HEADER HYDROLASE/DNA 03-DEC-23 8XA9 TITLE HUMAN MGME1 IN COMPLEX WITH 5'-OVERHANG DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: MITOCHONDRIAL GENOME MAINTENANCE EXONUCLEASE 1; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (18-MER); COMPND 7 CHAIN: C, E; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DNA (11-MER); COMPND 11 CHAIN: D, F; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MGME1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PSOL SUMO; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 18 ORGANISM_TAXID: 32630 KEYWDS EXONUCLEASE, HYDROLASE, HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.C.WU,E.Y.C.MAO REVDAT 2 08-MAY-24 8XA9 1 JRNL REVDAT 1 20-MAR-24 8XA9 0 JRNL AUTH E.Y.C.MAO,H.Y.YEN,C.C.WU JRNL TITL STRUCTURAL BASIS OF HOW MGME1 PROCESSES DNA 5' ENDS TO JRNL TITL 2 MAINTAIN MITOCHONDRIAL GENOME INTEGRITY. JRNL REF NUCLEIC ACIDS RES. V. 52 4067 2024 JRNL REFN ESSN 1362-4962 JRNL PMID 38471810 JRNL DOI 10.1093/NAR/GKAE186 REMARK 2 REMARK 2 RESOLUTION. 2.32 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.32 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.46 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 3 NUMBER OF REFLECTIONS : 43703 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.259 REMARK 3 R VALUE (WORKING SET) : 0.258 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 2162 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.4600 - 5.7000 0.97 2934 170 0.2526 0.3102 REMARK 3 2 5.7000 - 4.5300 0.99 2918 171 0.2249 0.2485 REMARK 3 3 4.5300 - 3.9600 0.99 2930 139 0.2084 0.2142 REMARK 3 4 3.9600 - 3.6000 0.98 2885 157 0.2355 0.2294 REMARK 3 5 3.6000 - 3.3400 0.97 2825 137 0.2621 0.2563 REMARK 3 6 3.3400 - 3.1500 0.97 2861 120 0.2820 0.3277 REMARK 3 7 3.1500 - 2.9900 0.96 2836 141 0.2939 0.3279 REMARK 3 8 2.9900 - 2.8600 0.96 2783 156 0.3113 0.3208 REMARK 3 9 2.8600 - 2.7500 0.96 2791 144 0.2983 0.3022 REMARK 3 10 2.7500 - 2.6600 0.95 2750 140 0.3002 0.3637 REMARK 3 11 2.6600 - 2.5700 0.95 2756 147 0.2948 0.3074 REMARK 3 12 2.5700 - 2.5000 0.94 2744 148 0.3044 0.3148 REMARK 3 13 2.5000 - 2.4300 0.95 2748 154 0.3190 0.3333 REMARK 3 14 2.4300 - 2.3700 0.95 2773 136 0.3179 0.3272 REMARK 3 15 2.3700 - 2.3200 0.70 2007 102 0.3520 0.3630 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.282 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.009 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 48.47 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 4064 REMARK 3 ANGLE : 0.616 5648 REMARK 3 CHIRALITY : 0.039 641 REMARK 3 PLANARITY : 0.004 623 REMARK 3 DIHEDRAL : 19.585 1475 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8XA9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-DEC-23. REMARK 100 THE DEPOSITION ID IS D_1300039023. