data_8XRQ # _entry.id 8XRQ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.402 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8XRQ pdb_00008xrq 10.2210/pdb8xrq/pdb WWPDB D_1300044038 ? ? EMDB EMD-38610 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2024-12-18 ? 2 'Structure model' 1 1 2025-03-19 ? 3 'Structure model' 1 2 2025-03-26 ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 2 'Structure model' em_admin 4 3 'Structure model' citation 5 3 'Structure model' em_admin # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.journal_volume' 6 2 'Structure model' '_citation.page_first' 7 2 'Structure model' '_citation.page_last' 8 2 'Structure model' '_citation.pdbx_database_id_DOI' 9 2 'Structure model' '_citation.title' 10 2 'Structure model' '_citation.year' 11 2 'Structure model' '_em_admin.last_update' 12 3 'Structure model' '_citation.pdbx_database_id_PubMed' 13 3 'Structure model' '_citation.title' 14 3 'Structure model' '_em_admin.last_update' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8XRQ _pdbx_database_status.recvd_initial_deposition_date 2024-01-08 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'SARS-CoV-2 BA.1 spike RBD in complex bound with VacBB-639' _pdbx_database_related.db_id EMD-38610 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_contact_author.id 3 _pdbx_contact_author.email zhangzheng1975@aliyun.com _pdbx_contact_author.name_first zheng _pdbx_contact_author.name_last zhang _pdbx_contact_author.name_mi ? _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0002-3544-1389 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Liu, C.C.' 1 0000-0002-8675-9100 'Ju, B.' 2 0000-0003-0768-6327 'Zhang, Z.' 3 0000-0002-3544-1389 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'J Immunol.' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1550-6606 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 214 _citation.language ? _citation.page_first 278 _citation.page_last 289 _citation.title 'Rapid clonal expansion and somatic hypermutation contribute to the fate of SARS-CoV-2 broadly neutralizing antibodies.' _citation.year 2025 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/jimmun/vkae056 _citation.pdbx_database_id_PubMed 40073246 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wang, M.' 1 ? primary 'Liu, C.' 2 ? primary 'Fan, Q.' 3 ? primary 'Sun, Y.' 4 ? primary 'Tang, S.' 5 ? primary 'Guo, H.' 6 ? primary 'Zhou, B.' 7 ? primary 'Wang, H.' 8 ? primary 'Ge, X.' 9 ? primary 'Zhang, Z.' 10 ? primary 'Ju, B.' 11 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Spike protein S1' 25415.879 1 ? ? ? ? 2 polymer man 'Heavy chain of VacBB 639 Fab' 13325.778 1 ? ? ? ? 3 polymer man 'Light chain of VacBB 639 Fab' 11664.938 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;RVQPTESIVRFPNITNLCPFDEVFNATRFASVYAWNRKRISNCVADYSVLYNLAPFFTFKCYGVSPTKLNDLCFTNVYAD SFVIRGDEVRQIAPGQTGNIADYNYKLPDDFTGCVIAWNSNKLDSKVSGNYNYLYRLFRKSNLKPFERDISTEIYQAGNK PCNGVAGFNCYFPLRSYSFRPTYGVGHQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNF ; ;RVQPTESIVRFPNITNLCPFDEVFNATRFASVYAWNRKRISNCVADYSVLYNLAPFFTFKCYGVSPTKLNDLCFTNVYAD SFVIRGDEVRQIAPGQTGNIADYNYKLPDDFTGCVIAWNSNKLDSKVSGNYNYLYRLFRKSNLKPFERDISTEIYQAGNK PCNGVAGFNCYFPLRSYSFRPTYGVGHQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNF ; A ? 2 'polypeptide(L)' no no ;QVQLQESGPGLVKPSETLSLTCTVSGGSISSYYWSWIRQSPGKGLEWIGYVYNSGGTNYNPSLRSRVTISVDTSKNHFSL KLRSVTTADTGVYYCARDLGYSSGWPDAFDIWGQGKMVTVSA ; ;QVQLQESGPGLVKPSETLSLTCTVSGGSISSYYWSWIRQSPGKGLEWIGYVYNSGGTNYNPSLRSRVTISVDTSKNHFSL KLRSVTTADTGVYYCARDLGYSSGWPDAFDIWGQGKMVTVSA ; B ? 3 'polypeptide(L)' no no ;EIVLTQSPATLSLSPGERATLSCTASQSVFSYLAWYQQKPGQAPRLLIYGAFNRATGIPARFSGSGSETDFTLTISSLEP EDFAVYYCQQHSNWPGTFGQGTKVEIK ; ;EIVLTQSPATLSLSPGERATLSCTASQSVFSYLAWYQQKPGQAPRLLIYGAFNRATGIPARFSGSGSETDFTLTISSLEP EDFAVYYCQQHSNWPGTFGQGTKVEIK ; C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ARG n 1 2 VAL n 1 3 GLN n 1 4 PRO n 1 5 THR n 1 6 GLU n 1 7 SER n 1 8 ILE n 1 9 VAL n 1 10 ARG n 1 11 PHE n 1 12 PRO n 1 13 ASN n 1 14 ILE n 1 15 THR n 1 16 ASN n 1 17 LEU n 1 18 CYS n 1 19 PRO n 1 20 PHE n 1 21 ASP n 1 22 GLU n 1 23 VAL n 1 24 PHE n 1 25 ASN n 1 26 ALA n 1 27 THR n 1 28 ARG n 1 29 PHE n 1 30 ALA n 1 31 SER n 1 32 VAL n 1 33 TYR n 1 34 ALA n 1 35 TRP n 1 36 ASN n 1 37 ARG n 1 38 LYS n 1 39 ARG n 1 40 ILE n 1 41 SER n 1 42 ASN n 1 43 CYS n 1 44 VAL n 1 45 ALA n 1 46 ASP n 1 47 TYR n 1 48 SER n 1 49 VAL n 1 50 LEU n 1 51 TYR n 1 52 ASN n 1 53 LEU n 1 54 ALA n 1 55 PRO n 1 56 PHE n 1 57 PHE n 1 58 THR n 1 59 PHE n 1 60 LYS n 1 61 CYS n 1 62 TYR n 1 63 GLY n 1 64 VAL n 1 65 SER n 1 66 PRO n 1 67 THR n 1 68 LYS n 1 69 LEU n 1 70 ASN n 1 71 ASP n 1 72 LEU n 1 73 CYS n 1 74 PHE n 1 75 THR n 1 76 ASN n 1 77 VAL n 1 78 TYR n 1 79 ALA n 1 80 ASP n 1 81 SER n 1 82 PHE n 1 83 VAL n 1 84 ILE n 1 85 ARG n 1 86 GLY n 1 87 ASP n 1 88 GLU n 1 89 VAL n 1 90 ARG n 1 91 GLN n 1 92 ILE n 1 93 ALA n 1 94 PRO n 1 95 GLY n 1 96 GLN n 1 97 THR n 1 98 GLY n 1 99 ASN n 1 100 ILE n 1 101 ALA n 1 102 ASP n 1 103 TYR n 1 104 ASN n 1 105 TYR n 1 106 LYS n 1 107 LEU n 1 108 PRO n 1 109 ASP n 1 110 ASP n 1 111 PHE n 1 112 THR n 1 113 GLY n 1 114 CYS n 1 115 VAL n 1 116 