data_8XC7 # _entry.id 8XC7 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.399 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8XC7 pdb_00008xc7 10.2210/pdb8xc7/pdb WWPDB D_1300042768 ? ? BMRB 36621 ? 10.13018/BMR36621 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2024-12-04 2 'Structure model' 1 1 2024-12-11 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 2 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category citation # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.pdbx_database_id_PubMed' 2 2 'Structure model' '_citation.title' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr . _pdbx_database_status.entry_id 8XC7 _pdbx_database_status.recvd_initial_deposition_date 2023-12-08 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs . _pdbx_database_status.status_code_nmr_data REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible N # _pdbx_database_related.db_name BMRB _pdbx_database_related.details ;Structure of LL-D49194-alpha-1 covalently bound to guanosine-2'-fluorinated d(AACCGGTT)2 ; _pdbx_database_related.db_id 36621 _pdbx_database_related.content_type unspecified # _pdbx_contact_author.id 2 _pdbx_contact_author.email gaorq@sioc.ac.cn _pdbx_contact_author.name_first Gao _pdbx_contact_author.name_last Ruo-Qin _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0009-0007-8186-5063 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Gao, R.Q.' 1 0009-0007-8186-5063 'Tang, G.L.' 2 0000-0003-3149-4683 'Cao, C.' 3 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Jacs Au' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2691-3704 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 4 _citation.language ? _citation.page_first 3641 _citation.page_last 3648 _citation.title 'Different DNA Binding and Damage Mode between Anticancer Antibiotics Trioxacarcin A and LL-D49194 alpha 1.' _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/jacsau.4c00611 _citation.pdbx_database_id_PubMed 39328742 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Gao, R.Q.' 1 ? primary 'Hu, X.D.' 2 ? primary 'Zhou, Q.' 3 ? primary 'Hou, X.F.' 4 ? primary 'Cao, C.' 5 ? primary 'Tang, G.L.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*AP*AP*CP*CP*2''F-GP*2''F-GP*TP*T)-3') ; 2382.619 2 ? ? ? ? 2 non-polymer syn LL-D49194alpha1 995.024 2 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(3D1)(DA)(DC)(DC)(GF2)(GF2)(DT)(DT)' _entity_poly.pdbx_seq_one_letter_code_can XACCXXTT _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name LL-D49194alpha1 _pdbx_entity_nonpoly.comp_id A1LVV # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 3D1 n 1 2 DA n 1 3 DC n 1 4 DC n 1 5 GF2 n 1 6 GF2 n 1 7 DT n 1 8 DT n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 8 _pdbx_entity_src_syn.organism_scientific 'DNA molecule' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 2853804 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 3D1 non-polymer . '(2R,3S,5R)-5-(6-amino-9H-purin-9-yl)-tetrahydro-2-(hydroxymethyl)furan-3-ol' "2'-DEOXYADENOSINE" 'C10 H13 N5 O3' 251.242 A1LVV non-polymer . LL-D49194alpha1 ? 'C48 H66 O22' 995.024 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GF2 'DNA linking' n ;2'-deoxy-2'-fluoroguanosine 5'-(dihydrogen phosphate) ; ? 