HEADER PROTEIN BINDING 11-DEC-23 8XE8 TITLE SOLUTION STRUCTURE OF UBIQUITIN-LIKE DOMAIN (UBL) OF HUMAN ZFAND1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: AN1-TYPE ZINC FINGER PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ZINC FINGER AN1-TYPE-CONTAINING PROTEIN 1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ZFAND1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS UBIQUITIN-LIKE DOMAIN, UBL, HUMAN ZFAND1, PROTEASOME, STRESS GRANULE, KEYWDS 2 PROTEOSTASIS, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.H.LAI,K.T.KO,P.J.FAN,T.A.YU,C.F.CHANG,S.T.D.HSU REVDAT 1 20-NOV-24 8XE8 0 JRNL AUTH C.H.LAI,K.T.KO,P.J.FAN,T.A.YU,C.F.CHANG,P.DRACZKOWSKI, JRNL AUTH 2 S.D.HSU JRNL TITL STRUCTURAL INSIGHT INTO THE ZFAND1-P97 INTERACTION INVOLVED JRNL TITL 2 IN STRESS GRANULE CLEARANCE. JRNL REF J.BIOL.CHEM. V. 300 07230 2024 JRNL REFN ESSN 1083-351X JRNL PMID 38537699 JRNL DOI 10.1016/J.JBC.2024.107230 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3.98.13 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8XE8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-DEC-23. REMARK 100 THE DEPOSITION ID IS D_1300043189. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300; 300 REMARK 210 PH : 7.1; 6.5 REMARK 210 IONIC STRENGTH : 150; 150 REMARK 210 PRESSURE : 1 ATM; 1 ATM REMARK 210 SAMPLE CONTENTS : 0.4 MM [U-13C; U-15N] UBL REMARK 210 PRTOEIN, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 HNCO; 3D HBHA(CO)NH; 3D CCH- REMARK 210 TOCSY; 3D HCCH-TOCSY; 3D C(CO)NH; REMARK 210 3D 1H-13C NOESY AROMATIC; 3D REMARK 210 H(CCO)NH; 3D 13C/15N REMARK 210 SIMULTANEOUS NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 850 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CARA, NMRFAM-SPARKY REMARK 210 METHOD USED : NA REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 134 96.40 -175.50 REMARK 500 1 ASP A 153 95.88 -61.06 REMARK 500 1 SER A 174 -70.60 -74.30 REMARK 500 1 ARG A 186 47.02 -90.40 REMARK 500 1 ASN A 204 140.40 -174.41 REMARK 500 1 ALA A 211 142.07 -177.89 REMARK 500 1 SER A 221 -52.93 -144.00 REMARK 500 1 LYS A 261 177.35 -57.98 REMARK 500 2 ALA A 134 92.11 -173.62 REMARK 500 2 LYS A 135 107.51 -54.81 REMARK 500 2 ASP A 153 103.06 -59.63 REMARK 500 2 GLN A 160 36.70 -98.52 REMARK 500 2 PRO A 171 89.83 -69.77 REMARK 500 2 ARG A 186 47.73 -88.04 REMARK 500 2 ALA A 211 131.59 -177.79 REMARK 500 2 SER A 221 -53.13 -153.18 REMARK 500 2 CYS A 240 67.30 31.47 REMARK 500 3 ALA A 134 65.02 -152.24 REMARK 500 3 ASN A 136 -176.00 -69.42 REMARK 500 3 ALA A 152 153.24 -48.74 REMARK 500 3 PRO A 159 82.04 -69.77 REMARK 500 3 LYS A 203 103.52 -52.00 REMARK 500 3 ASN A 207 97.56 -179.05 REMARK 500 3 SER A 221 -53.01 -153.58 REMARK 500 4 ALA A 134 -58.20 -172.51 REMARK 500 4 PRO A 159 -178.25 -69.73 REMARK 500 4 PHE A 209 -68.36 -103.39 REMARK 