data_8XBG # _entry.id 8XBG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8XBG pdb_00008xbg 10.2210/pdb8xbg/pdb WWPDB D_1300042062 ? ? EMDB EMD-38217 ? ? # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2024-05-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8XBG _pdbx_database_status.recvd_initial_deposition_date 2023-12-06 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Human GPR34 -Gi complex bound to S3E-LysoPS, receptor focused' _pdbx_database_related.db_id EMD-38217 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email nureki@bs.s.u-tokyo.ac.jp _pdbx_contact_author.name_first Osamu _pdbx_contact_author.name_last Nureki _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0003-1813-7008 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Kawahara, R.' 1 0000-0002-2374-5588 'Shihoya, W.' 2 0000-0003-4813-5740 'Nureki, O.' 3 0000-0003-1813-7008 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Commun' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-1723 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 15 _citation.language ? _citation.page_first 902 _citation.page_last 902 _citation.title 'Structural basis for lysophosphatidylserine recognition by GPR34.' _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41467-024-45046-z _citation.pdbx_database_id_PubMed 38326347 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Izume, T.' 1 ? primary 'Kawahara, R.' 2 ? primary 'Uwamizu, A.' 3 ? primary 'Chen, L.' 4 0000-0001-8821-1256 primary 'Yaginuma, S.' 5 ? primary 'Omi, J.' 6 ? primary 'Kawana, H.' 7 ? primary 'Hou, F.' 8 ? primary 'Sano, F.K.' 9 0000-0002-8965-788X primary 'Tanaka, T.' 10 0000-0001-5728-7573 primary 'Kobayashi, K.' 11 ? primary 'Okamoto, H.H.' 12 ? primary 'Kise, Y.' 13 ? primary 'Ohwada, T.' 14 0000-0001-5390-0203 primary 'Aoki, J.' 15 0000-0001-9435-1896 primary 'Shihoya, W.' 16 0000-0003-4813-5740 primary 'Nureki, O.' 17 0000-0003-1813-7008 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Probable G-protein coupled receptor 34' 45702.742 1 ? ? ? ? 2 non-polymer syn '(2~{S})-2-azanyl-3-[[(2~{R})-1-ethoxy-3-[(~{Z})-octadec-9-enoyl]oxy-propan-2-yl]oxy-oxidanyl-phosphoryl]oxy-propanoic acid' 551.650 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;DYKDDDDAMGRSHTITMTTTSVSSWPYSSHRMRFITNHSDQPPQNFSATPNVTTCPMDEKLLSTVLTTSYSVIFIVGLVG NIIALYVFLGIHRKRNSIQIYLLNVAIADLLLIFCLPFRIMYHINQNKWTLGVILCKVVGTLFYMNMYISIILLGFISLD RYIKINRSIQQRKAITTKQSIYVCCIVWMLALGGFLTMIILTLKKGGHNSTMCFHYRDKHNAKGEAIFNFILVVMFWLIF LLIILSYIKIGKNLLRISKRRSKFPNSGKYATTARNSFIVLIIFTICFVPYHAFRFIYISSQLNVSSCYWKEIVHKTNEI MLVLSSFNSCLDPVMYFLMSSNIRKIMCQLLFRRFQGEPSRSESTSEFKPGYSLHDTSVAVKIQSSSKSTENLYFQ ; _entity_poly.pdbx_seq_one_letter_code_can ;DYKDDDDAMGRSHTITMTTTSVSSWPYSSHRMRFITNHSDQPPQNFSATPNVTTCPMDEKLLSTVLTTSYSVIFIVGLVG NIIALYVFLGIHRKRNSIQIYLLNVAIADLLLIFCLPFRIMYHINQNKWTLGVILCKVVGTLFYMNMYISIILLGFISLD RYIKINRSIQQRKAITTKQSIYVCCIVWMLALGGFLTMIILTLKKGGHNSTMCFHYRDKHNAKGEAIFNFILVVMFWLIF LLIILSYIKIGKNLLRISKRRSKFPNSGKYATTARNSFIVLIIFTICFVPYHAFRFIYISSQLNVSSCYWKEIVHKTNEI MLVLSSFNSCLDPVMYFLMSSNIRKIMCQLLFRRFQGEPSRSESTSEFKPGYSLHDTSVAVKIQSSSKSTENLYFQ ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name '(2~{S})-2-azanyl-3-[[(2~{R})-1-ethoxy-3-[(~{Z})-octadec-9-enoyl]oxy-propan-2-yl]oxy-oxidanyl-phosphoryl]oxy-propanoic acid' _pdbx_entity_nonpoly.comp_id KW0 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 TYR n 1 3 LYS n 1 4 ASP n 1 5 ASP n 1 6 ASP n 1 7 ASP n 1 8 ALA n 1 9 MET n 1 10 GLY n 1 11 ARG n 1 12 SER n 1 13 HIS n 1 14 THR n 1 15 ILE n 1 16 THR n 1 17 MET n 1 18 THR n 1 19 THR n 1 20 THR n 1 21 SER n 1 22 VAL n 1 23 SER n 1 24 SER n 1 25 TRP n 1 26 PRO n 1 27 TYR n 1 28 SER n 1 29 SER n 1 30 HIS n 1 31 ARG n 1 32 MET n 1 33 ARG n 1 34 PHE n 1 35 ILE n 1 36 THR n 1 37 ASN n 1 38 HIS n 1 39 SER n 1 40 ASP n 1 41 GLN n 1 42 PRO n 1 43 PRO n 1 44 GLN n 1 45 ASN n 1 46 PHE n 1 47 SER n 1 48 ALA n 1 49 THR n 1 50 PRO n 1 51 ASN n 1 52 VAL n 1 53 THR n 1 54 THR n 1 55 CYS n 1 56 PRO n 1 57 MET n 1 58 ASP n 1 59 GLU n 1 60 LYS n 1 61 LEU n 1 62 LEU n 1 63 SER n 1 64 THR n 1 65 VAL n 1 66 LEU n 1 67 THR n 1 68 THR n 1 69 SER n 1 70 TYR n 1 71 SER n 1 72 VAL n 1 73 ILE n 1 74 PHE n 1 75 ILE n 1 76 VAL n 1 77 GLY n 1 78 LEU n 1 79 VAL n 1 80 GLY n 1 81 ASN n 1 82 ILE n 1 83 ILE n 1 84 ALA n 1 85 LEU n 1 86 TYR n 1 87 VAL n 1 88 PHE n 1 89 LEU n 1 90 GLY n 1 91 ILE n 1 92 HIS n 1 93 ARG n 1 94 LYS n 1 95 ARG n 1 96 ASN n 1 97 SER n 1 98 ILE n 1 99 GLN n 1 100 ILE n 1 101 TYR n 1 102 LEU n 1 103 LEU n 1 104 ASN n 1 105 VAL n 1 106 ALA n 1 107 ILE n 1 108 ALA n 1 109 ASP n 1 110 LEU n 1 111 LEU n 1 112 LEU n 1 113 ILE n 1 114 PHE n 1 115 CYS n 1 116 LEU n 1 117 PRO n 1 118 PHE n 1 119 ARG n 1 120 ILE n 1 121 MET n 1 122 TYR n 1 123 HIS n 1 124 ILE n 1 125 ASN n 1 126 GLN n 1 127 ASN n 1 128 LYS n 1 129 TRP n 1 130 THR n 1 131 LEU n 1 132 GLY n 1 133 VAL n 1 134 ILE n 1 135 LEU n 1 136 CYS n 1 137 LYS n 1 138 VAL n 1 139 VAL n 1 140 GLY n 1 141 THR n 1 142 LEU n 1 143 PHE n 1 144 TYR n 1 145 MET n 1 146 ASN n 1 147 MET n 1 148 TYR n 1 149 ILE n 1 150 SER n 1 151 ILE n 1 152 ILE n 1 153 LEU n 1 154 LEU n 1 155 GLY n 1 156 PHE n 1 157 ILE n 1 158 SER n 1 159 LEU n 1 160 ASP n 1 161 ARG n 1 162 TYR n 1 163 ILE n 1 164 LYS n 1 165 ILE n 1 166 ASN n 1 167 ARG n 1 168 SER n 1 169 ILE n 1 170 GLN n 1 171 GLN n 1 172 ARG n 1 173 LYS n 1 174 ALA n 1 175 ILE n 1 176 THR n 1 177 THR n 1 178 LYS n 1 179 GLN n 1 180 SER n 1 181 ILE n 1 182 TYR n 1 183 VAL n 1 184 CYS n 1 185 CYS n 1 186 ILE n 1 187 VAL n 1 188 TRP n 1 189 MET n 1 190 LEU n 1 191 ALA n 1 192 LEU n 1 193 GLY n 1 194 GLY n 1 195 PHE n 1 196 LEU n 1 197 THR n 1 198 MET n 1 199 ILE n 1 200 ILE n 1 201 LEU n 1 202 THR n 1 203 LEU n 1 204 LYS n 1 205 LYS n 1 206 GLY n 1 207 GLY n 1 208 HIS n 1 209 ASN n 1 210 SER n 1 211 THR n 1 212 MET n 1 213 CYS n 1 214 PHE n 1 215 HIS n 1 216 TYR n 1 217 ARG n 1 218 ASP n 1 219 LYS n 1 220 HIS n 1 221 ASN n 1 222 ALA n 1 223 LYS n 1 224 GLY n 1 225 GLU n 1 226 ALA n 1 227 ILE n 1 228 PHE n 1 229 ASN n 1 230 PHE n 1 231 ILE n 1 232 LEU n 1 233 VAL n 1 234 VAL n 1 235 MET n 