HEADER CYTOSOLIC PROTEIN 24-NOV-23 8X7G TITLE CRYSTAL STRUCTURE OF THE TERNARY COMPLEX OF GID4-PROTAC(NEP108)- TITLE 2 BRD4(BD1). COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOSE-INDUCED DEGRADATION PROTEIN 4 HOMOLOG; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: VACUOLAR IMPORT AND DEGRADATION PROTEIN 24 HOMOLOG; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: BROMODOMAIN-CONTAINING PROTEIN 4; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: PROTEIN HUNK1; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GID4, C17ORF39, VID24; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: BRD4, HUNK1; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTAC, CYTOSOLIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.DONG,X.YAN,Y.LI REVDAT 2 08-OCT-25 8X7G 1 JRNL REVDAT 1 26-MAR-25 8X7G 0 JRNL AUTH Y.LI,K.BAO,J.SUN,R.GE,Q.ZHANG,B.ZHANG,X.YAN,J.LI,F.SHI, JRNL AUTH 2 M.ZHANG,J.ZANG,M.LIU,J.ZHOU,W.MI,S.XIE,D.CHEN,L.SHI,C.DONG JRNL TITL DESIGN OF PROTACS UTILIZING THE E3 LIGASE GID4 FOR TARGETED JRNL TITL 2 PROTEIN DEGRADATION. JRNL REF NAT.STRUCT.MOL.BIOL. V. 32 1825 2025 JRNL REFN ESSN 1545-9985 JRNL PMID 40295770 JRNL DOI 10.1038/S41594-025-01537-1 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.77 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 18613 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 927 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.7700 - 5.1600 1.00 2530 127 0.2370 0.2774 REMARK 3 2 5.1500 - 4.0900 1.00 2526 143 0.1934 0.2253 REMARK 3 3 4.0900 - 3.5800 1.00 2521 129 0.2017 0.2509 REMARK 3 4 3.5800 - 3.2500 1.00 2556 129 0.2269 0.2924 REMARK 3 5 3.2500 - 3.0200 1.00 2520 140 0.2479 0.2665 REMARK 3 6 3.0200 - 2.8400 1.00 2551 119 0.2408 0.3224 REMARK 3 7 2.8400 - 2.7000 1.00 2482 140 0.2739 0.3376 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.400 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.470 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 226 REMARK 3 ANGLE : 1.039 308 REMARK 3 CHIRALITY : 0.050 319 REMARK 3 PLANARITY : 0.006 387 REMARK 3 DIHEDRAL : 9.754 307 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8X7G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-NOV-23. REMARK 100 THE DEPOSITION ID IS D_1300042805. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAR-23 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL10U2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979183 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18613 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 11.60 REMARK 200 R MERGE (I) : 0.15400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.0400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.72580 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS PH 6.5, 25% (V/V) REMARK 280 POLYETHYLENE GLYCOL 300, 