HEADER TRANSFERASE 11-DEC-23 8XDS TITLE O-METHYLTRANSFERASE FROM LYCORIS LONGITUBA F186Y VARIANT COMPLEXED TITLE 2 WITH MG AND SAH COMPND MOL_ID: 1; COMPND 2 MOLECULE: NORBELLADINE O-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LYCORIS LONGITUBA; SOURCE 3 ORGANISM_TAXID: 272140; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI M15; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 1007065 KEYWDS O-METHYLTRANSFERASE FAMILY PROTEIN, LLOMT, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.Y.H.SAW,Y.NAKASHIMA,H.MORITA REVDAT 1 07-AUG-24 8XDS 0 JRNL AUTH S.Y.Y.HNIN,Y.NAKASHIMA,T.KODAMA,H.MORITA JRNL TITL STRUCTURE-BASED CATALYTIC MECHANISM OF AMARYLLIDACEAE JRNL TITL 2 O-METHYLTRANSFERASES JRNL REF ACS CATALYSIS 11865 2024 JRNL REFN ESSN 2155-5435 JRNL DOI 10.1021/ACSCATAL.4C03305 REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.920 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 65158 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 3317 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.8600 - 5.6800 1.00 2592 140 0.1645 0.2022 REMARK 3 2 5.6700 - 4.5100 1.00 2566 139 0.1431 0.1918 REMARK 3 3 4.5100 - 3.9400 1.00 2596 124 0.1136 0.1359 REMARK 3 4 3.9400 - 3.5800 1.00 2607 111 0.1252 0.1323 REMARK 3 5 3.5800 - 3.3200 1.00 2561 158 0.1407 0.1916 REMARK 3 6 3.3200 - 3.1300 1.00 2572 136 0.1421 0.1603 REMARK 3 7 3.1300 - 2.9700 1.00 2569 147 0.1598 0.2108 REMARK 3 8 2.9700 - 2.8400 1.00 2623 122 0.1695 0.2307 REMARK 3 9 2.8400 - 2.7300 1.00 2571 126 0.1633 0.2203 REMARK 3 10 2.7300 - 2.6400 1.00 2586 133 0.1620 0.2077 REMARK 3 11 2.6400 - 2.5600 1.00 2570 146 0.1600 0.2034 REMARK 3 12 2.5600 - 2.4800 1.00 2613 117 0.1638 0.2028 REMARK 3 13 2.4800 - 2.4200 1.00 2572 145 0.1628 0.2396 REMARK 3 14 2.4200 - 2.3600 1.00 2551 159 0.1680 0.1830 REMARK 3 15 2.3600 - 2.3000 1.00 2607 127 0.1753 0.2343 REMARK 3 16 2.3000 - 2.2600 1.00 2545 140 0.1776 0.2271 REMARK 3 17 2.2600 - 2.2100 1.00 2541 176 0.1868 0.2565 REMARK 3 18 2.2100 - 2.1700 1.00 2583 122 0.1926 0.2361 REMARK 3 19 2.1700 - 2.1300 1.00 2603 142 0.1947 0.2191 REMARK 3 20 2.1300 - 2.0900 1.00 2600 132 0.1996 0.2143 REMARK 3 21 2.0900 - 2.0600 1.00 2507 166 0.2072 0.2378 REMARK 3 22 2.0600 - 2.0300 1.00 2593 122 0.2103 0.2930 REMARK 3 23 2.0300 - 2.0000 1.00 2569 149 0.2417 0.2734 REMARK 3 24 2.0000 - 1.9700 1.00 2544 138 0.2437 0.2718 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.195 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.508 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.36 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 4133 REMARK 3 