ILE n 1 117 ALA n 1 118 TRP n 1 119 ASN n 1 120 SER n 1 121 ASN n 1 122 LYS n 1 123 LEU n 1 124 ASP n 1 125 SER n 1 126 LYS n 1 127 VAL n 1 128 SER n 1 129 GLY n 1 130 ASN n 1 131 TYR n 1 132 ASN n 1 133 TYR n 1 134 LEU n 1 135 TYR n 1 136 ARG n 1 137 LEU n 1 138 PHE n 1 139 ARG n 1 140 LYS n 1 141 SER n 1 142 ASN n 1 143 LEU n 1 144 LYS n 1 145 PRO n 1 146 PHE n 1 147 GLU n 1 148 ARG n 1 149 ASP n 1 150 ILE n 1 151 SER n 1 152 THR n 1 153 GLU n 1 154 ILE n 1 155 TYR n 1 156 GLN n 1 157 ALA n 1 158 GLY n 1 159 ASN n 1 160 LYS n 1 161 PRO n 1 162 CYS n 1 163 ASN n 1 164 GLY n 1 165 VAL n 1 166 ALA n 1 167 GLY n 1 168 PHE n 1 169 ASN n 1 170 CYS n 1 171 TYR n 1 172 PHE n 1 173 PRO n 1 174 LEU n 1 175 ARG n 1 176 SER n 1 177 TYR n 1 178 SER n 1 179 PHE n 1 180 ARG n 1 181 PRO n 1 182 THR n 1 183 TYR n 1 184 GLY n 1 185 VAL n 1 186 GLY n 1 187 HIS n 1 188 GLN n 1 189 PRO n 1 190 TYR n 1 191 ARG n 1 192 VAL n 1 193 VAL n 1 194 VAL n 1 195 LEU n 1 196 SER n 1 197 PHE n 1 198 GLU n 1 199 LEU n 1 200 LEU n 1 201 HIS n 1 202 ALA n 1 203 PRO n 1 204 ALA n 1 205 THR n 1 206 VAL n 1 207 CYS n 1 208 GLY n 1 209 PRO n 1 210 LYS n 1 211 LYS n 1 212 SER n 1 213 THR n 1 214 ASN n 1 215 LEU n 1 216 VAL n 1 217 LYS n 1 218 ASN n 1 219 LYS n 1 220 CYS n 1 221 VAL n 1 222 ASN n 1 223 PHE n 2 1 GLN n 2 2 VAL n 2 3 GLN n 2 4 LEU n 2 5 GLN n 2 6 GLU n 2 7 SER n 2 8 GLY n 2 9 PRO n 2 10 GLY n 2 11 LEU n 2 12 VAL n 2 13 LYS n 2 14 PRO n 2 15 SER n 2 16 GLU n 2 17 THR n 2 18 LEU n 2 19 SER n 2 20 LEU n 2 21 THR n 2 22 CYS n 2 23 THR n 2 24 VAL n 2 25 SER n 2 26 GLY n 2 27 GLY n 2 28 SER n 2 29 ILE n 2 30 SER n 2 31 SER n 2 32 TYR n 2 33 TYR n 2 34 TRP n 2 35 SER n 2 36 TRP n 2 37 ILE n 2 38 ARG n 2 39 GLN n 2 40 SER n 2 41 PRO n 2 42 GLY n 2 43 LYS n 2 44 GLY n 2 45 LEU n 2 46 GLU n 2 47 TRP n 2 48 ILE n 2 49 GLY n 2 50 TYR n 2 51 VAL n 2 52 TYR n 2 53 ASN n 2 54 SER n 2 55 GLY n 2 56 GLY n 2 57 THR n 2 58 ASN n 2 59 TYR n 2 60 ASN n 2 61 PRO n 2 62 SER n 2 63 LEU n 2 64 ARG n 2 65 SER n 2 66 ARG n 2 67 VAL n 2 68 THR n 2 69 ILE n 2 70 SER n 2 71 VAL n 2 72 ASP n 2 73 THR n 2 74 SER n 2 75 LYS n 2 76 ASN n 2 77 HIS n 2 78 PHE n 2 79 SER n 2 80 LEU n 2 81 LYS n 2 82 LEU n 2 83 ARG n 2 84 SER n 2 85 VAL n 2 86 THR n 2 87 THR n 2 88 ALA n 2 89 ASP n 2 90 THR n 2 91 GLY n 2 92 VAL n 2 93 TYR n 2 94 TYR n 2 95 CYS n 2 96 ALA n 2 97 ARG n 2 98 ASP n 2 99 LEU n 2 100 GLY n 2 101 TYR n 2 102 SER n 2 103 SER n 2 104 GLY n 2 105 TRP n 2 106 PRO n 2 107 ASP n 2 108 ALA n 2 109 PHE n 2 110 ASP n 2 111 ILE n 2 112 TRP n 2 113 GLY n 2 114 GLN n 2 115 GLY n 2 116 LYS n 2 117 MET n 2 118 VAL n 2 119 THR n 2 120 VAL n 2 121 SER n 2 122 ALA n 3 1 GLU n 3 2 ILE n 3 3 VAL n 3 4 LEU n 3 5 THR n 3 6 GLN n 3 7 SER n 3 8 PRO n 3 9 ALA n 3 10 THR n 3 11 LEU n 3 12 SER n 3 13 LEU n 3 14 SER n 3 15 PRO n 3 16 GLY n 3 17 GLU n 3 18 ARG n 3 19 ALA n 3 20 THR n 3 21 LEU n 3 22 SER n 3 23 CYS n 3 24 THR n 3 25 ALA n 3 26 SER n 3 27 GLN n 3 28 SER n 3 29 VAL n 3 30 PHE n 3 31 SER n 3 32 TYR n 3 33 LEU n 3 34 ALA n 3 35 TRP n 3 36 TYR n 3 37 GLN n 3 38 GLN n 3 39 LYS n 3 40 PRO n 3 41 GLY n 3 42 GLN n 3 43 ALA n 3 44 PRO n 3 45 ARG n 3 46 LEU n 3 47 LEU n 3 48 ILE n 3 49 TYR n 3 50 GLY n 3 51 ALA n 3 52 PHE n 3 53 ASN n 3 54 ARG n 3 55 ALA n 3 56 THR n 3 57 GLY n 3 58 ILE n 3 59 PRO n 3 60 ALA n 3 61 ARG n 3 62 PHE n 3 63 SER n 3 64 GLY n 3 65 SER n 3 66 GLY n 3 67 SER n 3 68 GLU n 3 69 THR n 3 70 ASP n 3 71 PHE n 3 72 THR n 3 73 LEU n 3 74 THR n 3 75 ILE n 3 76 SER n 3 77 SER n 3 78 LEU n 3 79 GLU n 3 80 PRO n 3 81 GLU n 3 82 ASP n 3 83 PHE n 3 84 ALA n 3 85 VAL n 3 86 TYR n 3 87 TYR n 3 88 CYS n 3 89 GLN n 3 90 GLN n 3 91 HIS n 3 92 SER n 3 93 ASN n 3 94 TRP n 3 95 PRO n 3 96 GLY n 3 97 THR n 3 98 PHE n 3 99 GLY n 3 100 GLN n 3 101 GLY n 3 102 THR n 3 103 LYS n 3 104 VAL n 3 105 GLU n 3 106 ILE n 3 107 LYS n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 223 ? ? 'S, 2' ? ? ? ? ? ? 'Severe acute respiratory syndrome coronavirus 2' 2697049 ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? HEK293 ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 122 ? ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? HEK293 ? ? ? ? ? ? ? ? ? ? ? ? 3 1 sample 'Biological sequence' 1 107 ? ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? HEK293 ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ARG 1 319 ? ? ? A . n A 1 2 VAL 2 320 ? ? ? A . n A 1 3 GLN 3 321 ? ? ? A . n A 1 4 PRO 4 322 ? ? ? A . n A 1 5 THR 5 323 ? ? ? A . n A 1 6 GLU 6 324 ? ? ? A . n A 1 7 SER 7 325 ? ? ? A . n A 1 8 ILE 8 326 ? ? ? A . n A 1 9 VAL 9 327 ? ? ? A . n A 1 10 ARG 10 328 ? ? ? A . n A 1 11 PHE 11 329 ? ? ? A . n A 1 12 PRO 12 330 ? ? ? A . n A 1 13 ASN 13 331 ? ? ? A . n A 1 14 ILE 14 332 ? ? ? A . n A 1 15 THR 15 333 ? ? ? A . n A 1 16 ASN 16 334 ? ? ? A . n A 1 17 LEU 17 335 ? ? ? A . n A 1 18 CYS 18 336 ? ? ? A . n A 1 19 PRO 19 337 337 PRO PRO A . n A 1 20 PHE 20 338 338 PHE PHE A . n A 1 21 ASP 21 339 339 ASP ASP A . n A 1 22 GLU 22 340 340 GLU GLU A . n A 1 23 VAL 23 341 341 VAL VAL A . n A 1 24 PHE 24 342 342 PHE PHE A . n A 1 25 ASN 25 343 343 ASN ASN A . n A 1 26 ALA 26 344 344 ALA ALA A . n A 1 27 THR 27 345 345 