1 236 PHE n 1 237 TRP n 1 238 LEU n 1 239 ILE n 1 240 PHE n 1 241 LEU n 1 242 LEU n 1 243 ILE n 1 244 ILE n 1 245 LEU n 1 246 SER n 1 247 TYR n 1 248 ILE n 1 249 LYS n 1 250 ILE n 1 251 GLY n 1 252 LYS n 1 253 ASN n 1 254 LEU n 1 255 LEU n 1 256 ARG n 1 257 ILE n 1 258 SER n 1 259 LYS n 1 260 ARG n 1 261 ARG n 1 262 SER n 1 263 LYS n 1 264 PHE n 1 265 PRO n 1 266 ASN n 1 267 SER n 1 268 GLY n 1 269 LYS n 1 270 TYR n 1 271 ALA n 1 272 THR n 1 273 THR n 1 274 ALA n 1 275 ARG n 1 276 ASN n 1 277 SER n 1 278 PHE n 1 279 ILE n 1 280 VAL n 1 281 LEU n 1 282 ILE n 1 283 ILE n 1 284 PHE n 1 285 THR n 1 286 ILE n 1 287 CYS n 1 288 PHE n 1 289 VAL n 1 290 PRO n 1 291 TYR n 1 292 HIS n 1 293 ALA n 1 294 PHE n 1 295 ARG n 1 296 PHE n 1 297 ILE n 1 298 TYR n 1 299 ILE n 1 300 SER n 1 301 SER n 1 302 GLN n 1 303 LEU n 1 304 ASN n 1 305 VAL n 1 306 SER n 1 307 SER n 1 308 CYS n 1 309 TYR n 1 310 TRP n 1 311 LYS n 1 312 GLU n 1 313 ILE n 1 314 VAL n 1 315 HIS n 1 316 LYS n 1 317 THR n 1 318 ASN n 1 319 GLU n 1 320 ILE n 1 321 MET n 1 322 LEU n 1 323 VAL n 1 324 LEU n 1 325 SER n 1 326 SER n 1 327 PHE n 1 328 ASN n 1 329 SER n 1 330 CYS n 1 331 LEU n 1 332 ASP n 1 333 PRO n 1 334 VAL n 1 335 MET n 1 336 TYR n 1 337 PHE n 1 338 LEU n 1 339 MET n 1 340 SER n 1 341 SER n 1 342 ASN n 1 343 ILE n 1 344 ARG n 1 345 LYS n 1 346 ILE n 1 347 MET n 1 348 CYS n 1 349 GLN n 1 350 LEU n 1 351 LEU n 1 352 PHE n 1 353 ARG n 1 354 ARG n 1 355 PHE n 1 356 GLN n 1 357 GLY n 1 358 GLU n 1 359 PRO n 1 360 SER n 1 361 ARG n 1 362 SER n 1 363 GLU n 1 364 SER n 1 365 THR n 1 366 SER n 1 367 GLU n 1 368 PHE n 1 369 LYS n 1 370 PRO n 1 371 GLY n 1 372 TYR n 1 373 SER n 1 374 LEU n 1 375 HIS n 1 376 ASP n 1 377 THR n 1 378 SER n 1 379 VAL n 1 380 ALA n 1 381 VAL n 1 382 LYS n 1 383 ILE n 1 384 GLN n 1 385 SER n 1 386 SER n 1 387 SER n 1 388 LYS n 1 389 SER n 1 390 THR n 1 391 GLU n 1 392 ASN n 1 393 LEU n 1 394 TYR n 1 395 PHE n 1 396 GLN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 396 _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene GPR34 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Spodoptera frugiperda' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 7108 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 KW0 non-polymer . '(2~{S})-2-azanyl-3-[[(2~{R})-1-ethoxy-3-[(~{Z})-octadec-9-enoyl]oxy-propan-2-yl]oxy-oxidanyl-phosphoryl]oxy-propanoic acid' ? 'C26 H50 N O9 P' 551.650 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 -8 ? ? ? A . n A 1 2 TYR 2 -7 ? ? ? A . n A 1 3 LYS 3 -6 ? ? ? A . n A 1 4 ASP 4 -5 ? ? ? A . n A 1 5 ASP 5 -4 ? ? ? A . n A 1 6 ASP 6 -3 ? ? ? A . n A 1 7 ASP 7 -2 ? ? ? A . n A 1 8 ALA 8 -1 ? ? ? A . n A 1 9 MET 9 0 ? ? ? A . n A 1 10 GLY 10 1 ? ? ? A . n A 1 11 ARG 11 2 ? ? ? A . n A 1 12 SER 12 3 ? ? ? A . n A 1 13 HIS 13 4 ? ? ? A . n A 1 14 THR 14 5 ? ? ? A . n A 1 15 ILE 15 6 ? ? ? A . n A 1 16 THR 16 7 ? ? ? A . n A 1 17 MET 17 8 ? ? ? A . n A 1 18 THR 18 9 ? ? ? A . n A 1 19 THR 19 10 ? ? ? A . n A 1 20 THR 20 11 ? ? ? A . n A 1 21 SER 21 12 ? ? ? A . n A 1 22 VAL 22 13 ? ? ? A . n A 1 23 SER 23 14 ? ? ? A . n A 1 24 SER 24 15 ? ? ? A . n A 1 25 TRP 25 16 ? ? ? A . n A 1 26 PRO 26 17 ? ? ? A . n A 1 27 TYR 27 18 ? ? ? A . n A 1 28 SER 28 19 ? ? ? A . n A 1 29 SER 29 20 ? ? ? A . n A 1 30 HIS 30 21 ? ? ? A . n A 1 31 ARG 31 22 ? ? ? A . n A 1 32 MET 32 23 ? ? ? A . n A 1 33 ARG 33 24 ? ? ? A . n A 1 34 PHE 34 25 ? ? ? A . n A 1 35 ILE 35 26 ? ? ? A . n A 1 36 THR 36 27 ? ? ? A . n A 1 37 ASN 37 28 ? ? ? A . n A 1 38 HIS 38 29 ? ? ? A . n A 1 39 SER 39 30 ? ? ? A . n A 1 40 ASP 40 31 ? ? ? A . n A 1 41 GLN 41 32 ? ? ? A . n A 1 42 PRO 42 33 ? ? ? A . n A 1 43 PRO 43 34 ? ? ? A . n A 1 44 GLN 44 35 ? ? ? A . n A 1 45 ASN 45 36 ? ? ? A . n A 1 46 PHE 46 37 ? ? ? A . n A 1 47 SER 47 38 ? ? ? A . n A 1 48 ALA 48 39 ? ? ? A . n A 1 49 THR 49 40 ? ? ? A . n A 1 50 PRO 50 41 ? ? ? A . n A 1 51 ASN 51 42 ? ? ? A . n A 1 52 VAL 52 43 ? ? ? A . n A 1 53 THR 53 44 ? ? ? A . n A 1 54 THR 54 45 45 THR THR A . n A 1 55 CYS 55 46 46 CYS CYS A . n A 1 56 PRO 56 47 47 PRO PRO A . n A 1 57 MET 57 48 48 MET MET A . n A 1 58 ASP 58 49 49 ASP ASP A . n A 1 59 GLU 59 50 50 GLU GLU A . n A 1 60 LYS 60 51 51 LYS LYS A . n A 1 61 LEU 61 52 52 LEU LEU A . n A 1 62 LEU 62 53 53 LEU LEU A . n A 1 63 SER 63 54 54 SER SER A . n A 1 64 THR 64 55 55 THR THR A . n A 1 65 VAL 65 56 56 VAL VAL A . n A 1 66 LEU 66 57 57 LEU LEU A . n A 1 67 THR 67 58 58 THR THR A . n A 1 68 THR 68 59 59 THR THR A . n A 1 69 SER 69 60 60 SER SER A . n A 1 70 TYR 70 61 61 TYR TYR A . n A 1 71 SER 71 62 62 SER SER A . n A 1 72 VAL 72 63 63 VAL VAL A . n A 1 73 ILE 73 64 64 ILE ILE A . n A 1 74 PHE 74 65 65 PHE PHE A . n A 1 75 ILE 75 66 66 ILE ILE A . n A 1 76 VAL 76 67 67 VAL VAL A . n A 1 77 GLY 77 68 68 GLY GLY A . n A 1 78 LEU 78 69 69 LEU LEU A . n A 1 79 VAL 79 70 70 VAL VAL A . n A 1 80 GLY 80 71 71 GLY GLY A . n A 1 81 ASN 81 72 72 ASN ASN A . n A 1 82 ILE 82 73 73 ILE ILE A . n A 1 83 ILE 83 74 74 ILE ILE A . n A 1 84 ALA 84 75 75 ALA ALA A . n A 1 85 LEU 85 76 76 LEU LEU A . n A 1 86 TYR 86 77 77 TYR TYR A . n A 1 87 VAL 87 78 78 VAL VAL A . n A 1 88 PHE 88 79 79 PHE PHE A . n A 1 89 LEU 89 80 80 LEU LEU A . n A 1 90 GLY 90 81 81 GLY GLY A . n A 1 91 ILE 91 82 82 ILE ILE A . n A 1 92 HIS 92 83 83 HIS HIS A . n A 1 93 ARG 93 84 84 ARG ARG A . n A 1 94 LYS 94 85 85 LYS LYS A . n A 1 95 ARG 95 86 86 ARG ARG A . n A 1 96 ASN 96 87 87 ASN ASN A . n A 1 97 SER 97 88 88 SER SER A . n A 1 98 ILE 98 89 89 ILE ILE A . n A 1 99 GLN 99 90 90 GLN GLN A . n A 1 100 ILE 100 91 91 ILE ILE A . n A 1 101 TYR 101 92 92 TYR TYR A . n A 1 102 LEU 102 93 93 LEU LEU A . n A 1 103 LEU 103 94 94 LEU LEU A . n A 1 104 ASN 104 95 95 ASN ASN A . n A 1 105 VAL 105 96 96 VAL VAL A . n A 1 106 ALA 106 97 97 ALA ALA A . n A 1 107 ILE 107 98 98 ILE ILE A . n A 1 108 ALA 108 99 99 ALA ALA A . n A 1 109 ASP 109 100 100 ASP ASP A . n A 1 110 LEU 110 101 101 LEU LEU A . n A 1 111 LEU 111 102 102 LEU LEU A . n A 1 112 LEU 112 103 103 LEU LEU A . n A 1 113 ILE 113 104 104 ILE ILE A . n A 1 114 PHE 114 105 105 PHE