HEADER DNA BINDING PROTEIN/DNA 07-DEC-23 8XBW TITLE THE CRYO-EM STRUCTURE OF THE RAD51 N-TERMINAL LOBE DOMAIN BOUND TO THE TITLE 2 HISTONE H4 TAIL OF THE NUCLEOSOME COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE H3.1; COMPND 3 CHAIN: E; COMPND 4 SYNONYM: HISTONE H3/A,HISTONE H3/B,HISTONE H3/C,HISTONE H3/D,HISTONE COMPND 5 H3/F,HISTONE H3/H,HISTONE H3/I,HISTONE H3/J,HISTONE H3/K,HISTONE COMPND 6 H3/L; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: HISTONE H4; COMPND 10 CHAIN: F; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (5'- COMPND 14 D(P*AP*CP*CP*GP*CP*TP*TP*AP*AP*AP*CP*GP*CP*AP*CP*GP*TP*A)-3'); COMPND 15 CHAIN: I; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 4; COMPND 18 MOLECULE: DNA (5'- COMPND 19 D(P*TP*AP*CP*GP*TP*GP*CP*GP*TP*TP*TP*AP*AP*GP*CP*GP*GP*T)-3'); COMPND 20 CHAIN: J; COMPND 21 ENGINEERED: YES; COMPND 22 MOL_ID: 5; COMPND 23 MOLECULE: DNA REPAIR PROTEIN RAD51 HOMOLOG 1; COMPND 24 CHAIN: L; COMPND 25 SYNONYM: HSRAD51,HRAD51,RAD51 HOMOLOG A; COMPND 26 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: H3C1, H3FA, HIST1H3A, H3C2, H3FL, HIST1H3B, H3C3, H3FC SOURCE 6 HIST1H3C, H3C4, H3FB, HIST1H3D, H3C6, H3FD, HIST1H3E, H3C7, H3FI, SOURCE 7 HIST1H3F, H3C8, H3FH, HIST1H3G, H3C10, H3FK, HIST1H3H, H3C11, H3FF, SOURCE 8 HIST1H3I, H3C12, H3FJ, HIST1H3J; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: H4C1; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 MOL_ID: 3; SOURCE 19 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 20 ORGANISM_TAXID: 32630; SOURCE 21 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 22 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 23 MOL_ID: 4; SOURCE 24 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 25 ORGANISM_TAXID: 32630; SOURCE 26 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 27 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 28 MOL_ID: 5; SOURCE 29 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 30 ORGANISM_COMMON: HUMAN; SOURCE 31 ORGANISM_TAXID: 9606; SOURCE 32 GENE: RAD51, RAD51A, RECA; SOURCE 33 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 34 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NUCLEOSOME, RECOMBINASE, DNA BINDING PROTEIN-DNA COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR T.SHIOI,S.HATAZAWA,M.OGASAWARA,Y.TAKIZAWA,H.KURUMIZAKA REVDAT 5 08-MAY-24 8XBW 1 JRNL REVDAT 4 24-APR-24 8XBW 1 JRNL REVDAT 3 17-APR-24 8XBW 1 JRNL REVDAT 2 03-APR-24 8XBW 1 JRNL REVDAT 1 27-MAR-24 8XBW 0 JRNL AUTH T.SHIOI,S.HATAZAWA,E.OYA,N.HOSOYA,W.KOBAYASHI,M.OGASAWARA, JRNL AUTH 2 T.KOBAYASHI,Y.TAKIZAWA,H.KURUMIZAKA JRNL TITL CRYO-EM STRUCTURES OF RAD51 ASSEMBLED ON NUCLEOSOMES JRNL TITL 2 CONTAINING A DSB SITE. JRNL REF NATURE V. 628 212 2024 JRNL REFN ESSN 1476-4687 JRNL PMID 38509361 JRNL DOI 10.1038/S41586-024-07196-4 REMARK 2 REMARK 2 RESOLUTION. 