THR THR A . n A 1 28 ARG 28 346 346 ARG ARG A . n A 1 29 PHE 29 347 347 PHE PHE A . n A 1 30 ALA 30 348 348 ALA ALA A . n A 1 31 SER 31 349 349 SER SER A . n A 1 32 VAL 32 350 350 VAL VAL A . n A 1 33 TYR 33 351 351 TYR TYR A . n A 1 34 ALA 34 352 352 ALA ALA A . n A 1 35 TRP 35 353 353 TRP TRP A . n A 1 36 ASN 36 354 354 ASN ASN A . n A 1 37 ARG 37 355 355 ARG ARG A . n A 1 38 LYS 38 356 356 LYS LYS A . n A 1 39 ARG 39 357 357 ARG ARG A . n A 1 40 ILE 40 358 358 ILE ILE A . n A 1 41 SER 41 359 359 SER SER A . n A 1 42 ASN 42 360 360 ASN ASN A . n A 1 43 CYS 43 361 361 CYS CYS A . n A 1 44 VAL 44 362 362 VAL VAL A . n A 1 45 ALA 45 363 363 ALA ALA A . n A 1 46 ASP 46 364 364 ASP ASP A . n A 1 47 TYR 47 365 365 TYR TYR A . n A 1 48 SER 48 366 366 SER SER A . n A 1 49 VAL 49 367 367 VAL VAL A . n A 1 50 LEU 50 368 368 LEU LEU A . n A 1 51 TYR 51 369 369 TYR TYR A . n A 1 52 ASN 52 370 370 ASN ASN A . n A 1 53 LEU 53 371 371 LEU LEU A . n A 1 54 ALA 54 372 372 ALA ALA A . n A 1 55 PRO 55 373 373 PRO PRO A . n A 1 56 PHE 56 374 374 PHE PHE A . n A 1 57 PHE 57 375 375 PHE PHE A . n A 1 58 THR 58 376 376 THR THR A . n A 1 59 PHE 59 377 377 PHE PHE A . n A 1 60 LYS 60 378 378 LYS LYS A . n A 1 61 CYS 61 379 379 CYS CYS A . n A 1 62 TYR 62 380 380 TYR TYR A . n A 1 63 GLY 63 381 381 GLY GLY A . n A 1 64 VAL 64 382 382 VAL VAL A . n A 1 65 SER 65 383 383 SER SER A . n A 1 66 PRO 66 384 384 PRO PRO A . n A 1 67 THR 67 385 385 THR THR A . n A 1 68 LYS 68 386 386 LYS LYS A . n A 1 69 LEU 69 387 387 LEU LEU A . n A 1 70 ASN 70 388 388 ASN ASN A . n A 1 71 ASP 71 389 389 ASP ASP A . n A 1 72 LEU 72 390 390 LEU LEU A . n A 1 73 CYS 73 391 391 CYS CYS A . n A 1 74 PHE 74 392 392 PHE PHE A . n A 1 75 THR 75 393 393 THR THR A . n A 1 76 ASN 76 394 394 ASN ASN A . n A 1 77 VAL 77 395 395 VAL VAL A . n A 1 78 TYR 78 396 396 TYR TYR A . n A 1 79 ALA 79 397 397 ALA ALA A . n A 1 80 ASP 80 398 398 ASP ASP A . n A 1 81 SER 81 399 399 SER SER A . n A 1 82 PHE 82 400 400 PHE PHE A . n A 1 83 VAL 83 401 401 VAL VAL A . n A 1 84 ILE 84 402 402 ILE ILE A . n A 1 85 ARG 85 403 403 ARG ARG A . n A 1 86 GLY 86 404 404 GLY GLY A . n A 1 87 ASP 87 405 405 ASP ASP A . n A 1 88 GLU 88 406 406 GLU GLU A . n A 1 89 VAL 89 407 407 VAL VAL A . n A 1 90 ARG 90 408 408 ARG ARG A . n A 1 91 GLN 91 409 409 GLN GLN A . n A 1 92 ILE 92 410 410 ILE ILE A . n A 1 93 ALA 93 411 411 ALA ALA A . n A 1 94 PRO 94 412 412 PRO PRO A . n A 1 95 GLY 95 413 413 GLY GLY A . n A 1 96 GLN 96 414 414 GLN GLN A . n A 1 97 THR 97 415 415 THR THR A . n A 1 98 GLY 98 416 416 GLY GLY A . n A 1 99 ASN 99 417 417 ASN ASN A . n A 1 100 ILE 100 418 418 ILE ILE A . n A 1 101 ALA 101 419 419 ALA ALA A . n A 1 102 ASP 102 420 420 ASP ASP A . n A 1 103 TYR 103 421 421 TYR TYR A . n A 1 104 ASN 104 422 422 ASN ASN A . n A 1 105 TYR 105 423 423 TYR TYR A . n A 1 106 LYS 106 424 424 LYS LYS A . n A 1 107 LEU 107 425 425 LEU LEU A . n A 1 108 PRO 108 426 426 PRO PRO A . n A 1 109 ASP 109 427 427 ASP ASP A . n A 1 110 ASP 110 428 428 ASP ASP A . n A 1 111 PHE 111 429 429 PHE PHE A . n A 1 112 THR 112 430 430 THR THR A . n A 1 113 GLY 113 431 431 GLY GLY A . n A 1 114 CYS 114 432 432 CYS CYS A . n A 1 115 VAL 115 433 433 VAL VAL A . n A 1 116 ILE 116 434 434 ILE ILE A . n A 1 117 ALA 117 435 435 ALA ALA A . n A 1 118 TRP 118 436 436 TRP TRP A . n A 1 119 ASN 119 437 437 ASN ASN A . n A 1 120 SER 120 438 438 SER SER A . n A 1 121 ASN 121 439 439 ASN ASN A . n A 1 122 LYS 122 440 440 LYS LYS A . n A 1 123 LEU 123 441 441 LEU LEU A . n A 1 124 ASP 124 442 442 ASP ASP A . n A 1 125 SER 125 443 443 SER SER A . n A 1 126 LYS 126 444 444 LYS LYS A . n A 1 127 VAL 127 445 445 VAL VAL A . n A 1 128 SER 128 446 446 SER SER A . n A 1 129 GLY 129 447 447 GLY GLY A . n A 1 130 ASN 130 448 448 ASN ASN A . n A 1 131 TYR 131 449 449 TYR TYR A . n A 1 132 ASN 132 450 450 ASN ASN A . n A 1 133 TYR 133 451 451 TYR TYR A . n A 1 134 LEU 134 452 452 LEU LEU A . n A 1 135 TYR 135 453 453 TYR TYR A . n A 1 136 ARG 136 454 454 ARG ARG A . n A 1 137 LEU 137 455 455 LEU LEU A . n A 1 138 PHE 138 456 456 PHE PHE A . n A 1 139 ARG 139 457 457 ARG ARG A . n A 1 140 LYS 140 458 458 LYS LYS A . n A 1 141 SER 141 459 459 SER SER A . n A 1 142 ASN 142 460 460 ASN ASN A . n A 1 143 LEU 143 461 461 LEU LEU A . n A 1 144 LYS 144 462 462 LYS LYS A . n A 1 145 PRO 145 463 463 PRO PRO A . n A 1 146 PHE 146 464 464 PHE PHE A . n A 1 147 GLU 147 465 465 GLU GLU A . n A 1 148 ARG 148 466 466 ARG ARG A . n A 1 149 ASP 149 467 467 ASP ASP A . n A 1 150 ILE 150 468 468 ILE ILE A . n A 1 151 SER 151 469 469 SER SER A . n A 1 152 THR 152 470 470 THR THR A . n A 1 153 GLU 153 471 471 GLU GLU A . n A 1 154 ILE 154 472 472 ILE ILE A . n A 1 155 TYR 155 473 473 TYR TYR A . n A 1 156 GLN 156 474 474 GLN GLN A . n A 1 157 ALA 157 475 475 ALA ALA A . n A 1 158 GLY 158 476 476 GLY GLY A . n A 1 159 ASN 159 477 477 ASN ASN A . n A 1 160 LYS 160 478 478 LYS LYS A . n A 1 161 PRO 161 479 479 PRO PRO A . n A 1 162 CYS 162 480 480 CYS CYS A . n A 1 163 ASN 163 481 481 ASN ASN A . n A 1 164 GLY 164 482 482 GLY GLY A . n A 1 165 VAL 165 483 483 VAL VAL A . n A 1 166 ALA 166 484 484 ALA ALA A . n A 1 167 GLY 167 485 485 GLY GLY A . n A 1 168 PHE 168 486 486 PHE PHE A . n A 1 169 ASN 169 487 487 ASN ASN A . n A 1 170 CYS 170 488 488 CYS CYS A . n A 1 171 TYR 171 489 489 TYR TYR A . n A 1 172 PHE 172 490 490 PHE PHE A . n A 1 173 PRO 173 491 491 PRO PRO A . n A 1 174 LEU 174 492 492 LEU LEU A . n A 1 175 ARG 175 493 493 ARG ARG A . n A 1 176 SER 176 494 494 SER SER A . n A 1 177 TYR 177 495 495 TYR TYR A . n A 1 178 SER 178 496 496 SER SER A . n A 1 179 PHE 179 497 497 PHE PHE A . n A 1 180 ARG 180 498 498 ARG ARG A . n A 1 181 PRO 181 499 499 PRO PRO A . n A 1 182 THR 182 500 500 THR THR A . n A 1 183 TYR 183 501 501 TYR TYR A . n A 1 184 GLY 184 502 502 GLY GLY A . n A 1 185 VAL 185 503 503 VAL VAL A . n A 1 186 GLY 186 504 504 GLY GLY A . n A 1 187 HIS 187 505 505 HIS HIS A . n A 1 188 GLN 188 506 506 GLN GLN A . n A 1 189 PRO 189 507 507 PRO PRO A . n A 1 190 TYR 190 508 508 TYR TYR A . n A 1 191 ARG 191 509 509 ARG ARG A . n A 1 192 VAL 192 510 510 VAL VAL A . n A 1 193 VAL 193 511 511 VAL VAL A . n A 1 194 VAL 194 512 512 VAL VAL A . n A 1 195 LEU 195 513 513 LEU LEU A . n A 1 196 SER 196 514 514 SER SER A . n A 1 197 PHE 197 515 515 PHE PHE A . n A 1 198 GLU 198 516 516 GLU GLU A . n A 1 199 LEU 199 517 ? ? ? A . n A 1 200 LEU 200 518 ? ? ? A . n A 1 201 HIS 201 519 ? ? ? A . n A 1 202 ALA 202 520 ? ? ? A . n A 1 203 PRO 203 521 ? ? ? A . n A 1 204 ALA 204 522 ? ? ? A . n A 1 205 THR 205 523 ? ? ? A . n A 1 206 VAL 206 524 ? ? ? A . n A 1 207 CYS 207 525 ? ? ? A . n A 1 208 GLY 208 526 ? ? ? A . n A 1 209 PRO 209 527 ? ? ? A . n A 1 210 LYS 210 528 ? ? ? A . n A 1 211 LYS 211 529 ? ? ? A . n A 1 212 SER 212 530 ? ? ? A . n A 1 213 THR 213 531 ? ? ? A . n A 1 214 ASN 214 532 ? ? ? A . n A 1 215 LEU 215 533 ? ? ? A . n A 1 216 VAL 216 534 ? ? ? A . n A 1 217 LYS 217 535 ? ? ? A . n A 1 218 ASN 218 536 ? ? ? A . n A 1 219 LYS 219 537 ? ? ? A . n A 1 220 CYS 220 538 ? ? ? A . n A 1 221 VAL 221 539 ? ? ? A . n A 1 222 ASN 222 540 ? ? ? A . n A 1 223 PHE 223 541 ? ? ? A . n B 2 1 GLN 1 1 1 GLN GLN B . n B 2 2 VAL 2 2 2 VAL VAL B . n B 2 3 GLN 3 3 3 GLN GLN B . n B 2 4 LEU 4 4 4 LEU LEU B . n B 2 5 GLN 5 5 5 GLN GLN B . n B 2 6 GLU 6 6 6 GLU GLU B . n B 2 7 SER 7 7 7 SER SER B . n B 2 8 GLY 8 8 8 GLY GLY B . n B 2 9 PRO 9 9 9 PRO PRO B . n B 2 10 GLY 10 10 10 GLY GLY B . n B 2 11 LEU 11 11 11 LEU LEU B . n B 2 12 VAL 12 12 12 VAL VAL B . n B 2 13 LYS 13 13 13 LYS LYS B . n B 2 14 PRO 14 14 14 PRO PRO B . n B 2 15 SER 15 15 15 SER SER B . n B 2 16 GLU 16 16 16 GLU GLU B . n B 2 17 THR 17 17 17 THR THR B . n B 2 18 LEU 18 18 18 LEU LEU B . n B 2 19 SER 19 19 19 SER SER B . n B 2 20 LEU 20 20 20 LEU LEU B . n B 2 21 THR 21 21 21 THR THR B . n B 2 22 CYS 22 22 22 CYS CYS B . n B 2 23 THR 23 23 23 THR THR B . n B 2 24 VAL 24 24 24 VAL VAL B . n B 2 25 SER 25 25 25 SER SER B . n B 2 26 GLY 26 26 26 GLY GLY B . n B 2 27 GLY 27 27 27 GLY GLY B . n B 2 28 SER 28 28 28 SER SER B . n B 2 29 ILE 29 29 29 ILE ILE B . n B 2 30 SER 30 30 30 SER SER B . n B 2 31 SER 31 31 31 SER SER B . n B 2 32 TYR 32 32 32 TYR TYR B . n B 2 33 TYR 33 33 33 TYR TYR B . n B 2 34 TRP 34 34 34 TRP TRP B . n B 2 35 SER 35 35 35 SER SER B . n B 2 36 TRP 36 36 36 TRP TRP B . n B 2 37 ILE 37 37 37 ILE ILE B . n B 2 38 ARG 38 38 38 ARG ARG B . n B 2 39 GLN 39 39 39 GLN GLN B . n B 2 40 SER 40 40 40 SER SER B . n B 2 41 PRO 41 41 41 PRO PRO B . n B 2 42 GLY 42 42 42 GLY GLY B . n B 2 43 LYS 43 43 43 LYS LYS B . n B 2 44 GLY 44 44 44 GLY GLY B . n B 2 45 LEU 45 45 45 LEU LEU B . n B 2 46 GLU 46 46 46 GLU GLU B . n B 2 47 TRP 47 47 47 TRP TRP B . n B 2 48 ILE 48 48 48 ILE ILE B . n B 2 49 GLY 49 49 49 GLY GLY B . n B 2 50 TYR 50 50 50 TYR TYR B . n B 2 51 VAL 51 51 51 VAL VAL B . n B 2 52 TYR 52 52 52 TYR TYR B . n B 2 53 ASN 53 53 53 ASN ASN B . n B 2 54 SER 54 54 54 SER SER B . n B 2 55 GLY 55 55 55 GLY GLY B . n B 2 56 GLY 56 56 56 GLY GLY B . n B 2 57 THR 57 57 57 THR THR B . n B 2 58 ASN 58 58 58 ASN ASN B . n B 2 59 TYR 59 59 59 TYR TYR B . n B 2 60 ASN 60 60 60 ASN ASN B . n B 2 61 PRO 61 61 61 PRO PRO B . n B 2 62 SER 62 62 62 SER SER B . n B 2 63 LEU 63 63 63 LEU LEU B . n B 2 64 ARG 64 64 64 ARG ARG B . n B 2 65 SER 65 65 65 SER SER B . n B 2 66 ARG 66 66 66 ARG ARG B . n B 2 67 VAL 67 67 67 VAL VAL B . n B 2 68 THR 68 68 68 THR THR B . n B 2 69 ILE 69 69 69 ILE ILE B . n B 2 70 SER 70 70 70 SER SER B . n B 2 71 VAL 71 71 71 VAL VAL B . n B 2 72 ASP 72 72 72 ASP ASP B . n B 2 73 THR 73 73 73 THR THR B . n B 2 74 SER 74 74 74 SER SER B . n B 2 75 LYS 75 75 75 LYS LYS B . n B 2 76 ASN 76 76 76 ASN ASN B . n B 2 77 HIS 77 77 77 HIS HIS B . n B 2 78 PHE 78 78 78 PHE PHE B . n B 2 79 SER 79 79 79 SER SER B . n B 2 80 LEU 80 80 80 LEU LEU B . n B 2 81 LYS 81 81 81 LYS LYS B . n B 2 82 LEU 82 82 82 LEU LEU B . n B 2 83 ARG 83 83 83 ARG ARG B . n B 2 84 SER 84 84 84 SER SER B . n B 2 85 VAL 85 85 85 VAL VAL B . n B 2 86 THR 86 86 86 THR THR B . n B 2 87 THR 87 87 87 THR THR B . n B 2 88 ALA 88 88 88 ALA ALA B . n B 2 89 ASP 89 89 89 ASP ASP B . n B 2 90 THR 90 90 90 THR THR B . n B 2 91 GLY 91 91 91 GLY GLY B . n B 2 92 VAL 92 92 92 VAL VAL B . n B 2 93 TYR 93 93 93 TYR TYR B . n B 2 