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUN-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL15A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : LN2-COOLED, FIXED-EXIT DOUBLE REMARK 200 CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43737 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.320 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, SODIUM CITRATE/CITRIC ACID, REMARK 280 SODIUM TRIBASIC, TRIS-HYDROCHLORIDE, SODIUM CHLORIDE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 90.37800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.09650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 90.37800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 28.09650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 94 REMARK 465 GLU A 107 REMARK 465 ARG A 108 REMARK 465 SER A 109 REMARK 465 ASP A 110 REMARK 465 LYS A 111 REMARK 465 PRO A 112 REMARK 465 ASN A 113 REMARK 465 ALA A 114 REMARK 465 SER A 115 REMARK 465 ASP A 116 REMARK 465 PRO A 117 REMARK 465 SER A 118 REMARK 465 PRO A 189 REMARK 465 GLN A 190 REMARK 465 GLU A 191 REMARK 465 THR A 192 REMARK 465 LEU A 193 REMARK 465 LYS A 194 REMARK 465 GLU A 195 REMARK 465 ARG A 196 REMARK 465 ASP A 197 REMARK 465 GLU A 198 REMARK 465 ASN A 199 REMARK 465 LEU A 200 REMARK 465 LEU A 201 REMARK 465 LYS A 202 REMARK 465 GLN A 335 REMARK 465 ASN A 336 REMARK 465 ILE A 337 REMARK 465 GLN A 338 REMARK 465 LYS A 339 REMARK 465 PRO A 340 REMARK 465 GLU A 341 REMARK 465 TYR A 342 REMARK 465 SER A 343 REMARK 465 GLU A 344 REMARK 465 GLY B 94 REMARK 465 PRO B 106 REMARK 465 GLU B 107 REMARK 465 ARG B 108 REMARK 465 SER B 109 REMARK 465 ASP B 110 REMARK 465 LYS B 111 REMARK 465 PRO B 112 REMARK 465 ASN B 113 REMARK 465 ALA B 114 REMARK 465 SER B 115 REMARK 465 ASP B 116 REMARK 465 PRO B 117 REMARK 465 SER B 118 REMARK 465 VAL B 119 REMARK 465 GLN B 190 REMARK 465 GLU B 191 REMARK 465 THR B 192 REMARK 465 LEU B 193 REMARK 465 LYS B 194 REMARK 465 GLU B 195 REMARK 465 ARG B 196 REMARK 465 ASP B 197 REMARK 465 GLU B 198 REMARK 465 ASN B 199 REMARK 465 LEU B 200 REMARK 465 LEU B 201 REMARK 465 LYS B 202 REMARK 465 ASN B 336 REMARK 465 ILE B 337 REMARK 465 GLN B 338 REMARK 465 LYS B 339 REMARK 465 PRO B 340 REMARK 465 GLU B 341 REMARK 465 TYR B 342 REMARK 465 SER B 343 REMARK 465 GLU B 344 REMARK 465 DG C 12 REMARK 465 DC C 13 REMARK 465 DG C 14 REMARK 465 DG C 15 REMARK 465 DT C 16 REMARK 465 DC C 17 REMARK 465 DG C 18 REMARK 465 DC D 1 REMARK 465 DG D 2 REMARK 465 DA D 3 REMARK 465 DC D 4 REMARK 465 DC D 5 REMARK 465 DG D 6 REMARK 465 DC D 7 REMARK 465 DG E 11 REMARK 465 DG E 12 REMARK 465 DC E 13 REMARK 465 DG E 14 REMARK 465 DG E 15 REMARK 465 DT E 16 REMARK 465 DC E 17 REMARK 465 DG E 18 REMARK 465 DC F 1 REMARK 465 DG F 2 REMARK 465 DA F 3 REMARK 465 DC F 4 REMARK 465 DC F 5 REMARK 465 DG F 6 REMARK 465 DC F 7 REMARK 465 DC F 8 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 95 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 105 CG OD1 ND2 REMARK 470 LYS A 143 CG CD