2.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.890 REMARK 3 NUMBER OF PARTICLES : 411212 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8XBW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-DEC-23. REMARK 100 THE DEPOSITION ID IS D_1300043121. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : RAD51-NUCLEOSOME COMPLEX REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 BIOQUANTUM (6K X REMARK 245 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 6000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, I, J, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY E -3 REMARK 465 SER E -2 REMARK 465 HIS E -1 REMARK 465 MET E 0 REMARK 465 ALA E 1 REMARK 465 ARG E 2 REMARK 465 THR E 3 REMARK 465 LYS E 4 REMARK 465 GLN E 5 REMARK 465 THR E 6 REMARK 465 ALA E 7 REMARK 465 ARG E 8 REMARK 465 LYS E 9 REMARK 465 SER E 10 REMARK 465 THR E 11 REMARK 465 GLY E 12 REMARK 465 GLY E 13 REMARK 465 LYS E 14 REMARK 465 ALA E 15 REMARK 465 PRO E 16 REMARK 465 ARG E 17 REMARK 465 LYS E 18 REMARK 465 GLN E 19 REMARK 465 LEU E 20 REMARK 465 ALA E 21 REMARK 465 THR E 22 REMARK 465 LYS E 23 REMARK 465 ALA E 24 REMARK 465 ALA E 25 REMARK 465 ARG E 26 REMARK 465 LYS E 27 REMARK 465 SER E 28 REMARK 465 ALA E 29 REMARK 465 PRO E 30 REMARK 465 ALA E 31 REMARK 465 THR E 32 REMARK 465 GLY E 33 REMARK 465 GLY E 34 REMARK 465 VAL E 35 REMARK 465 LYS E 36 REMARK 465 LYS E 37 REMARK 465 ARG E 134 REMARK 465 ALA E 135 REMARK 465 GLY F -3 REMARK 465 SER F -2 REMARK 465 HIS F -1 REMARK 465 MET F 0 REMARK 465 SER F 1 REMARK 465 GLY F 2 REMARK 465 ARG F 3 REMARK 465 GLY F 4 REMARK 465 LYS F 5 REMARK 465 GLY F 6 REMARK 465 GLY F 7 REMARK 465 LYS F 8 REMARK 465 GLY F 9 REMARK 465 LEU F 10 REMARK 465 GLY F 11 REMARK 465 LYS F 12 REMARK 465 GLY F 13 REMARK 465 GLY F 14 REMARK 465 ALA F 15 REMARK 465 LYS F 16 REMARK 465 ARG F 17 REMARK 465 GLY F 102 REMARK 465 DA I 1 REMARK 465 DT I 2 REMARK 465 DC I 3 REMARK 465 DA I 4 REMARK 465 DG I 5 REMARK 465 DA I 6 REMARK 465 DA I 7 REMARK 465 DT I 8 REMARK 465 DC I 9 REMARK 465 DC I 10 REMARK 465 DC I 11 REMARK 465 DG I 12 REMARK 465 DG I 13 REMARK 465 DT I 14 REMARK 465 DG I 15 REMARK 465 DC I 16 REMARK 465 DC I 17 REMARK 465 DG I 18 REMARK 465 DA I 19 REMARK 465 DG I 20 REMARK 465 DG I 21 REMARK 465 DC I 22 REMARK 465 DC I 23 REMARK 465 DG I 24 REMARK 465 DC I 25 REMARK 465 DT I 26 REMARK 465 DC I 27 REMARK 465 DA I 28 REMARK 465 DA I 29 REMARK 465 DT I 30 REMARK 465 DT I 31 REMARK 465 DG I 32 REMARK 465 DG I 33 REMARK 465 DT I 34 REMARK 465 DC I 35 REMARK 465 DG I 36 REMARK 465 DT I 37 REMARK 465 DA I 38 REMARK 465 DG I 39 REMARK 465 DA I 40 REMARK 465 DC I 41 REMARK 465 DA I 42 REMARK 465 DG I 43 REMARK 465 DC I 44 REMARK 465 DT I 45 REMARK 465 