HEADER ANTIVIRAL PROTEIN/IMMUNE SYSTEM 08-DEC-23 8XC4 TITLE NIPAH VIRUS ATTACHMENT GLYCOPROTEIN HEAD DOMAIN IN COMPLEX WITH A TITLE 2 BROADLY NEUTRALIZING ANTIBODY 1E5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOPROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 1E5-VH; COMPND 7 CHAIN: C, E; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: 1E5-VL; COMPND 11 CHAIN: D, F; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HENIPAVIRUS NIPAHENSE; SOURCE 3 ORGANISM_TAXID: 3052225; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 EXPRESSION_SYSTEM_CELL_LINE: HEK293; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: MACACA MULATTA; SOURCE 9 ORGANISM_TAXID: 9544; SOURCE 10 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM_CELL_LINE: HEK293; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: MACACA MULATTA; SOURCE 15 ORGANISM_TAXID: 9544; SOURCE 16 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 18 EXPRESSION_SYSTEM_CELL_LINE: HEK293 KEYWDS HENIPAVIRUS, GLYCOPROTEIN, HEAD DOMAIN, ANTIBODY, ANTIVIRAL PROTEIN, KEYWDS 2 ANTIVIRAL PROTEIN-IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.F.FAN,C.M.YU,W.CHEN REVDAT 1 24-JAN-24 8XC4 0 JRNL AUTH P.F.FAN,C.M.YU,W.CHEN JRNL TITL NIPAH VIRUS ATTACHMENT GLYCOPROTEIN HEAD DOMAIN IN COMPLEX JRNL TITL 2 WITH A BROADLY NEUTRALIZING ANTIBODY 1E5 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.24 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.18.2_3874: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.24 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 3 NUMBER OF REFLECTIONS : 57369 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.490 REMARK 3 FREE R VALUE TEST SET COUNT : 2001 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.6900 - 7.7900 0.91 4024 148 0.2243 0.2459 REMARK 3 2 7.7800 - 6.1900 0.95 4022 144 0.2387 0.2811 REMARK 3 3 6.1900 - 5.4100 0.97 4038 145 0.2127 0.2077 REMARK 3 4 5.4100 - 4.9200 0.97 4012 146 0.1819 0.2091 REMARK 3 5 4.9200 - 4.5700 0.97 4002 144 0.1761 0.2168 REMARK 3 6 4.5700 - 4.3000 0.97 3976 150 0.1744 0.2154 REMARK 3 7 4.3000 - 4.0800 0.97 3984 136 0.1904 0.2151 REMARK 3 8 4.0800 - 3.9100 0.96 3935 148 0.2126 0.2285 REMARK 3 9 3.9100 - 3.7600 0.96 3923 144 0.2178 0.2733 REMARK 3 10 3.7600 - 3.6300 0.97 3944 143 0.2523 0.2739 REMARK 3 11 3.6300 - 3.5100 0.97 3942 139 0.2588 0.3393 REMARK 3 12 3.5100 - 3.4100 0.97 3950 141 0.2682 0.2874 REMARK 3 13 3.4100 - 3.3200 0.97 3945 138 0.2926 0.3204 REMARK 3 14 3.3200 - 3.2400 0.90 3671 135 0.3188 0.3347 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.430 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.220 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 14106 REMARK 3 ANGLE : 1.109 19214 REMARK 3 CHIRALITY : 0.069 2235 REMARK 3 PLANARITY : 0.007 2422 REMARK 3 DIHEDRAL : 15.545 2081 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 59.5681 27.1205 -24.4456 REMARK 3 T TENSOR REMARK 3 T11: 0.4869 T22: 0.6858 REMARK 3 T33: 0.6876 T12: -0.0099 REMARK 3 T13: -0.0559 T23: 0.0851 REMARK 3 L TENSOR REMARK 3 L11: 0.4991 L22: 0.8147 REMARK 3 L33: 0.8358 L12: -0.1181 REMARK 3 L13: -0.3018 L23: 0.0043 REMARK 3 S TENSOR REMARK 3 S11: -0.0339 S12: 0.2088 S13: 0.0047 REMARK 3 S21: -0.0902 S22: 0.1054 S23: 0.2038 REMARK 3 S31: 0.1393 S32: -0.0975 S33: -0.0460 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8XC4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 12-DEC-23. REMARK 100 THE DEPOSITION ID IS D_1300043029. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-SEP-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL02U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9789 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 S 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58116 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.240 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.18900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.24 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.32 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.18900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 6VY5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 73.