data_8XH6 # _entry.id 8XH6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.395 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8XH6 pdb_00008xh6 10.2210/pdb8xh6/pdb WWPDB D_1300043504 ? ? EMDB EMD-38342 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2024-06-26 2 'Structure model' 1 1 2024-07-31 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 2 'Structure model' em_admin # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_abbrev' 2 2 'Structure model' '_citation.journal_id_CSD' 3 2 'Structure model' '_citation.journal_id_ISSN' 4 2 'Structure model' '_citation.pdbx_database_id_DOI' 5 2 'Structure model' '_citation.pdbx_database_id_PubMed' 6 2 'Structure model' '_citation.title' 7 2 'Structure model' '_citation.year' 8 2 'Structure model' '_em_admin.last_update' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8XH6 _pdbx_database_status.recvd_initial_deposition_date 2023-12-17 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Structure of EBV LMP1 dimer' _pdbx_database_related.db_id EMD-38342 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 2 _pdbx_contact_author.email gaopu@ibp.ac.cn _pdbx_contact_author.name_first Pu _pdbx_contact_author.name_last Gao _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-5328-9755 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Gao, P.' 1 ? 'Huang, J.F.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Cell _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1097-4172 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Assembly and activation of EBV latent membrane protein 1.' _citation.year 2024 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1016/j.cell.2024.06.021 _citation.pdbx_database_id_PubMed 38996527 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Huang, J.' 1 ? primary 'Zhang, X.' 2 ? primary 'Nie, X.' 3 ? primary 'Zhang, X.' 4 ? primary 'Wang, Y.' 5 ? primary 'Huang, L.' 6 ? primary 'Geng, X.' 7 ? primary 'Li, D.' 8 ? primary 'Zhang, L.' 9 ? primary 'Gao, G.' 10 ? primary 'Gao, P.' 11 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Latent membrane protein 1' _entity.formula_weight 18729.418 _entity.pdbx_number_of_molecules 2 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Protein p63' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SIGLALLLLLLALLFWLYIVMSNWTGGALLVLYSFALMLIIIILIIFIFRRDLLCPLGGLGLLLLMITLLLIALWNLHGQ ALYLGIVLFIFGCLLVLGLWIYFLEILWRLGATIWQLLAFILAFFLAIILLIIALYLQQNWWTLLVDLLWLLLFMAILIW MY ; _entity_poly.pdbx_seq_one_letter_code_can ;SIGLALLLLLLALLFWLYIVMSNWTGGALLVLYSFALMLIIIILIIFIFRRDLLCPLGGLGLLLLMITLLLIALWNLHGQ ALYLGIVLFIFGCLLVLGLWIYFLEILWRLGATIWQLLAFILAFFLAIILLIIALYLQQNWWTLLVDLLWLLLFMAILIW MY ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ILE n 1 3 GLY n 1 4 LEU n 1 5 ALA n 1 6 LEU n 1 7 LEU n 1 8 LEU n 1 9 LEU n 1 10 LEU n 1 11 LEU n 1 12 ALA n 1 13 LEU n 1 14 LEU n 1 15 PHE n 1 16 TRP n 1 17 LEU n 1 18 TYR n 1 19 ILE n 1 20 VAL n 1 21 MET n 1 22 SER n 1 23 ASN n 1 24 TRP n 1 25 THR n 1 26 GLY n 1 27 GLY n 1 28 ALA n 1 29 LEU n 1 30 LEU n 1 31 VAL n 1 32 LEU n 1 33 TYR n 1 34 SER n 1 35 PHE n 1 36 ALA n 1 37 LEU n 1 38 MET n 1 39 LEU n 1 40 ILE n 1 41 ILE n 1 42 ILE n 1 43 ILE n 1 44 LEU n 1 45 ILE n 1 46 ILE n 1 47 PHE n 1 48 ILE n 1 49 PHE n 1 50 ARG n 1 51 ARG n 1 52 ASP n 1 53 LEU n 1 54 LEU n 1 55 CYS n 1 56 PRO n 1 57 LEU n 1 58 GLY n 1 59 GLY n 1 60 LEU n 1 61 GLY n 1 62 LEU n 1 63 LEU n 1 64 LEU n 1 65 LEU n 1 66 MET n 1 67 ILE n 1 68 THR n 