DC I 46 REMARK 465 DT I 47 REMARK 465 DA I 48 REMARK 465 DG I 49 REMARK 465 DC I 50 REMARK 465 DC I 69 REMARK 465 DG I 70 REMARK 465 DC I 71 REMARK 465 DG I 72 REMARK 465 DC I 73 REMARK 465 DT I 74 REMARK 465 DG I 75 REMARK 465 DT I 76 REMARK 465 DC I 77 REMARK 465 DC I 78 REMARK 465 DC I 79 REMARK 465 DC I 80 REMARK 465 DC I 81 REMARK 465 DG I 82 REMARK 465 DC I 83 REMARK 465 DG I 84 REMARK 465 DT I 85 REMARK 465 DT I 86 REMARK 465 DT I 87 REMARK 465 DT I 88 REMARK 465 DA I 89 REMARK 465 DA I 90 REMARK 465 DC I 91 REMARK 465 DC I 92 REMARK 465 DG I 93 REMARK 465 DC I 94 REMARK 465 DC I 95 REMARK 465 DA I 96 REMARK 465 DA I 97 REMARK 465 DG I 98 REMARK 465 DG I 99 REMARK 465 DG I 100 REMARK 465 DG I 101 REMARK 465 DA I 102 REMARK 465 DT I 103 REMARK 465 DT I 104 REMARK 465 DA I 105 REMARK 465 DC I 106 REMARK 465 DA I 107 REMARK 465 DC I 108 REMARK 465 DC I 109 REMARK 465 DC I 110 REMARK 465 DA I 111 REMARK 465 DA I 112 REMARK 465 DG I 113 REMARK 465 DA I 114 REMARK 465 DC I 115 REMARK 465 DA I 116 REMARK 465 DC I 117 REMARK 465 DC I 118 REMARK 465 DA I 119 REMARK 465 DG I 120 REMARK 465 DG I 121 REMARK 465 DC I 122 REMARK 465 DA I 123 REMARK 465 DC I 124 REMARK 465 DG I 125 REMARK 465 DA I 126 REMARK 465 DG I 127 REMARK 465 DA I 128 REMARK 465 DC I 129 REMARK 465 DA I 130 REMARK 465 DG I 131 REMARK 465 DA I 132 REMARK 465 DA I 133 REMARK 465 DA I 134 REMARK 465 DA I 135 REMARK 465 DA I 136 REMARK 465 DA I 137 REMARK 465 DA I 138 REMARK 465 DC I 139 REMARK 465 DA I 140 REMARK 465 DA I 141 REMARK 465 DC I 142 REMARK 465 DG I 143 REMARK 465 DA I 144 REMARK 465 DA I 145 REMARK 465 DA I 146 REMARK 465 DA I 147 REMARK 465 DC I 148 REMARK 465 DG I 149 REMARK 465 DG I 150 REMARK 465 DC I 151 REMARK 465 DC I 152 REMARK 465 DA I 153 REMARK 465 DC I 154 REMARK 465 DC I 155 REMARK 465 DA I 156 REMARK 465 DT J 1 REMARK 465 DG J 2 REMARK 465 DG J 3 REMARK 465 DC J 4 REMARK 465 DC J 5 REMARK 465 DG J 6 REMARK 465 DT J 7 REMARK 465 DT J 8 REMARK 465 DT J 9 REMARK 465 DT J 10 REMARK 465 DC J 11 REMARK 465 DG J 12 REMARK 465 DT J 13 REMARK 465 DT J 14 REMARK 465 DG J 15 REMARK 465 DT J 16 REMARK 465 DT J 17 REMARK 465 DT J 18 REMARK 465 DT J 19 REMARK 465 DT J 20 REMARK 465 DT J 21 REMARK 465 DT J 22 REMARK 465 DC J 23 REMARK 465 DT J 24 REMARK 465 DG J 25 REMARK 465 DT J 26 REMARK 465 DC J 27 REMARK 465 DT J 28 REMARK 465 DC J 29 REMARK 465 DG J 30 REMARK 465 DT J 31 REMARK 465 DG J 32 REMARK 465 DC J 33 REMARK 465 DC J 34 REMARK 465 DT J 35 REMARK 465 DG J 36 REMARK 465 DG J 37 REMARK 465 DT J 38 REMARK 465 DG J 39 REMARK 465 DT J 40 REMARK 465 DC J 41 REMARK 465 DT J 42 REMARK 465 DT J 43 REMARK 465 DG J 44 REMARK 465 DG J 45 REMARK 465 DG J 46 REMARK 465 DT J 47 REMARK 465 DG J 48 REMARK 465 DT J 49 REMARK 465 DA J 50 REMARK 465 DA J 51 REMARK 465 