'C10 H13 F N5 O7 P' 365.212 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 3D1 1 1 1 3D1 ADE A . n A 1 2 DA 2 2 2 DA DA A . n A 1 3 DC 3 3 3 DC DC A . n A 1 4 DC 4 4 4 DC DC A . n A 1 5 GF2 5 5 5 GF2 FGU A . n A 1 6 GF2 6 6 6 GF2 LLD A A n A 1 7 DT 7 7 7 DT DT A . n A 1 8 DT 8 8 8 DT DT A . n B 1 1 3D1 1 9 9 3D1 ADE B . n B 1 2 DA 2 10 10 DA DA B . n B 1 3 DC 3 11 11 DC DC B . n B 1 4 DC 4 12 12 DC DC B . n B 1 5 GF2 5 13 13 GF2 FGU B . n B 1 6 GF2 6 14 14 GF2 LLD B A n B 1 7 DT 7 15 15 DT DT B . n B 1 8 DT 8 16 16 DT DT B . n # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 A1LVV ? ? A1LVV ? ? 'SUBJECT OF INVESTIGATION' ? 2 GF2 ? ? GF2 ? ? 'SUBJECT OF INVESTIGATION' ? # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 A1LVV 1 101 6 A1LVV LLD A . D 2 A1LVV 1 101 14 A1LVV LLD B . # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8XC7 _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 8XC7 _struct.title ;Structure of LL-D49194-alpha-1 covalently bound to guanosine-2'-fluorinated d(AACCGGTT)2 ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8XC7 _struct_keywords.text 'Complex, DNA alkylation, Base mismatch, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8XC7 _struct_ref.pdbx_db_accession 8XC7 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8XC7 A 1 ? 8 ? 8XC7 1 ? 8 ? 1 8 2 1 8XC7 B 1 ? 8 ? 8XC7 9 ? 16 ? 9 16 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'NMR Distance Restraints' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale one ? A 3D1 1 "O3'" ? ? ? 1_555 A DA 2 P ? ? A 3D1 1 A DA 2 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale2 covale both ? A DC 4 "O3'" ? ? ? 1_555 A GF2 5 P ? ? A DC 4 A GF2 5 1_555 ? ? ? ? ? ? ? 1.612 ? ? covale3 covale one ? A GF2 5 "O3'" ? ? ? 1_555 A GF2 6 P ? A A GF2 5 A GF2 6 1_555 ? ? ? ? ? ? ? 1.611 ? ? covale4 covale one ? A GF2 6 "O3'" ? A ? 1_555 A DT 7 P ? ? A GF2 6 A DT 7 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale5 covale none ? A GF2 6 N7 ? A ? 1_555 C A1LVV . C48 ? ? A GF2 6 A A1LVV 101 1_555 ? ? ? ? ? ? ? 1.524 ? ? covale6 covale one ? B 3D1 1 "O3'" ? ? ? 1_555 B DA 2 P ? ? B 3D1 9 B DA 10 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale7 covale both ? B DC 4 "O3'" ? ? ? 1_555 B GF2 5 P ? ? B DC 12 B GF2 13 1_555 ? ? ? ? ? ? ? 1.612 ? ? covale8 covale one ? B GF2 5 "O3'" ? ? ? 1_555 B GF2 6 P ? A B GF2 13 B GF2 14 1_555 ? ? ? ? ? ? ? 1.611 ? ? covale9 covale one ? B GF2 6 "O3'" ? A ? 1_555 B DT 7 P ? ? B GF2 14 B DT 15 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale10 covale none ? B GF2 6 N7 ? A ? 1_555 D A1LVV . C48 ? ? B GF2 14 B A1LVV 101 1_555 ? ? ? ? ? ? ? 1.523 ? ? hydrog1 hydrog ? ? A DA 2 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 2 B DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DA 2 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 2 B DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B GF2 6 N1 ? A A DC 3 B GF2 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B GF2 6 O6 ? A A DC 3 B GF2 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B GF2 6 N2 ? A A DC 3 B GF2 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 4 N3 ? ? ? 1_555 B GF2 5 N1 ? ? A DC 4 B GF2 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 4 N4 ? ? ? 1_555 B GF2 5 O6 ? ? A DC 4 B GF2 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B GF2 5 N2 ? ? A DC 4 B GF2 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A GF2 5 N1 ? ? ? 1_555 B DC 4 N3 ? ? A GF2 5 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A GF2 5 N2 ? ? ? 1_555 B DC 4 O2 ? ? A GF2 5 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A GF2 5 O6 ? ? ? 1_555 B DC 4 N4 ? ? A GF2 5 B DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A GF2 6 N1 ? A ? 1_555 B DC 3 N3 ? ? A GF2 6 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A GF2 6 N2 ? A ? 