ANGLE : 0.710 5642 REMARK 3 CHIRALITY : 0.046 630 REMARK 3 PLANARITY : 0.004 734 REMARK 3 DIHEDRAL : 18.428 1543 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -2 THROUGH 29 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.5297 -0.4449 21.9191 REMARK 3 T TENSOR REMARK 3 T11: 0.2179 T22: 0.2057 REMARK 3 T33: 0.2663 T12: -0.0022 REMARK 3 T13: -0.0093 T23: -0.0050 REMARK 3 L TENSOR REMARK 3 L11: 0.4924 L22: 0.7069 REMARK 3 L33: 1.6560 L12: -0.2693 REMARK 3 L13: -0.4807 L23: 0.8118 REMARK 3 S TENSOR REMARK 3 S11: 0.0131 S12: 0.0291 S13: -0.1204 REMARK 3 S21: -0.1409 S22: -0.0338 S23: -0.0446 REMARK 3 S31: 0.0538 S32: -0.0413 S33: 0.0264 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 30 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.8786 17.4797 18.6180 REMARK 3 T TENSOR REMARK 3 T11: 0.1672 T22: 0.1505 REMARK 3 T33: 0.1555 T12: 0.0141 REMARK 3 T13: -0.0028 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 0.7861 L22: 0.8479 REMARK 3 L33: 1.7322 L12: -0.1298 REMARK 3 L13: -0.1551 L23: 0.1943 REMARK 3 S TENSOR REMARK 3 S11: -0.0056 S12: 0.0534 S13: 0.0337 REMARK 3 S21: -0.0526 S22: 0.0220 S23: 0.0531 REMARK 3 S31: -0.1266 S32: -0.0890 S33: -0.0169 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 106 THROUGH 142 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.5633 20.9049 6.2247 REMARK 3 T TENSOR REMARK 3 T11: 0.2739 T22: 0.2103 REMARK 3 T33: 0.1777 T12: 0.0000 REMARK 3 T13: 0.0013 T23: 0.0410 REMARK 3 L TENSOR REMARK 3 L11: 1.6028 L22: 1.2155 REMARK 3 L33: 1.6657 L12: -0.2835 REMARK 3 L13: -0.2918 L23: 0.3201 REMARK 3 S TENSOR REMARK 3 S11: 0.0564 S12: 0.3289 S13: 0.1705 REMARK 3 S21: -0.3180 S22: 0.0298 S23: 0.0401 REMARK 3 S31: -0.2196 S32: -0.1236 S33: -0.0929 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 143 THROUGH 171 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.7514 16.0940 8.8680 REMARK 3 T TENSOR REMARK 3 T11: 0.2431 T22: 0.2398 REMARK 3 T33: 0.2036 T12: -0.0392 REMARK 3 T13: 0.0319 T23: 0.0160 REMARK 3 L TENSOR REMARK 3 L11: 1.5600 L22: 1.2289 REMARK 3 L33: 1.6813 L12: -0.2848 REMARK 3 L13: 0.3349 L23: 0.5430 REMARK 3 S TENSOR REMARK 3 S11: -0.0239 S12: 0.3154 S13: 0.1800 REMARK 3 S21: -0.2557 S22: 0.0686 S23: -0.0792 REMARK 3 S31: -0.1365 S32: 0.2427 S33: -0.0393 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 172 THROUGH 217 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.8261 0.1201 14.4613 REMARK 3 T TENSOR REMARK 3 T11: 0.2025 T22: 0.1900 REMARK 3 T33: 0.1877 T12: 0.0019 REMARK 3 T13: 0.0234 T23: -0.0334 REMARK 3 L TENSOR REMARK 3 L11: 1.3879 L22: 1.0273 REMARK 3 L33: 0.7217 L12: 0.4680 