DT J 52 REMARK 465 DC J 53 REMARK 465 DC J 54 REMARK 465 DC J 55 REMARK 465 DC J 56 REMARK 465 DT J 57 REMARK 465 DT J 58 REMARK 465 DG J 59 REMARK 465 DG J 60 REMARK 465 DC J 61 REMARK 465 DG J 62 REMARK 465 DG J 63 REMARK 465 DT J 64 REMARK 465 DT J 65 REMARK 465 DA J 66 REMARK 465 DA J 67 REMARK 465 DA J 68 REMARK 465 DA J 69 REMARK 465 DC J 70 REMARK 465 DG J 71 REMARK 465 DC J 72 REMARK 465 DG J 73 REMARK 465 DG J 74 REMARK 465 DG J 75 REMARK 465 DG J 76 REMARK 465 DG J 77 REMARK 465 DA J 78 REMARK 465 DC J 79 REMARK 465 DA J 80 REMARK 465 DG J 81 REMARK 465 DC J 82 REMARK 465 DG J 83 REMARK 465 DC J 84 REMARK 465 DG J 85 REMARK 465 DG J 104 REMARK 465 DC J 105 REMARK 465 DT J 106 REMARK 465 DA J 107 REMARK 465 DG J 108 REMARK 465 DA J 109 REMARK 465 DG J 110 REMARK 465 DC J 111 REMARK 465 DT J 112 REMARK 465 DG J 113 REMARK 465 DT J 114 REMARK 465 DC J 115 REMARK 465 DT J 116 REMARK 465 DA J 117 REMARK 465 DC J 118 REMARK 465 DG J 119 REMARK 465 DA J 120 REMARK 465 DC J 121 REMARK 465 DC J 122 REMARK 465 DA J 123 REMARK 465 DA J 124 REMARK 465 DT J 125 REMARK 465 DT J 126 REMARK 465 DG J 127 REMARK 465 DA J 128 REMARK 465 DG J 129 REMARK 465 DC J 130 REMARK 465 DG J 131 REMARK 465 DG J 132 REMARK 465 DC J 133 REMARK 465 DC J 134 REMARK 465 DT J 135 REMARK 465 DC J 136 REMARK 465 DG J 137 REMARK 465 DG J 138 REMARK 465 DC J 139 REMARK 465 DA J 140 REMARK 465 DC J 141 REMARK 465 DC J 142 REMARK 465 DG J 143 REMARK 465 DG J 144 REMARK 465 DG J 145 REMARK 465 DA J 146 REMARK 465 DT J 147 REMARK 465 DT J 148 REMARK 465 DC J 149 REMARK 465 DT J 150 REMARK 465 DG J 151 REMARK 465 DA J 152 REMARK 465 DT J 153 REMARK 465 GLY L -2 REMARK 465 SER L -1 REMARK 465 HIS L 0 REMARK 465 MET L 1 REMARK 465 ALA L 2 REMARK 465 MET L 3 REMARK 465 GLN L 4 REMARK 465 MET L 5 REMARK 465 GLN L 6 REMARK 465 LEU L 7 REMARK 465 GLU L 8 REMARK 465 ALA L 9 REMARK 465 ASN L 10 REMARK 465 ALA L 11 REMARK 465 ASP L 12 REMARK 465 THR L 13 REMARK 465 SER L 14 REMARK 465 VAL L 15 REMARK 465 GLU L 16 REMARK 465 GLU L 17 REMARK 465 GLU L 18 REMARK 465 SER L 19 REMARK 465 PHE L 20 REMARK 465 PRO L 83 REMARK 465 MET L 84 REMARK 465 GLY L 85 REMARK 465 PHE L 86 REMARK 465 THR L 87 REMARK 465 THR L 88 REMARK 465 ALA L 89 REMARK 465 THR L 90 REMARK 465 GLU L 91 REMARK 465 PHE L 92 REMARK 465 HIS L 93 REMARK 465 GLN L 94 REMARK 465 ARG L 95 REMARK 465 ARG L 96 REMARK 465 SER L 97 REMARK 465 GLU L 98 REMARK 465 ILE L 99 REMARK 465 ILE L 100 REMARK 465 GLN L 101 REMARK 465 ILE L 102 REMARK 465 THR L 103 REMARK 465 THR L 104 REMARK 465 GLY L 105 REMARK 465 SER L 106 REMARK 465 LYS L 107 REMARK 465 GLU L 108 REMARK 465 LEU L 109 REMARK 465 ASP L 110 REMARK 465 LYS L 111 REMARK 465 LEU L 112 REMARK 465 LEU L 113 REMARK 465 GLN L 114 REMARK 465 GLY L 115 REMARK 465 GLY L 116 