1 69 LEU n 1 70 LEU n 1 71 LEU n 1 72 ILE n 1 73 ALA n 1 74 LEU n 1 75 TRP n 1 76 ASN n 1 77 LEU n 1 78 HIS n 1 79 GLY n 1 80 GLN n 1 81 ALA n 1 82 LEU n 1 83 TYR n 1 84 LEU n 1 85 GLY n 1 86 ILE n 1 87 VAL n 1 88 LEU n 1 89 PHE n 1 90 ILE n 1 91 PHE n 1 92 GLY n 1 93 CYS n 1 94 LEU n 1 95 LEU n 1 96 VAL n 1 97 LEU n 1 98 GLY n 1 99 LEU n 1 100 TRP n 1 101 ILE n 1 102 TYR n 1 103 PHE n 1 104 LEU n 1 105 GLU n 1 106 ILE n 1 107 LEU n 1 108 TRP n 1 109 ARG n 1 110 LEU n 1 111 GLY n 1 112 ALA n 1 113 THR n 1 114 ILE n 1 115 TRP n 1 116 GLN n 1 117 LEU n 1 118 LEU n 1 119 ALA n 1 120 PHE n 1 121 ILE n 1 122 LEU n 1 123 ALA n 1 124 PHE n 1 125 PHE n 1 126 LEU n 1 127 ALA n 1 128 ILE n 1 129 ILE n 1 130 LEU n 1 131 LEU n 1 132 ILE n 1 133 ILE n 1 134 ALA n 1 135 LEU n 1 136 TYR n 1 137 LEU n 1 138 GLN n 1 139 GLN n 1 140 ASN n 1 141 TRP n 1 142 TRP n 1 143 THR n 1 144 LEU n 1 145 LEU n 1 146 VAL n 1 147 ASP n 1 148 LEU n 1 149 LEU n 1 150 TRP n 1 151 LEU n 1 152 LEU n 1 153 LEU n 1 154 PHE n 1 155 MET n 1 156 ALA n 1 157 ILE n 1 158 LEU n 1 159 ILE n 1 160 TRP n 1 161 MET n 1 162 TYR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 162 _entity_src_gen.gene_src_common_name 'HHV-4, Human herpesvirus 4' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'LMP1, LMP-1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'human gammaherpesvirus 4' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10376 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 24 24 SER SER A . n A 1 2 ILE 2 25 25 ILE ILE A . n A 1 3 GLY 3 26 26 GLY GLY A . n A 1 4 LEU 4 27 27 LEU LEU A . n A 1 5 ALA 5 28 28 ALA ALA A . n A 1 6 LEU 6 29 29 LEU LEU A . n A 1 7 LEU 7 30 30 LEU LEU A . n A 1 8 LEU 8 31 31 LEU LEU A . n A 1 9 LEU 9 32 32 LEU LEU A . n A 1 10 LEU 10 33 33 LEU LEU A . n A 1 11 LEU 11 34 34 LEU LEU A . n A 1 12 ALA 12 35 35 ALA ALA A . n A 1 13 LEU 13 36 36 LEU LEU A . n A 1 14 LEU 14 37 37 LEU LEU A . n A 1 15 PHE 15 38 38 PHE PHE A . n A 1 16 TRP 16 39 39 TRP TRP A . n A 1 17 LEU 17 40 40 LEU LEU A . n A 1 18 TYR 18 41 41 TYR TYR A . n A 1 19 ILE 19 42 42 ILE ILE A . n A 1 20 VAL 20 43 43 VAL VAL A . n A 1 21 MET 21 44 44 MET MET A . n A 1 22 SER 22 45 45 SER SER A . n A 1 23 ASN 23 46 46 ASN ASN A . n A 1 24 TRP 24 47 47 TRP TRP A . n A 1 25 THR 25 48 48 THR THR A . n A 1 26 GLY 26 49 49 GLY GLY A . n A 1 27 GLY 27 50 50 GLY GLY A . n A 1 28 ALA 28 51 51 ALA ALA A . n A 1 29 LEU 29 52 52 LEU LEU A . n A 1 30 LEU 30 53 53 LEU LEU A . n A 1 31 VAL 31 54 54 VAL VAL A . n A 1 32 LEU 32 55 55 LEU LEU A . n A 1 33 TYR 33 56 56 TYR TYR A . n A 1 34 SER 34 57 57 SER SER A . n A 1 35 PHE 35 58 58 PHE PHE A . n A 1 36 ALA 36 59 59 ALA ALA A . n A 1 37 LEU 37 60 60 LEU LEU A . n A 1 38 MET 38 61 61 MET MET A . n A 1 39 LEU 39 62 62 LEU LEU A . n A 1 40 ILE 40 63 63 ILE ILE A . n A 1 41 ILE 41 64 64 ILE ILE A . n A 1 42 ILE 42 65 65 ILE ILE A . n A 1 43 ILE 43 66 66 ILE ILE A . n A 1 44 LEU 44 67 67 LEU LEU A . n A 1 45 ILE 45 68 68 ILE ILE A . n A 1 46 ILE 46 69 69 ILE ILE A . n A 1 47 PHE 47 70 70 PHE PHE A . n A 1 48 ILE 48 71 71 ILE ILE A . n A 1 49 PHE 49 72 72 PHE PHE A . n A 1 50 ARG 50 73 73 ARG ARG A . n A 1 51 ARG 51 74 74 ARG ARG A . n A 1 52 ASP 52 75 75 ASP ASP A . n A 1 53 LEU 53 76 76 LEU LEU A . n A 1 54 LEU 54 77 77 LEU LEU A . n A 1 55 CYS 55 78 78 CYS CYS A . n A 1 56 PRO 56 79 79 PRO PRO A . n A 1 57 LEU 57 80 80 LEU LEU A . n A 1 58 GLY 58 81 81 GLY GLY A . n A 1 59 GLY 59 82 82 