94 TYR 94 94 94 TYR TYR B . n B 2 95 CYS 95 95 95 CYS CYS B . n B 2 96 ALA 96 96 96 ALA ALA B . n B 2 97 ARG 97 97 97 ARG ARG B . n B 2 98 ASP 98 98 98 ASP ASP B . n B 2 99 LEU 99 99 99 LEU LEU B . n B 2 100 GLY 100 100 100 GLY GLY B . n B 2 101 TYR 101 101 101 TYR TYR B . n B 2 102 SER 102 102 102 SER SER B . n B 2 103 SER 103 103 103 SER SER B . n B 2 104 GLY 104 104 104 GLY GLY B . n B 2 105 TRP 105 105 105 TRP TRP B . n B 2 106 PRO 106 106 106 PRO PRO B . n B 2 107 ASP 107 107 107 ASP ASP B . n B 2 108 ALA 108 108 108 ALA ALA B . n B 2 109 PHE 109 109 109 PHE PHE B . n B 2 110 ASP 110 110 110 ASP ASP B . n B 2 111 ILE 111 111 111 ILE ILE B . n B 2 112 TRP 112 112 112 TRP TRP B . n B 2 113 GLY 113 113 113 GLY GLY B . n B 2 114 GLN 114 114 114 GLN GLN B . n B 2 115 GLY 115 115 115 GLY GLY B . n B 2 116 LYS 116 116 116 LYS LYS B . n B 2 117 MET 117 117 117 MET MET B . n B 2 118 VAL 118 118 118 VAL VAL B . n B 2 119 THR 119 119 119 THR THR B . n B 2 120 VAL 120 120 120 VAL VAL B . n B 2 121 SER 121 121 121 SER SER B . n B 2 122 ALA 122 122 ? ? ? B . n C 3 1 GLU 1 1 1 GLU GLU C . n C 3 2 ILE 2 2 2 ILE ILE C . n C 3 3 VAL 3 3 3 VAL VAL C . n C 3 4 LEU 4 4 4 LEU LEU C . n C 3 5 THR 5 5 5 THR THR C . n C 3 6 GLN 6 6 6 GLN GLN C . n C 3 7 SER 7 7 7 SER SER C . n C 3 8 PRO 8 8 8 PRO PRO C . n C 3 9 ALA 9 9 9 ALA ALA C . n C 3 10 THR 10 10 10 THR THR C . n C 3 11 LEU 11 11 11 LEU LEU C . n C 3 12 SER 12 12 12 SER SER C . n C 3 13 LEU 13 13 13 LEU LEU C . n C 3 14 SER 14 14 14 SER SER C . n C 3 15 PRO 15 15 15 PRO PRO C . n C 3 16 GLY 16 16 16 GLY GLY C . n C 3 17 GLU 17 17 17 GLU GLU C . n C 3 18 ARG 18 18 18 ARG ARG C . n C 3 19 ALA 19 19 19 ALA ALA C . n C 3 20 THR 20 20 20 THR THR C . n C 3 21 LEU 21 21 21 LEU LEU C . n C 3 22 SER 22 22 22 SER SER C . n C 3 23 CYS 23 23 23 CYS CYS C . n C 3 24 THR 24 24 24 THR THR C . n C 3 25 ALA 25 25 25 ALA ALA C . n C 3 26 SER 26 26 26 SER SER C . n C 3 27 GLN 27 27 27 GLN GLN C . n C 3 28 SER 28 28 28 SER SER C . n C 3 29 VAL 29 29 29 VAL VAL C . n C 3 30 PHE 30 30 30 PHE PHE C . n C 3 31 SER 31 31 31 SER SER C . n C 3 32 TYR 32 32 32 TYR TYR C . n C 3 33 LEU 33 33 33 LEU LEU C . n C 3 34 ALA 34 34 34 ALA ALA C . n C 3 35 TRP 35 35 35 TRP TRP C . n C 3 36 TYR 36 36 36 TYR TYR C . n C 3 37 GLN 37 37 37 GLN GLN C . n C 3 38 GLN 38 38 38 GLN GLN C . n C 3 39 LYS 39 39 39 LYS LYS C . n C 3 40 PRO 40 40 40 PRO PRO C . n C 3 41 GLY 41 41 41 GLY GLY C . n C 3 42 GLN 42 42 42 GLN GLN C . n C 3 43 ALA 43 43 43 ALA ALA C . n C 3 44 PRO 44 44 44 PRO PRO C . n C 3 45 ARG 45 45 45 ARG ARG C . n C 3 46 LEU 46 46 46 LEU LEU C . n C 3 47 LEU 47 47 47 LEU LEU C . n C 3 48 ILE 48 48 48 ILE ILE C . n C 3 49 TYR 49 49 49 TYR TYR C . n C 3 50 GLY 50 50 50 GLY GLY C . n C 3 51 ALA 51 51 51 ALA ALA C . n C 3 52 PHE 52 52 52 PHE PHE C . n C 3 53 ASN 53 53 53 ASN ASN C . n C 3 54 ARG 54 54 54 ARG ARG C . n C 3 55 ALA 55 55 55 ALA ALA C . n C 3 56 THR 56 56 56 THR THR C . n C 3 57 GLY 57 57 57 GLY GLY C . n C 3 58 ILE 58 58 58 ILE ILE C . n C 3 59 PRO 59 59 59 PRO PRO C . n C 3 60 ALA 60 60 60 ALA ALA C . n C 3 61 ARG 61 61 61 ARG ARG C . n C 3 62 PHE 62 62 62 PHE PHE C . n C 3 63 SER 63 63 63 SER SER C . n C 3 64 GLY 64 64 64 GLY GLY C . n C 3 65 SER 65 65 65 SER SER C . n C 3 66 GLY 66 66 66 GLY GLY C . n C 3 67 SER 67 67 67 SER SER C . n C 3 68 GLU 68 68 68 GLU GLU C . n C 3 69 THR 69 69 69 THR THR C . n C 3 70 ASP 70 70 70 ASP ASP C . n C 3 71 PHE 71 71 71 PHE PHE C . n C 3 72 THR 72 72 72 THR THR C . n C 3 73 LEU 73 73 73 LEU LEU C . n C 3 74 THR 74 74 74 THR THR C . n C 3 75 ILE 75 75 75 ILE ILE C . n C 3 76 SER 76 76 76 SER SER C . n C 3 77 SER 77 77 77 SER SER C . n C 3 78 LEU 78 78 78 LEU LEU C . n C 3 79 GLU 79 79 79 GLU GLU C . n C 3 80 PRO 80 80 80 PRO PRO C . n C 3 81 GLU 81 81 81 GLU GLU C . n C 3 82 ASP 82 82 82 ASP ASP C . n C 3 83 PHE 83 83 83 PHE PHE C . n C 3 84 ALA 84 84 84 ALA ALA C . n C 3 85 VAL 85 85 85 VAL VAL C . n C 3 86 TYR 86 86 86 TYR TYR C . n C 3 87 TYR 87 87 87 TYR TYR C . n C 3 88 CYS 88 88 88 CYS CYS C . n C 3 89 GLN 89 89 89 GLN GLN C . n C 3 90 GLN 90 90 90 GLN GLN C . n C 3 91 HIS 91 91 91 HIS HIS C . n C 3 92 SER 92 92 92 SER SER C . n C 3 93 ASN 93 93 93 ASN ASN C . n C 3 94 TRP 94 94 94 TRP TRP C . n C 3 95 PRO 95 95 95 PRO PRO C . n C 3 96 GLY 96 96 96 GLY GLY C . n C 3 97 THR 97 97 97 THR THR C . n C 3 98 PHE 98 98 98 PHE PHE C . n C 3 99 GLY 99 99 99 GLY GLY C . n C 3 100 GLN 100 100 100 GLN GLN C . n C 3 101 GLY 101 101 101 GLY GLY C . n C 3 102 THR 102 102 102 THR THR C . n C 3 103 LYS 103 103 103 LYS LYS C . n C 3 104 VAL 104 104 104 VAL VAL C . n C 3 105 GLU 105 105 105 GLU GLU C . n C 3 106 ILE 106 106 106 ILE ILE C . n C 3 107 LYS 107 107 ? ? ? C . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8XRQ _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 8XRQ _struct.title 'SARS-CoV-2 BA.1 spike RBD in complex bound with VacBB-639' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8XRQ _struct_keywords.text 'Antibody, VIRAL PROTEIN-IMMUNE SYSTEM COMPLEX, PROTEIN BINDING' _struct_keywords.pdbx_keywords 'PROTEIN BINDING' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP SPIKE_SARS2 P0DTC2 ? 