1_555 B DC 3 O2 ? ? A GF2 6 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A GF2 6 O6 ? A ? 1_555 B DC 3 N4 ? ? A GF2 6 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 2 N1 ? ? A DT 8 B DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 2 N6 ? ? A DT 8 B DA 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _pdbx_entry_details.entry_id 8XC7 _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 119.25 122.90 -3.65 0.60 N 2 1 C6 B DT 16 ? ? C5 B DT 16 ? ? C7 B DT 16 ? ? 119.30 122.90 -3.60 0.60 N 3 2 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 119.22 122.90 -3.68 0.60 N 4 2 C6 B DT 16 ? ? C5 B DT 16 ? ? C7 B DT 16 ? ? 119.26 122.90 -3.64 0.60 N 5 3 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 119.20 122.90 -3.70 0.60 N 6 3 C6 B DT 16 ? ? C5 B DT 16 ? ? C7 B DT 16 ? ? 119.26 122.90 -3.64 0.60 N 7 4 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 119.26 122.90 -3.64 0.60 N 8 4 C6 B DT 16 ? ? C5 B DT 16 ? ? C7 B DT 16 ? ? 119.23 122.90 -3.67 0.60 N 9 5 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 119.24 122.90 -3.66 0.60 N 10 5 C6 B DT 16 ? ? C5 B DT 16 ? ? C7 B DT 16 ? ? 119.26 122.90 -3.64 0.60 N 11 6 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 119.24 122.90 -3.66 0.60 N 12 6 C6 B DT 16 ? ? C5 B DT 16 ? ? C7 B DT 16 ? ? 119.22 122.90 -3.68 0.60 N 13 7 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 119.20 122.90 -3.70 0.60 N 14 7 C6 B DT 16 ? ? C5 B DT 16 ? ? C7 B DT 16 ? ? 119.28 122.90 -3.62 0.60 N 15 8 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 119.23 122.90 -3.67 0.60 N 16 8 C6 B DT 16 ? ? C5 B DT 16 ? ? C7 B DT 16 ? ? 119.28 122.90 -3.62 0.60 N 17 9 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 119.25 122.90 -3.65 0.60 N 18 9 C6 B DT 16 ? ? C5 B DT 16 ? ? C7 B DT 16 ? ? 119.30 122.90 -3.60 0.60 N 19 10 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 119.27 122.90 -3.63 0.60 N 20 10 C6 B DT 16 ? ? C5 B DT 16 ? ? C7 B DT 16 ? ? 119.30 122.90 -3.60 0.60 N 21 11 C6 B DT 16 ? ? C5 B DT 16 ? ? C7 B DT 16 ? ? 119.25 122.90 -3.65 0.60 N 22 12 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 119.27 122.90 -3.63 0.60 N 23 12 C6 B DT 16 ? ? C5 B DT 16 ? ? C7 B DT 16 ? ? 119.19 122.90 -3.71 0.60 N 24 13 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 119.29 122.90 -3.61 0.60 N 25 14 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 119.26 122.90 -3.64 0.60 N 26 14 C6 B DT 16 ? ? C5 B DT 16 ? ? C7 B DT 16 ? ? 119.24 122.90 -3.66 0.60 N 27 15 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 119.20 122.90 -3.70 0.60 N 28 16 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 119.22 122.90 -3.68 0.60 N 29 16 C6 B DT 16 ? ? C5 B DT 16 ? ? C7 B DT 16 ? ? 119.28 122.90 -3.62 0.60 N 30 17 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 119.25 122.90 -3.65 0.60 N 31 17 C6 B DT 16 ? ? C5 B DT 16 ? ? C7 B DT 16 ? ? 119.25 122.90 -3.65 0.60 N 32 18 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 119.24 122.90 -3.66 0.60 N 33 18 C6 B DT 16 ? ? C5 B DT 16 ? ? C7 B DT 16 ? ? 119.29 122.90 -3.61 0.60 N 34 19 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 119.22 122.90 -3.68 0.60 N 35 19 C6 B DT 16 ? ? C5 B DT 16 ? ? C7 B DT 16 ? ? 119.19 122.90 -3.71 0.60 N 36 20 C6 A DT 8 ? ? C5 A DT 8 ? ? C7 A DT 8 ? ? 119.25 122.90 -3.65 0.60 N 37 20 C6 B DT 16 ? ? C5 B DT 16 ? ? C7 B DT 16 ? ? 