L22: 5.6844 REMARK 3 L33: 9.6200 L12: 2.6435 REMARK 3 L13: -2.3821 L23: -6.3893 REMARK 3 S TENSOR REMARK 3 S11: 0.0787 S12: -0.0023 S13: 0.6414 REMARK 3 S21: 0.4676 S22: 0.8438 S23: 1.4980 REMARK 3 S31: -0.1276 S32: -1.7177 S33: -0.9197 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 94 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.0127 32.2740 33.5936 REMARK 3 T TENSOR REMARK 3 T11: 0.1813 T22: 0.1692 REMARK 3 T33: 0.1678 T12: 0.0264 REMARK 3 T13: -0.0074 T23: -0.0231 REMARK 3 L TENSOR REMARK 3 L11: 5.8344 L22: 2.7069 REMARK 3 L33: 6.3955 L12: -2.2702 REMARK 3 L13: 5.2476 L23: -2.7491 REMARK 3 S TENSOR REMARK 3 S11: 0.3661 S12: 0.5123 S13: -0.3433 REMARK 3 S21: -0.2198 S22: -0.0123 S23: 0.1413 REMARK 3 S31: 0.5523 S32: 0.1312 S33: -0.3625 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.3654 54.2026 36.6640 REMARK 3 T TENSOR REMARK 3 T11: 0.6924 T22: 0.2199 REMARK 3 T33: 0.4967 T12: 0.0321 REMARK 3 T13: -0.0096 T23: 0.0481 REMARK 3 L TENSOR REMARK 3 L11: 5.8885 L22: 4.0397 REMARK 3 L33: 3.7120 L12: 1.6861 REMARK 3 L13: -2.4964 L23: -1.7535 REMARK 3 S TENSOR REMARK 3 S11: 0.5419 S12: 0.5112 S13: 1.3317 REMARK 3 S21: -0.5548 S22: 0.0932 S23: 0.0546 REMARK 3 S31: -0.8597 S32: -0.3557 S33: -0.6329 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 20 THROUGH 50 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.4003 43.7125 39.9738 REMARK 3 T TENSOR REMARK 3 T11: 0.2726 T22: 0.1436 REMARK 3 T33: 0.2204 T12: 0.0030 REMARK 3 T13: -0.0671 T23: 0.0366 REMARK 3 L TENSOR REMARK 3 L11: 7.0874 L22: 4.2993 REMARK 3 L33: 3.6867 L12: 1.0521 REMARK 3 L13: -2.5778 L23: -1.6692 REMARK 3 S TENSOR REMARK 3 S11: 0.0155 S12: 0.0682 S13: 0.4054 REMARK 3 S21: -0.3126 S22: -0.0317 S23: 0.1222 REMARK 3 S31: -0.2465 S32: 0.0170 S33: 0.0309 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 51 THROUGH 94 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.7782 38.8395 44.9831 REMARK 3 T TENSOR REMARK 3 T11: 0.2267 T22: 0.1604 REMARK 3 T33: 0.2025 T12: -0.0096 REMARK 3 T13: -0.0472 T23: 0.0148 REMARK 3 L TENSOR REMARK 3 L11: 7.0480 L22: 6.5756 REMARK 3 L33: 6.5236 L12: -0.1798 REMARK 3 L13: -1.0289 L23: 0.0895 REMARK 3 S TENSOR REMARK 3 S11: 0.0242 S12: -0.6013 S13: 0.2227 REMARK 3 S21: 0.6706 S22: -0.1266 S23: -0.1851 REMARK 3 S31: -0.1376 S32: 0.4936 S33: 0.1054 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 95 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.4741 46.5760 34.9759 REMARK 3 T TENSOR REMARK 3 T11: 0.3941 T22: 0.3139 REMARK 3 T33: 0.2927 T12: 0.0011 REMARK 3 T13: -0.0376 T23: 0.0880 REMARK 3 L TENSOR REMARK 3 L11: 2.0115 L22: 3.4520 REMARK 3 L33: 5.9725 L12: 2.0861 REMARK 3 L13: -5.7989 L23: -1.9152 REMARK 3 S TENSOR REMARK 3 S11: 0.0429 S12: 0.7813 S13: 0.7220 REMARK 3 S21: -0.4492 S22: 0.2254 S23: -0.0022 REMARK 3 S31: -0.4025 S32: -0.3532 S33: -0.2245 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8X6B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-NOV-23. REMARK 100 THE DEPOSITION ID IS D_1300042724. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-SEP-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL02U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979183 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26249 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 57.870 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.40 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.82200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M MAGNESIUM SULFATE HEPTAHYDRATE, REMARK 280 0.1 M MES, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.37100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 40.48700 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 40.48700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 62.05650 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 40.48700 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 40.48700 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 20.68550 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 40.48700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.48700 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 62.05650 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 40.48700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.48700 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 20.68550 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 41.37100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 241 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 258 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B -24 REMARK 465 VAL B -23 REMARK 465 SER B -22 REMARK 465 ALA B -21 REMARK 465 ILE B -20 REMARK 465 VAL B -19 REMARK 465 LEU B -18 REMARK 465 TYR B -17 REMARK 465 VAL B -16 REMARK 465 LEU B -15 REMARK 465 LEU B -14 REMARK 465 ALA B -13 REMARK 465 ALA B -12 REMARK 465 ALA B -11 REMARK 465 ALA B -10 REMARK 465 HIS B -9 REMARK 465 SER B -8 REMARK 465 ALA B -7 REMARK 465 PHE B -6 REMARK 465 ALA B -5 REMARK 465 ALA B -4 REMARK 465 ASP B -3 REMARK 465 GLY B -2 REMARK 465 ILE B -1 REMARK 465 GLN B 0 REMARK 465 ALA B 1 REMARK 465 GLY B 2 REMARK 465 ALA B 14 REMARK 465 THR B 15 REMARK 465 GLU B 16 REMARK 465 LEU B 17 REMARK 465 SER B 18 REMARK 465 SER B 83 REMARK 465 GLY B 84 REMARK 465 ALA B 85 REMARK 465 SER B 86 REMARK 465 SER B 115 REMARK 465 SER B 116 REMARK 465 MET A 1 REMARK 465 GLN A 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA B 45 36.19 -144.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 363 DISTANCE = 7.73 ANGSTROMS REMARK 525 HOH B 364 DISTANCE = 7.99 ANGSTROMS DBREF 8X6B B 1 116 UNP Q6DKI7 PVRIG_HUMAN 39 154 DBREF 8X6B A 2 128 UNP Q92692 NECT2_HUMAN 32 158 SEQADV 8X6B MET B -24 UNP Q6DKI7 INITIATING METHIONINE SEQADV 8X6B VAL B -23 UNP Q6DKI7 EXPRESSION TAG SEQADV 8X6B SER B -22 UNP Q6DKI7 EXPRESSION TAG SEQADV 8X6B ALA B -21 UNP Q6DKI7 EXPRESSION TAG SEQADV 8X6B ILE B -20 UNP Q6DKI7 EXPRESSION TAG SEQADV 8X6B VAL B -19 UNP Q6DKI7 EXPRESSION TAG SEQADV 8X6B LEU B -18 UNP Q6DKI7 EXPRESSION TAG SEQADV 8X6B TYR B -17 UNP Q6DKI7 EXPRESSION TAG SEQADV 8X6B VAL B -16 UNP Q6DKI7 EXPRESSION TAG SEQADV 8X6B LEU B -15 UNP Q6DKI7 EXPRESSION TAG SEQADV 8X6B LEU B -14 UNP Q6DKI7 EXPRESSION TAG SEQADV 8X6B ALA B -13 UNP Q6DKI7 EXPRESSION TAG SEQADV 8X6B ALA B -12 UNP Q6DKI7 EXPRESSION TAG SEQADV 8X6B ALA B -11 UNP Q6DKI7 EXPRESSION TAG SEQADV 8X6B ALA B -10 UNP Q6DKI7 EXPRESSION TAG SEQADV 8X6B HIS B -9 UNP Q6DKI7 EXPRESSION TAG SEQADV 8X6B SER B -8 UNP Q6DKI7 EXPRESSION TAG SEQADV 8X6B ALA B -7 UNP Q6DKI7 EXPRESSION TAG SEQADV 8X6B PHE B -6 UNP Q6DKI7 EXPRESSION TAG SEQADV 8X6B ALA B -5 UNP Q6DKI7 EXPRESSION TAG SEQADV 8X6B ALA B -4 UNP Q6DKI7 EXPRESSION