REMARK 3 L13: 0.2842 L23: -0.2341 REMARK 3 S TENSOR REMARK 3 S11: 0.0019 S12: 0.1597 S13: -0.2434 REMARK 3 S21: -0.1875 S22: 0.0420 S23: -0.1155 REMARK 3 S31: 0.1038 S32: 0.0517 S33: -0.0227 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 218 THROUGH 239 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.0284 10.9112 19.4647 REMARK 3 T TENSOR REMARK 3 T11: 0.1807 T22: 0.2219 REMARK 3 T33: 0.1777 T12: -0.0198 REMARK 3 T13: 0.0212 T23: -0.0207 REMARK 3 L TENSOR REMARK 3 L11: 1.0100 L22: 0.4944 REMARK 3 L33: 1.0094 L12: -0.1913 REMARK 3 L13: -0.7961 L23: -0.2085 REMARK 3 S TENSOR REMARK 3 S11: -0.0921 S12: 0.1009 S13: -0.0525 REMARK 3 S21: -0.0703 S22: 0.0366 S23: -0.1161 REMARK 3 S31: 0.0351 S32: 0.1344 S33: 0.0651 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID -2 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.8735 -5.2204 46.3065 REMARK 3 T TENSOR REMARK 3 T11: 0.2732 T22: 0.2764 REMARK 3 T33: 0.2800 T12: 0.0354 REMARK 3 T13: 0.0132 T23: 0.0351 REMARK 3 L TENSOR REMARK 3 L11: 0.3815 L22: 0.7231 REMARK 3 L33: 1.7002 L12: 0.1462 REMARK 3 L13: -0.8029 L23: -0.1685 REMARK 3 S TENSOR REMARK 3 S11: -0.0465 S12: -0.0737 S13: -0.1467 REMARK 3 S21: 0.1643 S22: 0.1200 S23: -0.0731 REMARK 3 S31: 0.2033 S32: 0.5336 S33: -0.1702 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 19 THROUGH 35 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.4112 -1.1003 26.3891 REMARK 3 T TENSOR REMARK 3 T11: 0.1704 T22: 0.1686 REMARK 3 T33: 0.1954 T12: 0.0240 REMARK 3 T13: -0.0114 T23: -0.0020 REMARK 3 L TENSOR REMARK 3 L11: 2.7351 L22: 1.3554 REMARK 3 L33: 1.3774 L12: 0.5884 REMARK 3 L13: 0.7452 L23: 0.5739 REMARK 3 S TENSOR REMARK 3 S11: 0.0959 S12: -0.1599 S13: -0.4083 REMARK 3 S21: -0.0240 S22: -0.0484 S23: -0.1628 REMARK 3 S31: 0.1695 S32: 0.0875 S33: -0.0182 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 36 THROUGH 92 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.3034 9.4061 36.9663 REMARK 3 T TENSOR REMARK 3 T11: 0.1400 T22: 0.1726 REMARK 3 T33: 0.1668 T12: -0.0026 REMARK 3 T13: 0.0109 T23: -0.0202 REMARK 3 L TENSOR REMARK 3 L11: 0.8826 L22: 1.0910 REMARK 3 L33: 1.7185 L12: -0.1689 REMARK 3 L13: 0.0733 L23: -0.0771 REMARK 3 S TENSOR REMARK 3 S11: -0.0103 S12: 0.0067 S13: -0.0302 REMARK 3 S21: 0.0316 S22: 0.0430 S23: -0.0412 REMARK 3 S31: 0.0418 S32: 0.0564 S33: -0.0347 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 93 THROUGH 157 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.8337 18.6701 44.9397 REMARK 3 T TENSOR REMARK 3 T11: 0.1853 T22: 0.1895 REMARK 3 T33: 0.2180 T12: -0.0250 REMARK 3 T13: -0.0095 T23: -0.0270 REMARK 