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5 M AMMONIUM SULFATE, 0.1 M SODIUM REMARK 280 ACETATE TRIHYDRATE PH4.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 99.05550 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 96.71100 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 96.71100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 49.52775 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 96.71100 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 96.71100 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 148.58325 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 96.71100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 96.71100 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 49.52775 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 96.71100 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 96.71100 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 148.58325 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 99.05550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E, F, G, H, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, D, J, K, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 164 REMARK 465 HIS A 165 REMARK 465 HIS A 166 REMARK 465 HIS A 167 REMARK 465 HIS A 168 REMARK 465 HIS A 169 REMARK 465 GLY A 170 REMARK 465 SER A 171 REMARK 465 GLY A 172 REMARK 465 GLY A 173 REMARK 465 GLY A 174 REMARK 465 HIS B 164 REMARK 465 HIS B 165 REMARK 465 HIS B 166 REMARK 465 HIS B 167 REMARK 465 HIS B 168 REMARK 465 HIS B 169 REMARK 465 GLY B 170 REMARK 465 SER B 171 REMARK 465 GLY B 172 REMARK 465 GLY B 173 REMARK 465 GLY B 174 REMARK 465 LYS C 230 REMARK 465 SER C 231 REMARK 465 CYS C 232 REMARK 465 ASP C 233 REMARK 465 LYS C 234 REMARK 465 THR C 235 REMARK 465 HIS C 236 REMARK 465 HIS C 237 REMARK 465 HIS C 238 REMARK 465 HIS C 239 REMARK 465 HIS C 240 REMARK 465 HIS C 241 REMARK 465 HIS C 242 REMARK 465 GLY D 212 REMARK 465 GLU D 213 REMARK 465 CYS D 214 REMARK 465 LYS E 230 REMARK 465 SER E 231 REMARK 465 CYS E 232 REMARK 465 ASP E 233 REMARK 465 LYS E 234 REMARK 465 THR E 235 REMARK 465 HIS E 236 REMARK 465 HIS E 237 REMARK 465 HIS E 238 REMARK 465 HIS E 239 REMARK 465 HIS E 240 REMARK 465 HIS E 241 REMARK 465 HIS E 242 REMARK 465 GLY F 212 REMARK 465 GLU F 213 REMARK 465 CYS F 214 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 586 O ILE F 30 2.14 REMARK 500 ND2 ASN B 529 O5 NAG K 1 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 544 OE2 GLU B 386 4554 1.62 REMARK 500 OE1 GLU A 544 CD GLU B 386 4554 2.03 REMARK 500 OE1 GLU A 544 OE1 GLU B 386 4554 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A 466 CB - CG - CD2 ANGL. DEV. = -5.4 DEGREES REMARK 500 TYR B 291 CB - CA - C ANGL. DEV. = 12.3 DEGREES REMARK 500 TYR B 291 CA - CB - CG ANGL. DEV. = 14.3 DEGREES REMARK 500 CYS B 395 CA - CB - SG ANGL. DEV. = 10.5 DEGREES REMARK 500 ARG B 396 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 LEU C 175 CB - CG - CD2 ANGL. DEV. = 10.9 DEGREES REMARK 500 CYS D 23 CA - CB - SG ANGL. DEV. = 9.5 DEGREES REMARK 500 LYS F 39 C - N - CA ANGL. DEV. = 18.3 DEGREES REMARK 500 PHE F 209 CB - CG - CD2 ANGL. DEV. = -7.7 DEGREES REMARK 500 PHE F 209 CB - CG - CD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 306 67.97 -112.38 REMARK 500 LYS A 322 79.41 -119.34 REMARK 500 SER A 329 -8.14 68.38 REMARK 500 TYR A 351 73.27 -157.47 REMARK 500 CYS A 493 58.35 -170.19 REMARK 500 ALA A 532 69.01 -107.10 REMARK 500 ASN A 534 72.30 68.91 REMARK 500 GLN B 212 -126.89 60.94 REMARK 500 THR B 218 -166.63 -129.80 REMARK 500 ASP B 260 31.45 -96.61 REMARK 500 SER B 329 -1.20 62.97 REMARK 500 TYR B 351 74.70 -157.92 REMARK 500 GLU B 422 -50.16 75.43 REMARK 500 SER B 424 36.47 -88.62 REMARK 500 SER B 459 -159.79 -148.73 REMARK 500 GLN B 492 -20.10 77.24 REMARK 500 ASN B 509 81.90 -150.21 REMARK 500 GLN B 530 -58.22 -126.91 REMARK 