GLY GLY A . n A 1 60 LEU 60 83 83 LEU LEU A . n A 1 61 GLY 61 84 84 GLY GLY A . n A 1 62 LEU 62 85 85 LEU LEU A . n A 1 63 LEU 63 86 86 LEU LEU A . n A 1 64 LEU 64 87 87 LEU LEU A . n A 1 65 LEU 65 88 88 LEU LEU A . n A 1 66 MET 66 89 89 MET MET A . n A 1 67 ILE 67 90 90 ILE ILE A . n A 1 68 THR 68 91 91 THR THR A . n A 1 69 LEU 69 92 92 LEU LEU A . n A 1 70 LEU 70 93 93 LEU LEU A . n A 1 71 LEU 71 94 94 LEU LEU A . n A 1 72 ILE 72 95 95 ILE ILE A . n A 1 73 ALA 73 96 96 ALA ALA A . n A 1 74 LEU 74 97 97 LEU LEU A . n A 1 75 TRP 75 98 98 TRP TRP A . n A 1 76 ASN 76 99 99 ASN ASN A . n A 1 77 LEU 77 100 100 LEU LEU A . n A 1 78 HIS 78 101 101 HIS HIS A . n A 1 79 GLY 79 102 102 GLY GLY A . n A 1 80 GLN 80 103 103 GLN GLN A . n A 1 81 ALA 81 104 104 ALA ALA A . n A 1 82 LEU 82 105 105 LEU LEU A . n A 1 83 TYR 83 106 106 TYR TYR A . n A 1 84 LEU 84 107 107 LEU LEU A . n A 1 85 GLY 85 108 108 GLY GLY A . n A 1 86 ILE 86 109 109 ILE ILE A . n A 1 87 VAL 87 110 110 VAL VAL A . n A 1 88 LEU 88 111 111 LEU LEU A . n A 1 89 PHE 89 112 112 PHE PHE A . n A 1 90 ILE 90 113 113 ILE ILE A . n A 1 91 PHE 91 114 114 PHE PHE A . n A 1 92 GLY 92 115 115 GLY GLY A . n A 1 93 CYS 93 116 116 CYS CYS A . n A 1 94 LEU 94 117 117 LEU LEU A . n A 1 95 LEU 95 118 118 LEU LEU A . n A 1 96 VAL 96 119 119 VAL VAL A . n A 1 97 LEU 97 120 120 LEU LEU A . n A 1 98 GLY 98 121 121 GLY GLY A . n A 1 99 LEU 99 122 122 LEU LEU A . n A 1 100 TRP 100 123 123 TRP TRP A . n A 1 101 ILE 101 124 124 ILE ILE A . n A 1 102 TYR 102 125 125 TYR TYR A . n A 1 103 PHE 103 126 126 PHE PHE A . n A 1 104 LEU 104 127 127 LEU LEU A . n A 1 105 GLU 105 128 128 GLU GLU A . n A 1 106 ILE 106 129 129 ILE ILE A . n A 1 107 LEU 107 130 130 LEU LEU A . n A 1 108 TRP 108 131 131 TRP TRP A . n A 1 109 ARG 109 132 132 ARG ARG A . n A 1 110 LEU 110 133 133 LEU LEU A . n A 1 111 GLY 111 134 134 GLY GLY A . n A 1 112 ALA 112 135 135 ALA ALA A . n A 1 113 THR 113 136 136 THR THR A . n A 1 114 ILE 114 137 137 ILE ILE A . n A 1 115 TRP 115 138 138 TRP TRP A . n A 1 116 GLN 116 139 139 GLN GLN A . n A 1 117 LEU 117 140 140 LEU LEU A . n A 1 118 LEU 118 141 141 LEU LEU A . n A 1 119 ALA 119 142 142 ALA ALA A . n A 1 120 PHE 120 143 143 PHE PHE A . n A 1 121 ILE 121 144 144 ILE ILE A . n A 1 122 LEU 122 145 145 LEU LEU A . n A 1 123 ALA 123 146 146 ALA ALA A . n A 1 124 PHE 124 147 147 PHE PHE A . n A 1 125 PHE 125 148 148 PHE PHE A . n A 1 126 LEU 126 149 149 LEU LEU A . n A 1 127 ALA 127 150 150 ALA ALA A . n A 1 128 ILE 128 151 151 ILE ILE A . n A 1 129 ILE 129 152 152 ILE ILE A . n A 1 130 LEU 130 153 153 LEU LEU A . n A 1 131 LEU 131 154 154 LEU LEU A . n A 1 132 ILE 132 155 155 ILE ILE A . n A 1 133 ILE 133 156 156 ILE ILE A . n A 1 134 ALA 134 157 157 ALA ALA A . n A 1 135 LEU 135 158 158 LEU LEU A . n A 1 136 TYR 136 159 159 TYR TYR A . n A 1 137 LEU 137 160 160 LEU LEU A . n A 1 138 GLN 138 161 161 GLN GLN A . n A 1 139 GLN 139 162 162 GLN GLN A . n A 1 140 ASN 140 163 163 ASN ASN A . n A 1 141 TRP 141 164 164 TRP TRP A . n A 1 142 TRP 142 165 165 TRP TRP A . n A 1 143 THR 143 166 166 THR THR A . n A 1 144 LEU 144 167 167 LEU LEU A . n A 1 145 LEU 145 168 168 LEU LEU A . n A 1 146 VAL 146 169 169 VAL VAL A . n A 1 147 ASP 147 170 170 ASP ASP A . n A 1 148 LEU 148 171 171 LEU LEU A . n A 1 149 LEU 149 172 172 LEU LEU A . n A 1 150 TRP 150 173 173 TRP TRP A . n A 1 151 LEU 151 174 174 LEU LEU A . n A 1 152 LEU 152 175 175 LEU LEU A . n A 1 