REMARK 465 ILE L 117 REMARK 465 GLU L 118 REMARK 465 THR L 119 REMARK 465 GLY L 120 REMARK 465 SER L 121 REMARK 465 ILE L 122 REMARK 465 THR L 123 REMARK 465 GLU L 124 REMARK 465 MET L 125 REMARK 465 PHE L 126 REMARK 465 GLY L 127 REMARK 465 GLU L 128 REMARK 465 PHE L 129 REMARK 465 ARG L 130 REMARK 465 THR L 131 REMARK 465 GLY L 132 REMARK 465 LYS L 133 REMARK 465 THR L 134 REMARK 465 GLN L 135 REMARK 465 ILE L 136 REMARK 465 CYS L 137 REMARK 465 HIS L 138 REMARK 465 THR L 139 REMARK 465 LEU L 140 REMARK 465 ALA L 141 REMARK 465 VAL L 142 REMARK 465 THR L 143 REMARK 465 CYS L 144 REMARK 465 GLN L 145 REMARK 465 LEU L 146 REMARK 465 PRO L 147 REMARK 465 ILE L 148 REMARK 465 ASP L 149 REMARK 465 ARG L 150 REMARK 465 GLY L 151 REMARK 465 GLY L 152 REMARK 465 GLY L 153 REMARK 465 GLU L 154 REMARK 465 GLY L 155 REMARK 465 LYS L 156 REMARK 465 ALA L 157 REMARK 465 MET L 158 REMARK 465 TYR L 159 REMARK 465 ILE L 160 REMARK 465 ASP L 161 REMARK 465 THR L 162 REMARK 465 GLU L 163 REMARK 465 GLY L 164 REMARK 465 THR L 165 REMARK 465 PHE L 166 REMARK 465 ARG L 167 REMARK 465 PRO L 168 REMARK 465 GLU L 169 REMARK 465 ARG L 170 REMARK 465 LEU L 171 REMARK 465 LEU L 172 REMARK 465 ALA L 173 REMARK 465 VAL L 174 REMARK 465 ALA L 175 REMARK 465 GLU L 176 REMARK 465 ARG L 177 REMARK 465 TYR L 178 REMARK 465 GLY L 179 REMARK 465 LEU L 180 REMARK 465 SER L 181 REMARK 465 GLY L 182 REMARK 465 SER L 183 REMARK 465 ASP L 184 REMARK 465 VAL L 185 REMARK 465 LEU L 186 REMARK 465 ASP L 187 REMARK 465 ASN L 188 REMARK 465 VAL L 189 REMARK 465 ALA L 190 REMARK 465 TYR L 191 REMARK 465 ALA L 192 REMARK 465 ARG L 193 REMARK 465 ALA L 194 REMARK 465 PHE L 195 REMARK 465 ASN L 196 REMARK 465 THR L 197 REMARK 465 ASP L 198 REMARK 465 HIS L 199 REMARK 465 GLN L 200 REMARK 465 THR L 201 REMARK 465 GLN L 202 REMARK 465 LEU L 203 REMARK 465 LEU L 204 REMARK 465 TYR L 205 REMARK 465 GLN L 206 REMARK 465 ALA L 207 REMARK 465 SER L 208 REMARK 465 ALA L 209 REMARK 465 MET L 210 REMARK 465 MET L 211 REMARK 465 VAL L 212 REMARK 465 GLU L 213 REMARK 465 SER L 214 REMARK 465 ARG L 215 REMARK 465 TYR L 216 REMARK 465 ALA L 217 REMARK 465 LEU L 218 REMARK 465 LEU L 219 REMARK 465 ILE L 220 REMARK 465 VAL L 221 REMARK 465 ASP L 222 REMARK 465 SER L 223 REMARK 465 ALA L 224 REMARK 465 THR L 225 REMARK 465 ALA L 226 REMARK 465 LEU L 227 REMARK 465 TYR L 228 REMARK 465 ARG L 229 REMARK 465 THR L 230 REMARK 465 ASP L 231 REMARK 465 TYR L 232 REMARK 465 SER L 233 REMARK 465 GLY L 234 REMARK 465 ARG L 235 REMARK 465 GLY L 236 REMARK 465 GLU L 237 REMARK 465 LEU L 238 REMARK 465 SER L 239 REMARK 465 ALA L 240 REMARK 465 ARG L 241 REMARK 465 GLN L 242 REMARK 465 MET L 243 REMARK 465 HIS L 244 REMARK 465 LEU L 245 REMARK 465 ALA L 246 REMARK 465 ARG L 247 REMARK 465 PHE L 248 REMARK 