119.29 122.90 -3.61 0.60 N # _pdbx_nmr_ensemble.entry_id 8XC7 _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 8XC7 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'closest to the average' # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '2 mM DNA-LLD, 10 mM sodium phosphate, 20 mM sodium chloride, 90% H2O/10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' _pdbx_nmr_sample_details.label DNA-LLD _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details ? # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 DNA-LLD 2 ? mM 'natural abundance' 1 'sodium phosphate' 10 ? mM 'natural abundance' 1 'sodium chloride' 20 ? mM 'natural abundance' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 293 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 7.2 _pdbx_nmr_exptl_sample_conditions.ionic_strength 44.4 _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label DNA-LLD _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-1H NOESY' 1 isotropic 2 1 1 '2D 1H-1H COSY' 1 isotropic 5 1 1 '2D 1H-1H TOCSY' 1 isotropic # _pdbx_nmr_refine.entry_id 8XC7 _pdbx_nmr_refine.method 'molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 2 # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 'chemical shift assignment' NMRFAM-SPARKY ? 'Woonghee Lee,* Marco Tonelli, and John L. Markley*' 2 'structure calculation' 'X-PLOR NIH' ? 'Schwieters, Kuszewski, Tjandra and Clore' 3 collection NMRPipe ? 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' 4 'peak picking' NMRFAM-SPARKY ? 'Woonghee Lee,* Marco Tonelli, and John L. Markley*' 5 'chemical shift assignment' NMRFAM-SPARKY ? 'Woonghee Lee,* Marco Tonelli, and John L. Markley*' 6 refinement 'X-PLOR NIH' ? 'Schwieters, Kuszewski, Tjandra and Clore' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 3D1 "O5'" O N N 1 3D1 "C5'" C N N 2 3D1 "C4'" C N R 3 3D1 "O4'" O N N 4 3D1 "C1'" C N R 5 3D1 N9 N Y N 6 3D1 C4 C Y N 7 3D1 N3 N Y N 8 3D1 C2 C Y N 9 3D1 N1 N Y N 10 3D1 C6 C Y N 11 3D1 N6 N N N 12 3D1 C5 C Y N 13 3D1 N7 N Y N 14 3D1 C8 C Y N 15 3D1 "C2'" C N N 16 3D1 "C3'" C N S 17 3D1 "O3'" O N N 18 3D1 "H5'" H N N 19 3D1 "H5'1" H N N 20 3D1 "H5'2" H N N 21 3D1 "H4'" H N N 22 3D1 "H1'" H N N 23 3D1 H2 H N N 24 3D1 HN61 H N N 25 3D1 HN62 H N N 26 3D1 H8 H N N 27 3D1 "H2'1" H N N 28 3D1 "H2'2" H N N 29 3D1 "H3'" H N N 30 3D1 H1 H N N 31 A1LVV C14 C N N 32 A1LVV C11 C N R 33 A1LVV C7 C N N 34 A1LVV C9 C N R 35 A1LVV C10 C N N 36 A1LVV C12 C N N 37 A1LVV C13 C N R 38 A1LVV C3 C Y N 39 A1LVV C15 C N N 40 A1LVV C17 C N N 41 A1LVV C20 C Y N 42 A1LVV C24 C N R 43 A1LVV C26 C N N 44 A1LVV C28 C N N 45 A1LVV C16 C N S 46 A1LVV C18 C Y N 47 A1LVV C23 C N S 48 A1LVV C25 C N R 49 A1LVV C27 C N S 50 A1LVV C29 C N R 51 A1LVV O10 O N N 52 A1LVV O21 O N N 53 A1LVV O22 O N N 54 A1LVV C1 C N N 55 A1LVV O1 O N N 56 A1LVV O2 O N N 57 A1LVV O3 O N N 58 A1LVV O4 O N N 59 A1LVV O5 O N N 60 A1LVV O7 O N N 61 A1LVV O8 O N N 62 A1LVV O9 O N N 63 A1LVV O11 O N N 64 A1LVV O12 O N N 65 A1LVV O13 O N N 66 A1LVV O14 O N N 67 A1LVV O15 O N N 68 A1LVV O16 O N N 69 A1LVV O17 O N N 70 A1LVV O18 O N N 71 A1LVV C19 C Y N 72 A1LVV O19 O N N 73 A1LVV O20 O N N 74 A1LVV C21 C N R 75 A1LVV C22 C N N 76 A1LVV O29 O N N 77 A1LVV C30 C N N 78 A1LVV C31 C N R 79 A1LVV C32 C N S 80 A1LVV C33 C N N 81 A1LVV C34 C N R 82 A1LVV C35 C N N 83 A1LVV C36 C N R 84 A1LVV C37 C N S 85 A1LVV C38 C N N 86 A1LVV C39 C N S 87 A1LVV C40 C N N 88 A1LVV C41 C N S 89 A1LVV C42 C Y N 90 A1LVV C43 C Y N 91 A1LVV C44 C N N 92 A1LVV C45 C Y N 93 A1LVV C46 C Y N 94 A1LVV C47 C N S 95 A1LVV C48 C N N 96 A1LVV C49 C N S 97 A1LVV C55 C Y N 98 A1LVV C56 C Y N 99 A1LVV C57 C N S 100 A1LVV C58 C N N 101 A1LVV H7 H N N 102 A1LVV H6 H N N 103 A1LVV H9 H N N 104 A1LVV H11 H N N 105 A1LVV H10 H N N 106 A1LVV H13 H N N 107 A1LVV H14 H N N 108 A1LVV