HEADER IMMUNE SYSTEM 23-DEC-23 8XKK TITLE CKAPPA DOMAIN OF MOUSE IMMUNOGLOBULIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: IMMUNOGLOBULIN KAPPA CONSTANT; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: IG KAPPA CHAIN C REGION MOPC 21; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: IGKC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STRUCTURE FROM CYANA 3.98.15, IMMUNE SYSTEM EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.YANAKA,A.KODAMA,Y.MIYANOIRI,K.KATO REVDAT 1 05-FEB-25 8XKK 0 JRNL AUTH S.YANAKA,A.KODAMA,S.NISHIGUCHI,R.FUJITA,J.SHEN,P.BOONSRI, JRNL AUTH 2 D.SUNG,Y.ISONO,H.YAGI,Y.MIYANOIRI,T.UCHIHASHI,K.KATO JRNL TITL IDENTIFICATION OF POTENTIAL C1-BINDING SITES IN THE JRNL TITL 2 IMMUNOGLOBULIN CL DOMAINS. JRNL REF INT.IMMUNOL. V. 36 405 2024 JRNL REFN ESSN 1460-2377 JRNL PMID 38564192 JRNL DOI 10.1093/INTIMM/DXAE017 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARTINA, ARTINA REMARK 3 AUTHORS : KLUKOWSKI, P., RIEK, R. AND GUNTERT, P. (ARTINA), REMARK 3 KLUKOWSKI, P., RIEK, R. AND GUNTERT, P. (ARTINA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8XKK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-JAN-24. REMARK 100 THE DEPOSITION ID IS D_1300043676. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : NOT DEFINED REMARK 210 PRESSURE : 1 PA REMARK 210 SAMPLE CONTENTS : 1.6 MM [U-13C; U-15N] CKAPPA REMARK 210 DOMAIN OF MOUSE IMMUNOGLOBULIN, REMARK 210 5 MM NAPI, 50 MM SODIUM CHLORIDE, REMARK 210 95% H2O/5% D2O; 1.6 MM [U-13C; REMARK 210 U-15N] CKAPPA DOMAIN OF MOUSE REMARK 210 IMMUNOGLOBULIN, 95% H2O/5% D2O; REMARK 210 1.6 MM [U-13C; U-15N] CKAPPA REMARK 210 DOMAIN OF MOUSE IMMUNOGLOBULIN, REMARK 210 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D C(CO)NH; 3D REMARK 210 CBCA(CO)NH; 3D HNCACB; 3D HCACO; REMARK 210 3D HNCO; 3D HN(CO)CA; 3D HBHA(CO) REMARK 210 NH; 3D CCH-TOCSY; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY; 3D 1H- REMARK 210 15N TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE NEO REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ARTINA REMARK 210 METHOD USED : DISTANCE GEOMETRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 40 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 5 -170.39 -69.79 REMARK 500 1 ASN A 30 96.61 -57.65 REMARK 500 1 TYR A 32 179.76 -44.07 REMARK 500 1 PRO A 33 -165.77 -69.82 REMARK 500 1 ASP A 35 94.61 -49.38 REMARK 500 1 ILE A 36 144.54 179.78 REMARK 500 1 SER A 66 100.41 178.88 REMARK 500 1 SER A 106 -70.41 -67.92 REMARK 500 1 ASN A 108 -76.06 -107.65 REMARK 500 2 PRO A 5 -170.79 -69.73 REMARK 500 2 ASN A 30 107.17 -26.78 REMARK 500 2 TYR A 32 179.84 -44.08 REMARK 500 2 PRO A 33 -167.31 -69.79 REMARK 500 2 ASP A 35 96.83 -47.20 REMARK 500 2 ILE A 36 146.04 -178.73 REMARK 500 2 THR A 56 88.14 -65.13 REMARK 500 2 SER A 66 100.00 177.46 REMARK 500 2 GLU A 107 103.89 -49.85 REMARK 500 2 LEU A 109 48.67 -88.28 REMARK 500 3 PRO A 5 -174.18 -69.73 REMARK 500 3 ASN A 30 105.29 -22.35 REMARK 500 3 TYR A 32 179.39 -44.35 REMARK 500 3 PRO A 33 -167.61 -69.67 REMARK 500 3 ASP A 35 96.32 -47.70 REMARK 500 3 ILE A 36 145.03 -178.52 REMARK 500 3 ASN A 49 101.13 -54.54 REMARK 500 3 THR A 56 91.05 -64.48 