465 LEU L 249 REMARK 465 ARG L 250 REMARK 465 MET L 251 REMARK 465 LEU L 252 REMARK 465 LEU L 253 REMARK 465 ARG L 254 REMARK 465 LEU L 255 REMARK 465 ALA L 256 REMARK 465 ASP L 257 REMARK 465 GLU L 258 REMARK 465 PHE L 259 REMARK 465 GLY L 260 REMARK 465 VAL L 261 REMARK 465 ALA L 262 REMARK 465 VAL L 263 REMARK 465 VAL L 264 REMARK 465 ILE L 265 REMARK 465 THR L 266 REMARK 465 ASN L 267 REMARK 465 GLN L 268 REMARK 465 VAL L 269 REMARK 465 VAL L 270 REMARK 465 ALA L 271 REMARK 465 GLN L 272 REMARK 465 VAL L 273 REMARK 465 ASP L 274 REMARK 465 GLY L 275 REMARK 465 ALA L 276 REMARK 465 ALA L 277 REMARK 465 MET L 278 REMARK 465 PHE L 279 REMARK 465 ALA L 280 REMARK 465 ALA L 281 REMARK 465 ASP L 282 REMARK 465 PRO L 283 REMARK 465 LYS L 284 REMARK 465 LYS L 285 REMARK 465 PRO L 286 REMARK 465 ILE L 287 REMARK 465 GLY L 288 REMARK 465 GLY L 289 REMARK 465 ASN L 290 REMARK 465 ILE L 291 REMARK 465 ILE L 292 REMARK 465 ALA L 293 REMARK 465 HIS L 294 REMARK 465 ALA L 295 REMARK 465 SER L 296 REMARK 465 THR L 297 REMARK 465 THR L 298 REMARK 465 ARG L 299 REMARK 465 LEU L 300 REMARK 465 TYR L 301 REMARK 465 LEU L 302 REMARK 465 ARG L 303 REMARK 465 LYS L 304 REMARK 465 GLY L 305 REMARK 465 ARG L 306 REMARK 465 GLY L 307 REMARK 465 GLU L 308 REMARK 465 THR L 309 REMARK 465 ARG L 310 REMARK 465 ILE L 311 REMARK 465 CYS L 312 REMARK 465 LYS L 313 REMARK 465 ILE L 314 REMARK 465 TYR L 315 REMARK 465 ASP L 316 REMARK 465 SER L 317 REMARK 465 PRO L 318 REMARK 465 CYS L 319 REMARK 465 LEU L 320 REMARK 465 PRO L 321 REMARK 465 GLU L 322 REMARK 465 ALA L 323 REMARK 465 GLU L 324 REMARK 465 ALA L 325 REMARK 465 MET L 326 REMARK 465 PHE L 327 REMARK 465 ALA L 328 REMARK 465 ILE L 329 REMARK 465 ASN L 330 REMARK 465 ALA L 331 REMARK 465 ASP L 332 REMARK 465 GLY L 333 REMARK 465 VAL L 334 REMARK 465 GLY L 335 REMARK 465 ASP L 336 REMARK 465 ALA L 337 REMARK 465 LYS L 338 REMARK 465 ASP L 339 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG E 40 O2 DT J 90 1.15 REMARK 500 NH1 ARG E 40 C2 DT J 90 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA I 51 C4 - C5 - C6 ANGL. DEV. = -3.2 DEGREES REMARK 500 DA I 51 C5 - C6 - N1 ANGL. DEV. = 3.9 DEGREES REMARK 500 DA I 51 N1 - C6 - N6 ANGL. DEV. = -5.0 DEGREES REMARK 500 DC I 52 O4' - C1' - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 DC I 52 N3 - C2 - O2 ANGL. DEV. = -4.4 DEGREES REMARK 500 DT I 57 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DG J 102 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-38231 RELATED DB: EMDB REMARK 900 THE CRYO-EM STRUCTURE OF THE RAD51 N-TERMINAL LOBE DOMAIN BOUND TO REMARK 900 THE HISTONE H4 TAIL OF THE NUCLEOSOME DBREF 8XBW E 0 135 UNP P68431 H31_HUMAN 1 136 DBREF 8XBW F 0 102 UNP P62805 H4_HUMAN 1 103 DBREF 8XBW I 1 156 PDB 8XBW 8XBW 1 156 DBREF 