PHE A . n A 1 115 CYS 115 106 106 CYS CYS A . n A 1 116 LEU 116 107 107 LEU LEU A . n A 1 117 PRO 117 108 108 PRO PRO A . n A 1 118 PHE 118 109 109 PHE PHE A . n A 1 119 ARG 119 110 110 ARG ARG A . n A 1 120 ILE 120 111 111 ILE ILE A . n A 1 121 MET 121 112 112 MET MET A . n A 1 122 TYR 122 113 113 TYR TYR A . n A 1 123 HIS 123 114 114 HIS HIS A . n A 1 124 ILE 124 115 115 ILE ILE A . n A 1 125 ASN 125 116 116 ASN ASN A . n A 1 126 GLN 126 117 117 GLN GLN A . n A 1 127 ASN 127 118 118 ASN ASN A . n A 1 128 LYS 128 119 119 LYS LYS A . n A 1 129 TRP 129 120 120 TRP TRP A . n A 1 130 THR 130 121 121 THR THR A . n A 1 131 LEU 131 122 122 LEU LEU A . n A 1 132 GLY 132 123 123 GLY GLY A . n A 1 133 VAL 133 124 124 VAL VAL A . n A 1 134 ILE 134 125 125 ILE ILE A . n A 1 135 LEU 135 126 126 LEU LEU A . n A 1 136 CYS 136 127 127 CYS CYS A . n A 1 137 LYS 137 128 128 LYS LYS A . n A 1 138 VAL 138 129 129 VAL VAL A . n A 1 139 VAL 139 130 130 VAL VAL A . n A 1 140 GLY 140 131 131 GLY GLY A . n A 1 141 THR 141 132 132 THR THR A . n A 1 142 LEU 142 133 133 LEU LEU A . n A 1 143 PHE 143 134 134 PHE PHE A . n A 1 144 TYR 144 135 135 TYR TYR A . n A 1 145 MET 145 136 136 MET MET A . n A 1 146 ASN 146 137 137 ASN ASN A . n A 1 147 MET 147 138 138 MET MET A . n A 1 148 TYR 148 139 139 TYR TYR A . n A 1 149 ILE 149 140 140 ILE ILE A . n A 1 150 SER 150 141 141 SER SER A . n A 1 151 ILE 151 142 142 ILE ILE A . n A 1 152 ILE 152 143 143 ILE ILE A . n A 1 153 LEU 153 144 144 LEU LEU A . n A 1 154 LEU 154 145 145 LEU LEU A . n A 1 155 GLY 155 146 146 GLY GLY A . n A 1 156 PHE 156 147 147 PHE PHE A . n A 1 157 ILE 157 148 148 ILE ILE A . n A 1 158 SER 158 149 149 SER SER A . n A 1 159 LEU 159 150 150 LEU LEU A . n A 1 160 ASP 160 151 151 ASP ASP A . n A 1 161 ARG 161 152 152 ARG ARG A . n A 1 162 TYR 162 153 153 TYR TYR A . n A 1 163 ILE 163 154 154 ILE ILE A . n A 1 164 LYS 164 155 155 LYS LYS A . n A 1 165 ILE 165 156 156 ILE ILE A . n A 1 166 ASN 166 157 157 ASN ASN A . n A 1 167 ARG 167 158 158 ARG ARG A . n A 1 168 SER 168 159 159 SER SER A . n A 1 169 ILE 169 160 160 ILE ILE A . n A 1 170 GLN 170 161 161 GLN GLN A . n A 1 171 GLN 171 162 162 GLN GLN A . n A 1 172 ARG 172 163 163 ARG ARG A . n A 1 173 LYS 173 164 164 LYS LYS A . n A 1 174 ALA 174 165 165 ALA ALA A . n A 1 175 ILE 175 166 166 ILE ILE A . n A 1 176 THR 176 167 167 THR THR A . n A 1 177 THR 177 168 168 THR THR A . n A 1 178 LYS 178 169 169 LYS LYS A . n A 1 179 GLN 179 170 170 GLN GLN A . n A 1 180 SER 180 171 171 SER SER A . n A 1 181 ILE 181 172 172 ILE ILE A . n A 1 182 TYR 182 173 173 TYR TYR A . n A 1 183 VAL 183 174 174 VAL VAL A . n A 1 184 CYS 184 175 175 CYS CYS A . n A 1 185 CYS 185 176 176 CYS CYS A . n A 1 186 ILE 186 177 177 ILE ILE A . n A 1 187 VAL 187 178 178 VAL VAL A . n A 1 188 TRP 188 179 179 TRP TRP A . n A 1 189 MET 189 180 180 MET MET A . n A 1 190 LEU 190 181 181 LEU LEU A . n A 1 191 ALA 191 182 182 ALA ALA A . n A 1 192 LEU 192 183 183 LEU LEU A . n A 1 193 GLY 193 184 184 GLY GLY A . n A 1 194 GLY 194 185 185 GLY GLY A . n A 1 195 PHE 195 186 186 PHE PHE A . n A 1 196 LEU 196 187 187 LEU LEU A . n A 1 197 THR 197 188 188 THR THR A . n A 1 198 MET 198 189 189 MET MET A . n A 1 199 ILE 199 190 190 ILE ILE A . n A 1 200 ILE 200 191 191 ILE ILE A . n A 1 201 LEU 201 192 192 LEU LEU A . n A 1 202 THR 202 193 193 THR THR A . n A 1 203 LEU 203 194 194 LEU LEU A . n A 1 204 LYS 204 195 195 LYS LYS A . n A 1 205 LYS 205 196 196 LYS LYS A . n A 1 206 GLY 206 197 197 GLY GLY A . n A 1 207 GLY 207 198 198 GLY GLY A . n A 1 208 HIS 208 199 199 HIS HIS A . n A 1 209 ASN 209 200 200 ASN ASN A . n A 1 210 SER 210 201 201 SER SER A . n A 1 211 THR 211 202 202 THR THR A . n A 1 212 MET 212 203 203 MET MET A . n A 1 213 CYS 213 204 204 CYS CYS A . n A 1 214 PHE 214 205 205 PHE PHE A . n A 1 215 HIS 215 206 206 HIS HIS A . n A 1 216 TYR 216 207 207 TYR TYR A . n A 1 217 ARG 217 208 208 ARG ARG A . n A 1 218 ASP 218 209 209 ASP ASP A . n A 1 219 LYS 219 210 210 LYS LYS A . n A 1 220 HIS 220 211 211 HIS HIS A . n A 1 221 ASN 221 212 212 ASN ASN A . n A 1 222 ALA 222 213 213 ALA ALA A . n A 1 223 LYS 223 214 214 LYS LYS A . n A 1 224 GLY 224 215 215 GLY GLY A . n A 1 225 GLU 225 216 216 GLU GLU A . n A 1 226 ALA 226 217 217 ALA ALA A . n A 1 227 ILE 227 218 218 ILE ILE A . n A 1 228 PHE 228 219 219 PHE PHE A . n A 1 229 ASN 229 220 220 ASN ASN A . n A 1 230 PHE 230 221 221 PHE PHE A . n A 1 231 ILE 231 222 222 ILE ILE A . n A 1 232 LEU 232 223 223 LEU LEU A . n A 1 233 VAL 233 224 224 VAL VAL A . n A 1 234 VAL 234 225 225 VAL VAL A . n A 1 235 MET 235 226 226 MET MET A . n A 1 236 PHE 236 227 227 PHE PHE A . n A 1 237 TRP 237 228 228 TRP TRP A . n A 1 238 LEU 238 229 229 LEU LEU A . n A 1 239 ILE 239 230 230 ILE ILE A . n A 1 240 PHE 240 231 231 PHE PHE A . n A 1 241 LEU 241 232 232 LEU LEU A . n A 1 242 LEU 242 233 233 LEU LEU A . n A 1 243 ILE 243 234 234 ILE ILE A . n A 1 244 ILE 244 235 235 ILE ILE A . n A 1 245 LEU 245 236 236 LEU LEU A . n A 1 246 SER 246 237 237 SER SER A . n A 1 247 TYR 247 238 238 TYR TYR A . n A 1 248 ILE 248 239 239 ILE ILE A . n A 1 249 LYS 249 240 240 LYS LYS A . n A 1 250 ILE 250 241 241 ILE ILE A . n A 1 251 GLY 251 242 242 GLY GLY A . n A 1 252 LYS 252 243 243 LYS LYS A . n A 1 253 ASN 253 244 244 ASN ASN A . n A 1 254 LEU 254 245 245 LEU LEU A . n A 1 255 LEU 255 246 246 LEU LEU A . n A 1 256 ARG 256 247 247 ARG ARG A . n A 1 257 ILE 257 248 248 ILE ILE A . n A 1 258 SER 258 249 249 SER SER A . n A 1 259 LYS 259 250 250 LYS LYS A . n A 1 260 ARG 260 251 251 ARG ARG A . n A 1 261 ARG 261 252 252 ARG ARG A . n A 1 262 SER 262 253 253 SER SER A . n A 1 263 LYS 263 254 254 LYS LYS A . n A 1 264 PHE 264 255 255 PHE PHE A . n A 1 265 PRO 265 256 256 PRO PRO A . n A 1 266 ASN 266 257 257 ASN ASN A . n A 1 267 SER 267 258 258 SER SER A . n A 1 268 GLY 268 259 259 GLY GLY A . n A 1 269 LYS 269 260 260 LYS LYS A . n A 1 270 TYR 270 261 261 TYR TYR A . n A 1 271 ALA 271 262 262 ALA ALA A . n A 1 272 THR 272 263 263 THR THR A . n A 1 273 THR 273 264 264 THR THR A . n A 1 274 ALA 