CE NZ REMARK 470 GLN A 144 CG CD OE1 NE2 REMARK 470 GLU A 150 CG CD OE1 OE2 REMARK 470 ARG A 151 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 153 CG CD CE NZ REMARK 470 GLN A 154 CG CD OE1 NE2 REMARK 470 ARG A 155 CG CD NE CZ NH1 NH2 REMARK 470 MET A 156 CG SD CE REMARK 470 ILE A 157 CG1 CG2 CD1 REMARK 470 LEU A 158 CG CD1 CD2 REMARK 470 GLU A 159 CG CD OE1 OE2 REMARK 470 LEU A 160 CG CD1 CD2 REMARK 470 GLU A 162 CG CD OE1 OE2 REMARK 470 ASP A 163 CG OD1 OD2 REMARK 470 PHE A 165 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 166 CG CD CE NZ REMARK 470 GLU A 167 CG CD OE1 OE2 REMARK 470 SER A 170 OG REMARK 470 LEU A 174 CG CD1 CD2 REMARK 470 LYS A 177 CG CD CE NZ REMARK 470 ARG A 178 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 207 CG CD OE1 OE2 REMARK 470 GLU A 229 CG CD OE1 OE2 REMARK 470 GLU A 256 CG CD OE1 OE2 REMARK 470 LYS A 257 CG CD CE NZ REMARK 470 GLN A 288 CG CD OE1 NE2 REMARK 470 LYS A 299 CG CD CE NZ REMARK 470 GLU A 330 CG CD OE1 OE2 REMARK 470 LYS A 333 CG CD CE NZ REMARK 470 ASN A 334 CG OD1 ND2 REMARK 470 ARG B 95 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 98 CG CD OE1 NE2 REMARK 470 ASN B 105 CG OD1 ND2 REMARK 470 GLU B 167 CG CD OE1 OE2 REMARK 470 ARG B 178 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 256 CG CD OE1 OE2 REMARK 470 LYS B 257 CG CD CE NZ REMARK 470 GLN B 288 CG CD OE1 NE2 REMARK 470 LYS B 332 CG CD CE NZ REMARK 470 LYS B 333 CG CD CE NZ REMARK 470 ASN B 334 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 160 -1.20 -143.72 REMARK 500 GLU A 223 47.78 37.76 REMARK 500 LYS A 253 148.36 -175.09 REMARK 500 PHE A 266 -116.42 58.27 REMARK 500 ASN B 99 72.80 -113.85 REMARK 500 SER B 217 -179.88 -170.63 REMARK 500 ASN B 232 61.68 64.68 REMARK 500 PHE B 266 -117.51 54.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 238 OD2 REMARK 620 2 ASP A 251 OD1 83.3 REMARK 620 3 TRP A 252 O 97.7 73.4 REMARK 620 4 DT E 4 OP1 108.2 118.2 152.4 REMARK 620 5 HOH E 201 O 173.6 90.4 79.8 75.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA E 101 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 238 OD1 REMARK 620 2 HOH A 512 O 85.3 REMARK 620 3 HOH A 517 O 96.0 75.9 REMARK 620 4 DT E 3 O3' 159.9 109.2 100.9 REMARK 620 5 DT E 4 OP1 99.8 161.8 120.4 62.2 REMARK 620 6 HOH E 204 O 90.9 90.9 164.5 75.4 71.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 238 OD2 REMARK 620 2 ASP B 251 OD1 86.7 REMARK 620 3 TRP B 252 O 99.3 79.1 REMARK 620 4 HOH B 522 O 167.5 80.8 77.7 REMARK 620 5 DT C 4 OP1 107.0 112.6 151.6 78.