8XBW J 1 153 PDB 8XBW 8XBW 1 153 DBREF 8XBW L 1 339 UNP Q06609 RAD51_HUMAN 1 339 SEQADV 8XBW GLY E -3 UNP P68431 EXPRESSION TAG SEQADV 8XBW SER E -2 UNP P68431 EXPRESSION TAG SEQADV 8XBW HIS E -1 UNP P68431 EXPRESSION TAG SEQADV 8XBW GLY F -3 UNP P62805 EXPRESSION TAG SEQADV 8XBW SER F -2 UNP P62805 EXPRESSION TAG SEQADV 8XBW HIS F -1 UNP P62805 EXPRESSION TAG SEQADV 8XBW GLY L -2 UNP Q06609 EXPRESSION TAG SEQADV 8XBW SER L -1 UNP Q06609 EXPRESSION TAG SEQADV 8XBW HIS L 0 UNP Q06609 EXPRESSION TAG SEQRES 1 E 139 GLY SER HIS MET ALA ARG THR LYS GLN THR ALA ARG LYS SEQRES 2 E 139 SER THR GLY GLY LYS ALA PRO ARG LYS GLN LEU ALA THR SEQRES 3 E 139 LYS ALA ALA ARG LYS SER ALA PRO ALA THR GLY GLY VAL SEQRES 4 E 139 LYS LYS PRO HIS ARG TYR ARG PRO GLY THR VAL ALA LEU SEQRES 5 E 139 ARG GLU ILE ARG ARG TYR GLN LYS SER THR GLU LEU LEU SEQRES 6 E 139 ILE ARG LYS LEU PRO PHE GLN ARG LEU VAL ARG GLU ILE SEQRES 7 E 139 ALA GLN ASP PHE LYS THR ASP LEU ARG PHE GLN SER SER SEQRES 8 E 139 ALA VAL MET ALA LEU GLN GLU ALA CYS GLU ALA TYR LEU SEQRES 9 E 139 VAL GLY LEU PHE GLU ASP THR ASN LEU CYS ALA ILE HIS SEQRES 10 E 139 ALA LYS ARG VAL THR ILE MET PRO LYS ASP ILE GLN LEU SEQRES 11 E 139 ALA ARG ARG ILE ARG GLY GLU ARG ALA SEQRES 1 F 106 GLY SER HIS MET SER GLY ARG GLY LYS GLY GLY LYS GLY SEQRES 2 F 106 LEU GLY LYS GLY GLY ALA LYS ARG HIS ARG LYS VAL LEU SEQRES 3 F 106 ARG ASP ASN ILE GLN GLY ILE THR LYS PRO ALA ILE ARG SEQRES 4 F 106 ARG LEU ALA ARG ARG GLY GLY VAL LYS ARG ILE SER GLY SEQRES 5 F 106 LEU ILE TYR GLU GLU THR ARG GLY VAL LEU LYS VAL PHE SEQRES 6 F 106 LEU GLU ASN VAL ILE ARG ASP ALA VAL THR TYR THR GLU SEQRES 7 F 106 HIS ALA LYS ARG LYS THR VAL THR ALA MET ASP VAL VAL SEQRES 8 F 106 TYR ALA LEU LYS ARG GLN GLY ARG THR LEU TYR GLY PHE SEQRES 9 F 106 GLY GLY SEQRES 1 I 156 DA DT DC DA DG DA DA DT DC DC DC DG DG SEQRES 2 I 156 DT DG DC DC DG DA DG DG DC DC DG DC DT SEQRES 3 I 156 DC DA DA DT DT DG DG DT DC DG DT DA DG SEQRES 4 I 156 DA DC DA DG DC DT DC DT DA DG DC DA DC SEQRES 5 I 156 DC DG DC DT DT DA DA DA DC DG DC DA DC SEQRES 6 I 156 DG DT DA DC DG DC DG DC DT DG DT DC DC SEQRES 7 I 156 DC DC DC DG DC DG DT DT DT DT DA DA DC SEQRES 8 I 156 DC DG DC DC DA DA DG DG DG DG DA DT DT SEQRES 9 I 156 DA DC DA DC DC DC DA DA DG DA DC DA DC SEQRES 10 I 156 DC DA DG DG DC DA DC DG DA DG DA DC DA SEQRES 11 I 156 DG DA DA DA DA DA DA DA DC DA DA DC DG SEQRES 12 I 156 DA DA DA DA DC DG DG DC DC DA DC DC DA SEQRES 1 J 153 DT DG DG DC DC DG DT DT DT DT DC DG DT SEQRES 2 J 153 DT DG DT DT DT DT DT DT DT DC DT DG DT SEQRES 3 J 153 DC DT DC DG DT DG DC DC DT DG DG DT DG SEQRES 4 J 153 DT DC DT DT DG DG DG DT DG DT DA DA DT SEQRES 5 J 153 DC DC DC DC DT DT DG DG DC DG DG DT DT SEQRES 6 J 153 DA DA DA DA DC DG DC DG DG DG DG DG DA SEQRES 7 J 153 DC DA DG