153 LEU 153 176 176 LEU LEU A . n A 1 154 PHE 154 177 177 PHE PHE A . n A 1 155 MET 155 178 178 MET MET A . n A 1 156 ALA 156 179 179 ALA ALA A . n A 1 157 ILE 157 180 180 ILE ILE A . n A 1 158 LEU 158 181 181 LEU LEU A . n A 1 159 ILE 159 182 182 ILE ILE A . n A 1 160 TRP 160 183 183 TRP TRP A . n A 1 161 MET 161 184 184 MET MET A . n A 1 162 TYR 162 185 ? ? ? A . n B 1 1 SER 1 24 24 SER SER B . n B 1 2 ILE 2 25 25 ILE ILE B . n B 1 3 GLY 3 26 26 GLY GLY B . n B 1 4 LEU 4 27 27 LEU LEU B . n B 1 5 ALA 5 28 28 ALA ALA B . n B 1 6 LEU 6 29 29 LEU LEU B . n B 1 7 LEU 7 30 30 LEU LEU B . n B 1 8 LEU 8 31 31 LEU LEU B . n B 1 9 LEU 9 32 32 LEU LEU B . n B 1 10 LEU 10 33 33 LEU LEU B . n B 1 11 LEU 11 34 34 LEU LEU B . n B 1 12 ALA 12 35 35 ALA ALA B . n B 1 13 LEU 13 36 36 LEU LEU B . n B 1 14 LEU 14 37 37 LEU LEU B . n B 1 15 PHE 15 38 38 PHE PHE B . n B 1 16 TRP 16 39 39 TRP TRP B . n B 1 17 LEU 17 40 40 LEU LEU B . n B 1 18 TYR 18 41 41 TYR TYR B . n B 1 19 ILE 19 42 42 ILE ILE B . n B 1 20 VAL 20 43 43 VAL VAL B . n B 1 21 MET 21 44 44 MET MET B . n B 1 22 SER 22 45 45 SER SER B . n B 1 23 ASN 23 46 46 ASN ASN B . n B 1 24 TRP 24 47 47 TRP TRP B . n B 1 25 THR 25 48 48 THR THR B . n B 1 26 GLY 26 49 49 GLY GLY B . n B 1 27 GLY 27 50 50 GLY GLY B . n B 1 28 ALA 28 51 51 ALA ALA B . n B 1 29 LEU 29 52 52 LEU LEU B . n B 1 30 LEU 30 53 53 LEU LEU B . n B 1 31 VAL 31 54 54 VAL VAL B . n B 1 32 LEU 32 55 55 LEU LEU B . n B 1 33 TYR 33 56 56 TYR TYR B . n B 1 34 SER 34 57 57 SER SER B . n B 1 35 PHE 35 58 58 PHE PHE B . n B 1 36 ALA 36 59 59 ALA ALA B . n B 1 37 LEU 37 60 60 LEU LEU B . n B 1 38 MET 38 61 61 MET MET B . n B 1 39 LEU 39 62 62 LEU LEU B . n B 1 40 ILE 40 63 63 ILE ILE B . n B 1 41 ILE 41 64 64 ILE ILE B . n B 1 42 ILE 42 65 65 ILE ILE B . n B 1 43 ILE 43 66 66 ILE ILE B . n B 1 44 LEU 44 67 67 LEU LEU B . n B 1 45 ILE 45 68 68 ILE ILE B . n B 1 46 ILE 46 69 69 ILE ILE B . n B 1 47 PHE 47 70 70 PHE PHE B . n B 1 48 ILE 48 71 71 ILE ILE B . n B 1 49 PHE 49 72 72 PHE PHE B . n B 1 50 ARG 50 73 73 ARG ARG B . n B 1 51 ARG 51 74 74 ARG ARG B . n B 1 52 ASP 52 75 75 ASP ASP B . n B 1 53 LEU 53 76 76 LEU LEU B . n B 1 54 LEU 54 77 77 LEU LEU B . n B 1 55 CYS 55 78 78 CYS CYS B . n B 1 56 PRO 56 79 79 PRO PRO B . n B 1 57 LEU 57 80 80 LEU LEU B . n B 1 58 GLY 58 81 81 GLY GLY B . n B 1 59 GLY 59 82 82 GLY GLY B . n B 1 60 LEU 60 83 83 LEU LEU B . n B 1 61 GLY 61 84 84 GLY GLY B . n B 1 62 LEU 62 85 85 LEU LEU B . n B 1 63 LEU 63 86 86 LEU LEU B . n B 1 64 LEU 64 87 87 LEU LEU B . n B 1 65 LEU 65 88 88 LEU LEU B . n B 1 66 MET 66 89 89 MET MET B . n B 1 67 ILE 67 90 90 ILE ILE B . n B 1 68 THR 68 91 91 THR THR B . n B 1 69 LEU 69 92 92 LEU LEU B . n B 1 70 LEU 70 93 93 LEU LEU B . n B 1 71 LEU 71 94 94 LEU LEU B . n B 1 72 ILE 72 95 95 ILE ILE B . n B 1 73 ALA 73 96 96 ALA ALA B . n B 1 74 LEU 74 97 97 LEU LEU B . n B 1 75 TRP 75 98 98 TRP TRP B . n B 1 76 ASN 76 99 99 ASN ASN B . n B 1 77 LEU 77 100 100 LEU LEU B . n B 1 78 HIS 78 101 101 HIS HIS B . n B 1 79 GLY 79 102 102 GLY GLY B . n B 1 80 GLN 80 103 103 GLN GLN B . n B 1 81 ALA 81 104 104 ALA ALA B . n B 1 82 LEU 82 105 105 LEU LEU B . n B 1 83 TYR 83 106 106 TYR TYR B . n B 1 84 LEU 84 107 107 LEU LEU B . n B 1 85 GLY 85 108 108 GLY GLY B . n B 1 86 ILE 86 109 109 ILE ILE B . n B 1 87 VAL 87 110 110 VAL VAL B . n B 1 88 LEU 88 111 111 LEU LEU B . n B 1 89 PHE 89 112 112 PHE PHE B . n B 1 90 ILE 90 113 113 ILE ILE B . n