274 265 265 ALA ALA A . n A 1 275 ARG 275 266 266 ARG ARG A . n A 1 276 ASN 276 267 267 ASN ASN A . n A 1 277 SER 277 268 268 SER SER A . n A 1 278 PHE 278 269 269 PHE PHE A . n A 1 279 ILE 279 270 270 ILE ILE A . n A 1 280 VAL 280 271 271 VAL VAL A . n A 1 281 LEU 281 272 272 LEU LEU A . n A 1 282 ILE 282 273 273 ILE ILE A . n A 1 283 ILE 283 274 274 ILE ILE A . n A 1 284 PHE 284 275 275 PHE PHE A . n A 1 285 THR 285 276 276 THR THR A . n A 1 286 ILE 286 277 277 ILE ILE A . n A 1 287 CYS 287 278 278 CYS CYS A . n A 1 288 PHE 288 279 279 PHE PHE A . n A 1 289 VAL 289 280 280 VAL VAL A . n A 1 290 PRO 290 281 281 PRO PRO A . n A 1 291 TYR 291 282 282 TYR TYR A . n A 1 292 HIS 292 283 283 HIS HIS A . n A 1 293 ALA 293 284 284 ALA ALA A . n A 1 294 PHE 294 285 285 PHE PHE A . n A 1 295 ARG 295 286 286 ARG ARG A . n A 1 296 PHE 296 287 287 PHE PHE A . n A 1 297 ILE 297 288 288 ILE ILE A . n A 1 298 TYR 298 289 289 TYR TYR A . n A 1 299 ILE 299 290 290 ILE ILE A . n A 1 300 SER 300 291 291 SER SER A . n A 1 301 SER 301 292 292 SER SER A . n A 1 302 GLN 302 293 293 GLN GLN A . n A 1 303 LEU 303 294 294 LEU LEU A . n A 1 304 ASN 304 295 295 ASN ASN A . n A 1 305 VAL 305 296 296 VAL VAL A . n A 1 306 SER 306 297 297 SER SER A . n A 1 307 SER 307 298 298 SER SER A . n A 1 308 CYS 308 299 299 CYS CYS A . n A 1 309 TYR 309 300 300 TYR TYR A . n A 1 310 TRP 310 301 301 TRP TRP A . n A 1 311 LYS 311 302 302 LYS LYS A . n A 1 312 GLU 312 303 303 GLU GLU A . n A 1 313 ILE 313 304 304 ILE ILE A . n A 1 314 VAL 314 305 305 VAL VAL A . n A 1 315 HIS 315 306 306 HIS HIS A . n A 1 316 LYS 316 307 307 LYS LYS A . n A 1 317 THR 317 308 308 THR THR A . n A 1 318 ASN 318 309 309 ASN ASN A . n A 1 319 GLU 319 310 310 GLU GLU A . n A 1 320 ILE 320 311 311 ILE ILE A . n A 1 321 MET 321 312 312 MET MET A . n A 1 322 LEU 322 313 313 LEU LEU A . n A 1 323 VAL 323 314 314 VAL VAL A . n A 1 324 LEU 324 315 315 LEU LEU A . n A 1 325 SER 325 316 316 SER SER A . n A 1 326 SER 326 317 317 SER SER A . n A 1 327 PHE 327 318 318 PHE PHE A . n A 1 328 ASN 328 319 319 ASN ASN A . n A 1 329 SER 329 320 320 SER SER A . n A 1 330 CYS 330 321 321 CYS CYS A . n A 1 331 LEU 331 322 322 LEU LEU A . n A 1 332 ASP 332 323 323 ASP ASP A . n A 1 333 PRO 333 324 324 PRO PRO A . n A 1 334 VAL 334 325 325 VAL VAL A . n A 1 335 MET 335 326 326 MET MET A . n A 1 336 TYR 336 327 327 TYR TYR A . n A 1 337 PHE 337 328 328 PHE PHE A . n A 1 338 LEU 338 329 329 LEU LEU A . n A 1 339 MET 339 330 330 MET MET A . n A 1 340 SER 340 331 331 SER SER A . n A 1 341 SER 341 332 332 SER SER A . n A 1 342 ASN 342 333 333 ASN ASN A . n A 1 343 ILE 343 334 334 ILE ILE A . n A 1 344 ARG 344 335 335 ARG ARG A . n A 1 345 LYS 345 336 336 LYS LYS A . n A 1 346 ILE 346 337 337 ILE ILE A . n A 1 347 MET 347 338 338 MET MET A . n A 1 348 CYS 348 339 339 CYS CYS A . n A 1 349 GLN 349 340 340 GLN GLN A . n A 1 350 LEU 350 341 341 LEU LEU A . n A 1 351 LEU 351 342 342 LEU LEU A . n A 1 352 PHE 352 343 ? ? ? A . n A 1 353 ARG 353 344 ? ? ? A . n A 1 354 ARG 354 345 ? ? ? A . n A 1 355 PHE 355 346 ? ? ? A . n A 1 356 GLN 356 347 ? ? ? A . n A 1 357 GLY 357 348 ? ? ? A . n A 1 358 GLU 358 349 ? ? ? A . n A 1 359 PRO 359 350 ? ? ? A . n A 1 360 SER 360 351 ? ? ? A . n A 1 361 ARG 361 352 ? ? ? A . n A 1 362 SER 362 353 ? ? ? A . n A 1 363 GLU 363 354 ? ? ? A . n A 1 364 SER 364 355 ? ? ? A . n A 1 365 THR 365 356 ? ? ? A . n A 1 366 SER 366 357 ? ? ? A . n A 1 367 GLU 367 358 ? ? ? A . n A 1 368 PHE 368 359 ? ? ? A . n A 1 369 LYS 369 360 ? ? ? A . n A 1 370 PRO 370 361 ? ? ? A . n A 1 371 GLY 371 362 ? ? ? A . n A 1 372 TYR 372 363 ? ? ? A . n A 1 373 SER 373 364 ? ? ? A . n A 1 374 LEU 374 365 ? ? ? A . n A 1 375 HIS 375 366 ? ? ? A . n A 1 376 ASP 376 367 ? ? ? A . n A 1 377 THR 377 368 ? ? ? A . n A 1 378 SER 378 369 ? ? ? A . n A 1 379 VAL 379 370 ? ? ? A . n A 1 380 ALA 380 371 ? ? ? A . n A 1 381 VAL 381 372 ? ? ? A . n A 1 382 LYS 382 373 ? ? ? A . n A 1 383 ILE 383 374 ? ? ? A . n A 1 384 GLN 384 375 ? ? ? A . n A 1 385 SER 385 376 ? ? ? A . n A 1 386 SER 386 377 ? ? ? A . n A 1 387 SER 387 378 ? ? ? A . n A 1 388 LYS 388 379 ? ? ? A . n A 1 389 SER 389 380 ? ? ? A . n A 1 390 THR 390 381 ? ? ? A . n A 1 391 GLU 391 382 ? ? ? A . n A 1 392 ASN 392 383 ? ? ? A . n A 1 393 LEU 393 384 ? ? ? A . n A 1 394 TYR 394 385 ? ? ? A . n A 1 395 PHE 395 386 ? ? ? A . n A 1 396 GLN 396 387 ? ? ? A . n # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id KW0 _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 401 _pdbx_nonpoly_scheme.auth_seq_num 401 _pdbx_nonpoly_scheme.pdb_mon_id KW0 _pdbx_nonpoly_scheme.auth_mon_id LPS _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8XBG _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8XBG _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8XBG _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 142.074 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.809 _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 8XBG _refine.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 3.43 _refine.ls_d_res_low 3.43 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 85224 _refine.ls_number_reflns_R_free ? _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 100.00 _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.48181 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.48181 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'PARAMETERS FOR MASK CACLULATION' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.261 _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id ? _refine.overall_SU_B 16.774 _refine.overall_SU_ML 0.274 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine_hist.cycle_id 1 _refine_hist.details ? _refine_hist.d_res_high . _refine_hist.d_res_low . _refine_hist.number_atoms_solvent ? _refine_hist.number_atoms_total 2603 _refine_hist.number_reflns_all ? _refine_hist.number_reflns_obs ? _refine_hist.number_reflns_R_free ? _refine_hist.number_reflns_R_work ? _refine_hist.R_factor_all ? _refine_hist.R_factor_obs ? _refine_hist.R_factor_R_free ? _refine_hist.R_factor_R_work ? _refine_hist.pdbx_number_residues_total ? _refine_hist.pdbx_B_iso_mean_ligand ? _refine_hist.pdbx_B_iso_mean_solvent ? _refine_hist.pdbx_number_atoms_protein ? _refine_hist.pdbx_number_atoms_nucleic_acid ? _refine_hist.pdbx_number_atoms_ligand ? _refine_hist.pdbx_number_atoms_lipid ? _refine_hist.pdbx_number_atoms_carb ? _refine_hist.pdbx_pseudo_atom_details ? # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'ELECTRON MICROSCOPY' ? 