TAG SEQADV 8X6B ASP B -3 UNP Q6DKI7 EXPRESSION TAG SEQADV 8X6B GLY B -2 UNP Q6DKI7 EXPRESSION TAG SEQADV 8X6B ILE B -1 UNP Q6DKI7 EXPRESSION TAG SEQADV 8X6B GLN B 0 UNP Q6DKI7 EXPRESSION TAG SEQADV 8X6B SER B 89 UNP Q6DKI7 CYS 127 ENGINEERED MUTATION SEQADV 8X6B MET A 1 UNP Q92692 INITIATING METHIONINE SEQRES 1 B 141 MET VAL SER ALA ILE VAL LEU TYR VAL LEU LEU ALA ALA SEQRES 2 B 141 ALA ALA HIS SER ALA PHE ALA ALA ASP GLY ILE GLN ALA SEQRES 3 B 141 GLY THR PRO GLU VAL TRP VAL GLN VAL ARG MET GLU ALA SEQRES 4 B 141 THR GLU LEU SER SER PHE THR ILE ARG CYS GLY PHE LEU SEQRES 5 B 141 GLY SER GLY SER ILE SER LEU VAL THR VAL SER TRP GLY SEQRES 6 B 141 GLY PRO ASN GLY ALA GLY GLY THR THR LEU ALA VAL LEU SEQRES 7 B 141 HIS PRO GLU ARG GLY ILE ARG GLN TRP ALA PRO ALA ARG SEQRES 8 B 141 GLN ALA ARG TRP GLU THR GLN SER SER ILE SER LEU ILE SEQRES 9 B 141 LEU GLU GLY SER GLY ALA SER SER PRO SER ALA ASN THR SEQRES 10 B 141 THR PHE CYS CYS LYS PHE ALA SER PHE PRO GLU GLY SER SEQRES 11 B 141 TRP GLU ALA CYS GLY SER LEU PRO PRO SER SER SEQRES 1 A 128 MET GLN ASP VAL ARG VAL GLN VAL LEU PRO GLU VAL ARG SEQRES 2 A 128 GLY GLN LEU GLY GLY THR VAL GLU LEU PRO CYS HIS LEU SEQRES 3 A 128 LEU PRO PRO VAL PRO GLY LEU TYR ILE SER LEU VAL THR SEQRES 4 A 128 TRP GLN ARG PRO ASP ALA PRO ALA ASN HIS GLN ASN VAL SEQRES 5 A 128 ALA ALA PHE HIS PRO LYS MET GLY PRO SER PHE PRO SER SEQRES 6 A 128 PRO LYS PRO GLY SER GLU ARG LEU SER PHE VAL SER ALA SEQRES 7 A 128 LYS GLN SER THR GLY GLN ASP THR GLU ALA GLU LEU GLN SEQRES 8 A 128 ASP ALA THR LEU ALA LEU HIS GLY LEU THR VAL GLU ASP SEQRES 9 A 128 GLU GLY ASN TYR THR CYS GLU PHE ALA THR PHE PRO LYS SEQRES 10 A 128 GLY SER VAL ARG GLY MET THR TRP LEU ARG VAL HET NAG B 201 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG C8 H15 N O6 FORMUL 4 HOH *122(H2 O) HELIX 1 AA1 PRO A 46 HIS A 49 5 4 HELIX 2 AA2 THR A 101 GLU A 105 5 5 SHEET 1 AA1 4 GLU B 5 ARG B 11 0 SHEET 2 AA1 4 PHE B 20 LEU B 27 -1 O LEU B 27 N GLU B 5 SHEET 3 AA1 4 SER B 75 LEU B 80 -1 O LEU B 78 N ILE B 22 SHEET 4 AA1 4 ALA B 65 THR B 72 -1 N ARG B 66 O ILE B 79 SHEET 1 AA2 5 GLY B 58 GLN B 61 0 SHEET 2 AA2 5 THR B 48 HIS B 54 -1 N HIS B 54 O GLY B 58 SHEET 3 AA2 5 ILE B 32 TRP B 39 -1 N VAL B 37 O LEU B 50 SHEET 4 AA2 5 PHE B 94 SER B 100 -1 O ALA B 99 N SER B 33 SHEET 5 AA2 5 GLY B 104 GLY B 110 -1 O TRP B 106 N PHE B 98 SHEET 1 AA3 2 VAL A 6 VAL A 8 0 SHEET 2 AA3 2 CYS A 24 LEU A 26 -1 O HIS A 25 N GLN A 7 SHEET 1 AA4 6 GLU A 11 ARG A 13 0 SHEET 2 AA4 6 GLY A 118 ARG A 127 1 O ARG A 127 N VAL A 12 SHEET 3 AA4 6 GLY A 106 THR A 114 -1 N TYR A 108 O THR A 124 SHEET 4 AA4 6 ILE A 35 GLN A 41 -1 N GLN A 41 O THR A 109 SHEET 5 AA4 6 ASN A 51 HIS A 56 -1 O ALA A 53 N TRP A 40 SHEET 6 AA4 6 GLY A 60 SER A 62 -1 O SER A 62 N ALA A 54 SHEET 1 AA5 3 VAL A 20 LEU A 22 0 SHEET 2 AA5 3 LEU A 95 LEU A 97 -1 O LEU A 95 N LEU A 22 SHEET 3 AA5 3 LEU A 73 PHE A 75 -1 N SER A 74 O ALA A 96 SSBOND 1 CYS B 24 CYS B 96 1555 1555 2.03 SSBOND 2 CYS B 95 CYS B 109 1555 1555 2.05 SSBOND 3 CYS A 24 CYS A 110 1555 1555 2.02 LINK ND2 ASN B 91 C1 NAG B 201 1555 1555 1.44 CISPEP 1 PHE B 101 PRO B 102 0 6.02 CRYST1 80.974 80.974 82.742 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012350 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012350 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012086 0.00000