30% (V/V) GALACTOSE, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 44.72000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.70100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.72000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.70100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 123 REMARK 465 GLY A 163 REMARK 465 LEU A 164 REMARK 465 THR A 165 REMARK 465 GLU A 166 REMARK 465 GLU A 167 REMARK 465 TYR A 168 REMARK 465 GLY B 43 REMARK 465 ASN B 44 REMARK 465 PRO B 46 REMARK 465 ASN B 52 REMARK 465 PRO B 53 REMARK 465 ASN B 54 REMARK 465 LYS B 55 REMARK 465 PRO B 56 REMARK 465 LYS B 57 REMARK 465 ARG B 58 REMARK 465 GLN B 59 REMARK 465 THR B 60 REMARK 465 ASN B 61 REMARK 465 GLN B 62 REMARK 465 GLU B 167 REMARK 465 GLU B 168 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 135 CG CD CE NZ REMARK 470 ILE A 161 CG1 CG2 CD1 REMARK 470 LYS A 162 CG CD CE NZ REMARK 470 LYS A 182 CG CD CE NZ REMARK 470 LYS A 190 CG CD CE NZ REMARK 470 LYS A 200 CG CD CE NZ REMARK 470 LYS A 204 CD CE NZ REMARK 470 LYS A 213 CG CD CE NZ REMARK 470 SER A 214 OG REMARK 470 SER A 217 OG REMARK 470 ASP A 218 CG OD1 OD2 REMARK 470 ASP A 219 CG OD1 OD2 REMARK 470 GLU A 223 CG CD OE1 OE2 REMARK 470 GLU A 224 CG CD OE1 OE2 REMARK 470 LYS A 226 CG CD CE NZ REMARK 470 ASN A 227 CG OD1 ND2 REMARK 470 ASP A 243 CG OD1 OD2 REMARK 470 HIS A 244 CG ND1 CD2 CE1 NE2 REMARK 470 ILE A 246 CG1 CG2 CD1 REMARK 470 LYS A 247 CE NZ REMARK 470 LYS A 264 CD CE NZ REMARK 470 ARG A 276 CG CD NE CZ NH1 NH2 REMARK 470 SER A 277 OG REMARK 470 PRO B 45 CG CD REMARK 470 PRO B 47 CG CD REMARK 470 PRO B 48 CG CD REMARK 470 GLU B 49 CG CD OE1 OE2 REMARK 470 THR B 50 OG1 CG2 REMARK 470 SER B 51 OG REMARK 470 GLN B 64 CG CD OE1 NE2 REMARK 470 VAL B 70 CG1 CG2 REMARK 470 LYS B 72 CG CD CE NZ REMARK 470 LYS B 99 CG CD CE NZ REMARK 470 LYS B 102 CG CD CE NZ REMARK 470 LYS B 111 CG CD CE NZ REMARK 470 ASN B 121 CG OD1 ND2 REMARK 470 GLN B 123 CG CD OE1 NE2 REMARK 470 LYS B 160 CG CD CE NZ REMARK 470 GLU B 163 CG CD OE1 OE2 REMARK 470 PRO B 165 CG CD REMARK 470 THR B 166 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 45 N - CA - CB ANGL. DEV. = 7.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 134 -167.89 -100.71 REMARK 500 ASP A 219 57.72 -113.82 REMARK 500 SER A 253 -9.45 -57.04 REMARK 500 PHE A 254 28.37 -145.50 REMARK 500 SER A 277 39.49 -84.79 REMARK 500 PRO B 165 151.63 -49.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 209 DISTANCE = 6.65 ANGSTROMS REMARK 525 HOH B 210 DISTANCE = 6.68 ANGSTROMS REMARK 525 HOH B 211 DISTANCE = 13.58 ANGSTROMS DBREF 8X7G A 124 289 UNP Q8IVV7 GID4_HUMAN 124 289 DBREF 8X7G B 44 168 UNP O60885 BRD4_HUMAN 44 168 SEQADV 8X7G GLY A 123 UNP Q8IVV7 EXPRESSION TAG SEQADV 8X7G GLY B 43 UNP O60885 EXPRESSION TAG SEQRES 1 A 167 GLY SER GLY SER LYS PHE ARG GLY HIS GLN LYS SER LYS SEQRES 