B 1 91 PHE 91 114 114 PHE PHE B . n B 1 92 GLY 92 115 115 GLY GLY B . n B 1 93 CYS 93 116 116 CYS CYS B . n B 1 94 LEU 94 117 117 LEU LEU B . n B 1 95 LEU 95 118 118 LEU LEU B . n B 1 96 VAL 96 119 119 VAL VAL B . n B 1 97 LEU 97 120 120 LEU LEU B . n B 1 98 GLY 98 121 121 GLY GLY B . n B 1 99 LEU 99 122 122 LEU LEU B . n B 1 100 TRP 100 123 123 TRP TRP B . n B 1 101 ILE 101 124 124 ILE ILE B . n B 1 102 TYR 102 125 125 TYR TYR B . n B 1 103 PHE 103 126 126 PHE PHE B . n B 1 104 LEU 104 127 127 LEU LEU B . n B 1 105 GLU 105 128 128 GLU GLU B . n B 1 106 ILE 106 129 129 ILE ILE B . n B 1 107 LEU 107 130 130 LEU LEU B . n B 1 108 TRP 108 131 131 TRP TRP B . n B 1 109 ARG 109 132 132 ARG ARG B . n B 1 110 LEU 110 133 133 LEU LEU B . n B 1 111 GLY 111 134 134 GLY GLY B . n B 1 112 ALA 112 135 135 ALA ALA B . n B 1 113 THR 113 136 136 THR THR B . n B 1 114 ILE 114 137 137 ILE ILE B . n B 1 115 TRP 115 138 138 TRP TRP B . n B 1 116 GLN 116 139 139 GLN GLN B . n B 1 117 LEU 117 140 140 LEU LEU B . n B 1 118 LEU 118 141 141 LEU LEU B . n B 1 119 ALA 119 142 142 ALA ALA B . n B 1 120 PHE 120 143 143 PHE PHE B . n B 1 121 ILE 121 144 144 ILE ILE B . n B 1 122 LEU 122 145 145 LEU LEU B . n B 1 123 ALA 123 146 146 ALA ALA B . n B 1 124 PHE 124 147 147 PHE PHE B . n B 1 125 PHE 125 148 148 PHE PHE B . n B 1 126 LEU 126 149 149 LEU LEU B . n B 1 127 ALA 127 150 150 ALA ALA B . n B 1 128 ILE 128 151 151 ILE ILE B . n B 1 129 ILE 129 152 152 ILE ILE B . n B 1 130 LEU 130 153 153 LEU LEU B . n B 1 131 LEU 131 154 154 LEU LEU B . n B 1 132 ILE 132 155 155 ILE ILE B . n B 1 133 ILE 133 156 156 ILE ILE B . n B 1 134 ALA 134 157 157 ALA ALA B . n B 1 135 LEU 135 158 158 LEU LEU B . n B 1 136 TYR 136 159 159 TYR TYR B . n B 1 137 LEU 137 160 160 LEU LEU B . n B 1 138 GLN 138 161 161 GLN GLN B . n B 1 139 GLN 139 162 162 GLN GLN B . n B 1 140 ASN 140 163 163 ASN ASN B . n B 1 141 TRP 141 164 164 TRP TRP B . n B 1 142 TRP 142 165 165 TRP TRP B . n B 1 143 THR 143 166 166 THR THR B . n B 1 144 LEU 144 167 167 LEU LEU B . n B 1 145 LEU 145 168 168 LEU LEU B . n B 1 146 VAL 146 169 169 VAL VAL B . n B 1 147 ASP 147 170 170 ASP ASP B . n B 1 148 LEU 148 171 171 LEU LEU B . n B 1 149 LEU 149 172 172 LEU LEU B . n B 1 150 TRP 150 173 173 TRP TRP B . n B 1 151 LEU 151 174 174 LEU LEU B . n B 1 152 LEU 152 175 175 LEU LEU B . n B 1 153 LEU 153 176 176 LEU LEU B . n B 1 154 PHE 154 177 177 PHE PHE B . n B 1 155 MET 155 178 178 MET MET B . n B 1 156 ALA 156 179 179 ALA ALA B . n B 1 157 ILE 157 180 180 ILE ILE B . n B 1 158 LEU 158 181 181 LEU LEU B . n B 1 159 ILE 159 182 182 ILE ILE B . n B 1 160 TRP 160 183 183 TRP TRP B . n B 1 161 MET 161 184 184 MET MET B . n B 1 162 TYR 162 185 ? ? ? B . n # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8XH6 _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8XH6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8XH6 _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 8XH6 _struct.title 'Structure of EBV LMP1 dimer' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8XH6 _struct_keywords.text 'EBV latent membrane protein 1, VIRAL PROTEIN' _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q7T6U2_EBVG _struct_ref.pdbx_db_accession Q7T6U2 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SIGLALLLLLLALLFWLYIVMSNWTGGALLVLYSFALMLIIIILIIFIFRRDLLCPLGGLGLLLLMITLLLIALWNLHGQ ALYLGIVLFIFGCLLVLGLWIYFLEILWRLGATIWQLLAFILAFFLAIILLIIALYLQQNWWTLLVDLLWLLLFMAILIW MY ; _struct_ref.pdbx_align_begin 24 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8XH6 A 1 ? 