500 TYR B 547 148.80 -171.78 REMARK 500 CYS B 601 37.91 -98.15 REMARK 500 PRO C 110 48.31 -83.84 REMARK 500 PRO C 163 -170.17 -69.24 REMARK 500 SER C 172 55.07 38.09 REMARK 500 LEU D 11 144.93 -173.97 REMARK 500 ASP D 31 13.27 -140.30 REMARK 500 TYR D 32 57.52 -90.78 REMARK 500 ALA D 51 -47.68 72.41 REMARK 500 ALA D 84 -166.42 -166.09 REMARK 500 TYR D 92 -69.53 -98.64 REMARK 500 ASP D 151 -116.14 53.30 REMARK 500 LYS D 190 -60.49 72.50 REMARK 500 LEU D 201 -5.90 76.13 REMARK 500 LEU E 191 -179.84 -65.19 REMARK 500 GLN F 27 -169.40 -109.48 REMARK 500 TYR F 32 57.93 -101.41 REMARK 500 ALA F 51 -45.62 71.38 REMARK 500 TYR F 92 -75.40 -102.14 REMARK 500 ASP F 151 -117.44 58.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 516 0.17 SIDE CHAIN REMARK 500 TYR B 291 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 8XC4 A 176 602 UNP Q4VCP5 Q4VCP5_NIPAV 176 602 DBREF 8XC4 B 176 602 UNP Q4VCP5 Q4VCP5_NIPAV 176 602 DBREF 8XC4 C 1 242 PDB 8XC4 8XC4 1 242 DBREF 8XC4 D 1 214 PDB 8XC4 8XC4 1 214 DBREF 8XC4 E 1 242 PDB 8XC4 8XC4 1 242 DBREF 8XC4 F 1 214 PDB 8XC4 8XC4 1 214 SEQADV 8XC4 HIS A 164 UNP Q4VCP5 EXPRESSION TAG SEQADV 8XC4 HIS A 165 UNP Q4VCP5 EXPRESSION TAG SEQADV 8XC4 HIS A 166 UNP Q4VCP5 EXPRESSION TAG SEQADV 8XC4 HIS A 167 UNP Q4VCP5 EXPRESSION TAG SEQADV 8XC4 HIS A 168 UNP Q4VCP5 EXPRESSION TAG SEQADV 8XC4 HIS A 169 UNP Q4VCP5 EXPRESSION TAG SEQADV 8XC4 GLY A 170 UNP Q4VCP5 EXPRESSION TAG SEQADV 8XC4 SER A 171 UNP Q4VCP5 EXPRESSION TAG SEQADV 8XC4 GLY A 172 UNP Q4VCP5 EXPRESSION TAG SEQADV 8XC4 GLY A 173 UNP Q4VCP5 EXPRESSION TAG SEQADV 8XC4 GLY A 174 UNP Q4VCP5 EXPRESSION TAG SEQADV 8XC4 SER A 175 UNP Q4VCP5 EXPRESSION TAG SEQADV 8XC4 HIS B 164 UNP Q4VCP5 EXPRESSION TAG SEQADV 8XC4 HIS B 165 UNP Q4VCP5 EXPRESSION TAG SEQADV 8XC4 HIS B 166 UNP Q4VCP5 EXPRESSION TAG SEQADV 8XC4 HIS B 167 UNP Q4VCP5 EXPRESSION TAG SEQADV 8XC4 HIS B 168 UNP Q4VCP5 EXPRESSION TAG SEQADV 8XC4 HIS B 169 UNP Q4VCP5 EXPRESSION TAG SEQADV 8XC4 GLY B 170 UNP Q4VCP5 EXPRESSION TAG SEQADV 8XC4 SER B 171 UNP Q4VCP5 EXPRESSION TAG SEQADV 8XC4 GLY B 172 UNP Q4VCP5 EXPRESSION TAG SEQADV 8XC4 GLY B 173 UNP Q4VCP5 EXPRESSION TAG SEQADV 8XC4 GLY B 174 UNP Q4VCP5 EXPRESSION TAG SEQADV 8XC4 SER B 175 UNP Q4VCP5 EXPRESSION TAG SEQRES 1 A 439 HIS HIS HIS HIS HIS HIS GLY SER GLY GLY GLY SER GLU SEQRES 2 A 439 GLY VAL SER ASN LEU VAL GLY LEU PRO ASN ASN ILE CYS SEQRES 3 A 439 LEU GLN LYS THR SER ASN GLN ILE LEU LYS PRO LYS LEU SEQRES 4 A 439 ILE SER TYR THR LEU PRO VAL VAL GLY GLN SER GLY THR SEQRES 5 A 439 CYS ILE THR ASP PRO LEU LEU ALA MET ASP GLU GLY TYR SEQRES 6 A 439 PHE ALA TYR SER HIS LEU GLU LYS ILE GLY SER CYS SER SEQRES 7 A 439 ARG GLY VAL SER LYS GLN ARG ILE ILE GLY VAL GLY GLU SEQRES 8 A 439 VAL LEU ASP ARG GLY ASP GLU VAL PRO SER LEU PHE MET SEQRES 9 A 439 THR ASN VAL TRP THR PRO SER ASN PRO ASN THR VAL TYR SEQRES 10 A 439 HIS CYS SER ALA VAL TYR ASN ASN GLU PHE TYR TYR VAL SEQRES 11 A 439 LEU CYS ALA VAL SER VAL VAL GLY ASP PRO ILE LEU ASN SEQRES 12 A 439 SER THR TYR TRP SER GLY SER LEU MET MET THR ARG LEU SEQRES 13 A 439 ALA VAL LYS PRO LYS ASN ASN GLY GLU SER TYR ASN GLN SEQRES 14 A 439 HIS GLN PHE ALA LEU ARG ASN ILE GLU LYS GLY LYS TYR SEQRES 15 A 439 ASP LYS VAL MET PRO TYR GLY PRO SER GLY ILE LYS GLN SEQRES 16 A 439 GLY ASP THR LEU TYR PHE PRO ALA VAL GLY PHE LEU VAL SEQRES 17 A 439 ARG THR GLU PHE LYS TYR ASN ASP SER ASN CYS PRO ILE SEQRES 18 A 439 ALA GLU CYS GLN TYR SER LYS PRO GLU ASN CYS ARG LEU SEQRES 19 A 439 SER MET GLY ILE ARG PRO ASN SER HIS TYR ILE LEU ARG SEQRES 20 A 439 SER GLY LEU LEU LYS TYR ASN LEU SER ASP GLU GLU ASN SEQRES 21 A 439 SER LYS ILE VAL PHE ILE GLU ILE SER ASP GLN ARG LEU SEQRES 22 A 439 SER ILE GLY SER PRO SER LYS ILE TYR ASP SER LEU GLY SEQRES 23 A 439 GLN PRO VAL PHE TYR GLN ALA SER PHE SER TRP ASP THR SEQRES 24 A 439 MET ILE LYS PHE GLY ASP VAL GLN THR VAL ASN PRO LEU SEQRES 25 A 439 VAL VAL ASN TRP ARG ASP ASN THR VAL ILE SER ARG PRO SEQRES 26 A 439 GLY GLN SER GLN CYS PRO ARG PHE ASN LYS CYS PRO GLU SEQRES 27 A 