DC DG DC DG DT DA DC DG DT DG SEQRES 8 J 153 DC DG DT DT DT DA DA DG DC DG DG DT DG SEQRES 9 J 153 DC DT DA DG DA DG DC DT DG DT DC DT DA SEQRES 10 J 153 DC DG DA DC DC DA DA DT DT DG DA DG DC SEQRES 11 J 153 DG DG DC DC DT DC DG DG DC DA DC DC DG SEQRES 12 J 153 DG DG DA DT DT DC DT DG DA DT SEQRES 1 L 342 GLY SER HIS MET ALA MET GLN MET GLN LEU GLU ALA ASN SEQRES 2 L 342 ALA ASP THR SER VAL GLU GLU GLU SER PHE GLY PRO GLN SEQRES 3 L 342 PRO ILE SER ARG LEU GLU GLN CYS GLY ILE ASN ALA ASN SEQRES 4 L 342 ASP VAL LYS LYS LEU GLU GLU ALA GLY PHE HIS THR VAL SEQRES 5 L 342 GLU ALA VAL ALA TYR ALA PRO LYS LYS GLU LEU ILE ASN SEQRES 6 L 342 ILE LYS GLY ILE SER GLU ALA LYS ALA ASP LYS ILE LEU SEQRES 7 L 342 ALA GLU ALA ALA LYS LEU VAL PRO MET GLY PHE THR THR SEQRES 8 L 342 ALA THR GLU PHE HIS GLN ARG ARG SER GLU ILE ILE GLN SEQRES 9 L 342 ILE THR THR GLY SER LYS GLU LEU ASP LYS LEU LEU GLN SEQRES 10 L 342 GLY GLY ILE GLU THR GLY SER ILE THR GLU MET PHE GLY SEQRES 11 L 342 GLU PHE ARG THR GLY LYS THR GLN ILE CYS HIS THR LEU SEQRES 12 L 342 ALA VAL THR CYS GLN LEU PRO ILE ASP ARG GLY GLY GLY SEQRES 13 L 342 GLU GLY LYS ALA MET TYR ILE ASP THR GLU GLY THR PHE SEQRES 14 L 342 ARG PRO GLU ARG LEU LEU ALA VAL ALA GLU ARG TYR GLY SEQRES 15 L 342 LEU SER GLY SER ASP VAL LEU ASP ASN VAL ALA TYR ALA SEQRES 16 L 342 ARG ALA PHE ASN THR ASP HIS GLN THR GLN LEU LEU TYR SEQRES 17 L 342 GLN ALA SER ALA MET MET VAL GLU SER ARG TYR ALA LEU SEQRES 18 L 342 LEU ILE VAL ASP SER ALA THR ALA LEU TYR ARG THR ASP SEQRES 19 L 342 TYR SER GLY ARG GLY GLU LEU SER ALA ARG GLN MET HIS SEQRES 20 L 342 LEU ALA ARG PHE LEU ARG MET LEU LEU ARG LEU ALA ASP SEQRES 21 L 342 GLU PHE GLY VAL ALA VAL VAL ILE THR ASN GLN VAL VAL SEQRES 22 L 342 ALA GLN VAL ASP GLY ALA ALA MET PHE ALA ALA ASP PRO SEQRES 23 L 342 LYS LYS PRO ILE GLY GLY ASN ILE ILE ALA HIS ALA SER SEQRES 24 L 342 THR THR ARG LEU TYR LEU ARG LYS GLY ARG GLY GLU THR SEQRES 25 L 342 ARG ILE CYS LYS ILE TYR ASP SER PRO CYS LEU PRO GLU SEQRES 26 L 342 ALA GLU ALA MET PHE ALA ILE ASN ALA ASP GLY VAL GLY SEQRES 27 L 342 ASP ALA LYS ASP HELIX 1 AA1 GLY E 44 SER E 57 1 14 HELIX 2 AA2 ARG E 63 ASP E 77 1 15 HELIX 3 AA3 GLN E 85 ALA E 114 1 30 HELIX 4 AA4 MET E 120 GLY E 132 1 13 HELIX 5 AA5 ASN F 25 ILE F 29 5 5 HELIX 6 AA6 THR F 30 GLY F 41 1 12 HELIX 7 AA7 LEU F 49 ALA F 76 1 28 HELIX 8 AA8 THR F 82 GLN F 93 1 12 HELIX 9 AA9 ILE L 25 CYS L 31 1 7 HELIX 10 AB1 ASN L 34 GLY L 45 1 12 HELIX 11 AB2 THR L 48 TYR L 54 1 7 HELIX 12 AB3 PRO L 56 ASN L 62 1 7 HELIX 13 AB4 SER L 67 VAL L 82 1 16 SHEET 1 AA1 2 ARG E 83 PHE E 84 0 SHEET 2 AA1 2 THR F 80 VAL F 81 1 O VAL F 81 N ARG E 83 SHEET 1 AA2 2 THR E 118 ILE E 119 0 SHEET 2 AA2 2 ARG F 45 ILE F 46 1 O ARG F 45 N ILE E 119 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000