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 101 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 238 OD1 REMARK 620 2 HOH B 529 O 85.8 REMARK 620 3 HOH B 534 O 101.4 158.0 REMARK 620 4 HOH B 537 O 92.1 84.0 75.1 REMARK 620 5 DT C 3 O3' 162.1 86.4 91.7 103.1 REMARK 620 6 DT C 4 OP1 101.6 84.0 114.3 161.0 61.5 REMARK 620 N 1 2 3 4 5 DBREF 8XA9 A 95 344 UNP Q9BQP7 MGME1_HUMAN 95 344 DBREF 8XA9 B 95 344 UNP Q9BQP7 MGME1_HUMAN 95 344 DBREF 8XA9 C 1 18 PDB 8XA9 8XA9 1 18 DBREF 8XA9 D 1 11 PDB 8XA9 8XA9 1 11 DBREF 8XA9 E 1 18 PDB 8XA9 8XA9 1 18 DBREF 8XA9 F 1 11 PDB 8XA9 8XA9 1 11 SEQADV 8XA9 GLY A 94 UNP Q9BQP7 EXPRESSION TAG SEQADV 8XA9 GLY B 94 UNP Q9BQP7 EXPRESSION TAG SEQRES 1 A 251 GLY ARG VAL PRO GLN ASN TRP PHE PRO ILE PHE ASN PRO SEQRES 2 A 251 GLU ARG SER ASP LYS PRO ASN ALA SER ASP PRO SER VAL SEQRES 3 A 251 PRO LEU LYS ILE PRO LEU GLN ARG ASN VAL ILE PRO SER SEQRES 4 A 251 VAL THR ARG VAL LEU GLN GLN THR MET THR LYS GLN GLN SEQRES 5 A 251 VAL PHE LEU LEU GLU ARG TRP LYS GLN ARG MET ILE LEU SEQRES 6 A 251 GLU LEU GLY GLU ASP GLY PHE LYS GLU TYR THR SER ASN SEQRES 7 A 251 VAL PHE LEU GLN GLY LYS ARG PHE HIS GLU ALA LEU GLU SEQRES 8 A 251 SER ILE LEU SER PRO GLN GLU THR LEU LYS GLU ARG ASP SEQRES 9 A 251 GLU ASN LEU LEU LYS SER GLY TYR ILE GLU SER VAL GLN SEQRES 10 A 251 HIS ILE LEU LYS ASP VAL SER GLY VAL ARG ALA LEU GLU SEQRES 11 A 251 SER ALA VAL GLN HIS GLU THR LEU ASN TYR ILE GLY LEU SEQRES 12 A 251 LEU ASP CYS VAL ALA GLU TYR GLN GLY LYS LEU CYS VAL SEQRES 13 A 251 ILE ASP TRP LYS THR SER GLU LYS PRO LYS PRO PHE ILE SEQRES 14 A 251 GLN SER THR PHE ASP ASN PRO LEU GLN VAL VAL ALA TYR SEQRES 15 A 251 MET GLY ALA MET ASN HIS ASP THR ASN TYR SER PHE GLN SEQRES 16 A 251 VAL GLN CYS GLY LEU ILE VAL VAL ALA TYR LYS ASP GLY SEQRES 17 A 251 SER PRO ALA HIS PRO HIS PHE MET ASP ALA GLU LEU CYS SEQRES 18 A 251 SER GLN TYR TRP THR LYS TRP LEU LEU ARG LEU GLU GLU SEQRES 19 A 251 TYR THR GLU LYS LYS LYS ASN GLN ASN ILE GLN LYS PRO SEQRES 20 A 251 GLU TYR SER GLU SEQRES 1 B 251 GLY ARG VAL PRO GLN ASN TRP PHE PRO ILE PHE ASN PRO SEQRES 2 B 251 GLU ARG SER ASP LYS PRO ASN ALA SER ASP PRO SER VAL SEQRES 3 B 251 PRO LEU LYS ILE PRO LEU GLN ARG ASN VAL ILE PRO SER SEQRES 4 B 251 VAL THR ARG VAL LEU GLN GLN THR MET THR LYS GLN GLN SEQRES 5 B 251 VAL PHE LEU LEU GLU ARG TRP LYS GLN ARG MET ILE LEU SEQRES 6 B 251 GLU LEU GLY GLU ASP GLY PHE LYS GLU TYR THR SER ASN SEQRES 7 B 251 VAL PHE LEU GLN GLY LYS ARG PHE HIS GLU ALA LEU GLU SEQRES 8 B 251 SER ILE LEU SER PRO GLN GLU THR LEU LYS GLU ARG ASP SEQRES 9 B 251 GLU ASN LEU LEU LYS SER GLY TYR ILE GLU SER VAL GLN SEQRES 10 B 251 HIS ILE LEU LYS ASP VAL SER GLY VAL ARG ALA LEU GLU SEQRES 11 B 251 SER ALA VAL GLN HIS GLU THR LEU ASN TYR ILE GLY LEU SEQRES 12 B 251 LEU ASP CYS VAL ALA GLU TYR GLN GLY LYS LEU CYS VAL SEQRES 13 B 251 ILE ASP TRP LYS THR SER GLU LYS PRO LYS PRO PHE ILE SEQRES 14 B 251 GLN SER THR PHE ASP ASN PRO LEU GLN VAL VAL ALA TYR SEQRES 15 B 251 MET GLY ALA MET ASN HIS ASP THR ASN TYR SER PHE GLN SEQRES 16 B 251 VAL GLN CYS GLY LEU ILE VAL VAL ALA TYR LYS ASP GLY SEQRES 17 B 251 SER PRO ALA HIS PRO HIS PHE MET ASP ALA GLU LEU CYS SEQRES 18 B 251 SER GLN TYR TRP THR LYS TRP LEU LEU ARG LEU GLU GLU SEQRES 19 B 251 TYR THR GLU LYS LYS LYS