439 VAL CYS TRP GLU GLY VAL TYR ASN ASP ALA PHE LEU ILE SEQRES 28 A 439 ASP ARG ILE ASN TRP ILE SER ALA GLY VAL PHE LEU ASP SEQRES 29 A 439 SER ASN GLN THR ALA GLU ASN PRO VAL PHE THR VAL PHE SEQRES 30 A 439 LYS ASP ASN GLU VAL LEU TYR ARG ALA GLN LEU ALA SER SEQRES 31 A 439 GLU ASP THR ASN ALA GLN LYS THR ILE THR ASN CYS PHE SEQRES 32 A 439 LEU LEU LYS ASN LYS ILE TRP CYS ILE SER LEU VAL GLU SEQRES 33 A 439 ILE TYR ASP THR GLY ASP ASN VAL ILE ARG PRO LYS LEU SEQRES 34 A 439 PHE ALA VAL LYS ILE PRO GLU GLN CYS THR SEQRES 1 B 439 HIS HIS HIS HIS HIS HIS GLY SER GLY GLY GLY SER GLU SEQRES 2 B 439 GLY VAL SER ASN LEU VAL GLY LEU PRO ASN ASN ILE CYS SEQRES 3 B 439 LEU GLN LYS THR SER ASN GLN ILE LEU LYS PRO LYS LEU SEQRES 4 B 439 ILE SER TYR THR LEU PRO VAL VAL GLY GLN SER GLY THR SEQRES 5 B 439 CYS ILE THR ASP PRO LEU LEU ALA MET ASP GLU GLY TYR SEQRES 6 B 439 PHE ALA TYR SER HIS LEU GLU LYS ILE GLY SER CYS SER SEQRES 7 B 439 ARG GLY VAL SER LYS GLN ARG ILE ILE GLY VAL GLY GLU SEQRES 8 B 439 VAL LEU ASP ARG GLY ASP GLU VAL PRO SER LEU PHE MET SEQRES 9 B 439 THR ASN VAL TRP THR PRO SER ASN PRO ASN THR VAL TYR SEQRES 10 B 439 HIS CYS SER ALA VAL TYR ASN ASN GLU PHE TYR TYR VAL SEQRES 11 B 439 LEU CYS ALA VAL SER VAL VAL GLY ASP PRO ILE LEU ASN SEQRES 12 B 439 SER THR TYR TRP SER GLY SER LEU MET MET THR ARG LEU SEQRES 13 B 439 ALA VAL LYS PRO LYS ASN ASN GLY GLU SER TYR ASN GLN SEQRES 14 B 439 HIS GLN PHE ALA LEU ARG ASN ILE GLU LYS GLY LYS TYR SEQRES 15 B 439 ASP LYS VAL MET PRO TYR GLY PRO SER GLY ILE LYS GLN SEQRES 16 B 439 GLY ASP THR LEU TYR PHE PRO ALA VAL GLY PHE LEU VAL SEQRES 17 B 439 ARG THR GLU PHE LYS TYR ASN ASP SER ASN CYS PRO ILE SEQRES 18 B 439 ALA GLU CYS GLN TYR SER LYS PRO GLU ASN CYS ARG LEU SEQRES 19 B 439 SER MET GLY ILE ARG PRO ASN SER HIS TYR ILE LEU ARG SEQRES 20 B 439 SER GLY LEU LEU LYS TYR ASN LEU SER ASP GLU GLU ASN SEQRES 21 B 439 SER LYS ILE VAL PHE ILE GLU ILE SER ASP GLN ARG LEU SEQRES 22 B 439 SER ILE GLY SER PRO SER LYS ILE TYR ASP SER LEU GLY SEQRES 23 B 439 GLN PRO VAL PHE TYR GLN ALA SER PHE SER TRP ASP THR SEQRES 24 B 439 MET ILE LYS PHE GLY ASP VAL GLN THR VAL ASN PRO LEU SEQRES 25 B 439 VAL VAL ASN TRP ARG ASP ASN THR VAL ILE SER ARG PRO SEQRES 26 B 439 GLY GLN SER GLN CYS PRO ARG PHE ASN LYS CYS PRO GLU SEQRES 27 B 439 VAL CYS TRP GLU GLY VAL TYR ASN ASP ALA PHE LEU ILE SEQRES 28 B 439 ASP ARG ILE ASN TRP ILE SER ALA GLY VAL PHE LEU ASP SEQRES 29 B 439 SER ASN GLN THR ALA GLU ASN PRO VAL PHE THR VAL PHE SEQRES 30 B 439 LYS ASP ASN GLU VAL LEU TYR ARG ALA GLN LEU ALA SER SEQRES 31 B 439 GLU ASP THR ASN ALA GLN LYS THR ILE THR ASN CYS PHE SEQRES 32 B 439 LEU LEU LYS ASN LYS ILE TRP CYS ILE SER LEU VAL GLU SEQRES 33 B 439 ILE TYR ASP THR GLY ASP ASN VAL ILE ARG PRO LYS LEU SEQRES 34 B 439 PHE ALA VAL LYS ILE PRO GLU GLN CYS THR SEQRES 1 C 242 GLN VAL GLN LEU GLN GLU SER GLY PRO GLY VAL VAL LYS SEQRES 2 C 242 PRO SER GLU THR LEU SER LEU THR CYS ALA VAL SER GLY SEQRES 3 C 242 GLY SER ILE SER ASP THR TYR ARG TRP SER TRP ILE ARG SEQRES 4 C 242 GLN PRO PRO GLY LYS GLY LEU GLU TRP ILE GLY TYR ILE SEQRES 5 C 242 TYR GLY SER ALA THR SER THR TYR TYR ASN PRO SER LEU SEQRES 6 C 242 SER SER ARG VAL THR ILE SER LYS ASP MET SER LYS ASN SEQRES 7 C 242 GLN PHE SER LEU ASN LEU ASN SER VAL THR ALA ALA ASP SEQRES 8 C 242 THR ALA VAL TYR TYR CYS ALA ARG ASP TYR GLN TYR TYR SEQRES 9 C 242 TYR SER GLY SER TYR PRO THR PRO HIS ASN TRP PHE ASP SEQRES 10 C 242 VAL TRP GLY PRO GLY VAL LEU VAL THR VAL SER SER ALA SEQRES 11 C 242 SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SER SEQRES 12 C 242 SER LYS SER THR SER GLY GLY THR ALA ALA LEU GLY CYS SEQRES 13 C 242 LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SER SEQRES 14 C 242 TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS THR PHE SEQRES 15 C 242 PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER LEU SER SEQRES 16 C 242 SER VAL VAL THR VAL PRO SER SER GLY LEU GLY THR GLN SEQRES 17 C 242 THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER ASN THR