162 ? Q7T6U2 24 ? 185 ? 24 185 2 1 8XH6 B 1 ? 162 ? Q7T6U2 24 ? 185 ? 24 185 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 SER A 1 ? SER A 22 ? SER A 24 SER A 45 1 ? 22 HELX_P HELX_P2 AA2 GLY A 27 ? PHE A 49 ? GLY A 50 PHE A 72 1 ? 23 HELX_P HELX_P3 AA3 ARG A 50 ? LEU A 54 ? ARG A 73 LEU A 77 5 ? 5 HELX_P HELX_P4 AA4 LEU A 57 ? ASN A 76 ? LEU A 80 ASN A 99 1 ? 20 HELX_P HELX_P5 AA5 GLN A 80 ? ARG A 109 ? GLN A 103 ARG A 132 1 ? 30 HELX_P HELX_P6 AA6 THR A 113 ? LEU A 137 ? THR A 136 LEU A 160 1 ? 25 HELX_P HELX_P7 AA7 GLN A 139 ? TRP A 160 ? GLN A 162 TRP A 183 1 ? 22 HELX_P HELX_P8 AA8 ILE B 2 ? MET B 21 ? ILE B 25 MET B 44 1 ? 20 HELX_P HELX_P9 AA9 LEU B 29 ? PHE B 49 ? LEU B 52 PHE B 72 1 ? 21 HELX_P HELX_P10 AB1 ARG B 50 ? LEU B 54 ? ARG B 73 LEU B 77 5 ? 5 HELX_P HELX_P11 AB2 LEU B 57 ? LEU B 77 ? LEU B 80 LEU B 100 1 ? 21 HELX_P HELX_P12 AB3 GLN B 80 ? LEU B 110 ? GLN B 103 LEU B 133 1 ? 31 HELX_P HELX_P13 AB4 THR B 113 ? LEU B 137 ? THR B 136 LEU B 160 1 ? 25 HELX_P HELX_P14 AB5 TRP B 141 ? TRP B 160 ? TRP B 164 TRP B 183 1 ? 20 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS B 101 ? ? -140.25 16.36 2 1 GLN B 161 ? ? -66.96 0.63 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 8XH6 _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 8XH6 _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.52 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 5055975 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details ? _em_buffer.pH 7.5 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'LMP1 dimer' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 8XH6 _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 1200 _em_imaging.nominal_defocus_max 1800 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? # _em_vitrification.entry_id 8XH6 _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument ? _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 8XH6 _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A TYR 185 ? A TYR 162 2 1 Y 1 B TYR 185 ? B TYR 162 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 MET N N N N 202 MET CA C N S 203 MET C C N N 204 MET O O N N 205 MET CB C N N 206 MET CG C N N 207 MET SD S N N 208 MET CE C N N 209 MET OXT O N N 210 MET H H N N 211 MET H2 H N N 212 MET HA H N N 213 MET HB2 H N N 214 MET HB3 H N N 215 MET HG2 H N N 216 MET HG3 H N N 217 MET HE1 H N N 218 MET HE2 H N N 219 MET HE3 H N N 220 MET HXT H N N 221 PHE N N N N 222 PHE CA C N S 223 PHE C C N N 224 PHE O O N N 225 PHE CB C N N 226 PHE CG C Y N 227 PHE CD1 C Y N 228 PHE CD2 C Y N 229 PHE CE1 C Y N 230 PHE CE2 C Y N 231 PHE CZ C Y N 232 PHE OXT O N N 233 PHE H H N N 234 PHE H2 H N N 235 PHE HA H N N 236 PHE HB2 H N N 237 PHE HB3 H N N 238 PHE HD1 H N N 239 PHE HD2 H N N 240 PHE HE1 H N N 241 PHE HE2 H N N 242 PHE HZ H N N 243 PHE HXT H N N 244 PRO N N N N 245 PRO CA C N S 246 PRO C C N N 247 PRO O O N N 248 PRO CB C N N 249 PRO CG C N N 250 PRO CD C N N 251 PRO OXT O N N 252 PRO H H N N 253 PRO HA H N N 254 PRO HB2 H N N 255 PRO HB3 H N N 256 PRO HG2 H N N 257 PRO HG3 H N N 258 PRO HD2 H N N 259 PRO HD3 H N N 260 PRO HXT H N N 261 SER N N N N 262 SER CA C N S 263 SER C C N N 264 SER O O N N 265 SER CB C N N 266 SER OG O N N 267 SER OXT O N N 268 SER H H N N 269 SER H2 H N N 270 SER HA H N N 271 SER HB2 H N N 272 SER HB3 H N N 273 SER HG H N N 274 