0.014 0.013 2659 ? r_bond_refined_d ? ? 'ELECTRON MICROSCOPY' ? 0.000 0.017 2704 ? r_bond_other_d ? ? 'ELECTRON MICROSCOPY' ? 1.548 1.625 3586 ? r_angle_refined_deg ? ? 'ELECTRON MICROSCOPY' ? 1.654 1.568 6187 ? r_angle_other_deg ? ? 'ELECTRON MICROSCOPY' ? 4.581 5.000 315 ? r_dihedral_angle_1_deg ? ? 'ELECTRON MICROSCOPY' ? 28.410 20.811 111 ? r_dihedral_angle_2_deg ? ? 'ELECTRON MICROSCOPY' ? 14.900 15.000 493 ? r_dihedral_angle_3_deg ? ? 'ELECTRON MICROSCOPY' ? 16.614 15.000 13 ? r_dihedral_angle_4_deg ? ? 'ELECTRON MICROSCOPY' ? 0.096 0.200 366 ? r_chiral_restr ? ? 'ELECTRON MICROSCOPY' ? 0.009 0.020 2841 ? r_gen_planes_refined ? ? 'ELECTRON MICROSCOPY' ? 0.003 0.020 637 ? r_gen_planes_other ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_nbd_refined ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_nbd_other ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_nbtor_refined ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_nbtor_other ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_metal_ion_refined ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_metal_ion_other ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_symmetry_vdw_other ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_symmetry_hbond_other ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'ELECTRON MICROSCOPY' ? 28.066 13.278 1266 ? r_mcbond_it ? ? 'ELECTRON MICROSCOPY' ? 28.069 13.281 1265 ? r_mcbond_other ? ? 'ELECTRON MICROSCOPY' ? 40.177 19.861 1579 ? r_mcangle_it ? ? 'ELECTRON MICROSCOPY' ? 40.166 19.860 1580 ? r_mcangle_other ? ? 'ELECTRON MICROSCOPY' ? 27.892 16.026 1393 ? r_scbond_it ? ? 'ELECTRON MICROSCOPY' ? 27.882 16.028 1394 ? r_scbond_other ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_scangle_it ? ? 'ELECTRON MICROSCOPY' ? 42.461 22.925 2008 ? r_scangle_other ? ? 'ELECTRON MICROSCOPY' ? 56.464 ? 10991 ? r_long_range_B_refined ? ? 'ELECTRON MICROSCOPY' ? 56.461 ? 10992 ? r_long_range_B_other ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_rigid_bond_restr ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_sphericity_free ? ? 'ELECTRON MICROSCOPY' ? ? ? ? ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'ELECTRON MICROSCOPY' _refine_ls_shell.d_res_high 2.900 _refine_ls_shell.d_res_low 2.975 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 0 _refine_ls_shell.number_reflns_R_work 6259 _refine_ls_shell.percent_reflns_obs 100.00 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.746 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_R_complete ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? _refine_ls_shell.R_factor_R_free 0.000 # _struct.entry_id 8XBG _struct.title 'Human GPR34 -Gi complex bound to S3E-LysoPS, receptor focused' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8XBG _struct_keywords.text 'GPCR, MEMBRANE PROTEIN' _struct_keywords.pdbx_keywords 'MEMBRANE PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code GPR34_HUMAN _struct_ref.pdbx_db_accession Q9UPC5 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;RSHTITMTTTSVSSWPYSSHRMRFITNHSDQPPQNFSATPNVTTCPMDEKLLSTVLTTSYSVIFIVGLVGNIIALYVFLG IHRKRNSIQIYLLNVAIADLLLIFCLPFRIMYHINQNKWTLGVILCKVVGTLFYMNMYISIILLGFISLDRYIKINRSIQ QRKAITTKQSIYVCCIVWMLALGGFLTMIILTLKKGGHNSTMCFHYRDKHNAKGEAIFNFILVVMFWLIFLLIILSYIKI GKNLLRISKRRSKFPNSGKYATTARNSFIVLIIFTICFVPYHAFRFIYISSQLNVSSCYWKEIVHKTNEIMLVLSSFNSC LDPVMYFLMSSNIRKIMCQLLFRRFQGEPSRSESTSEFKPGYSLHDTSVAVKIQSSSKST ; _struct_ref.pdbx_align_begin 2 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8XBG _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 11 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 390 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9UPC5 _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 381 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 381 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 8XBG ASP A 1 ? UNP Q9UPC5 ? ? 'expression tag' -8 1 1 8XBG TYR A 2 ? UNP Q9UPC5 ? ? 'expression tag' -7 2 1 8XBG LYS A 3 ? UNP Q9UPC5 ? ? 'expression tag' -6 3 1 8XBG ASP A 4 ? UNP Q9UPC5 ? ? 'expression tag' -5 4 1 8XBG ASP A 5 ? UNP Q9UPC5 ? ? 'expression tag' -4 5 1 8XBG ASP A 6 ? UNP Q9UPC5 ? ? 'expression tag' -3 6 1 8XBG ASP A 7 ? UNP Q9UPC5 ? ? 'expression tag' -2 7 1 8XBG ALA A 8 ? UNP Q9UPC5 ? ? 'expression tag' -1 8 1 8XBG MET A 9 ? UNP Q9UPC5 ? ? 'expression tag' 0 9 1 8XBG GLY A 10 ? UNP Q9UPC5 ? ? 'expression tag' 1 10 1 8XBG GLU A 391 ? UNP Q9UPC5 ? ? 'expression tag' 382 11 1 8XBG ASN A 392 ? UNP Q9UPC5 ? ? 'expression tag' 383 12 1 8XBG LEU A 393 ? UNP Q9UPC5 ? ? 'expression tag' 384 13 1 8XBG TYR A 394 ? UNP Q9UPC5 ? ? 'expression tag' 385 14 1 8XBG PHE A 395 ? UNP Q9UPC5 ? ? 'expression tag' 386 15 1 8XBG GLN A 396 ? UNP Q9UPC5 ? ? 'expression tag' 387 16 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLU A 59 ? GLY A 90 ? GLU A 50 GLY A 81 1 ? 32 HELX_P HELX_P2 AA2 ASN A 96 ? GLN A 126 ? ASN A 87 GLN A 117 1 ? 31 HELX_P HELX_P3 AA3 GLY A 132 ? ASN A 166 ? GLY A 123 ASN A 157 1 ? 35 HELX_P HELX_P4 AA4 THR A 176 ? LYS A 204 ? THR A 167 LYS A 195 1 ? 29 HELX_P HELX_P5 AA5 ASP A 218 ? ASN A 221 ? ASP A 209 ASN A 212 5 ? 4 HELX_P HELX_P6 AA6 ALA A 222 ? ARG A 261 ? ALA A 213 ARG A 252 1 ? 40 HELX_P HELX_P7 AA7 GLY A 268 ? LEU A 303 ? GLY A 259 LEU A 294 1 ? 36 HELX_P HELX_P8 AA8 SER A 307 ? SER A 340 ? SER A 298 SER A 331 1 ? 34 HELX_P HELX_P9 AA9 SER A 340 ? LEU A 351 ? SER A 331 LEU A 342 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 55 SG ? ? ? 1_555 A CYS 308 SG ? ? A CYS 46 A CYS 299 1_555 ? ? ? ? ? ? ? 2.055 ? ? disulf2 disulf ? ? A CYS 136 SG ? ? ? 1_555 A CYS 213 SG ? ? A CYS 127 A CYS 204 1_555 ? ? ? ? ? ? ? 