2 A 167 GLY ASN SER TYR ASP VAL GLU VAL VAL LEU GLN HIS VAL SEQRES 3 A 167 ASP THR GLY ASN SER TYR LEU CYS GLY TYR LEU LYS ILE SEQRES 4 A 167 LYS GLY LEU THR GLU GLU TYR PRO THR LEU THR THR PHE SEQRES 5 A 167 PHE GLU GLY GLU ILE ILE SER LYS LYS HIS PRO PHE LEU SEQRES 6 A 167 THR ARG LYS TRP ASP ALA ASP GLU ASP VAL ASP ARG LYS SEQRES 7 A 167 HIS TRP GLY LYS PHE LEU ALA PHE TYR GLN TYR ALA LYS SEQRES 8 A 167 SER PHE ASN SER ASP ASP PHE ASP TYR GLU GLU LEU LYS SEQRES 9 A 167 ASN GLY ASP TYR VAL PHE MET ARG TRP LYS GLU GLN PHE SEQRES 10 A 167 LEU VAL PRO ASP HIS THR ILE LYS ASP ILE SER GLY ALA SEQRES 11 A 167 SER PHE ALA GLY PHE TYR TYR ILE CYS PHE GLN LYS SER SEQRES 12 A 167 ALA ALA SER ILE GLU GLY TYR TYR TYR HIS ARG SER SER SEQRES 13 A 167 GLU TRP TYR GLN SER LEU ASN LEU THR HIS VAL SEQRES 1 B 126 GLY ASN PRO PRO PRO PRO GLU THR SER ASN PRO ASN LYS SEQRES 2 B 126 PRO LYS ARG GLN THR ASN GLN LEU GLN TYR LEU LEU ARG SEQRES 3 B 126 VAL VAL LEU LYS THR LEU TRP LYS HIS GLN PHE ALA TRP SEQRES 4 B 126 PRO PHE GLN GLN PRO VAL ASP ALA VAL LYS LEU ASN LEU SEQRES 5 B 126 PRO ASP TYR TYR LYS ILE ILE LYS THR PRO MET ASP MET SEQRES 6 B 126 GLY THR ILE LYS LYS ARG LEU GLU ASN ASN TYR TYR TRP SEQRES 7 B 126 ASN ALA GLN GLU CYS ILE GLN ASP PHE ASN THR MET PHE SEQRES 8 B 126 THR ASN CYS TYR ILE TYR ASN LYS PRO GLY ASP ASP ILE SEQRES 9 B 126 VAL LEU MET ALA GLU ALA LEU GLU LYS LEU PHE LEU GLN SEQRES 10 B 126 LYS ILE ASN GLU LEU PRO THR GLU GLU HET YAX A 301 114 HETNAM YAX 2-[(9~{S})-7-(4-CHLOROPHENYL)-4,5,13-TRIMETHYL-3-THIA- HETNAM 2 YAX 1,8,11,12-TETRAZATRICYCLO[8.3.0.0^{2,6}]TRIDECA-2(6), HETNAM 3 YAX 4,7,10,12-PENTAEN-9-YL]-~{N}-[2-[2-[[2-[4-[2-(1~{H}- HETNAM 4 YAX INDOL-2-YLMETHYLAMINO)ETHANOYLAMINO]CYCLOHEXYL]-3~{H}- HETNAM 5 YAX BENZIMIDAZOL-5-YL]OXY]ETHOXY]ETHYL]ETHANAMIDE FORMUL 3 YAX C47 H51 CL N10 O4 S FORMUL 4 HOH *21(H2 O) HELIX 1 AA1 ASP A 194 LYS A 204 1 11 HELIX 2 AA2 PHE A 205 ALA A 212 5 8 HELIX 3 AA3 TYR A 222 ASN A 227 1 6 HELIX 4 AA4 GLN B 64 VAL B 69 1 6 HELIX 5 AA5 VAL B 69 HIS B 77 1 9 HELIX 6 AA6 ALA B 80 GLN B 84 5 5 HELIX 7 AA7 ASP B 88 ASN B 93 1 6 HELIX 8 AA8 ASP B 96 ILE B 101 1 6 HELIX 9 AA9 ASP B 106 ASN B 116 1 11 HELIX 10 AB1 ASN B 121 ASN B 140 1 20 HELIX 11 AB2 ASP B 144 ASN B 162 1 19 SHEET 1 AA1 9 SER A 126 LYS A 133 0 SHEET 2 AA1 9 SER A 138 ASP A 149 -1 O LEU A 145 N SER A 126 SHEET 3 AA1 9 TYR A 154 ILE A 161 -1 O TYR A 154 N ASP A 149 SHEET 4 AA1 9 LEU A 171 ILE A 179 -1 O PHE A 175 N GLY A 157 SHEET 5 AA1 9 TYR A 230 LEU A 240 -1 O GLN A 238 N PHE A 174 SHEET 6 AA1 9 PHE A 257 GLN A 263 -1 O ILE A 260 N MET A 233 SHEET 7 AA1 9 SER A 268 TYR A 274 -1 O TYR A 274 N PHE A 257 SHEET 8 AA1 9 GLN A 282 HIS A 288 -1 O LEU A 286 N ILE A 269 SHEET 9 AA1 9 SER A 126 LYS A 133 -1 N HIS A 131 O ASN A 285 CISPEP 1 VAL A 241 PRO A 242 0 -0.95 CRYST1 89.440 97.402 