SEQRES 18 C 242 LYS VAL ASP LYS LYS VAL GLU PRO LYS SER CYS ASP LYS SEQRES 19 C 242 THR HIS HIS HIS HIS HIS HIS HIS SEQRES 1 D 214 ASP ILE GLN MET THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 D 214 SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SER SEQRES 3 D 214 GLN GLY ILE ILE ASP TYR LEU SER TRP TYR GLN GLN LYS SEQRES 4 D 214 PRO GLY LYS ALA PRO LYS LEU LEU ILE SER THR ALA SER SEQRES 5 D 214 ASN LEU GLU SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 D 214 GLY SER GLY THR GLU PHE THR LEU THR ILE SER SER LEU SEQRES 7 D 214 GLN PRO GLU ASP PHE ALA THR TYR SER CYS LEU GLN GLY SEQRES 8 D 214 TYR THR THR PRO TYR THR PHE GLY GLN GLY THR LYS VAL SEQRES 9 D 214 GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 D 214 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 D 214 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 D 214 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 D 214 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 D 214 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 D 214 LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU SEQRES 16 D 214 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 D 214 PHE ASN ARG GLY GLU CYS SEQRES 1 E 242 GLN VAL GLN LEU GLN GLU SER GLY PRO GLY VAL VAL LYS SEQRES 2 E 242 PRO SER GLU THR LEU SER LEU THR CYS ALA VAL SER GLY SEQRES 3 E 242 GLY SER ILE SER ASP THR TYR ARG TRP SER TRP ILE ARG SEQRES 4 E 242 GLN PRO PRO GLY LYS GLY LEU GLU TRP ILE GLY TYR ILE SEQRES 5 E 242 TYR GLY SER ALA THR SER THR TYR TYR ASN PRO SER LEU SEQRES 6 E 242 SER SER ARG VAL THR ILE SER LYS ASP MET SER LYS ASN SEQRES 7 E 242 GLN PHE SER LEU ASN LEU ASN SER VAL THR ALA ALA ASP SEQRES 8 E 242 THR ALA VAL TYR TYR CYS ALA ARG ASP TYR GLN TYR TYR SEQRES 9 E 242 TYR SER GLY SER TYR PRO THR PRO HIS ASN TRP PHE ASP SEQRES 10 E 242 VAL TRP GLY PRO GLY VAL LEU VAL THR VAL SER SER ALA SEQRES 11 E 242 SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SER SEQRES 12 E 242 SER LYS SER THR SER GLY GLY THR ALA ALA LEU GLY CYS SEQRES 13 E 242 LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SER SEQRES 14 E 242 TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS THR PHE SEQRES 15 E 242 PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER LEU SER SEQRES 16 E 242 SER VAL VAL THR VAL PRO SER SER GLY LEU GLY THR GLN SEQRES 17 E 242 THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER ASN THR SEQRES 18 E 242 LYS VAL ASP LYS LYS VAL GLU PRO LYS SER CYS ASP LYS SEQRES 19 E 242 THR HIS HIS HIS HIS HIS HIS HIS SEQRES 1 F 214 ASP ILE GLN MET THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 F 214 SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SER SEQRES 3 F 214 GLN GLY ILE ILE ASP TYR LEU SER TRP TYR GLN GLN LYS SEQRES 4 F 214 PRO GLY LYS ALA PRO LYS LEU LEU ILE SER THR ALA SER SEQRES 5 F 214 ASN LEU GLU SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 F 214 GLY SER GLY THR GLU PHE THR LEU THR ILE SER SER LEU SEQRES 7 F 214 GLN PRO GLU ASP PHE ALA THR TYR SER CYS LEU GLN GLY SEQRES 8 F 214 TYR THR THR PRO TYR THR PHE GLY GLN GLY THR LYS VAL SEQRES 9 F 214 GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 F 214 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 F 214 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 F 214 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 F 214 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 F 214 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 F 214 LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU SEQRES 16 F 214 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 F 214 PHE ASN ARG GLY GLU CYS HET NAG G 1 14 HET NAG G 2 14 HET BMA G 3 11 HET FUC G 4 10 HET NAG H 1 14 HET NAG H 2 14 HET BMA H 3 11 HET MAN H 4 11 HET FUC H 5 10 HET NAG I 1 14 HET NAG I 2 14 HET BMA I 3 11 HET NAG J 1 14 HET NAG J 2 14 HET BMA J 3 11 HET FUC J 4 10 HET FUC J 5 10 HET NAG K 1 14 HET NAG K 2 14 HET BMA K 3 11 HET MAN K 4 11 HET FUC K 5 10 HET NAG L 1 14 HET NAG L 2 14 HET BMA L 3 11 HET NAG A 701 14 HET NAG B 