SER HXT H N N 275 THR N N N N 276 THR CA C N S 277 THR C C N N 278 THR O O N N 279 THR CB C N R 280 THR OG1 O N N 281 THR CG2 C N N 282 THR OXT O N N 283 THR H H N N 284 THR H2 H N N 285 THR HA H N N 286 THR HB H N N 287 THR HG1 H N N 288 THR HG21 H N N 289 THR HG22 H N N 290 THR HG23 H N N 291 THR HXT H N N 292 TRP N N N N 293 TRP CA C N S 294 TRP C C N N 295 TRP O O N N 296 TRP CB C N N 297 TRP CG C Y N 298 TRP CD1 C Y N 299 TRP CD2 C Y N 300 TRP NE1 N Y N 301 TRP CE2 C Y N 302 TRP CE3 C Y N 303 TRP CZ2 C Y N 304 TRP CZ3 C Y N 305 TRP CH2 C Y N 306 TRP OXT O N N 307 TRP H H N N 308 TRP H2 H N N 309 TRP HA H N N 310 TRP HB2 H N N 311 TRP HB3 H N N 312 TRP HD1 H N N 313 TRP HE1 H N N 314 TRP HE3 H N N 315 TRP HZ2 H N N 316 TRP HZ3 H N N 317 TRP HH2 H N N 318 TRP HXT H N N 319 TYR N N N N 320 TYR CA C N S 321 TYR C C N N 322 TYR O O N N 323 TYR CB C N N 324 TYR CG C Y N 325 TYR CD1 C Y N 326 TYR CD2 C Y N 327 TYR CE1 C Y N 328 TYR CE2 C Y N 329 TYR CZ C Y N 330 TYR OH O N N 331 TYR OXT O N N 332 TYR H H N N 333 TYR H2 H N N 334 TYR HA H N N 335 TYR HB2 H N N 336 TYR HB3 H N N 337 TYR HD1 H N N 338 TYR HD2 H N N 339 TYR HE1 H N N 340 TYR HE2 H N N 341 TYR HH H N N 342 TYR HXT H N N 343 VAL N N N N 344 VAL CA C N S 345 VAL C C N N 346 VAL O O N N 347 VAL CB C N N 348 VAL CG1 C N N 349 VAL CG2 C N N 350 VAL OXT O N N 351 VAL H H N N 352 VAL H2 H N N 353 VAL HA H N N 354 VAL HB H N N 355 VAL HG11 H N N 356 VAL HG12 H N N 357 VAL HG13 H N N 358 VAL HG21 H N N 359 VAL HG22 H N N 360 VAL HG23 H N N 361 VAL HXT H N N 362 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 MET N CA sing N N 192 MET N H sing N N 193 MET N H2 sing N N 194 MET CA C sing N N 195 MET CA CB sing N N 196 MET CA HA sing N N 197 MET C O doub N N 198 MET C OXT sing N N 199 MET CB CG sing N N 200 MET CB HB2 sing N N 201 MET CB HB3 sing N N 202 MET CG SD sing N N 203 MET CG HG2 sing N N 204 MET CG HG3 sing N N 205 MET SD CE sing N N 206 MET CE HE1 sing N N 207 MET CE HE2 sing N N 208 MET CE HE3 sing N N 209 MET OXT HXT sing N N 210 PHE N CA sing N N 211 PHE N H sing N N 212 PHE N H2 sing N N 213 PHE CA C sing N N 214 PHE CA CB sing N N 215 PHE CA HA sing N N 216 PHE C O doub N N 217 PHE C OXT sing N N 218 PHE CB CG sing N N 219 PHE CB HB2 sing N N 220 PHE CB HB3 sing N N 221 PHE CG CD1 doub Y N 222 PHE CG CD2 sing Y N 223 PHE CD1 CE1 sing Y N 224 PHE CD1 HD1 sing N N 225 PHE CD2 CE2 doub Y N 226 PHE CD2 HD2 sing N N 227 PHE CE1 CZ doub Y N 228 PHE CE1 HE1 sing N N 229 PHE CE2 CZ sing Y N 230 PHE CE2 HE2 sing N N 231 PHE CZ HZ sing N N 232 PHE OXT HXT sing N N 233 PRO N CA sing N N 234 PRO N CD sing N N 235 PRO N H sing N N 236 PRO CA C sing N N 237 PRO CA CB sing N N 238 PRO CA HA sing N N 239 PRO C O doub N N 240 PRO C OXT sing N N 241 PRO CB CG sing N N 242 PRO CB HB2 sing N N 243 PRO CB HB3 sing N N 244 PRO CG CD sing N N 245 PRO CG HG2 sing N N 246 PRO CG HG3 sing N N 247 PRO CD HD2 sing N N 248 PRO CD HD3 sing N N 249 PRO OXT HXT sing N N 250 SER N CA sing N N 251 SER N H sing N N 252 SER N H2 sing N N 253 SER CA C sing N N 254 SER CA CB sing N N 255 SER CA HA sing N N 256 SER C O doub N N 257 SER C OXT sing N N 258 SER CB OG sing N N 259 SER CB HB2 sing N N 260 SER CB HB3 sing N N 261 SER OG HG sing N N 262 SER OXT HXT sing N N 263 THR N CA sing N N 264 THR N H sing N N 265 THR N H2 sing N N 266 THR CA C sing N N 267 THR CA CB sing N N 268 THR CA HA sing N N 269 THR C O doub N N 270 THR C OXT sing N N 271 