500 4 SER A 221 -54.62 -157.19 REMARK 500 4 LYS A 261 -178.78 -58.41 REMARK 500 5 ALA A 134 98.26 -178.33 REMARK 500 5 SER A 137 -74.55 -115.93 REMARK 500 5 GLN A 160 39.60 -94.11 REMARK 500 5 PRO A 171 -170.21 -69.82 REMARK 500 5 SER A 174 102.88 -179.59 REMARK 500 5 ASN A 204 113.24 -172.29 REMARK 500 5 ASP A 205 36.08 -95.46 REMARK 500 5 PHE A 209 59.10 -96.10 REMARK 500 5 THR A 210 38.71 -155.69 REMARK 500 5 SER A 221 -52.86 -159.15 REMARK 500 5 ASP A 239 173.30 -54.97 REMARK 500 5 CYS A 240 68.45 -118.11 REMARK 500 5 PRO A 241 -171.70 -69.71 REMARK 500 6 ALA A 134 -49.30 -154.77 REMARK 500 6 ALA A 152 153.07 -47.35 REMARK 500 6 PRO A 171 -170.31 -69.70 REMARK 500 6 SER A 174 105.15 179.90 REMARK 500 6 ARG A 186 47.11 -89.46 REMARK 500 6 PHE A 209 28.84 49.29 REMARK 500 6 THR A 210 83.52 65.30 REMARK 500 6 SER A 221 -52.75 -144.00 REMARK 500 REMARK 500 THIS ENTRY HAS 177 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7Y39 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF ZFAND1 UBL REMARK 900 RELATED ID: 36622 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF UBIQUITIN-LIKE DOMAIN (UBL) OF HUMAN ZFAND1 DBREF 8XE8 A 133 268 UNP Q8TCF1 ZFAN1_HUMAN 133 268 SEQADV 8XE8 GLY A 130 UNP Q8TCF1 EXPRESSION TAG SEQADV 8XE8 GLY A 131 UNP Q8TCF1 EXPRESSION TAG SEQADV 8XE8 SER A 132 UNP Q8TCF1 EXPRESSION TAG SEQRES 1 A 139 GLY GLY SER GLY ALA LYS ASN SER GLU THR ALA ALA LYS SEQRES 2 A 139 VAL ALA LEU MET LYS LEU LYS MET HIS ALA ASP GLY ASP SEQRES 3 A 139 LYS SER LEU PRO GLN THR GLU ARG ILE TYR PHE GLN VAL SEQRES 4 A 139 PHE LEU PRO LYS GLY SER LYS GLU LYS SER LYS PRO MET SEQRES 5 A 139 PHE PHE CYS HIS ARG TRP SER ILE GLY LYS ALA ILE ASP SEQRES 6 A 139 PHE ALA ALA SER LEU ALA ARG LEU LYS ASN ASP ASN ASN SEQRES 7 A 139 LYS PHE THR ALA LYS LYS LEU ARG LEU CYS HIS ILE THR SEQRES 8 A 139 SER GLY GLU ALA LEU PRO LEU ASP HIS THR LEU GLU THR SEQRES 9 A 139 TRP ILE ALA LYS GLU ASP CYS PRO LEU TYR ASN GLY GLY SEQRES 10 A 139 ASN ILE ILE LEU GLU TYR LEU ASN ASP GLU GLU GLN PHE SEQRES 11 A 139 CYS LYS ASN VAL GLU SER TYR LEU GLU HELIX 1 AA1 SER A 137 ALA A 152 1 16 HELIX 2 AA2 SER A 188 ALA A 200 1 13 HELIX 3 AA3 THR A 230 LYS A 237 1 8 HELIX 4 AA4 ASN A 262 LEU A 267 1 6 SHEET 1 AA1 4 SER A 178 CYS A 184 0 SHEET 2 AA1 4 ARG A 163 PHE A 169 -1 N PHE A 166 O MET A 181 SHEET 3 AA1 4 ASN A 247 TYR A 252 1 O ILE A 248 N GLN A 167 SHEET 4 AA1 4 LEU A 214 CYS A 217 -1 N ARG A 215 O GLU A 251 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 ENDMDL MODEL 2 ENDMDL MODEL 3 ENDMDL MODEL 4 ENDMDL MODEL 5 ENDMDL MODEL 6 ENDMDL MODEL 7 ENDMDL MODEL 8 ENDMDL MODEL 9 ENDMDL MODEL 10 ENDMDL MODEL 11 ENDMDL MODEL 12 ENDMDL MODEL 13 ENDMDL MODEL 14 ENDMDL MODEL 15 ENDMDL MODEL 16 ENDMDL MODEL 17 ENDMDL MODEL 18 ENDMDL MODEL 19 ENDMDL MODEL 20 ENDMDL MASTER 148 0 0 4 4 0 0 6 1099 1 0 11 END