701 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 7 NAG 14(C8 H15 N O6) FORMUL 7 BMA 6(C6 H12 O6) FORMUL 7 FUC 5(C6 H12 O5) FORMUL 8 MAN 2(C6 H12 O6) HELIX 1 AA1 LEU A 207 GLY A 211 5 5 HELIX 2 AA2 ASN A 275 ASN A 277 5 3 HELIX 3 AA3 ASN A 306 TRP A 310 5 5 HELIX 4 AA4 THR A 373 PHE A 375 5 3 HELIX 5 AA5 ASN A 378 CYS A 382 5 5 HELIX 6 AA6 GLU A 393 SER A 398 1 6 HELIX 7 AA7 THR B 373 PHE B 375 5 3 HELIX 8 AA8 ASN B 378 CYS B 382 5 5 HELIX 9 AA9 GLU B 393 MET B 399 1 7 HELIX 10 AB1 SER C 28 THR C 32 5 5 HELIX 11 AB2 MET C 75 LYS C 77 5 3 HELIX 12 AB3 THR C 88 THR C 92 5 5 HELIX 13 AB4 SER C 203 LEU C 205 5 3 HELIX 14 AB5 GLN D 79 PHE D 83 5 5 HELIX 15 AB6 SER D 121 SER D 127 1 7 HELIX 16 AB7 LYS D 183 LYS D 190 1 8 HELIX 17 AB8 SER E 28 THR E 32 5 5 HELIX 18 AB9 MET E 75 LYS E 77 5 3 HELIX 19 AC1 THR E 88 THR E 92 5 5 HELIX 20 AC2 SER E 203 LEU E 205 5 3 HELIX 21 AC3 SER F 121 GLY F 128 1 8 HELIX 22 AC4 LYS F 183 LYS F 190 1 8 SHEET 1 AA1 5 VAL A 178 SER A 179 0 SHEET 2 AA1 5 ALA A 558 LEU A 568 -1 O LEU A 567 N SER A 179 SHEET 3 AA1 5 LYS A 571 TYR A 581 -1 O ILE A 575 N ASN A 564 SHEET 4 AA1 5 ILE A 588 LYS A 596 -1 O PHE A 593 N SER A 576 SHEET 5 AA1 5 LYS A 201 LEU A 202 -1 N LYS A 201 O ALA A 594 SHEET 1 AA2 4 CYS A 216 ASP A 225 0 SHEET 2 AA2 4 TYR A 228 ILE A 237 -1 O LEU A 234 N THR A 218 SHEET 3 AA2 4 VAL A 244 ASP A 257 -1 O LYS A 246 N GLU A 235 SHEET 4 AA2 4 PRO A 263 TRP A 271 -1 O THR A 268 N VAL A 252 SHEET 1 AA3 4 VAL A 279 ASN A 287 0 SHEET 2 AA3 4 PHE A 290 VAL A 297 -1 O PHE A 290 N ASN A 287 SHEET 3 AA3 4 LEU A 314 ALA A 320 -1 O MET A 315 N CYS A 295 SHEET 4 AA3 4 GLN A 332 ALA A 336 -1 O PHE A 335 N MET A 316 SHEET 1 AA4 5 ASN A 339 GLU A 341 0 SHEET 2 AA4 5 LYS A 425 GLU A 430 1 O ILE A 426 N GLU A 341 SHEET 3 AA4 5 TYR A 407 ASN A 417 -1 N LYS A 415 O VAL A 427 SHEET 4 AA4 5 THR A 361 VAL A 371 -1 N LEU A 362 O TYR A 416 SHEET 5 AA4 5 LYS A 347 PRO A 350 -1 N LYS A 347 O PHE A 369 SHEET 1 AA5 5 ASN A 339 GLU A 341 0 SHEET 2 AA5 5 LYS A 425 GLU A 430 1 O ILE A 426 N GLU A 341 SHEET 3 AA5 5 TYR A 407 ASN A 417 -1 N LYS A 415 O VAL A 427 SHEET 4 AA5 5 THR A 361 VAL A 371 -1 N LEU A 362 O TYR A 416 SHEET 5 AA5 5 ILE A 356 GLN A 358 -1 N ILE A 356 O TYR A 363 SHEET 1 AA6 4 SER A 442 SER A 447 0 SHEET 2 AA6 4 GLN A 450 GLN A 455 -1 O GLN A 450 N SER A 447 SHEET 3 AA6 4 LYS A 465 THR A 471 -1 O GLY A 467 N PHE A 453 SHEET 4 AA6 4 VAL A 476 TRP A 479 -1 O ASN A 478 N ASP A 468 SHEET 1 AA7 4 PHE A 512 ASP A 515 0 SHEET 2 AA7 4 ILE A 520 LEU A 526 -1 O ILE A 520 N ILE A 514 SHEET 3 AA7 4 PRO A 535 PHE A 540 -1 O THR A 538 N GLY A 523 SHEET 4 AA7 4 VAL A 545 GLN A 550 -1 O TYR A 547 N VAL A 539 SHEET 1 AA8 5 SER B 179 ASN B 180 0 SHEET 2 AA8 5 ALA B 558 LEU B 568 -1 O LEU B 567 N SER B 179 SHEET 3 AA8 5 LYS B 571 TYR B 581 -1 O ILE B 575 N ASN B 564 SHEET 4 AA8 5 ILE B 588 LYS B 596 -1 O VAL B 595 N CYS B 574 SHEET 5 AA8 5 LYS B 201 LEU B 202 -1 N LYS B 201 O ALA B 594 SHEET 1 AA9 4 CYS B 216 ASP B 225 0 SHEET 2 AA9 4 TYR B 228 ILE B 237 -1 O LYS B 236 N CYS B 216 SHEET 3 AA9 4 VAL B 244 ASP B 257 -1 O LYS B 246 N GLU B 235 SHEET 4 AA9 4 PRO B 263 TRP B 271 -1 O THR B 268 N VAL B 252 SHEET 1 AB1 4 VAL B 279 ASN B 287 0 SHEET 2 AB1 4 PHE B 290 VAL B 297 -1 O TYR B 292 N VAL B 285 SHEET 3 AB1 4 LEU B 314 ALA B 320 -1 O THR B 317 N VAL B 293 SHEET 4 AB1 4 GLN B 332 PHE B 335 -1 O PHE B 335 N MET B 316 SHEET 1 AB2 5 ILE B 340 GLU B 341 0 SHEET 2 AB2 5 ILE B 426 GLU B 430 1 O PHE B 428 N GLU B 341 SHEET 3 AB2 5 TYR B 407 ASN B 417 -1 N LYS B 415 O VAL B 427 SHEET 4 AB2 5 THR B 361 VAL B 371 -1 N LEU B 362 O TYR B 416 SHEET 5 AB2 5 LYS B 347 PRO B 350 -1 N LYS B 347 O PHE B 369 SHEET 1 AB3 5 ILE B 340 GLU B 341 0 SHEET 2 AB3 5 ILE B 426 GLU B 430 1 O PHE B 428 N GLU B 341 SHEET 3 AB3 5 TYR B 407 ASN B 417 -1 N LYS B 415 O VAL B 427 SHEET 4 AB3 5 THR B 361 VAL B 371 -1 N LEU B 362 O TYR B 416 SHEET 5 AB3 5 ILE B 356 GLN B 358 -1 N GLN B 358 O THR B 361 SHEET 1 AB4 4 SER B 442 SER B 447 0 SHEET 2 AB4 4 GLN B 450 GLN B 455 -1 O TYR B 454 N LYS B 443 SHEET 3 AB4 4 LYS B 465 THR B 471 -1 O VAL B 469 N PRO B 451 SHEET 4 AB4 4 VAL B 476 TRP B 479 -1 O ASN B 478 N ASP B 468 SHEET 1 AB5 4 PHE B 512 ASP B 515 0 SHEET 2 AB5 4 ILE B 520 LEU B 526 -1 O ALA B 522 N PHE B 512 SHEET 3 AB5 4 PRO B 535 PHE B 540 -1 O THR B 538 N GLY B 523 SHEET 4 AB5 4 VAL B 545 GLN B 550 -1 O TYR B 547 N VAL B 539 SHEET 1 AB6 4 GLN C 3 SER C 7 0 SHEET 2 AB6 4 LEU C 18 SER C 25 -1 O SER C 25 N GLN C 3 SHEET 3 AB6 4 GLN C 79 LEU C 84 -1 O LEU C 84 N LEU C 18 SHEET 4 AB6 4 VAL C 69 ASP C 74 -1 N ASP C 74 O GLN C 79 SHEET 1 AB7 6 VAL C 11 VAL C 12 0 SHEET 2 AB7 6 VAL C 123 VAL C 127 1 O THR C 126 N VAL C 12 SHEET 3 AB7 6 ALA C 93 TYR C 103 -1 N TYR C 95 O VAL C 123 SHEET 4 AB7 6 ARG C 34 GLN C 40 -1 N ILE C 38 O TYR C 96 SHEET 5 AB7 6 GLU C 47 TYR C 53 -1 O GLU C 47 N ARG C 39 SHEET 6 AB7 6 THR C 59 TYR C 61 -1 O TYR C 60 N TYR C 51 SHEET 1 AB8 4 VAL C 11 VAL C 12 0 SHEET 2 AB8 4 VAL C 123 VAL C 127 1 O THR C 126 N VAL C 12 SHEET 3 AB8 4 ALA C 93 TYR C 103 -1 N TYR C 95 O VAL C 123 SHEET 4 AB8 4 HIS C 113 TRP C 119 -1 O TRP C 115 N TYR C 101 SHEET 1 AB9 4 SER C 136 LEU C 140 0 SHEET 2 AB9 4 THR C 151 TYR C 161 -1 O GLY C 155 N LEU C 140 SHEET 3 AB9 4 TYR C 192 PRO C 201 -1 O LEU C 194 N VAL C 158 SHEET 4 AB9 4 VAL C 179 THR C 181 -1 N HIS C 180 O VAL C 197 SHEET 1 AC1 4 SER C 136 LEU C 140 0 SHEET 2 AC1 4 THR C 151 TYR C 161 -1 O GLY C 155 N LEU C 140 SHEET 3 AC1 4 TYR C 192 PRO C 201 -1 O LEU C 194 N VAL C 158 SHEET 4 AC1 4 VAL C 185 LEU C 186 -1 N VAL C 185 O SER C 193 SHEET 1 AC2 3 VAL C 166 VAL C 168 0 SHEET 2 AC2 3 VAL C 214 HIS C 216 -1 O ASN C 215 N THR C 167 SHEET 3 AC2 3 THR C 221 VAL C 223 -1 O THR C 221 N HIS C 216 SHEET 1 AC3 4 MET D 4 SER D 7 0 SHEET 2 AC3 4 VAL D 19 ALA D 25 -1 O THR D 22 N SER D 7 SHEET 3 AC3 4 GLU D 70 ILE D 75 -1 O LEU D 73 N ILE D 21 SHEET 4 AC3 4 PHE D 62 GLY D 66 -1 N SER D 63 O THR D 74 SHEET 1 AC4 6 SER D 10 SER D 14 0 SHEET 2 AC4 6 THR D 102 LYS D 107 1 O LYS D 107 N ALA D 13 SHEET 3 AC4 6 ALA D 84 GLN D 90 -1 N TYR D 86 O THR D 102 SHEET 4 AC4 6 LEU D 33 GLN D 38 -1 N TYR D 36 O SER D 87 SHEET 5 AC4 6 LYS D 45 SER D 49 -1 O LYS D 45 N GLN D 37 SHEET 6 AC4 6 ASN D 53 LEU D 54 -1 O ASN D 53 N SER D 49 SHEET 1 AC5 4 SER D 10 SER D 14 0 SHEET 2 AC5 4 THR D 102 LYS D 107 1 O LYS D 107 N ALA D 13 SHEET 3 AC5 4 ALA D 84 GLN D 90 -1 N TYR D 86 O THR D 102 SHEET 4 AC5 4 THR D 97 PHE D 98 -1 O THR D 97 N GLN D 90 SHEET 1 AC6 4 VAL D 115 PHE D 118 0 SHEET 2 AC6 4 THR D 129 PHE D 139 -1 O LEU D 135 N PHE D 116 SHEET 3 AC6 4 TYR D 173 SER D 182 -1 O LEU D 181 N ALA D 130 SHEET 4 AC6 4 SER D 159 VAL D 163 -1 N SER D 162 O SER D 176 SHEET 1 AC7 4 ALA D 153 LEU D 154 0 SHEET 2 AC7 4 LYS D 145 VAL D 150 -1 N VAL D 150 O ALA D 153 SHEET 3 AC7 4 VAL D 191 THR D 197 -1 O ALA D 193 N LYS D 149 SHEET 4 AC7 4 VAL D 205 PHE D 209 -1 O SER D 208 N TYR D 192 SHEET 1 AC8 4 GLN E 3 SER E 7 0 SHEET 2 AC8 4 LEU E 18 SER E 25 -1 O SER E 25 N GLN E 3 SHEET 3 AC8 4 GLN E 79 LEU E 84 -1 O PHE E 80 N CYS E 22 SHEET 4 AC8 4 VAL E 69 ASP E 74 -1 N ASP E 74 O GLN E 79 SHEET 1 AC9 6 VAL E 11 VAL E 12 0 SHEET 2 AC9 6 VAL E 123 VAL E 127 1 O THR E 126 N VAL E 12 SHEET 3 AC9 6 ALA E 93 TYR E 103 -1 N TYR E 95 O VAL E 123 SHEET 4 AC9 6 ARG E 34 GLN E 40 -1 N ILE E 38 O TYR E 96 SHEET 5 AC9 6 GLU E 47 TYR E 53 -1 O GLU E 47 N ARG E 39 SHEET 6 AC9 6 THR E 59 TYR E 61 -1 O TYR E 60 N TYR E 51 SHEET 1 AD1 4 VAL E 11 VAL E 12 0 SHEET 2 AD1 4 VAL E 123 VAL E 127 1 O THR E 126 N VAL E 12 SHEET 3 AD1 4 ALA E 93 TYR E 103 -1 N TYR E 95 O VAL E 123 SHEET 4 AD1 4 HIS E 113 TRP E 119 -1 O TRP E 115 N TYR E 101 SHEET 1 AD2 4 SER E 136 LEU E 140 0 SHEET 2 AD2 4 THR E 151 LYS E 159 -1 O LEU E 157 N PHE E 138 SHEET 3 AD2 4 TYR E 192 PRO E 201 -1 O VAL E 200 N ALA E 152 SHEET 4 AD2 4 VAL E 179 THR E 181 -1 N HIS E 180 O VAL E 197 SHEET 1 AD3 4 SER E 136 LEU E 140 0 SHEET 2 AD3 4 THR E 151 LYS E 159 -1 O LEU E 157 N PHE E 138 SHEET 3 AD3 4 TYR E 192 PRO E 201 -1 O VAL E 200 N ALA E 152 SHEET 4 AD3 4 VAL E 185 