THR CB OG1 sing N N 272 THR CB CG2 sing N N 273 THR CB HB sing N N 274 THR OG1 HG1 sing N N 275 THR CG2 HG21 sing N N 276 THR CG2 HG22 sing N N 277 THR CG2 HG23 sing N N 278 THR OXT HXT sing N N 279 TRP N CA sing N N 280 TRP N H sing N N 281 TRP N H2 sing N N 282 TRP CA C sing N N 283 TRP CA CB sing N N 284 TRP CA HA sing N N 285 TRP C O doub N N 286 TRP C OXT sing N N 287 TRP CB CG sing N N 288 TRP CB HB2 sing N N 289 TRP CB HB3 sing N N 290 TRP CG CD1 doub Y N 291 TRP CG CD2 sing Y N 292 TRP CD1 NE1 sing Y N 293 TRP CD1 HD1 sing N N 294 TRP CD2 CE2 doub Y N 295 TRP CD2 CE3 sing Y N 296 TRP NE1 CE2 sing Y N 297 TRP NE1 HE1 sing N N 298 TRP CE2 CZ2 sing Y N 299 TRP CE3 CZ3 doub Y N 300 TRP CE3 HE3 sing N N 301 TRP CZ2 CH2 doub Y N 302 TRP CZ2 HZ2 sing N N 303 TRP CZ3 CH2 sing Y N 304 TRP CZ3 HZ3 sing N N 305 TRP CH2 HH2 sing N N 306 TRP OXT HXT sing N N 307 TYR N CA sing N N 308 TYR N H sing N N 309 TYR N H2 sing N N 310 TYR CA C sing N N 311 TYR CA CB sing N N 312 TYR CA HA sing N N 313 TYR C O doub N N 314 TYR C OXT sing N N 315 TYR CB CG sing N N 316 TYR CB HB2 sing N N 317 TYR CB HB3 sing N N 318 TYR CG CD1 doub Y N 319 TYR CG CD2 sing Y N 320 TYR CD1 CE1 sing Y N 321 TYR CD1 HD1 sing N N 322 TYR CD2 CE2 doub Y N 323 TYR CD2 HD2 sing N N 324 TYR CE1 CZ doub Y N 325 TYR CE1 HE1 sing N N 326 TYR CE2 CZ sing Y N 327 TYR CE2 HE2 sing N N 328 TYR CZ OH sing N N 329 TYR OH HH sing N N 330 TYR OXT HXT sing N N 331 VAL N CA sing N N 332 VAL N H sing N N 333 VAL N H2 sing N N 334 VAL CA C sing N N 335 VAL CA CB sing N N 336 VAL CA HA sing N N 337 VAL C O doub N N 338 VAL C OXT sing N N 339 VAL CB CG1 sing N N 340 VAL CB CG2 sing N N 341 VAL CB HB sing N N 342 VAL CG1 HG11 sing N N 343 VAL CG1 HG12 sing N N 344 VAL CG1 HG13 sing N N 345 VAL CG2 HG21 sing N N 346 VAL CG2 HG22 sing N N 347 VAL CG2 HG23 sing N N 348 VAL OXT HXT sing N N 349 # _em_admin.current_status REL _em_admin.deposition_date 2023-12-17 _em_admin.deposition_site PDBJ _em_admin.entry_id 8XH6 _em_admin.last_update 2024-07-31 _em_admin.map_release_date 2024-06-26 _em_admin.title 'Structure of EBV LMP1 dimer' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 10376 _em_entity_assembly_naturalsource.organism 'human gammaherpesvirus 4' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.ncbi_tax_id 562 _em_entity_assembly_recombinant.organism 'Escherichia coli' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 60 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K2 SUMMIT (4k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'MODEL REFINEMENT' ? 1 ? ? ? PHENIX 1.19.1_4122: 'IMAGE ACQUISITION' ? 2 1 1 1 ? ? 'PARTICLE SELECTION' ? 3 1 1 1 ? ? 'VOLUME SELECTION' ? 4 1 1 1 ? ? CLASSIFICATION ? 5 1 1 1 ? ? MASKING ? 6 1 1 1 ? ? RECONSTRUCTION ? 7 1 1 1 ? ? 'INITIAL EULER ASSIGNMENT' ? 8 1 1 1 ? ? 'FINAL EULER ASSIGNMENT' ? 9 1 1 1 ? ? 'CTF CORRECTION' ? 10 1 1 1 ? ? 'LAYERLINE INDEXING' ? 11 1 1 1 ? ? 'DIFFRACTION INDEXING' ? 12 1 1 1 ? ? 'MODEL FITTING' ? 13 1 1 1 ? ? 'SERIES ALIGNMENT' ? 14 1 1 1 ? ? 'MOLECULAR REPLACEMENT' ? 15 1 1 1 ? ? 'LATTICE DISTORTION CORRECTION' ? 16 1 1 1 ? ? 'SYMMETRY DETERMINATION' ? 17 1 1 1 ? ? 'CRYSTALLOGRAPHY MERGING' ? 18 1 1 1 ? ? OTHER ? 19 1 1 1 ? ? # _em_specimen.concentration ? _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'Not funded' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _atom_sites.entry_id 8XH6 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_