H12 H N N 109 A1LVV H16 H N N 110 A1LVV H18 H N N 111 A1LVV H19 H N N 112 A1LVV H17 H N N 113 A1LVV H87 H N N 114 A1LVV H88 H N N 115 A1LVV H89 H N N 116 A1LVV H30 H N N 117 A1LVV H31 H N N 118 A1LVV H32 H N N 119 A1LVV H34 H N N 120 A1LVV H35 H N N 121 A1LVV H20 H N N 122 A1LVV H28 H N N 123 A1LVV H29 H N N 124 A1LVV H33 H N N 125 A1LVV H63 H N N 126 A1LVV H3 H N N 127 A1LVV H98 H N N 128 A1LVV H2 H N N 129 A1LVV H5 H N N 130 A1LVV H15 H N N 131 A1LVV H24 H N N 132 A1LVV H39 H N N 133 A1LVV H47 H N N 134 A1LVV H49 H N N 135 A1LVV H27 H N N 136 A1LVV H25 H N N 137 A1LVV H26 H N N 138 A1LVV H38 H N N 139 A1LVV H36 H N N 140 A1LVV H37 H N N 141 A1LVV H40 H N N 142 A1LVV H41 H N N 143 A1LVV H42 H N N 144 A1LVV H43 H N N 145 A1LVV H45 H N N 146 A1LVV H46 H N N 147 A1LVV H44 H N N 148 A1LVV H48 H N N 149 A1LVV H50 H N N 150 A1LVV H52 H N N 151 A1LVV H53 H N N 152 A1LVV H51 H N N 153 A1LVV H54 H N N 154 A1LVV H56 H N N 155 A1LVV H57 H N N 156 A1LVV H55 H N N 157 A1LVV H58 H N N 158 A1LVV H59 H N N 159 A1LVV H60 H N N 160 A1LVV H61 H N N 161 A1LVV H62 H N N 162 A1LVV H1 H N N 163 A1LVV H64 H N N 164 A1LVV H65 H N N 165 A1LVV H66 H N N 166 A1LVV H4 H N N 167 DA OP3 O N N 168 DA P P N N 169 DA OP1 O N N 170 DA OP2 O N N 171 DA "O5'" O N N 172 DA "C5'" C N N 173 DA "C4'" C N R 174 DA "O4'" O N N 175 DA "C3'" C N S 176 DA "O3'" O N N 177 DA "C2'" C N N 178 DA "C1'" C N R 179 DA N9 N Y N 180 DA C8 C Y N 181 DA N7 N Y N 182 DA C5 C Y N 183 DA C6 C Y N 184 DA N6 N N N 185 DA N1 N Y N 186 DA C2 C Y N 187 DA N3 N Y N 188 DA C4 C Y N 189 DA HOP3 H N N 190 DA HOP2 H N N 191 DA "H5'" H N N 192 DA "H5''" H N N 193 DA "H4'" H N N 194 DA "H3'" H N N 195 DA "HO3'" H N N 196 DA "H2'" H N N 197 DA "H2''" H N N 198 DA "H1'" H N N 199 DA H8 H N N 200 DA H61 H N N 201 DA H62 H N N 202 DA H2 H N N 203 DC OP3 O N N 204 DC P P N N 205 DC OP1 O N N 206 DC OP2 O N N 207 DC "O5'" O N N 208 DC "C5'" C N N 209 DC "C4'" C N R 210 DC "O4'" O N N 211 DC "C3'" C N S 212 DC "O3'" O N N 213 DC "C2'" C N N 214 DC "C1'" C N R 215 DC N1 N N N 216 DC C2 C N N 217 DC O2 O N N 218 DC N3 N N N 219 DC C4 C N N 220 DC N4 N N N 221 DC C5 C N N 222 DC C6 C N N 223 DC HOP3 H N N 224 DC HOP2 H N N 225 DC "H5'" H N N 226 DC "H5''" H N N 227 DC "H4'" H N N 228 DC "H3'" H N N 229 DC "HO3'" H N N 230 DC "H2'" H N N 231 DC "H2''" H N N 232 DC "H1'" H N N 233 DC H41 H N N 234 DC H42 H N N 235 DC H5 H N N 236 DC H6 H N N 237 DT OP3 O N N 238 DT P P N N 239 DT OP1 O N N 240 DT OP2 O N N 241 DT "O5'" O N N 242 DT "C5'" C N N 243 DT "C4'" C N R 244 DT "O4'" O N N 245 DT "C3'" C N S 246 DT "O3'" O N N 247 DT "C2'" C N N 248 DT "C1'" C N R 249 DT N1 N N N 250 DT C2 C N N 251 DT O2 O N N 252 DT N3 N N N 253 DT C4 C N N 254 DT O4 O N N 255 DT C5 C N N 256 DT C7 C N N 257 DT C6 C N N 258 DT HOP3 H N N 259 DT HOP2 H N N 260 DT "H5'" H N N 261 DT "H5''" H N N 262 DT "H4'" H N N 263 DT "H3'" H N N 264 DT "HO3'" H N N 265 DT "H2'" H N N 266 DT "H2''" H N N 267 DT "H1'" H N N 268 DT H3 H N N 269 DT H71 H N N 270 DT H72 H N N 271 DT H73 H N N 272 DT H6 H N N 273 GF2 F F N N 274 GF2 P P N N 275 GF2 N1 N N N 276 GF2 C2 C N N 277 GF2 N2 N N N 278 GF2 N3 N N N 279 GF2 C4 C Y N 280 GF2 C5 C Y N 281 GF2 C6 C N N 282 GF2 O6 O N N 283 GF2 N7 N Y N 284 GF2 C8 C Y N 285 GF2 N9 N Y N 286 GF2 "C1'" C N R 287 GF2 OP2 O N N 288 GF2 "C2'" C N R 289 GF2 OP1 O N N 290 GF2 "C3'" C N R 291 GF2 "O3'" O N N 292 GF2 "C4'" C N R 293 GF2 "O4'" O N N 294 GF2 "C5'" C N N 295 GF2 "O5'" O N N 296 GF2 OP3 O N N 297 GF2 HN1 H N N 298 GF2 HN2 H N N 299 GF2 HN2A H N N 300 GF2 H8 H N N 301 GF2 "H1'" H