3 L TENSOR REMARK 3 L11: 1.4106 L22: 0.7785 REMARK 3 L33: 1.5839 L12: -0.2555 REMARK 3 L13: 0.2280 L23: 0.2460 REMARK 3 S TENSOR REMARK 3 S11: -0.0096 S12: -0.1542 S13: 0.1478 REMARK 3 S21: 0.0864 S22: 0.0260 S23: -0.1482 REMARK 3 S31: -0.1750 S32: 0.1272 S33: -0.0228 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 158 THROUGH 184 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.2982 19.0041 43.3751 REMARK 3 T TENSOR REMARK 3 T11: 0.1651 T22: 0.1570 REMARK 3 T33: 0.1568 T12: 0.0042 REMARK 3 T13: 0.0045 T23: -0.0086 REMARK 3 L TENSOR REMARK 3 L11: 0.7741 L22: 0.8299 REMARK 3 L33: 0.9038 L12: 0.2239 REMARK 3 L13: -0.0817 L23: -0.1478 REMARK 3 S TENSOR REMARK 3 S11: -0.0091 S12: -0.1440 S13: 0.0051 REMARK 3 S21: 0.0895 S22: -0.0863 S23: 0.0187 REMARK 3 S31: -0.0990 S32: 0.0170 S33: 0.0893 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 185 THROUGH 216 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.0548 4.8816 46.0455 REMARK 3 T TENSOR REMARK 3 T11: 0.1742 T22: 0.1885 REMARK 3 T33: 0.1623 T12: -0.0042 REMARK 3 T13: 0.0040 T23: 0.0111 REMARK 3 L TENSOR REMARK 3 L11: 0.5233 L22: 2.1192 REMARK 3 L33: 1.3160 L12: 0.1192 REMARK 3 L13: -0.0851 L23: -0.6498 REMARK 3 S TENSOR REMARK 3 S11: 0.0102 S12: -0.1079 S13: -0.0366 REMARK 3 S21: 0.1751 S22: 0.1346 S23: 0.0431 REMARK 3 S31: 0.0681 S32: -0.0699 S33: -0.1076 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 217 THROUGH 239 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.7659 18.9766 35.5148 REMARK 3 T TENSOR REMARK 3 T11: 0.1951 T22: 0.1642 REMARK 3 T33: 0.1675 T12: 0.0020 REMARK 3 T13: 0.0133 T23: -0.0126 REMARK 3 L TENSOR REMARK 3 L11: 0.6214 L22: 1.1307 REMARK 3 L33: 0.4540 L12: -0.3278 REMARK 3 L13: -0.0772 L23: 0.5717 REMARK 3 S TENSOR REMARK 3 S11: -0.0536 S12: -0.0782 S13: 0.0183 REMARK 3 S21: -0.0301 S22: 0.0318 S23: -0.1056 REMARK 3 S31: -0.0345 S32: -0.0170 S33: 0.0036 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8XDS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-DEC-23. REMARK 100 THE DEPOSITION ID IS D_1300043260. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-DEC-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.04500 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65158 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 47.860 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 11.80 REMARK 200 R MERGE (I) : 0.18400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 12.10 REMARK 200 R MERGE FOR SHELL (I) : 1.19200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24% (W/V) PEG 8000, 0.2M MGCL2, 0.1M REMARK 280 TRIS-HCL (PH 