2.100 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CA _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 SER _pdbx_validate_rmsd_bond.auth_seq_id_1 268 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 CB _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 SER _pdbx_validate_rmsd_bond.auth_seq_id_2 268 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.430 _pdbx_validate_rmsd_bond.bond_target_value 1.525 _pdbx_validate_rmsd_bond.bond_deviation -0.095 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.015 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A TYR 139 ? ? CG A TYR 139 ? ? CD2 A TYR 139 ? ? 116.88 121.00 -4.12 0.60 N 2 1 NE A ARG 152 ? ? CZ A ARG 152 ? ? NH1 A ARG 152 ? ? 116.50 120.30 -3.80 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 50 ? ? -141.17 28.87 2 1 ASN A 116 ? ? -60.72 -73.16 3 1 GLN A 117 ? ? -145.10 13.04 4 1 ILE A 156 ? ? -98.01 -62.31 5 1 LYS A 164 ? ? 59.59 17.95 6 1 PHE A 205 ? ? 65.63 -3.09 7 1 ASN A 257 ? ? 38.42 44.87 # _pdbx_entry_details.entry_id 8XBG _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 8XBG _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 8XBG _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.43 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 79925 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 8 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'Human GPR34-Gi complex bound to S3E-LysoPS, receptor focused' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 8XBG _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 500 _em_imaging.nominal_defocus_max 2500 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? # _em_vitrification.entry_id 8XBG _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 8XBG _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ASP -8 ? A ASP 1 2 1 Y 1 A TYR -7 ? A TYR 2 3 1 Y 1 A LYS -6 ? A LYS 3 4 1 Y 1 A ASP -5 ? A ASP 4 5 1 Y 1 A ASP -4 ? A ASP 5 6 1 Y 1 A ASP -3 ? A ASP 6 7 1 Y 1 A ASP -2 ? A ASP 7 8 1 Y 1 A ALA -1 ? A ALA 8 9 1 Y 1 A MET 0 ? A MET 9 10 1 Y 1 A GLY 1 ? A GLY 10 11 1 Y 1 A ARG 2 ? A ARG 11 12 1 Y 1 A SER 3 ? A SER 12 13 1 Y 1 A HIS 4 ? A HIS 13 14 1 Y 1 A THR 5 ? A THR 14 15 1 Y 1 A ILE 6 ? A ILE 15 16 1 Y 1 A THR 7 ? A THR 16 17 1 Y 1 A MET 8 ? A MET 17 18 1 Y 1 A THR 9 ? A THR 18 19 1 Y 1 A THR 10 ? A THR 19 20 1 Y 1 A THR 11 ? A THR 20 21 1 Y 1 A SER 12 ? A SER 21 22 1 Y 1 A VAL 13 ? A VAL 22 23 1 Y 1 A SER 14 ? A SER 23 24 1 Y 1 A SER 15 ? A SER 24 25 1 Y 1 A TRP 16 ? A TRP 25 26 1 Y 1 A PRO 17 ? A PRO 26 27 1 Y 1 A TYR 18 ? A TYR 27 28 1 Y 1 A SER 19 ? A SER 28 29 1 Y 1 A SER 20 ? A SER 29 30 1 Y 1 A HIS 21 ? A HIS 30 31 1 Y 1 A ARG 22 ? A ARG 31 32 1 Y 1 A MET 23 ? A MET 32 33 1 Y 1 A ARG 24 ? A ARG 33 34 1 Y 1 A PHE 25 ? A PHE 34 35 1 Y 1 A ILE 26 ? A ILE 35 36 1 Y 1 A THR 27 ? A THR 36 37 1 Y 1 A ASN 28 ? A ASN 37 38 1 Y 1 A HIS 29 ? A HIS 38 39 1 Y 1 A SER 30 ? A SER 39 40 1 Y 1 A ASP 31 ? A ASP 40 41 1 Y 1 A GLN 32 ? A GLN 41 42 1 Y 1 A PRO 33 ? A PRO 42 43 1 Y 1 A PRO 34 ? A PRO 43 44 1 Y 1 A GLN 35 ? A GLN 44 45 1 Y 1 A ASN 36 ? A ASN 45 46 1 Y 1 A PHE 37 ? A PHE 46 47 1 Y 1 A SER 38 ? A SER 47 48 1 Y 1 A ALA 39 ? A ALA 48 49 1 Y 1 A THR 40 ? A THR 49 50 1 Y 1 A PRO 41 ? A PRO 50 51 1 Y 1 A ASN 42 ? A ASN 51 52 1 Y 1 A VAL 43 ? A VAL 52 53 1 Y 1 A THR 44 ? A THR 53 54 1 Y 1 A PHE 343 ? A PHE 352 55 1 Y 1 A ARG 344 ? A ARG 353 56 1 Y 1 A ARG 345 ? A ARG 354 57 1 Y 1 A PHE 346 ? A PHE 355 58 1 Y 1 A GLN 347 ? A GLN 356 59 1 Y 1 A GLY 348 ? A GLY 357 60 1 Y 1 A GLU 349 ? A GLU 358 61 1 Y 1 A PRO 350 ? A PRO 359 62 1 Y 1 A SER 351 ? A SER 360 63 1 Y 1 A ARG 352 ? A ARG 361 64 1 Y 1 A SER 353 ? A SER 362 65 1 Y 1 A GLU 354 ? A GLU 363 66 1 Y 1 A SER 355 ? A SER 364 67 1 Y 1 A THR 356 ? A THR 365 68 1 Y 1 A SER 357 ? A SER 366 69 1 Y 1 A GLU 358 ? A GLU 367 70 1 Y 1 A PHE 359 ? A PHE 368 71 1 Y 1 A LYS 360 ? A LYS 369 72 1 Y 1 A PRO 361 ? A PRO 370 73 1 Y 1 A GLY 362 ? A GLY 371 74 1 Y 1 A TYR 363 ? A TYR 372 75 1 Y 1 A SER 364 ? A SER 373 76 1 Y 1 A LEU 365 ? A LEU 374 77 1 Y 1 A HIS 366 ? A HIS 375 78 1 Y 1 A ASP 367 ? A ASP 376 79 1 Y 1 A THR 368 ? A THR 377 80 1 Y 1 A SER 369 ? A SER 378 81 1 Y 1 A VAL 370 ? A VAL 379 82 1 Y 1 A ALA 371 ? A ALA 380 83 1 Y 1 A VAL 372 ? A VAL 381 84 1 Y 1 A LYS 373 ? A LYS 382 85 1 Y 1 A ILE 374 ? A ILE 383 86 1 Y 1 A GLN 375 ? A GLN 384 87 1 Y 1 A SER 376 ? A SER 385 88 1 Y 1 A SER 377 ? A SER 386 89 1 Y 1 A SER 378 ? A SER 387 90 1 Y 1 A LYS 379 ? A LYS 388 91 1 Y 1 A SER 380 ? A SER 389 92 1 Y 1 A THR 381 ? A THR 390 93 1 Y 1 A GLU 382 ? A GLU 391 94 1 Y 1 A ASN 383 ? A ASN 392 95 1 Y 1 A LEU 384 ? A LEU 393 96 1 Y 1 A TYR 385 ? A TYR 394 97 1 Y 1 A PHE 386 ? A PHE 395 98 1 Y 1 A GLN 387 ? A GLN 396 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 KW0 C12 C N N 180 KW0 C11 C N N 181 KW0 C1 C N N 182 KW0 C2 C N N 183 KW0 C3 C N N 184 KW0 C4 C N N 185 KW0 C5 C N N 186 KW0 C6 C N N 187 KW0 C7 C N N 188 KW0 C8 C N N 189 KW0 C9 C N N 190 KW0 C10 C N N 191 KW0 C13 C N N 192 KW0 C14 C N N 193 KW0 C15 C N N 194 KW0 C16 C N N 195 KW0 C17 C N N 196 KW0 C18 C N N 197 KW0 O1 O N N 198 KW0 O2 O N N 199 KW0 C19 C N N 200 KW0 C20 C N R 201 KW0 C21 C N N 202 KW0 O3 O N N 203 KW0 C22 C N N 204 KW0 C23 C N N 205 KW0 O4 O N N 206 KW0 P1 P N N 207 KW0 O5 O N N 208 KW0 O6 O N N 209 KW0 O7 O N N 210 KW0 C24 C N N 211 KW0 C25 C N S 212 KW0 N1 N N N 213 KW0 C26 C N N 214 KW0 O8 O N N 215 KW0 O9 O N N 216 KW0 H1 H N N 217 KW0 H2 H N N 218 KW0 H3 H N N 219 KW0 H4 H N N 220 KW0 H5 H N N 221 KW0 H6 H N N 222 KW0 H7 H N N 223 KW0 H8 H N N 224 KW0 H9 H N N 225 KW0 H10 H N N 226 KW0 H11 H N N 227 KW0 H12 H N N 228 KW0 H13 H N N 229 KW0 H14 H N N 230 KW0 H15 H N N 231 KW0 H16 H N N 232 KW0 H17 H N N 233 KW0 H18 H N N 234 KW0 H19 H N N 235 KW0 H20 H N N 236 KW0 H21 H N N 237 KW0 H22 H N N 238 KW0 H23 H N N 239 KW0 H24 H N N 240 KW0 H25 H N N 241 KW0 H26 H N N 242 KW0 H27 H N N 243 KW0 H28 H N N 244 KW0 H29 H N N 245 KW0 H30 H N N 246 KW0 H31 H N N 247 KW0 H32 H N N 248 KW0 H33 H N N 249 KW0 H34 H N N 250 KW0 H35 H N N 251 KW0 H36 H N N 252 KW0 H37 