LEU E 186 -1 N VAL E 185 O SER E 193 SHEET 1 AD4 2 ASN E 215 HIS E 216 0 SHEET 2 AD4 2 THR E 221 LYS E 222 -1 O THR E 221 N HIS E 216 SHEET 1 AD5 4 MET F 4 SER F 7 0 SHEET 2 AD5 4 VAL F 19 ALA F 25 -1 O THR F 22 N SER F 7 SHEET 3 AD5 4 GLU F 70 ILE F 75 -1 O LEU F 73 N ILE F 21 SHEET 4 AD5 4 PHE F 62 GLY F 66 -1 N SER F 63 O THR F 74 SHEET 1 AD6 6 SER F 10 SER F 14 0 SHEET 2 AD6 6 THR F 102 LYS F 107 1 O GLU F 105 N LEU F 11 SHEET 3 AD6 6 THR F 85 GLN F 90 -1 N TYR F 86 O THR F 102 SHEET 4 AD6 6 LEU F 33 GLN F 38 -1 N GLN F 38 O THR F 85 SHEET 5 AD6 6 LYS F 45 SER F 49 -1 O LYS F 45 N GLN F 37 SHEET 6 AD6 6 ASN F 53 LEU F 54 -1 O ASN F 53 N SER F 49 SHEET 1 AD7 4 SER F 10 SER F 14 0 SHEET 2 AD7 4 THR F 102 LYS F 107 1 O GLU F 105 N LEU F 11 SHEET 3 AD7 4 THR F 85 GLN F 90 -1 N TYR F 86 O THR F 102 SHEET 4 AD7 4 THR F 97 PHE F 98 -1 O THR F 97 N GLN F 90 SHEET 1 AD8 4 PHE F 116 PHE F 118 0 SHEET 2 AD8 4 THR F 129 PHE F 139 -1 O VAL F 133 N PHE F 118 SHEET 3 AD8 4 TYR F 173 SER F 182 -1 O LEU F 179 N VAL F 132 SHEET 4 AD8 4 SER F 159 VAL F 163 -1 N SER F 162 O SER F 176 SHEET 1 AD9 4 ALA F 153 LEU F 154 0 SHEET 2 AD9 4 LYS F 145 VAL F 150 -1 N VAL F 150 O ALA F 153 SHEET 3 AD9 4 CYS F 194 THR F 197 -1 O GLU F 195 N GLN F 147 SHEET 4 AD9 4 VAL F 205 THR F 206 -1 O THR F 206 N CYS F 194 SSBOND 1 CYS A 189 CYS A 601 1555 1555 2.04 SSBOND 2 CYS A 216 CYS A 240 1555 1555 2.02 SSBOND 3 CYS A 282 CYS A 295 1555 1555 2.04 SSBOND 4 CYS A 382 CYS A 395 1555 1555 2.04 SSBOND 5 CYS A 387 CYS A 499 1555 1555 2.03 SSBOND 6 CYS A 493 CYS A 503 1555 1555 2.00 SSBOND 7 CYS A 565 CYS A 574 1555 1555 2.04 SSBOND 8 CYS B 189 CYS B 601 1555 1555 2.03 SSBOND 9 CYS B 216 CYS B 240 1555 1555 2.03 SSBOND 10 CYS B 282 CYS B 295 1555 1555 2.04 SSBOND 11 CYS B 382 CYS B 395 1555 1555 2.03 SSBOND 12 CYS B 387 CYS B 499 1555 1555 2.03 SSBOND 13 CYS B 493 CYS B 503 1555 1555 2.03 SSBOND 14 CYS B 565 CYS B 574 1555 1555 2.04 SSBOND 15 CYS C 22 CYS C 97 1555 1555 2.03 SSBOND 16 CYS C 156 CYS C 212 1555 1555 2.03 SSBOND 17 CYS D 23 CYS D 88 1555 1555 2.03 SSBOND 18 CYS D 134 CYS D 194 1555 1555 2.04 SSBOND 19 CYS E 22 CYS E 97 1555 1555 2.03 SSBOND 20 CYS E 156 CYS E 212 1555 1555 2.03 SSBOND 21 CYS F 23 CYS F 88 1555 1555 2.02 SSBOND 22 CYS F 134 CYS F 194 1555 1555 2.05 LINK ND2 ASN A 306 C1 NAG I 1 1555 1555 1.45 LINK ND2 ASN A 378 C1 NAG A 701 1555 1555 1.45 LINK ND2 ASN A 417 C1 NAG G 1 1555 1555 1.43 LINK ND2 ASN A 529 C1 NAG H 1 1555 1555 1.44 LINK ND2 ASN B 306 C1 NAG L 1 1555 1555 1.45 LINK ND2 ASN B 378 C1 NAG B 701 1555 1555 1.44 LINK ND2 ASN B 417 C1 NAG J 1 1555 1555 1.42 LINK ND2 ASN B 529 C1 NAG K 1 1555 1555 1.43 LINK O4 NAG G 1 C1 NAG G 2 1555 1555 1.43 LINK O6 NAG G 1 C1 FUC G 4 1555 1555 1.45 LINK O4 NAG G 2 C1 BMA G 3 1555 1555 1.45 LINK O4 NAG H 1 C1 NAG H 2 1555 1555 1.44 LINK O6 NAG H 1 C1 FUC H 5 1555 1555 1.45 LINK O4 NAG H 2 C1 BMA H 3 1555 1555 1.44 LINK O3 BMA H 3 C1 MAN H 4 1555 1555 1.44 LINK O4 NAG I 1 C1 NAG I 2 1555 1555 1.44 LINK O4 NAG I 2 C1 BMA I 3 1555 1555 1.43 LINK O4 NAG J 1 C1 NAG J 2 1555 1555 1.47 LINK O3 NAG J 1 C1 FUC J 4 1555 1555 1.47 LINK O6 NAG J 1 C1 FUC J 5 1555 1555 1.44 LINK O4 NAG J 2 C1 BMA J 3 1555 1555 1.45 LINK O4 NAG K 1 C1 NAG K 2 1555 1555 1.46 LINK O6 NAG K 1 C1 FUC K 5 1555 1555 1.44 LINK O4 NAG K 2 C1 BMA K 3 1555 1555 1.44 LINK O3 BMA K 3 C1 MAN K 4 1555 1555 1.45 LINK O4 NAG L 1 C1 NAG L 2 1555 1555 1.45 LINK O4 NAG L 2 C1 BMA L 3 1555 1555 1.45 CISPEP 1 ASN A 473 PRO A 474 0 -6.72 CISPEP 2 ASN B 473 PRO B 474 0 -2.33 CISPEP 3 PHE C 162 PRO C 163 0 -26.44 CISPEP 4 SER D 7 PRO D 8 0 6.24 CISPEP 5 THR D 94 PRO D 95 0 7.88 CISPEP 6 TYR D 140 PRO D 141 0 2.03 CISPEP 7 PHE E 162 PRO E 163 0 3.16 CISPEP 8 SER F 7 PRO F 8 0 0.95 CISPEP 9 THR F 94 PRO F 95 0 16.07 CISPEP 10 TYR F 140 PRO F 141 0 1.75 CRYST1 193.422 193.422 198.111 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005170 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005170 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005048 0.00000