N N 302 GF2 HOP2 H N N 303 GF2 "H2'" H N N 304 GF2 "H3'" H N N 305 GF2 "HO3'" H N N 306 GF2 "H4'" H N N 307 GF2 "H5'" H N N 308 GF2 "H5'A" H N N 309 GF2 HOP3 H N N 310 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 3D1 "O5'" "C5'" sing N N 1 3D1 "O5'" "H5'" sing N N 2 3D1 "C5'" "C4'" sing N N 3 3D1 "C5'" "H5'1" sing N N 4 3D1 "C5'" "H5'2" sing N N 5 3D1 "C4'" "O4'" sing N N 6 3D1 "C4'" "C3'" sing N N 7 3D1 "C4'" "H4'" sing N N 8 3D1 "O4'" "C1'" sing N N 9 3D1 "C1'" N9 sing N N 10 3D1 "C1'" "C2'" sing N N 11 3D1 "C1'" "H1'" sing N N 12 3D1 N9 C4 sing Y N 13 3D1 N9 C8 sing Y N 14 3D1 C4 N3 doub Y N 15 3D1 C4 C5 sing Y N 16 3D1 N3 C2 sing Y N 17 3D1 C2 N1 doub Y N 18 3D1 C2 H2 sing N N 19 3D1 N1 C6 sing Y N 20 3D1 C6 N6 sing N N 21 3D1 C6 C5 doub Y N 22 3D1 N6 HN61 sing N N 23 3D1 N6 HN62 sing N N 24 3D1 C5 N7 sing Y N 25 3D1 N7 C8 doub Y N 26 3D1 C8 H8 sing N N 27 3D1 "C2'" "C3'" sing N N 28 3D1 "C2'" "H2'1" sing N N 29 3D1 "C2'" "H2'2" sing N N 30 3D1 "C3'" "O3'" sing N N 31 3D1 "C3'" "H3'" sing N N 32 3D1 "O3'" H1 sing N N 33 A1LVV C15 C14 sing N N 34 A1LVV O7 C14 doub N N 35 A1LVV C14 O29 sing N N 36 A1LVV C12 C11 sing N N 37 A1LVV O29 C13 sing N N 38 A1LVV C13 C11 sing N N 39 A1LVV C13 C16 sing N N 40 A1LVV C11 O5 sing N N 41 A1LVV C11 C10 sing N N 42 A1LVV C17 C16 sing N N 43 A1LVV C16 O8 sing N N 44 A1LVV C10 C9 sing N N 45 A1LVV O8 C9 sing N N 46 A1LVV C9 O4 sing N N 47 A1LVV C1 O1 sing N N 48 A1LVV O4 C49 sing N N 49 A1LVV O1 C56 sing N N 50 A1LVV C49 C3 sing N N 51 A1LVV C49 C7 sing N N 52 A1LVV C56 C3 doub Y N 53 A1LVV C56 C46 sing Y N 54 A1LVV C3 C55 sing Y N 55 A1LVV C7 C57 sing N N 56 A1LVV C45 C46 doub Y N 57 A1LVV C45 C43 sing Y N 58 A1LVV C46 C19 sing Y N 59 A1LVV C44 C43 sing N N 60 A1LVV C57 C58 sing N N 61 A1LVV C57 O3 sing N N 62 A1LVV C43 C42 doub Y N 63 A1LVV C55 C58 sing N N 64 A1LVV C55 C18 doub Y N 65 A1LVV C58 O2 doub N N 66 A1LVV C19 C18 sing Y N 67 A1LVV C19 C20 doub Y N 68 A1LVV C18 O9 sing N N 69 A1LVV C42 C20 sing Y N 70 A1LVV C42 C41 sing N N 71 A1LVV C20 O10 sing N N 72 A1LVV C48 C47 sing N N 73 A1LVV O21 C41 sing N N 74 A1LVV O21 C24 sing N N 75 A1LVV O13 C26 sing N N 76 A1LVV O13 C25 sing N N 77 A1LVV C41 C23 sing N N 78 A1LVV O10 C21 sing N N 79 A1LVV O14 C25 sing N N 80 A1LVV O14 C27 sing N N 81 A1LVV C24 C47 sing N N 82 A1LVV C24 C25 sing N N 83 A1LVV C24 O12 sing N N 84 A1LVV C47 C21 sing N N 85 A1LVV C47 O22 sing N N 86 A1LVV C21 C23 sing N N 87 A1LVV C21 O11 sing N N 88 A1LVV C23 O12 sing N N 89 A1LVV C28 C27 sing N N 90 A1LVV C28 C29 sing N N 91 A1LVV O15 C29 sing N N 92 A1LVV C27 O20 sing N N 93 A1LVV O20 C39 sing N N 94 A1LVV O11 C22 sing N N 95 A1LVV C29 C30 sing N N 96 A1LVV C29 C31 sing N N 97 A1LVV C39 C31 sing N N 98 A1LVV C39 C40 sing N N 99 A1LVV C31 O16 sing N N 100 A1LVV O16 C32 sing N N 101 A1LVV O19 C32 sing N N 102 A1LVV O19 C37 sing N N 103 A1LVV O17 C34 sing N N 104 A1LVV C32 C33 sing N N 105 A1LVV C37 C36 sing N N 106 A1LVV C37 C38 sing N N 107 A1LVV C34 C33 sing N N 108 A1LVV C34 C36 sing N N 109 A1LVV C34 C35 sing N N 110 A1LVV C36 O18 sing N N 111 A1LVV C7 H7 sing N N 112 A1LVV C7 H6 sing N N 113 A1LVV C9 H9 sing N N 114 A1LVV C10 H11 sing N N 115 A1LVV C10 H10 sing N N 116 A1LVV C12 H13 sing N N 117 A1LVV C12 H14 sing N N 118 A1LVV C12 H12 sing N N 119 A1LVV C13 H16 sing N N 120 A1LVV C15 H18 sing N N 121 A1LVV C15 H19 sing N N 122 A1LVV C15 H17 sing N N 123 A1LVV C17 H87 sing N N 124 A1LVV C17 H88 sing N N 125 A1LVV C17 H89 sing N N 126 A1LVV C26 H30 sing N N 127 A1LVV C26 H31 sing N N 128 A1LVV C26 H32 sing N N 129 A1LVV