ASN GLN ASN ILE GLN LYS PRO SEQRES 20 B 251 GLU TYR SER GLU SEQRES 1 C 18 DT DT DT DT DT DT DT DG DC DT DG DG DC SEQRES 2 C 18 DG DG DT DC DG SEQRES 1 D 11 DC DG DA DC DC DG DC DC DA DG DC SEQRES 1 E 18 DT DT DT DT DT DT DT DG DC DT DG DG DC SEQRES 2 E 18 DG DG DT DC DG SEQRES 1 F 11 DC DG DA DC DC DG DC DC DA DG DC HET CA A 401 1 HET CA B 401 1 HET CA C 101 1 HET CA E 101 1 HETNAM CA CALCIUM ION FORMUL 7 CA 4(CA 2+) FORMUL 11 HOH *70(H2 O) HELIX 1 AA1 LEU A 125 ILE A 130 1 6 HELIX 2 AA2 SER A 132 GLN A 139 1 8 HELIX 3 AA3 THR A 142 LEU A 187 1 46 HELIX 4 AA4 GLY A 204 LYS A 214 1 11 HELIX 5 AA5 PHE A 261 PHE A 266 5 6 HELIX 6 AA6 ASP A 267 ASN A 280 1 14 HELIX 7 AA7 ASP A 310 ASN A 334 1 25 HELIX 8 AA8 LEU B 125 ILE B 130 1 6 HELIX 9 AA9 SER B 132 GLN B 139 1 8 HELIX 10 AB1 THR B 142 SER B 188 1 47 HELIX 11 AB2 GLY B 204 VAL B 209 1 6 HELIX 12 AB3 VAL B 209 LYS B 214 1 6 HELIX 13 AB4 PHE B 261 PHE B 266 5 6 HELIX 14 AB5 ASP B 267 ASN B 280 1 14 HELIX 15 AB6 ASP B 310 GLN B 335 1 26 SHEET 1 AA1 5 VAL A 216 GLN A 227 0 SHEET 2 AA1 5 ILE A 234 TYR A 243 -1 O GLU A 242 N SER A 217 SHEET 3 AA1 5 LYS A 246 THR A 254 -1 O ILE A 250 N CYS A 239 SHEET 4 AA1 5 CYS A 291 ALA A 297 1 O LEU A 293 N ASP A 251 SHEET 5 AA1 5 HIS A 305 MET A 309 -1 O HIS A 307 N ILE A 294 SHEET 1 AA2 5 VAL B 216 HIS B 228 0 SHEET 2 AA2 5 TYR B 233 TYR B 243 -1 O VAL B 240 N ARG B 220 SHEET 3 AA2 5 LYS B 246 SER B 255 -1 O ILE B 250 N CYS B 239 SHEET 4 AA2 5 CYS B 291 TYR B 298 1 O ALA B 297 N LYS B 253 SHEET 5 AA2 5 HIS B 305 MET B 309 -1 O MET B 309 N GLY B 292 LINK OD2 ASP A 238 CA CA A 401 1555 1555 2.27 LINK OD1 ASP A 238 CA CA E 101 1555 1555 2.36 LINK OD1 ASP A 251 CA CA A 401 1555 1555 2.39 LINK O TRP A 252 CA CA A 401 1555 1555 2.30 LINK CA CA A 401 OP1 DT E 4 1555 1555 2.29 LINK CA CA A 401 O HOH E 201 1555 1555 2.35 LINK O HOH A 512 CA CA E 101 1555 1555 2.48 LINK O HOH A 517 CA CA E 101 1555 1555 2.48 LINK OD2 ASP B 238 CA CA B 401 1555 1555 2.34 LINK OD1 ASP B 238 CA CA C 101 1555 1555 2.33 LINK OD1 ASP B 251 CA CA B 401 1555 1555 2.42 LINK O TRP B 252 CA CA B 401 1555 1555 2.34 LINK CA CA B 401 O HOH B 522 1555 1555 2.37 LINK CA CA B 401 OP1 DT C 4 1555 1555 2.27 LINK O HOH B 529 CA CA C 101 1555 1555 2.39 LINK O HOH B 534 CA CA C 101 1555 1555 2.50 LINK O HOH B 537 CA CA C 101 1555 1555 2.47 LINK O3' DT C 3 CA CA C 101 1555 1555 2.38 LINK OP1 DT C 4 CA CA C 101 1555 1555 2.45 LINK O3' DT E 3 CA CA E 101 1555 1555 2.29 LINK OP1 DT E 4 CA CA E 101 1555 1555 2.50 LINK CA CA E 101 O HOH E 204 1555 1555 2.42 CRYST1 180.756 56.193 114.445 90.00 113.02 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005532 0.000000 0.002351 0.00000 SCALE2 0.000000 0.017796 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009494 0.00000 MTRIX1 1 0.692943 0.008944 0.720937 -8.52467 1 MTRIX2 1 0.009329 -0.999951 0.003439 7.47899 1 MTRIX3 1 0.720932 0.004342 -0.692992 20.14628 1