40.080 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011181 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010267 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024950 0.00000 CONECT 2133 2134 2151 2196 CONECT 2134 2133 2135 2197 2198 CONECT 2135 2134 2189 2193 CONECT 2136 2138 2180 2189 2199 CONECT 2137 2146 2180 2200 2201 CONECT 2138 2136 2147 2202 2203 CONECT 2139 2142 2149 2182 CONECT 2140 2141 2150 2190 CONECT 2141 2140 2142 2204 CONECT 2142 2139 2141 2205 CONECT 2143 2152 2190 2206 2207 CONECT 2144 2153 2183 2208 2209 CONECT 2145 2151 2156 2184 CONECT 2146 2137 2147 2148 2210 CONECT 2147 2138 2146 2211 2212 CONECT 2148 2146 2181 2182 CONECT 2149 2139 2150 2181 CONECT 2150 2140 2149 2213 CONECT 2151 2133 2145 2214 2215 CONECT 2152 2143 2191 2216 2217 CONECT 2153 2144 2191 2218 2219 CONECT 2154 2155 2157 2184 CONECT 2155 2154 2156 2160 CONECT 2156 2145 2155 2220 CONECT 2157 2154 2158 2221 CONECT 2158 2157 2159 2222 CONECT 2159 2158 2160 2223 CONECT 2160 2155 2159 2224 CONECT 2161 2162 2185 2188 CONECT 2162 2161 2170 2186 2225 CONECT 2163 2164 2174 2186 CONECT 2164 2163 2165 2167 CONECT 2165 2164 2185 2194 CONECT 2166 2171 2185 2187 CONECT 2167 2164 2168 2172 CONECT 2168 2167 2173 2194 CONECT 2169 2170 2183 2192 CONECT 2170 2162 2169 2226 2227 CONECT 2171 2166 2228 2229 2230 CONECT 2172 2167 2231 2232 2233 CONECT 2173 2168 2234 2235 2236 CONECT 2174 2163 2175 2179 CONECT 2175 2174 2176 2237 CONECT 2176 2175 2177 2238 CONECT 2177 2176 2178 2195 CONECT 2178 2177 2179 2239 CONECT 2179 2174 2178 2240 CONECT 2180 2136 2137 2241 2242 CONECT 2181 2148 2149 2243 CONECT 2182 2139 2148 CONECT 2183 2144 2169 2244 CONECT 2184 2145 2154 2245 CONECT 2185 2161 2165 2166 CONECT 2186 2162 2163 CONECT 2187 2166 2188 CONECT 2188 2161 2187 CONECT 2189 2135 2136 2246 CONECT 2190 2140 2143 CONECT 2191 2152 2153 CONECT 2192 2169 CONECT 2193 2135 CONECT 2194 2165 2168 CONECT 2195 2177 CONECT 2196 2133 CONECT 2197 2134 CONECT 2198 2134 CONECT 2199 2136 CONECT 2200 2137 CONECT 2201 2137 CONECT 2202 2138 CONECT 2203 2138 CONECT 2204 2141 CONECT 2205 2142 CONECT 2206 2143 CONECT 2207 2143 CONECT 2208 2144 CONECT 2209 2144 CONECT 2210 2146 CONECT 2211 2147 CONECT 2212 2147 CONECT 2213 2150 CONECT 2214 2151 CONECT 2215 2151 CONECT 2216 2152 CONECT 2217 2152 CONECT 2218 2153 CONECT 2219 2153 CONECT 2220 2156 CONECT 2221 2157 CONECT 2222 2158 CONECT 2223 2159 CONECT 2224 2160 CONECT 2225 2162 CONECT 2226 2170 CONECT 2227 2170 CONECT 2228 2171 CONECT 2229 2171 CONECT 2230 2171 CONECT 2231 2172 CONECT 2232 2172 CONECT 2233 2172 CONECT 2234 2173 CONECT 2235 2173 CONECT 2236 2173 CONECT 2237 2175 CONECT 2238 2176 CONECT 2239 2178 CONECT 2240 2179 CONECT 2241 2180 CONECT 2242 2180 CONECT 2243 2181 CONECT 2244 2183 CONECT 2245 2184 CONECT 2246 2189 MASTER 328 0 1 11 9 0 0 6 2214 2 114 23 END