8.0), VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.61450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.23400 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.61450 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 59.23400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 19 CG CD OE1 OE2 REMARK 470 GLU A 36 CD OE1 OE2 REMARK 470 LYS A 73 CD CE NZ REMARK 470 LYS A 144 CG CD CE NZ REMARK 470 LYS A 213 NZ REMARK 470 GLU B 36 CD OE1 OE2 REMARK 470 LYS B 73 CD CE NZ REMARK 470 LYS B 144 CG CD CE NZ REMARK 470 GLU B 146 CG CD OE1 OE2 REMARK 470 GLU B 193 CG CD OE1 OE2 REMARK 470 LYS B 213 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 793 O HOH A 800 2.09 REMARK 500 O HOH B 580 O HOH B 586 2.14 REMARK 500 O HOH B 432 O HOH B 541 2.15 REMARK 500 O HOH B 441 O HOH B 606 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 692 O HOH B 401 3555 2.17 REMARK 500 O HOH A 612 O HOH A 662 3555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 30 -63.76 -120.72 REMARK 500 TYR A 81 -129.94 56.11 REMARK 500 ASP A 155 25.73 -149.67 REMARK 500 ALA A 156 -117.91 -97.75 REMARK 500 TYR A 186 16.52 59.92 REMARK 500 TYR B 81 -128.27 55.09 REMARK 500 ASP B 155 32.43 -146.87 REMARK 500 ALA B 156 -126.68 -103.60 REMARK 500 TRP B 185 63.36 39.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 155 OD1 REMARK 620 2 ASP A 181 OD2 93.1 REMARK 620 3 ASN A 182 OD1 94.0 94.2 REMARK 620 4 HOH A 610 O 96.8 92.3 167.1 REMARK 620 5 HOH A 688 O 179.4 86.4 86.3 83.0 REMARK 620 6 HOH A 712 O 94.4 172.5 84.7 87.4 86.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 155 OD1 REMARK 620 2 ASP B 181 OD2 87.2 REMARK 620 3 ASN B 182 OD1 90.7 90.2 REMARK 620 4 HOH B 403 O 90.4 92.7 177.0 REMARK 620 5 HOH B 500 O 176.2 92.6 93.1 85.8 REMARK 620 6 HOH B 525 O 91.6 177.2 92.3 84.8 88.3 REMARK 620 N 1 2 3 4 5 DBREF1 8XDS A 1 239 UNP A0A6B9TNK2_9ASPA DBREF2 8XDS A A0A6B9TNK2 1 239 DBREF1 8XDS B 1 239 UNP A0A6B9TNK2_9ASPA DBREF2 8XDS B A0A6B9TNK2 1 239 SEQADV 8XDS GLY A -2 UNP A0A6B9TNK EXPRESSION TAG SEQADV 8XDS PRO A -1 UNP A0A6B9TNK EXPRESSION TAG SEQADV 8XDS GLY A 0 UNP A0A6B9TNK EXPRESSION TAG SEQADV 8XDS TYR A 186 UNP A0A6B9TNK PHE 186 ENGINEERED MUTATION SEQADV 8XDS GLY B -2 UNP A0A6B9TNK EXPRESSION TAG SEQADV 8XDS PRO B -1 UNP A0A6B9TNK EXPRESSION TAG SEQADV 8XDS GLY B 0 UNP A0A6B9TNK EXPRESSION TAG SEQADV 8XDS TYR B 186 UNP A0A6B9TNK PHE 186 ENGINEERED MUTATION SEQRES 1 A 242 GLY PRO GLY MET GLY ALA SER GLN ASP ASP TYR ALA LEU SEQRES 2 A 242 ILE HIS LYS ASN ILE LEU HIS SER GLU ASP LEU LEU LYS SEQRES 3 A 242 TYR ILE LEU GLU THR SER VAL TYR PRO ARG GLU HIS GLU SEQRES 