H N N 253 KW0 H38 H N N 254 KW0 H39 H N N 255 KW0 H40 H N N 256 KW0 H41 H N N 257 KW0 H42 H N N 258 KW0 H43 H N N 259 KW0 H44 H N N 260 KW0 H45 H N N 261 KW0 H46 H N N 262 KW0 H47 H N N 263 KW0 H48 H N N 264 KW0 H49 H N N 265 KW0 H51 H N N 266 LEU N N N N 267 LEU CA C N S 268 LEU C C N N 269 LEU O O N N 270 LEU CB C N N 271 LEU CG C N N 272 LEU CD1 C N N 273 LEU CD2 C N N 274 LEU OXT O N N 275 LEU H H N N 276 LEU H2 H N N 277 LEU HA H N N 278 LEU HB2 H N N 279 LEU HB3 H N N 280 LEU HG H N N 281 LEU HD11 H N N 282 LEU HD12 H N N 283 LEU HD13 H N N 284 LEU HD21 H N N 285 LEU HD22 H N N 286 LEU HD23 H N N 287 LEU HXT H N N 288 LYS N N N N 289 LYS CA C N S 290 LYS C C N N 291 LYS O O N N 292 LYS CB C N N 293 LYS CG C N N 294 LYS CD C N N 295 LYS CE C N N 296 LYS NZ N N N 297 LYS OXT O N N 298 LYS H H N N 299 LYS H2 H N N 300 LYS HA H N N 301 LYS HB2 H N N 302 LYS HB3 H N N 303 LYS HG2 H N N 304 LYS HG3 H N N 305 LYS HD2 H N N 306 LYS HD3 H N N 307 LYS HE2 H N N 308 LYS HE3 H N N 309 LYS HZ1 H N N 310 LYS HZ2 H N N 311 LYS HZ3 H N N 312 LYS HXT H N N 313 MET N N N N 314 MET CA C N S 315 MET C C N N 316 MET O O N N 317 MET CB C N N 318 MET CG C N N 319 MET SD S N N 320 MET CE C N N 321 MET OXT O N N 322 MET H H N N 323 MET H2 H N N 324 MET HA H N N 325 MET HB2 H N N 326 MET HB3 H N N 327 MET HG2 H N N 328 MET HG3 H N N 329 MET HE1 H N N 330 MET HE2 H N N 331 MET HE3 H N N 332 MET HXT H N N 333 PHE N N N N 334 PHE CA C N S 335 PHE C C N N 336 PHE O O N N 337 PHE CB C N N 338 PHE CG C Y N 339 PHE CD1 C Y N 340 PHE CD2 C Y N 341 PHE CE1 C Y N 342 PHE CE2 C Y N 343 PHE CZ C Y N 344 PHE OXT O N N 345 PHE H H N N 346 PHE H2 H N N 347 PHE HA H N N 348 PHE HB2 H N N 349 PHE HB3 H N N 350 PHE HD1 H N N 351 PHE HD2 H N N 352 PHE HE1 H N N 353 PHE HE2 H N N 354 PHE HZ H N N 355 PHE HXT H N N 356 PRO N N N N 357 PRO CA C N S 358 PRO C C N N 359 PRO O O N N 360 PRO CB C N N 361 PRO CG C N N 362 PRO CD C N N 363 PRO OXT O N N 364 PRO H H N N 365 PRO HA H N N 366 PRO HB2 H N N 367 PRO HB3 H N N 368 PRO HG2 H N N 369 PRO HG3 H N N 370 PRO HD2 H N N 371 PRO HD3 H N N 372 PRO HXT H N N 373 SER N N N N 374 SER CA C N S 375 SER C C N N 376 SER O O N N 377 SER CB C N N 378 SER OG O N N 379 SER OXT O N N 380 SER H H N N 381 SER H2 H N N 382 SER HA H N N 383 SER HB2 H N N 384 SER HB3 H N N 385 SER HG H N N 386 SER HXT H N N 387 THR N N N N 388 THR CA C N S 389 THR C C N N 390 THR O O N N 391 THR CB C N R 392 THR OG1 O N N 393 THR CG2 C N N 394 THR OXT O N N 395 THR H H N N 396 THR H2 H N N 397 THR HA H N N 398 THR HB H N N 399 THR HG1 H N N 400 THR HG21 H N N 401 THR HG22 H N N 402 THR HG23 H N N 403 THR HXT H N N 404 TRP N N N N 405 TRP CA C N S 406 TRP C C N N 407 TRP O O N N 408 TRP CB C N N 409 TRP CG C Y N 410 TRP CD1 C Y N 411 TRP CD2 C Y N 412 TRP NE1 N Y N 413 TRP CE2 C Y N 414 TRP CE3 C Y N 415 TRP CZ2 C Y N 416 TRP CZ3 C Y N 417 TRP CH2 C Y N 418 TRP OXT O N N 419 TRP H H N N 420 TRP H2 H N N 421 TRP HA H N N 422 TRP HB2 H N N 423 TRP HB3 H N N 424 TRP HD1 H N N 425 TRP HE1 H N N 426 TRP HE3 H N N 427 TRP HZ2 H N N 428 TRP HZ3 H N N 429 TRP HH2 H N N 430 TRP HXT H N N 431 TYR N N N N 432 TYR CA C N S 433 TYR C C N N 434 TYR O O N N 435 TYR CB C N N 436 TYR CG C Y N 437 TYR CD1 C Y N 438 TYR CD2 C Y N 439 TYR CE1 C Y N 440 TYR CE2 C Y N 441 TYR CZ C Y N 442 TYR OH O N N 443 TYR OXT O N N 444 TYR H H N N 445 TYR H2 H N N 446 TYR HA H N N 447 TYR HB2 H N N 448 TYR HB3 H N N 449 TYR HD1 H N N 450 TYR HD2 H N N 451 TYR HE1 H N N 452 TYR HE2 H N N 453 TYR HH H N N 454 TYR HXT H N N 455 VAL N N N N 456 VAL CA C N S 457 VAL C C N N 458 VAL O O N N 459 VAL CB C N N 460 VAL CG1 C N N 461 VAL CG2 C N N 462 VAL OXT O N N 463 VAL H H N N 464 VAL H2 H N N 465 VAL HA H N N 466 VAL HB H N N 467 VAL HG11 H N N 468 VAL HG12 H N N 469 VAL HG13 H N N 470 VAL HG21 H N N 471 VAL HG22 H N N 472 VAL HG23 H N N 473 VAL HXT H N N 474 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 KW0 C1 C2 sing N N 171 KW0 C2 C3 sing N N 172 KW0 C3 C4 sing N N 173 KW0 C5 C4 sing N N 174 KW0 C5 C6 sing N N 175 KW0 C6 C7 sing N N 176 KW0 C7 C8 sing N N 177 KW0 C8 C9 sing N N 178 KW0 C9 C10 doub N Z 179 KW0 C10 C11 sing N N 180 KW0 C11 C12 sing N N 181 KW0 C13 C12 sing N N 182 KW0 C13 C14 sing N N 183 KW0 C15 C16 sing N N 184 KW0 C15 C14 sing N N 185 KW0 C17 C16 sing N N 186 KW0 C17 C18 sing N N 187 KW0 O1 C18 doub N N 188 KW0 O9 C26 doub N N 189 KW0 C18 O2 sing N N 190 KW0 C26 O8 sing N N 191 KW0 C26 C25 sing N N 192 KW0 O2 C19 sing N N 193 KW0 C25 N1 sing N N 194 KW0 C25 C24 sing N N 195 KW0 C19 C20 sing N N 196 KW0 C24 O7 sing N N 197 KW0 O7 P1 sing N N 198 KW0 C20 C21 sing N N 199 KW0 C20 O4 sing N N 200 KW0 O3 C22 sing N N 201 KW0 O3 C21 sing N N 202 KW0 C23 C22 sing N N 203 KW0 O4 P1 sing N N 204 KW0 P1 O6 doub N N 205 KW0 P1 O5 sing N N 206 KW0 C12 H1 sing N N 207 KW0 C12 H2 sing N N 208 KW0 C11 H3 sing N N 209 KW0 C11 H4 sing N N 210 KW0 C1 H5 sing N N 211 KW0 C1 H6 sing N N 212 KW0 C1 H7 sing N N 213 KW0 C2 H8 sing N N 214 KW0 C2 H9 sing N N 215 KW0 C3 H10 sing N N 216 KW0 C3 H11 sing N N 217 KW0 C4 H12 sing N N 218 KW0 C4 H13 sing N N 219 KW0 C5 H14 sing N N 220 KW0 C5 H15 sing N N 221 KW0 C6 H16 sing N N 222 KW0 C6 H17 sing N N 223 KW0 C7 H18 sing N N 224 KW0 C7 H19 sing N N 225 KW0 C8 H20 sing N N 226 KW0 C8 H21 sing N N 227 KW0 C9 H22 sing N N 228 KW0 C10 H23 sing N N 229 KW0 C13 H24 sing N N 230 KW0 C13 H25 sing N N 231 KW0 C14 H26 sing N N 232 KW0 C14 H27 sing N N 233 KW0 C15 H28 sing N N 234 KW0 C15 H29 sing N N 235 KW0 C16 H30 sing N N 236 KW0 C16 H31 sing N N 237 KW0 C17 H32 sing N N 238 KW0 C17 H33 sing N N 239 KW0 C19 H34 sing N N 240 KW0 C19 H35 sing N N 241 KW0 C20 H36 sing N N 242 KW0 C21 H37 sing N N 243 KW0 C21 H38 sing N N 244 KW0 C22 H39 sing N N 245 KW0 C22 H40 sing N N 246 KW0 C23 H41 sing N N 247 KW0 C23 H42 sing N N 248 KW0 C23 H43 sing N N 249 KW0 O5 H44 sing N N 250 KW0 C24 H45 sing N N 251 KW0 C24 H46 sing N N 252 KW0 C25 H47 sing N N 253 KW0 N1 H48 sing N N 254 KW0 N1 H49 sing N N 255 KW0 O8 H51 sing N N 256 LEU N CA sing N N 257 LEU N H sing N N 258 LEU N H2 sing N N 259 