C28 H34 sing N N 130 A1LVV C28 H35 sing N N 131 A1LVV C16 H20 sing N N 132 A1LVV C23 H28 sing N N 133 A1LVV C25 H29 sing N N 134 A1LVV C27 H33 sing N N 135 A1LVV O22 H63 sing N N 136 A1LVV C1 H3 sing N N 137 A1LVV C1 H98 sing N N 138 A1LVV C1 H2 sing N N 139 A1LVV O3 H5 sing N N 140 A1LVV O5 H15 sing N N 141 A1LVV O9 H24 sing N N 142 A1LVV O15 H39 sing N N 143 A1LVV O17 H47 sing N N 144 A1LVV O18 H49 sing N N 145 A1LVV C22 H27 sing N N 146 A1LVV C22 H25 sing N N 147 A1LVV C22 H26 sing N N 148 A1LVV C30 H38 sing N N 149 A1LVV C30 H36 sing N N 150 A1LVV C30 H37 sing N N 151 A1LVV C31 H40 sing N N 152 A1LVV C32 H41 sing N N 153 A1LVV C33 H42 sing N N 154 A1LVV C33 H43 sing N N 155 A1LVV C35 H45 sing N N 156 A1LVV C35 H46 sing N N 157 A1LVV C35 H44 sing N N 158 A1LVV C36 H48 sing N N 159 A1LVV C37 H50 sing N N 160 A1LVV C38 H52 sing N N 161 A1LVV C38 H53 sing N N 162 A1LVV C38 H51 sing N N 163 A1LVV C39 H54 sing N N 164 A1LVV C40 H56 sing N N 165 A1LVV C40 H57 sing N N 166 A1LVV C40 H55 sing N N 167 A1LVV C41 H58 sing N N 168 A1LVV C44 H59 sing N N 169 A1LVV C44 H60 sing N N 170 A1LVV C44 H61 sing N N 171 A1LVV C45 H62 sing N N 172 A1LVV C48 H1 sing N N 173 A1LVV C48 H64 sing N N 174 A1LVV C48 H65 sing N N 175 A1LVV C49 H66 sing N N 176 A1LVV C57 H4 sing N N 177 DA OP3 P sing N N 178 DA OP3 HOP3 sing N N 179 DA P OP1 doub N N 180 DA P OP2 sing N N 181 DA P "O5'" sing N N 182 DA OP2 HOP2 sing N N 183 DA "O5'" "C5'" sing N N 184 DA "C5'" "C4'" sing N N 185 DA "C5'" "H5'" sing N N 186 DA "C5'" "H5''" sing N N 187 DA "C4'" "O4'" sing N N 188 DA "C4'" "C3'" sing N N 189 DA "C4'" "H4'" sing N N 190 DA "O4'" "C1'" sing N N 191 DA "C3'" "O3'" sing N N 192 DA "C3'" "C2'" sing N N 193 DA "C3'" "H3'" sing N N 194 DA "O3'" "HO3'" sing N N 195 DA "C2'" "C1'" sing N N 196 DA "C2'" "H2'" sing N N 197 DA "C2'" "H2''" sing N N 198 DA "C1'" N9 sing N N 199 DA "C1'" "H1'" sing N N 200 DA N9 C8 sing Y N 201 DA N9 C4 sing Y N 202 DA C8 N7 doub Y N 203 DA C8 H8 sing N N 204 DA N7 C5 sing Y N 205 DA C5 C6 sing Y N 206 DA C5 C4 doub Y N 207 DA C6 N6 sing N N 208 DA C6 N1 doub Y N 209 DA N6 H61 sing N N 210 DA N6 H62 sing N N 211 DA N1 C2 sing Y N 212 DA C2 N3 doub Y N 213 DA C2 H2 sing N N 214 DA N3 C4 sing Y N 215 DC OP3 P sing N N 216 DC OP3 HOP3 sing N N 217 DC P OP1 doub N N 218 DC P OP2 sing N N 219 DC P "O5'" sing N N 220 DC OP2 HOP2 sing N N 221 DC "O5'" "C5'" sing N N 222 DC "C5'" "C4'" sing N N 223 DC "C5'" "H5'" sing N N 224 DC "C5'" "H5''" sing N N 225 DC "C4'" "O4'" sing N N 226 DC "C4'" "C3'" sing N N 227 DC "C4'" "H4'" sing N N 228 DC "O4'" "C1'" sing N N 229 DC "C3'" "O3'" sing N N 230 DC "C3'" "C2'" sing N N 231 DC "C3'" "H3'" sing N N 232 DC "O3'" "HO3'" sing N N 233 DC "C2'" "C1'" sing N N 234 DC "C2'" "H2'" sing N N 235 DC "C2'" "H2''" sing N N 236 DC "C1'" N1 sing N N 237 DC "C1'" "H1'" sing N N 238 DC N1 C2 sing N N 239 DC N1 C6 sing N N 240 DC C2 O2 doub N N 241 DC C2 N3 sing N N 242 DC N3 C4 doub N N 243 DC C4 N4 sing N N 244 DC C4 C5 sing N N 245 DC N4 H41 sing N N 246 DC N4 H42 sing N N 247 DC C5 C6 doub N N 248 DC C5 H5 sing N N 249 DC C6 H6 sing N N 250 DT OP3 P sing N N 251 DT OP3 HOP3 sing N N 252 DT P OP1 doub N N 253 DT P OP2 sing N N 254 DT P "O5'" sing N N 255 DT OP2 HOP2 sing N N 256 DT "O5'" "C5'" sing N N 257 DT "C5'" "C4'" sing N N 258 DT "C5'" "H5'" sing N N 259 DT "C5'" "H5''" sing N N 260 DT "C4'" "O4'" sing N N 261 DT "C4'" "C3'" sing N N 262 DT "C4'" "H4'" sing N N 263 DT "O4'" "C1'" sing N N 264 DT "C3'" "O3'" sing N N 265 DT "C3'" "C2'" sing N N 266 DT "C3'" "H3'" sing N N 267 