4 A 242 GLN LEU LYS GLY LEU ARG GLU VAL THR GLU LYS HIS GLU SEQRES 5 A 242 TRP SER MET ALA LEU VAL ALA ALA ASP GLU GLY LEU PHE SEQRES 6 A 242 LEU SER MET LEU LEU LYS LEU MET ASN ALA LYS ARG THR SEQRES 7 A 242 ILE GLU ILE GLY VAL TYR THR GLY TYR SER LEU LEU THR SEQRES 8 A 242 THR ALA LEU ALA LEU PRO GLU ASP GLY LYS ILE THR ALA SEQRES 9 A 242 ILE ASP VAL ASN LYS SER TYR PHE GLU ILE GLY LEU PRO SEQRES 10 A 242 PHE ILE GLN LYS ALA GLY VAL GLU HIS LYS ILE ASN PHE SEQRES 11 A 242 ILE GLU SER GLU ALA LEU PRO VAL LEU ASP GLN MET LEU SEQRES 12 A 242 GLN GLU MET LYS GLU GLU ASP LEU TYR ASP PHE ALA PHE SEQRES 13 A 242 VAL ASP ALA ASP LYS PRO ASN TYR ALA ASN TYR HIS GLU SEQRES 14 A 242 ARG LEU VAL LYS LEU VAL ARG VAL GLY GLY ALA ILE VAL SEQRES 15 A 242 TYR ASP ASN THR LEU TRP TYR GLY THR VAL ALA PHE PRO SEQRES 16 A 242 GLU TYR PRO GLY LEU HIS PRO GLU GLU GLU GLU CYS ARG SEQRES 17 A 242 VAL SER PHE ARG ASN LEU ASN LYS LEU LEU ALA ALA ASP SEQRES 18 A 242 PRO ARG VAL GLU ILE SER GLN VAL SER ILE GLY ASP GLY SEQRES 19 A 242 LEU THR ILE CYS ARG ARG LEU TYR SEQRES 1 B 242 GLY PRO GLY MET GLY ALA SER GLN ASP ASP TYR ALA LEU SEQRES 2 B 242 ILE HIS LYS ASN ILE LEU HIS SER GLU ASP LEU LEU LYS SEQRES 3 B 242 TYR ILE LEU GLU THR SER VAL TYR PRO ARG GLU HIS GLU SEQRES 4 B 242 GLN LEU LYS GLY LEU ARG GLU VAL THR GLU LYS HIS GLU SEQRES 5 B 242 TRP SER MET ALA LEU VAL ALA ALA ASP GLU GLY LEU PHE SEQRES 6 B 242 LEU SER MET LEU LEU LYS LEU MET ASN ALA LYS ARG THR SEQRES 7 B 242 ILE GLU ILE GLY VAL TYR THR GLY TYR SER LEU LEU THR SEQRES 8 B 242 THR ALA LEU ALA LEU PRO GLU ASP GLY LYS ILE THR ALA SEQRES 9 B 242 ILE ASP VAL ASN LYS SER TYR PHE GLU ILE GLY LEU PRO SEQRES 10 B 242 PHE ILE GLN LYS ALA GLY VAL GLU HIS LYS ILE ASN PHE SEQRES 11 B 242 ILE GLU SER GLU ALA LEU PRO VAL LEU ASP GLN MET LEU SEQRES 12 B 242 GLN GLU MET LYS GLU GLU ASP LEU TYR ASP PHE ALA PHE SEQRES 13 B 242 VAL ASP ALA ASP LYS PRO ASN TYR ALA ASN TYR HIS GLU SEQRES 14 B 242 ARG LEU VAL LYS LEU VAL ARG VAL GLY GLY ALA ILE VAL SEQRES 15 B 242 TYR ASP ASN THR LEU TRP TYR GLY THR VAL ALA PHE PRO SEQRES 16 B 242 GLU TYR PRO GLY LEU HIS PRO GLU GLU GLU GLU CYS ARG SEQRES 17 B 242 VAL SER PHE ARG ASN LEU ASN LYS LEU LEU ALA ALA ASP SEQRES 18 B 242 PRO ARG VAL GLU ILE SER GLN VAL SER ILE GLY ASP GLY SEQRES 19 B 242 LEU THR ILE CYS ARG ARG LEU TYR HET GOL A 501 6 HET MG A 502 1 HET SAH A 503 26 HET MG B 301 1 HET SAH B 302 26 HETNAM GOL GLYCEROL HETNAM MG MAGNESIUM ION HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL C3 H8 O3 FORMUL 4 MG 2(MG 2+) FORMUL 5 SAH 2(C14 H20 N6 O5 S) FORMUL 8 HOH *449(H2 O) HELIX 1 AA1 SER A 4 