LEU CA C sing N N 260 LEU CA CB sing N N 261 LEU CA HA sing N N 262 LEU C O doub N N 263 LEU C OXT sing N N 264 LEU CB CG sing N N 265 LEU CB HB2 sing N N 266 LEU CB HB3 sing N N 267 LEU CG CD1 sing N N 268 LEU CG CD2 sing N N 269 LEU CG HG sing N N 270 LEU CD1 HD11 sing N N 271 LEU CD1 HD12 sing N N 272 LEU CD1 HD13 sing N N 273 LEU CD2 HD21 sing N N 274 LEU CD2 HD22 sing N N 275 LEU CD2 HD23 sing N N 276 LEU OXT HXT sing N N 277 LYS N CA sing N N 278 LYS N H sing N N 279 LYS N H2 sing N N 280 LYS CA C sing N N 281 LYS CA CB sing N N 282 LYS CA HA sing N N 283 LYS C O doub N N 284 LYS C OXT sing N N 285 LYS CB CG sing N N 286 LYS CB HB2 sing N N 287 LYS CB HB3 sing N N 288 LYS CG CD sing N N 289 LYS CG HG2 sing N N 290 LYS CG HG3 sing N N 291 LYS CD CE sing N N 292 LYS CD HD2 sing N N 293 LYS CD HD3 sing N N 294 LYS CE NZ sing N N 295 LYS CE HE2 sing N N 296 LYS CE HE3 sing N N 297 LYS NZ HZ1 sing N N 298 LYS NZ HZ2 sing N N 299 LYS NZ HZ3 sing N N 300 LYS OXT HXT sing N N 301 MET N CA sing N N 302 MET N H sing N N 303 MET N H2 sing N N 304 MET CA C sing N N 305 MET CA CB sing N N 306 MET CA HA sing N N 307 MET C O doub N N 308 MET C OXT sing N N 309 MET CB CG sing N N 310 MET CB HB2 sing N N 311 MET CB HB3 sing N N 312 MET CG SD sing N N 313 MET CG HG2 sing N N 314 MET CG HG3 sing N N 315 MET SD CE sing N N 316 MET CE HE1 sing N N 317 MET CE HE2 sing N N 318 MET CE HE3 sing N N 319 MET OXT HXT sing N N 320 PHE N CA sing N N 321 PHE N H sing N N 322 PHE N H2 sing N N 323 PHE CA C sing N N 324 PHE CA CB sing N N 325 PHE CA HA sing N N 326 PHE C O doub N N 327 PHE C OXT sing N N 328 PHE CB CG sing N N 329 PHE CB HB2 sing N N 330 PHE CB HB3 sing N N 331 PHE CG CD1 doub Y N 332 PHE CG CD2 sing Y N 333 PHE CD1 CE1 sing Y N 334 PHE CD1 HD1 sing N N 335 PHE CD2 CE2 doub Y N 336 PHE CD2 HD2 sing N N 337 PHE CE1 CZ doub Y N 338 PHE CE1 HE1 sing N N 339 PHE CE2 CZ sing Y N 340 PHE CE2 HE2 sing N N 341 PHE CZ HZ sing N N 342 PHE OXT HXT sing N N 343 PRO N CA sing N N 344 PRO N CD sing N N 345 PRO N H sing N N 346 PRO CA C sing N N 347 PRO CA CB sing N N 348 PRO CA HA sing N N 349 PRO C O doub N N 350 PRO C OXT sing N N 351 PRO CB CG sing N N 352 PRO CB HB2 sing N N 353 PRO CB HB3 sing N N 354 PRO CG CD sing N N 355 PRO CG HG2 sing N N 356 PRO CG HG3 sing N N 357 PRO CD HD2 sing N N 358 PRO CD HD3 sing N N 359 PRO OXT HXT sing N N 360 SER N CA sing N N 361 SER N H sing N N 362 SER N H2 sing N N 363 SER CA C sing N N 364 SER CA CB sing N N 365 SER CA HA sing N N 366 SER C O doub N N 367 SER C OXT sing N N 368 SER CB OG sing N N 369 SER CB HB2 sing N N 370 SER CB HB3 sing N N 371 SER OG HG sing N N 372 SER OXT HXT sing N N 373 THR N CA sing N N 374 THR N H sing N N 375 THR N H2 sing N N 376 THR CA C sing N N 377 THR CA CB sing N N 378 THR CA HA sing N N 379 THR C O doub N N 380 THR C OXT sing N N 381 THR CB OG1 sing N N 382 THR CB CG2 sing N N 383 THR CB HB sing N N 384 THR OG1 HG1 sing N N 385 THR CG2 HG21 sing N N 386 THR CG2 HG22 sing N N 387 THR CG2 HG23 sing N N 388 THR OXT HXT sing N N 389 TRP N CA sing N N 390 TRP N H sing N N 391 TRP N H2 sing N N 392 TRP CA C sing N N 393 TRP CA CB sing N N 394 TRP CA HA sing N N 395 TRP C O doub N N 396 TRP C OXT sing N N 397 TRP CB CG sing N N 398 TRP CB HB2 sing N N 399 TRP CB HB3 sing N N 400 TRP CG CD1 doub Y N 401 TRP CG CD2 sing Y N 402 TRP CD1 NE1 sing Y N 403 TRP CD1 HD1 sing N N 404 TRP CD2 CE2 doub Y N 405 TRP CD2 CE3 sing Y N 406 TRP NE1 CE2 sing Y N 407 TRP NE1 HE1 sing N N 408 TRP CE2 CZ2 sing Y N 409 TRP CE3 CZ3 doub Y N 410 TRP CE3 HE3 sing N N 411 TRP CZ2 CH2 doub Y N 412 TRP CZ2 HZ2 sing N N 413 TRP CZ3 CH2 sing Y N 414 TRP CZ3 HZ3 sing N N 415 TRP CH2 HH2 sing N N 416 TRP OXT HXT sing N N 417 TYR N CA sing N N 418 TYR N H sing N N 419 TYR N H2 sing N N 420 TYR CA C sing N N 421 TYR CA CB sing N N 422 TYR CA HA sing N N 423 TYR C O doub N N 424 TYR C OXT sing N N 425 TYR CB CG sing N N 426 TYR CB HB2 sing N N 427 TYR CB HB3 sing N N 428 TYR CG CD1 doub Y N 429 TYR CG CD2 sing Y N 430 TYR CD1 CE1 sing Y N 431 TYR CD1 HD1 sing N N 432 TYR CD2 CE2 doub Y N 433 TYR CD2 HD2 sing N N 434 TYR CE1 CZ doub Y N 435 TYR CE1 HE1 sing N N 436 TYR CE2 CZ sing Y N 437 TYR CE2 HE2 sing N N 438 TYR CZ OH sing N N 439 TYR OH HH sing N N 440 TYR OXT HXT sing N N 441 VAL N CA sing N N 442 VAL N H sing N N 443 VAL N H2 sing N N 444 VAL CA C sing N N 445 VAL CA CB sing N N 446 VAL CA HA sing N N 447 VAL C O doub N N 448 VAL C OXT sing N N 449 VAL CB CG1 sing N N 450 VAL CB CG2 sing N N 451 VAL CB HB sing N N 452 VAL CG1 HG11 sing N N 453 VAL CG1 HG12 sing N N 454 VAL CG1 HG13 sing N N 455 VAL CG2 HG21 sing N N 456 VAL CG2 HG22 sing N N 457 VAL CG2 HG23 sing N N 458 VAL OXT HXT sing N N 459 # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.units ? _em_entity_assembly_molwt.value ? # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 7108 _em_entity_assembly_recombinant.organism 'Spodoptera frugiperda' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 50 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? ? ? 'IMAGE ACQUISITION' ? 2 ? ? 1 ? ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? ? ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? ? ? ? ? 'MODEL REFINEMENT' ? 8 ? ? ? ? ? OTHER ? 9 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? RECONSTRUCTION ? 13 1 ? ? ? ? 'VOLUME SELECTION' ? 14 1 1 1 ? ? 'SERIES ALIGNMENT' ? 15 1 1 1 ? ? 'MOLECULAR REPLACEMENT' ? 16 1 1 1 ? ? 'LATTICE DISTORTION CORRECTION' ? 17 1 1 1 ? ? 'SYMMETRY DETERMINATION' ? 18 1 1 1 ? ? 'CRYSTALLOGRAPHY MERGING' ? 19 1 1 1 ? ? # _em_specimen.concentration 12 _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'Japan Society for the Promotion of Science (JSPS)' _pdbx_audit_support.country Japan _pdbx_audit_support.grant_number 21H05037 _pdbx_audit_support.ordinal 1 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id KW0 _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id KW0 _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _atom_sites.entry_id 8XBG _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O P S # loop_