DT "O3'" "HO3'" sing N N 268 DT "C2'" "C1'" sing N N 269 DT "C2'" "H2'" sing N N 270 DT "C2'" "H2''" sing N N 271 DT "C1'" N1 sing N N 272 DT "C1'" "H1'" sing N N 273 DT N1 C2 sing N N 274 DT N1 C6 sing N N 275 DT C2 O2 doub N N 276 DT C2 N3 sing N N 277 DT N3 C4 sing N N 278 DT N3 H3 sing N N 279 DT C4 O4 doub N N 280 DT C4 C5 sing N N 281 DT C5 C7 sing N N 282 DT C5 C6 doub N N 283 DT C7 H71 sing N N 284 DT C7 H72 sing N N 285 DT C7 H73 sing N N 286 DT C6 H6 sing N N 287 GF2 P "O5'" sing N N 288 GF2 N1 C2 sing N N 289 GF2 C2 N3 doub N N 290 GF2 C2 N2 sing N N 291 GF2 C4 N3 sing N N 292 GF2 C5 C4 doub Y N 293 GF2 C6 N1 sing N N 294 GF2 C6 C5 sing N N 295 GF2 O6 C6 doub N N 296 GF2 N7 C5 sing Y N 297 GF2 N7 C8 doub Y N 298 GF2 C8 N9 sing Y N 299 GF2 N9 C4 sing Y N 300 GF2 N9 "C1'" sing N N 301 GF2 "C1'" "O4'" sing N N 302 GF2 OP2 P sing N N 303 GF2 "C2'" F sing N N 304 GF2 "C2'" "C1'" sing N N 305 GF2 OP1 P doub N N 306 GF2 "C3'" "C2'" sing N N 307 GF2 "C3'" "C4'" sing N N 308 GF2 "O3'" "C3'" sing N N 309 GF2 "C4'" "O4'" sing N N 310 GF2 "C5'" "C4'" sing N N 311 GF2 "O5'" "C5'" sing N N 312 GF2 P OP3 sing N N 313 GF2 N1 HN1 sing N N 314 GF2 N2 HN2 sing N N 315 GF2 N2 HN2A sing N N 316 GF2 C8 H8 sing N N 317 GF2 "C1'" "H1'" sing N N 318 GF2 OP2 HOP2 sing N N 319 GF2 "C2'" "H2'" sing N N 320 GF2 "C3'" "H3'" sing N N 321 GF2 "O3'" "HO3'" sing N N 322 GF2 "C4'" "H4'" sing N N 323 GF2 "C5'" "H5'" sing N N 324 GF2 "C5'" "H5'A" sing N N 325 GF2 OP3 HOP3 sing N N 326 # _ndb_struct_conf_na.entry_id 8XC7 _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DA 2 1_555 B DT 8 1_555 0.128 0.122 0.726 34.340 -9.959 -3.080 1 A_DA2:DT16_B A 2 ? B 16 ? 20 1 1 A DC 3 1_555 B GF2 6 1_555 0.299 -0.410 1.171 5.315 -4.329 -3.378 2 A_DC3:GF214A_B A 3 ? B 14 A 19 1 1 A DC 4 1_555 B GF2 5 1_555 0.358 -0.092 -0.184 0.623 10.451 -2.286 3 A_DC4:GF213_B A 4 ? B 13 ? 19 1 1 A GF2 5 1_555 B DC 4 1_555 -0.391 -0.073 -0.046 11.127 9.502 -2.354 4 A_GF25:DC12_B A 5 ? B 12 ? 19 1 1 A GF2 6 1_555 B DC 3 1_555 -0.276 -0.407 1.175 -5.363 -5.923 -3.867 5 A_GF26A:DC11_B A 6 A B 11 ? 19 1 1 A DT 8 1_555 B DA 2 1_555 -0.087 0.136 0.591 -33.486 -4.704 -2.187 6 A_DT8:DA10_B A 8 ? B 10 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DA 2 1_555 B DT 8 1_555 A DC 3 1_555 B GF2 6 1_555 1.506 0.126 6.933 -17.826 3.617 50.311 -0.333 -4.012 6.108 4.104 20.224 53.296 1 AA_DA2DC3:GF214ADT16_BB A 2 ? B 16 ? A 3 ? B 14 A 1 A DC 3 1_555 B GF2 6 1_555 A DC 4 1_555 B GF2 5 1_555 0.275 -1.461 4.487 3.978 6.764 24.386 -5.832 0.868 3.939 15.508 -9.119 25.600 2 AA_DC3DC4:GF213GF214A_BB A 3 ? B 14 A A 4 ? B 13 ? 1 A DC 4 1_555 B GF2 5 1_555 A GF2 5 1_555 B DC 4 1_555 -0.603 -0.204 3.693 0.094 30.968 24.764 -4.416 0.906 2.186 52.258 -0.159 39.462 3 AA_DC4GF25:DC12GF213_BB A 4 ? B 13 ? A 5 ? B 12 ? 1 A GF2 5 1_555 B DC 4 1_555 A GF2 6 1_555 B DC 3 1_555 -0.454 -1.352 5.198 -5.016 7.084 23.188 -6.484 -1.295 4.585 16.885 11.955 24.739 4 AA_GF25GF26A:DC11DC12_BB A 5 ? B 12 ? A 6 A B 11 ? 1 A GF2 6 1_555 B DC 3 1_555 A DT 8 1_555 B DA 2 1_555 -1.459 -0.109 7.130 17.311 0.459 47.601 -0.197 4.319 6.276 0.548 -20.667 50.480 5 AA_GF26ADT8:DA10DC11_BB A 6 A B 11 ? A 8 ? B 10 ? # _pdbx_audit_support.funding_organization 'National Natural Science Foundation of China (NSFC)' _pdbx_audit_support.country China _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model AVANCE _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 850 _pdbx_nmr_spectrometer.details ? # _atom_sites.entry_id 8XC7 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C F H N O P # loop_ #