TYR A 8 5 5 HELIX 2 AA2 SER A 18 VAL A 30 1 13 HELIX 3 AA3 TYR A 31 GLU A 34 5 4 HELIX 4 AA4 HIS A 35 LYS A 47 1 13 HELIX 5 AA5 TRP A 50 LEU A 54 5 5 HELIX 6 AA6 ALA A 56 MET A 70 1 15 HELIX 7 AA7 GLY A 83 LEU A 93 1 11 HELIX 8 AA8 ASN A 105 ALA A 119 1 15 HELIX 9 AA9 VAL A 121 HIS A 123 5 3 HELIX 10 AB1 GLU A 131 MET A 143 1 13 HELIX 11 AB2 LYS A 144 LEU A 148 5 5 HELIX 12 AB3 ASP A 157 PRO A 159 5 3 HELIX 13 AB4 ASN A 160 LEU A 171 1 12 HELIX 14 AB5 LEU A 184 PHE A 191 5 8 HELIX 15 AB6 HIS A 198 ASP A 218 1 21 HELIX 16 AB7 SER B 4 TYR B 8 5 5 HELIX 17 AB8 SER B 18 VAL B 30 1 13 HELIX 18 AB9 TYR B 31 GLU B 34 5 4 HELIX 19 AC1 HIS B 35 GLU B 46 1 12 HELIX 20 AC2 TRP B 50 LEU B 54 5 5 HELIX 21 AC3 ALA B 56 MET B 70 1 15 HELIX 22 AC4 GLY B 83 LEU B 93 1 11 HELIX 23 AC5 ASN B 105 ALA B 119 1 15 HELIX 24 AC6 VAL B 121 HIS B 123 5 3 HELIX 25 AC7 GLU B 131 MET B 143 1 13 HELIX 26 AC8 LYS B 144 LEU B 148 5 5 HELIX 27 AC9 ASP B 157 PRO B 159 5 3 HELIX 28 AD1 ASN B 160 LEU B 171 1 12 HELIX 29 AD2 LEU B 184 PHE B 191 5 8 HELIX 30 AD3 HIS B 198 ASP B 218 1 21 SHEET 1 AA1 7 ILE A 125 GLU A 129 0 SHEET 2 AA1 7 LYS A 98 ASP A 103 1 N ALA A 101 O ILE A 128 SHEET 3 AA1 7 ARG A 74 ILE A 78 1 N GLU A 77 O THR A 100 SHEET 4 AA1 7 TYR A 149 VAL A 154 1 O ASP A 150 N ARG A 74 SHEET 5 AA1 7 VAL A 172 ASP A 181 1 O VAL A 179 N VAL A 154 SHEET 6 AA1 7 LEU A 232 ARG A 237 -1 O ARG A 237 N GLY A 175 SHEET 7 AA1 7 VAL A 221 VAL A 226 -1 N VAL A 226 O LEU A 232 SHEET 1 AA2 7 ILE B 125 GLU B 129 0 SHEET 2 AA2 7 LYS B 98 ASP B 103 1 N ALA B 101 O ILE B 128 SHEET 3 AA2 7 ARG B 74 ILE B 78 1 N GLU B 77 O THR B 100 SHEET 4 AA2 7 TYR B 149 VAL B 154 1 O ASP B 150 N ARG B 74 SHEET 5 AA2 7 VAL B 172 ASP B 181 1 O VAL B 179 N VAL B 154 SHEET 6 AA2 7 LEU B 232 ARG B 237 -1 O CYS B 235 N ILE B 178 SHEET 7 AA2 7 VAL B 221 VAL B 226 -1 N VAL B 226 O LEU B 232 LINK OD1 ASP A 155 MG MG A 502 1555 1555 2.12 LINK OD2 ASP A 181 MG MG A 502 1555 1555 2.02 LINK OD1 ASN A 182 MG MG A 502 1555 1555 2.16 LINK MG MG A 502 O HOH A 610 1555 1555 2.10 LINK MG MG A 502 O HOH A 688 1555 1555 2.11 LINK MG MG A 502 O HOH A 712 1555 1555 2.11 LINK OD1 ASP B 155 MG MG B 301 1555 1555 2.24 LINK OD2 ASP B 181 MG MG B 301 1555 1555 1.99 LINK OD1 ASN B 182 MG MG B 301 1555 1555 2.10 LINK MG MG B 301 O HOH B 403 1555 1555 2.19 LINK MG MG B 301 O HOH B 500 1555 1555 2.08 LINK MG MG B 301 O HOH B 525 1555 1555 2.12 CRYST1 49.490 81.229 118.468 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020206 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012311 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008441 0.00000