REMARK 500 3 SER A 66 96.36 179.05 REMARK 500 3 GLU A 107 104.71 -48.48 REMARK 500 4 PRO A 5 -170.35 -69.75 REMARK 500 4 ASN A 30 105.64 -23.50 REMARK 500 4 TYR A 32 179.47 -44.52 REMARK 500 4 PRO A 33 -167.17 -69.73 REMARK 500 4 ASP A 35 95.39 -48.06 REMARK 500 4 ILE A 36 144.66 -179.00 REMARK 500 4 THR A 56 88.26 -65.54 REMARK 500 4 SER A 66 96.26 179.06 REMARK 500 4 GLU A 107 79.25 35.06 REMARK 500 4 LEU A 109 -175.35 -58.99 REMARK 500 5 PRO A 5 -169.38 -69.77 REMARK 500 5 ALA A 22 107.74 -160.67 REMARK 500 5 ASN A 30 105.43 -24.13 REMARK 500 5 TYR A 32 179.41 -43.86 REMARK 500 5 PRO A 33 -166.83 -69.80 REMARK 500 5 ASP A 35 97.17 -46.93 REMARK 500 5 ILE A 36 146.94 -178.98 REMARK 500 5 THR A 56 97.96 -57.54 REMARK 500 5 SER A 66 107.77 179.36 REMARK 500 5 SER A 106 -70.43 -65.21 REMARK 500 5 ASN A 108 -76.02 -65.33 REMARK 500 REMARK 500 THIS ENTRY HAS 217 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 36631 RELATED DB: BMRB REMARK 900 CKAPPA DOMAIN OF MOUSE IMMUNOGLOBULIN DBREF 8XKK A 1 105 UNP P01837 IGKC_MOUSE 2 106 SEQADV 8XKK SER A 106 UNP P01837 EXPRESSION TAG SEQADV 8XKK GLU A 107 UNP P01837 EXPRESSION TAG SEQADV 8XKK ASN A 108 UNP P01837 EXPRESSION TAG SEQADV 8XKK LEU A 109 UNP P01837 EXPRESSION TAG SEQADV 8XKK TYR A 110 UNP P01837 EXPRESSION TAG SEQADV 8XKK PHE A 111 UNP P01837 EXPRESSION TAG SEQADV 8XKK GLN A 112 UNP P01837 EXPRESSION TAG SEQRES 1 A 112 ALA ASP ALA ALA PRO THR VAL SER ILE PHE PRO PRO SER SEQRES 2 A 112 SER GLU GLN LEU THR SER GLY GLY ALA SER VAL VAL CYS SEQRES 3 A 112 PHE LEU ASN ASN PHE TYR PRO LYS ASP ILE ASN VAL LYS SEQRES 4 A 112 TRP LYS ILE ASP GLY SER GLU ARG GLN ASN GLY VAL LEU SEQRES 5 A 112 ASN SER TRP THR ASP GLN ASP SER LYS ASP SER THR TYR SEQRES 6 A 112 SER MET SER SER THR LEU THR LEU THR LYS ASP GLU TYR SEQRES 7 A 112 GLU ARG HIS ASN SER TYR THR CYS GLU ALA THR HIS LYS SEQRES 8 A 112 THR SER THR SER PRO ILE VAL LYS SER PHE ASN ARG ASN SEQRES 9 A 112 GLU SER GLU ASN LEU TYR PHE GLN HELIX 1 AA1 SER A 13 THR A 18 1 6 HELIX 2 AA2 LYS A 75 ARG A 80 5 6 SHEET 1 AA1 2 SER A 8 PHE A 10 0 SHEET 2 AA1 2 VAL A 25 PHE A 27 -1 O VAL A 25 N PHE A 10 SHEET 1 AA2 4 SER A 45 GLU A 46 0 SHEET 2 AA2 4 ILE A 36 ILE A 42 -1 N ILE A 42 O SER A 45 SHEET 3 AA2 4 SER A 83 HIS A 90 -1 O GLU A 87 N LYS A 39 SHEET 4 AA2 4 ILE A 97 ASN A 102 -1 O ILE A 97 N ALA A 88 SSBOND 1 CYS A 26 CYS A 86 1555 1555 2.01 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 TER 1709 GLN A 112 ENDMDL MODEL 2 TER 1709 GLN A 112 ENDMDL MODEL 3 TER 1709 GLN A 112 ENDMDL MODEL 4 TER 1709 GLN A 112 ENDMDL MODEL 5 TER 1709 GLN A 112 ENDMDL MODEL 6 TER 1709 GLN A 112 ENDMDL MODEL 7 TER 1709 GLN A 112 ENDMDL MODEL 8 TER 1709 GLN A 112 ENDMDL MODEL 9 TER 1709 GLN A 112 ENDMDL MODEL 10 TER 1709 GLN A 112 ENDMDL MODEL 11 TER 1709 GLN A 112 ENDMDL MODEL 12 TER 1709 GLN A 112 ENDMDL MODEL 13 TER 1709 GLN A 112 ENDMDL MODEL 14 TER 1709 GLN A 112 ENDMDL MODEL 15 TER 1709 GLN A 112 ENDMDL MODEL 16 TER 1709 GLN A 112 ENDMDL MODEL 17 TER 1709 GLN A 112 ENDMDL MODEL 18 TER 1709 GLN A 112 ENDMDL MODEL 19 TER 1709 GLN A 112 ENDMDL MODEL 20 TER 1709 GLN A 112 ENDMDL CONECT 335 1290 CONECT 1290 335 MASTER 153 0 0 2 6 0 0 6 883 1 2 9 END