1 ;RVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYAD SFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGST PCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNF ; 319 2 PDB 8XRQ 8XRQ ? 2 ? 1 3 PDB 8XRQ 8XRQ ? 3 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8XRQ A 1 ? 223 ? P0DTC2 319 ? 541 ? 319 541 2 2 8XRQ B 1 ? 122 ? 8XRQ 1 ? 122 ? 1 122 3 3 8XRQ C 1 ? 107 ? 8XRQ 1 ? 107 ? 1 107 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 8XRQ ASP A 21 ? UNP P0DTC2 GLY 339 variant 339 1 1 8XRQ LEU A 53 ? UNP P0DTC2 SER 371 variant 371 2 1 8XRQ PRO A 55 ? UNP P0DTC2 SER 373 variant 373 3 1 8XRQ PHE A 57 ? UNP P0DTC2 SER 375 variant 375 4 1 8XRQ ASN A 99 ? UNP P0DTC2 LYS 417 variant 417 5 1 8XRQ LYS A 122 ? UNP P0DTC2 ASN 440 variant 440 6 1 8XRQ SER A 128 ? UNP P0DTC2 GLY 446 variant 446 7 1 8XRQ ASN A 159 ? UNP P0DTC2 SER 477 variant 477 8 1 8XRQ LYS A 160 ? UNP P0DTC2 THR 478 variant 478 9 1 8XRQ ALA A 166 ? UNP P0DTC2 GLU 484 variant 484 10 1 8XRQ ARG A 175 ? UNP P0DTC2 GLN 493 variant 493 11 1 8XRQ SER A 178 ? UNP P0DTC2 GLY 496 variant 496 12 1 8XRQ ARG A 180 ? UNP P0DTC2 GLN 498 variant 498 13 1 8XRQ TYR A 183 ? UNP P0DTC2 ASN 501 variant 501 14 1 8XRQ HIS A 187 ? UNP P0DTC2 TYR 505 variant 505 15 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 TYR A 47 ? LEU A 53 ? TYR A 365 LEU A 371 1 ? 7 HELX_P HELX_P2 AA2 ASP A 87 ? ALA A 93 ? ASP A 405 ALA A 411 5 ? 7 HELX_P HELX_P3 AA3 GLY A 98 ? TYR A 103 ? GLY A 416 TYR A 421 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 61 SG ? ? ? 1_555 A CYS 114 SG ? ? A CYS 379 A CYS 432 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf2 disulf ? ? A CYS 162 SG ? ? ? 1_555 A CYS 170 SG ? ? A CYS 480 A CYS 488 1_555 ? ? ? ? ? ? ? 2.033 ? ? disulf3 disulf ? ? B CYS 22 SG ? ? ? 1_555 B CYS 95 SG ? ? B CYS 22 B CYS 95 1_555 ? ? ? ? ? ? ? 2.037 ? ? disulf4 disulf ? ? C CYS 23 SG ? ? ? 1_555 C CYS 88 SG ? ? C CYS 23 C CYS 88 1_555 ? ? ? ? ? ? ? 2.035 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_modification_feature.ordinal _pdbx_modification_feature.label_comp_id _pdbx_modification_feature.label_asym_id _pdbx_modification_feature.label_seq_id _pdbx_modification_feature.label_alt_id _pdbx_modification_feature.modified_residue_label_comp_id _pdbx_modification_feature.modified_residue_label_asym_id _pdbx_modification_feature.modified_residue_label_seq_id _pdbx_modification_feature.modified_residue_label_alt_id _pdbx_modification_feature.auth_comp_id _pdbx_modification_feature.auth_asym_id _pdbx_modification_feature.auth_seq_id _pdbx_modification_feature.PDB_ins_code _pdbx_modification_feature.symmetry _pdbx_modification_feature.modified_residue_auth_comp_id _pdbx_modification_feature.modified_residue_auth_asym_id _pdbx_modification_feature.modified_residue_auth_seq_id _pdbx_modification_feature.modified_residue_PDB_ins_code _pdbx_modification_feature.modified_residue_symmetry _pdbx_modification_feature.comp_id_linking_atom _pdbx_modification_feature.modified_residue_id_linking_atom _pdbx_modification_feature.modified_residue_id _pdbx_modification_feature.ref_pcm_id _pdbx_modification_feature.ref_comp_id _pdbx_modification_feature.type _pdbx_modification_feature.category 1 CYS A 61 ? CYS A 114 ? CYS A 379 ? 1_555 CYS A 432 ? 1_555 SG SG . . . None 'Disulfide bridge' 2 CYS A 162 ? CYS A 170 ? CYS A 480 ? 1_555 CYS A 488 ? 1_555 SG SG . . . None 'Disulfide bridge' 3 CYS B 22 ? CYS B 95 ? CYS B 22 ? 1_555 CYS B 95 ? 1_555 SG SG . . . None 'Disulfide bridge' 4 CYS C 23 ? CYS C 88 ? CYS C 23 ? 1_555 CYS C 88 ? 1_555 SG SG . . . None 'Disulfide bridge' # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ALA 54 A . ? ALA 372 A PRO 55 A ? PRO 373 A 1 -2.66 2 SER 7 C . ? SER 7 C PRO 8 C ? PRO 8 C 1 -1.49 3 TRP 94 C . ? TRP 94 C PRO 95 C ? PRO 95 C 1 -4.11 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 5 ? AA2 ? 4 ? AA3 ? 2 ? AA4 ? 2 ? AA5 ? 5 ? AA6 ? 2 ? AA7 ? 2 ? AA8 ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? anti-parallel AA1 4 5 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA3 1 2 ? anti-parallel AA4 1 2 ? anti-parallel AA5 1 2 ? anti-parallel AA5 2 3 ? anti-parallel AA5 3 4 ? anti-parallel AA5 4 5 ? anti-parallel AA6 1 2 ? anti-parallel AA7 1 2 ? anti-parallel AA8 1 2 ? anti-parallel AA8 2 3 ? anti-parallel AA8 3 4 ? anti-parallel AA8 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ARG A 39 ? ILE A 40 ? ARG A 357 ILE A 358 AA1 2 VAL A 77 ? ALA A 79 ? VAL A 395 ALA A 397 AA1 3 PRO A 189 ? PHE A 197 ? PRO A 507 PHE A 515 AA1 4 GLY A 113 ? ASN A 119 ? GLY A 431 ASN A 437 AA1 5 CYS A 61 ? TYR A 62 ? CYS A 379 TYR A 380 AA2 1 ARG A 39 ? ILE A 40 ? ARG A 357 ILE A 358 AA2 2 VAL A 77 ? ALA A 79 ? VAL A 395 ALA A 397 AA2 3 PRO A 189 ? PHE A 197 ? PRO A 507 PHE A 515 AA2 4 PHE A 82 ? ARG A 85 ? PHE A 400 ARG A 403 AA3 1 LEU A 134 ? TYR A 135 ? LEU A 452 TYR A 453 AA3 2 ARG A 175 ? SER A 176 ? ARG A 493 SER A 494 AA4 1 TYR A 155 ? GLN A 156 ? TYR A 473 GLN A 474 AA4 2 CYS A 170 ? TYR A 171 ? CYS A 488 TYR A 489 AA5 1 THR B 57 ? TYR B 59 ? THR B 57 TYR B 59 AA5 2 GLU B 46 ? VAL B 51 ? GLU B 46 VAL B 51 AA5 3 TRP B 34 ? GLN B 39 ? TRP B 34 GLN B 39 AA5 4 VAL B 92 ? ASP B 98 ? VAL B 92 ASP B 98 AA5 5 PHE B 109 ? TRP B 112 ? PHE B 109 TRP B 112 AA6 1 THR B 68 ? ILE B 69 ? THR B 68 ILE B 69 AA6 2 LEU B 80 ? LYS B 81 ? LEU B 80 LYS B 81 AA7 1 ALA C 19 ? LEU C 21 ? ALA C 19 LEU C 21 AA7 2 LEU C 73 ? ILE C 75 ? LEU C 73 ILE C 75 AA8 1 ASN C 53 ? ARG C 54 ? ASN C 53 ARG C 54 AA8 2 ARG C 45 ? TYR C 49 ? ARG C 45 TYR C 49 AA8 3 LEU C 33 ? GLN C 38 ? LEU C 33 GLN C 38 AA8 4 VAL C 85 ? GLN C 90 ? VAL C 85 GLN C 90 AA8 5 THR C 97 ? PHE C 98 ? THR C 97 PHE C 98 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N ILE A 40 ? N ILE A 358 O VAL A 77 ? O VAL A 395 AA1 2 3 N TYR A 78 ? N TYR A 396 O SER A 196 ? O SER A 514 AA1 3 4 O VAL A 193 ? O VAL A 511 N ILE A 116 ? N ILE A 434 AA1 4 5 O GLY A 113 ? O GLY A 431 N TYR A 62 ? N TYR A 380 AA2 1 2 N ILE A 40 ? N ILE A 358 O VAL A 77 ? O VAL A 395 AA2 2 3 N TYR A 78 ? N TYR A 396 O SER A 196 ? O SER A 514 AA2 3 4 O TYR A 190 ? O TYR A 508 N ILE A 84 ? N ILE A 402 AA3 1 2 N TYR A 135 ? N TYR A 453 O ARG A 175 ? O ARG A 493 AA4 1 2 N TYR A 155 ? N TYR A 473 O TYR A 171 ? O TYR A 489 AA5 1 2 O ASN B 58 ? O ASN B 58 N TYR B 50 ? N TYR B 50 AA5 2 3 O VAL B 51 ? O VAL B 51 N TRP B 34 ? N TRP B 34 AA5 3 4 N SER B 35 ? N SER B 35 O ALA B 96 ? O ALA B 96 AA5 4 5 N ARG B 97 ? N ARG B 97 O ASP B 110 ? O ASP B 110 AA6 1 2 N THR B 68 ? N THR B 68 O LYS B 81 ? O LYS B 81 AA7 1 2 N LEU C 21 ? N LEU C 21 O LEU C 73 ? O LEU C 73 AA8 1 2 O ASN C 53 ? O ASN C 53 N TYR C 49 ? N TYR C 49 AA8 2 3 O LEU C 47 ? O LEU C 47 N TRP C 35 ? N TRP C 35 AA8 3 4 N TYR C 36 ? N TYR C 36 O TYR C 87 ? O TYR C 87 AA8 4 5 N GLN C 90 ? N GLN C 90 O THR C 97 ? O THR C 97 # _pdbx_entry_details.entry_id 8XRQ _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER B 28 ? ? 72.79 136.39 2 1 SER B 30 ? ? 59.62 -124.61 3 1 PRO B 41 ? ? -56.67 174.70 4 1 ILE B 48 ? ? -90.88 -60.81 5 1 SER B 54 ? ? -125.45 -168.36 6 1 ARG B 64 ? ? -121.19 -51.00 7 1 SER B 103 ? ? -113.96 -168.95 8 1 ASP B 107 ? ? -131.70 -31.01 9 1 PRO C 8 ? ? -87.81 -157.59 10 1 ARG C 18 ? ? -57.50 176.41 11 1 GLN C 27 ? ? -103.40 -67.45 12 1 SER C 28 ? ? -167.44 116.64 13 1 PHE C 30 ? ? 54.27 -100.32 14 1 SER C 31 ? ? -141.85 44.08 15 1 PRO C 44 ? ? -68.55 -179.17 16 1 ALA C 51 ? ? 75.75 -6.01 17 1 PRO C 59 ? ? -67.76 -174.99 18 1 SER C 67 ? ? -142.90 46.90 19 1 GLU C 68 ? ? 67.11 -20.66 20 1 THR C 69 ? ? -143.06 -17.40 21 1 PRO C 80 ? ? -47.75 -12.96 22 1 GLU C 81 ? ? -121.73 -166.53 23 1 SER C 92 ? ? -149.40 -35.81 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 8XRQ _em_3d_fitting.method ? _em_3d_fitting.target_criteria 'Correlation coefficient' _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space REAL _em_3d_fitting.ref_protocol 'RIGID BODY FIT' # _em_3d_fitting_list.id 1 _em_3d_fitting_list.3d_fitting_id 1 _em_3d_fitting_list.pdb_entry_id . _em_3d_fitting_list.pdb_chain_id . _em_3d_fitting_list.pdb_chain_residue_range . _em_3d_fitting_list.details ? _em_3d_fitting_list.chain_id ? _em_3d_fitting_list.chain_residue_range ? _em_3d_fitting_list.source_name AlphaFold _em_3d_fitting_list.type 'in silico model' _em_3d_fitting_list.accession_code ? _em_3d_fitting_list.initial_refinement_model_id ? # _em_3d_reconstruction.entry_id 8XRQ _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 4.19 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 104464 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type POINT # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details PBS _em_buffer.pH 7.0 # loop_ _em_entity_assembly.id _em_entity_assembly.parent_id _em_entity_assembly.source _em_entity_assembly.type _em_entity_assembly.name _em_entity_assembly.details _em_entity_assembly.synonym _em_entity_assembly.oligomeric_details _em_entity_assembly.entity_id_list 1 0 RECOMBINANT COMPLEX 'Complex of SARS-COV-2 spike RBD and VacBB-639' ? ? ? '1, 2, 3' 2 1 RECOMBINANT COMPLEX 'SARS-COV-2 spike RBD' ? ? ? 1 3 1 RECOMBINANT COMPLEX VacBB-639 ? ? ? 2,3 # _em_image_scans.entry_id 8XRQ _em_image_scans.id 1 _em_image_scans.number_digital_images ? _em_image_scans.details ? _em_image_scans.scanner_model ? _em_image_scans.sampling_size ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.citation_id ? _em_image_scans.dimension_height 4092 _em_image_scans.dimension_width 5760 _em_image_scans.frames_per_image ? _em_image_scans.image_recording_id 1 _em_image_scans.used_frames_per_image ? # _em_imaging.entry_id 8XRQ _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_min 1500 _em_imaging.nominal_defocus_max 2500 _em_imaging.calibrated_defocus_min 1500 _em_imaging.calibrated_defocus_max 2500 _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification 105000 _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum 90 _em_imaging.recording_temperature_maximum 90 _em_imaging.alignment_procedure 'COMA FREE' _em_imaging.c2_aperture_diameter 70 _em_imaging.specimen_id 1 _em_imaging.cryogen NITROGEN # _em_sample_support.id 1 _em_sample_support.film_material ? _em_sample_support.method ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size ? _em_sample_support.grid_type 'Quantifoil R1.2/1.3' _em_sample_support.details ? _em_sample_support.specimen_id 1 _em_sample_support.citation_id ? # _em_vitrification.entry_id 8XRQ _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity 100 _em_vitrification.temp ? _em_vitrification.chamber_temperature 277 _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details 'blot for 5s, wait for 2s, blot force:0' # _em_experiment.entry_id 8XRQ _em_experiment.id 1 _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.aggregation_state PARTICLE _em_experiment.entity_assembly_id 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ARG 319 ? A ARG 1 2 1 Y 1 A VAL 320 ? A VAL 2 3 1 Y 1 A GLN 321 ? A GLN 3 4 1 Y 1 A PRO 322 ? A PRO 4 5 1 Y 1 A THR 323 ? A THR 5 6 1 Y 1 A GLU 324 ? A GLU 6 7 1 Y 1 A SER 325 ? A SER 7 8 1 Y 1 A ILE 326 ? A ILE 8 9 1 Y 1 A VAL 327 ? A VAL 9 10 1 Y 1 A ARG 328 ? A ARG 10 11 1 Y 1 A PHE 329 ? A PHE 11 12 1 Y 1 A PRO 330 ? A PRO 12 13 1 Y 1 A ASN 331 ? A ASN 13 14 1 Y 1 A ILE 332 ? A ILE 14 15 1 Y 1 A THR 333 ? A THR 15 16 1 Y 1 A ASN 334 ? A ASN 16 17 1 Y 1 A LEU 335 ? A LEU 17 18 1 Y 1 A CYS 336 ? A CYS 18 19 1 Y 1 A LEU 517 ? A LEU 199 20 1 Y 1 A LEU 518 ? A LEU 200 21 1 Y 1 A HIS 519 ? A HIS 201 22 1 Y 1 A ALA 520 ? A ALA 202 23 1 Y 1 A PRO 521 ? A PRO 203 24 1 Y 1 A ALA 522 ? A ALA 204 25 1 Y 1 A THR 523 ? A THR 205 26 1 Y 1 A VAL 524 ? A VAL 206 27 1 Y 1 A CYS 525 ? A CYS 207 28 1 Y 1 A GLY 526 ? A GLY 208 29 1 Y 1 A PRO 527 ? A PRO 209 30 1 Y 1 A LYS 528 ? A LYS 210 31 1 Y 1 A LYS 529 ? A LYS 211 32 1 Y 1 A SER 530 ? A SER 212 33 1 Y 1 A THR 531 ? A THR 213 34 1 Y 1 A ASN 532 ? A ASN 214 35 1 Y 1 A LEU 533 ? A LEU 215 36 1 Y 1 A VAL 534 ? A VAL 216 37 1 Y 1 A LYS 535 ? A LYS 217 38 1 Y 1 A ASN 536 ? A ASN 218 39 1 Y 1 A LYS 537 ? A LYS 219 40 1 Y 1 A CYS 538 ? A CYS 220 41 1 Y 1 A VAL 539 ? A VAL 221 42 1 Y 1 A ASN 540 ? A ASN 222 43 1 Y 1 A PHE 541 ? A PHE 223 44 1 Y 1 B ALA 122 ? B ALA 122 45 1 Y 1 C LYS 107 ? C LYS 107 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 PHE N N N N 247 PHE CA C N S 248 PHE C C N N 249 PHE O O N N 250 PHE CB C N N 251 PHE CG C Y N 252 PHE CD1 C Y N 253 PHE CD2 C Y N 254 PHE CE1 C Y N 255 PHE CE2 C Y N 256 PHE CZ C Y N 257 PHE OXT O N N 258 PHE H H N N 259 PHE H2 H N N 260 PHE HA H N N 261 PHE HB2 H N N 262 PHE HB3 H N N 263 PHE HD1 H N N 264 PHE HD2 H N N 265 PHE HE1 H N N 266 PHE HE2 H N N 267 PHE HZ H N N 268 PHE HXT H N N 269 PRO N N N N 270 PRO CA C N S 271 PRO C C N N 272 PRO O O N N 273 PRO CB C N N 274 PRO CG C N N 275 PRO CD C N N 276 PRO OXT O N N 277 PRO H H N N 278 PRO HA H N N 279 PRO HB2 H N N 280 PRO HB3 H N N 281 PRO HG2 H N N 282 PRO HG3 H N N 283 PRO HD2 H N N 284 PRO HD3 H N N 285 PRO HXT H N N 286 SER N N N N 287 SER CA C N S 288 SER C C N N 289 SER O O N N 290 SER CB C N N 291 SER OG O N N 292 SER OXT O N N 293 SER H H N N 294 SER H2 H N N 295 SER HA H N N 296 SER HB2 H N N 297 SER HB3 H N N 298 SER HG H N N 299 SER HXT H N N 300 THR N N N N 301 THR CA C N S 302 THR C C N N 303 THR O O N N 304 THR CB C N R 305 THR OG1 O N N 306 THR CG2 C N N 307 THR OXT O N N 308 THR H H N N 309 THR H2 H N N 310 THR HA H N N 311 THR HB H N N 312 THR HG1 H N N 313 THR HG21 H N N 314 THR HG22 H N N 315 THR HG23 H N N 316 THR HXT H N N 317 TRP N N N N 318 TRP CA C N S 319 TRP C C N N 320 TRP O O N N 321 TRP CB C N N 322 TRP CG C Y N 323 TRP CD1 C Y N 324 TRP CD2 C Y N 325 TRP NE1 N Y N 326 TRP CE2 C Y N 327 TRP CE3 C Y N 328 TRP CZ2 C Y N 329 TRP CZ3 C Y N 330 TRP CH2 C Y N 331 TRP OXT O N N 332 TRP H H N N 333 TRP H2 H N N 334 TRP HA H N N 335 TRP HB2 H N N 336 TRP HB3 H N N 337 TRP HD1 H N N 338 TRP HE1 H N N 339 TRP HE3 H N N 340 TRP HZ2 H N N 341 TRP HZ3 H N N 342 TRP HH2 H N N 343 TRP HXT H N N 344 TYR N N N N 345 TYR CA C N S 346 TYR C C N N 347 TYR O O N N 348 TYR CB C N N 349 TYR CG C Y N 350 TYR CD1 C Y N 351 TYR CD2 C Y N 352 TYR CE1 C Y N 353 TYR CE2 C Y N 354 TYR CZ C Y N 355 TYR OH O N N 356 TYR OXT O N N 357 TYR H H N N 358 TYR H2 H N N 359 TYR HA H N N 360 TYR HB2 H N N 361 TYR HB3 H N N 362 TYR HD1 H N N 363 TYR HD2 H N N 364 TYR HE1 H N N 365 TYR HE2 H N N 366 TYR HH H N N 367 TYR HXT H N N 368 VAL N N N N 369 VAL CA C N S 370 VAL C C N N 371 VAL O O N N 372 VAL CB C N N 373 VAL CG1 C N N 374 VAL CG2 C N N 375 VAL OXT O N N 376 VAL H H N N 377 VAL H2 H N N 378 VAL HA H N N 379 VAL HB H N N 380 VAL HG11 H N N 381 VAL HG12 H N N 382 VAL HG13 H N N 383 VAL HG21 H N N 384 VAL HG22 H N N 385 VAL HG23 H N N 386 VAL HXT H N N 387 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 PHE N CA sing N N 235 PHE N H sing N N 236 PHE N H2 sing N N 237 PHE CA C sing N N 238 PHE CA CB sing N N 239 PHE CA HA sing N N 240 PHE C O doub N N 241 PHE C OXT sing N N 242 PHE CB CG sing N N 243 PHE CB HB2 sing N N 244 PHE CB HB3 sing N N 245 PHE CG CD1 doub Y N 246 PHE CG CD2 sing Y N 247 PHE CD1 CE1 sing Y N 248 PHE CD1 HD1 sing N N 249 PHE CD2 CE2 doub Y N 250 PHE CD2 HD2 sing N N 251 PHE CE1 CZ doub Y N 252 PHE CE1 HE1 sing N N 253 PHE CE2 CZ sing Y N 254 PHE CE2 HE2 sing N N 255 PHE CZ HZ sing N N 256 PHE OXT HXT sing N N 257 PRO N CA sing N N 258 PRO N CD sing N N 259 PRO N H sing N N 260 PRO CA C sing N N 261 PRO CA CB sing N N 262 PRO CA HA sing N N 263 PRO C O doub N N 264 PRO C OXT sing N N 265 PRO CB CG sing N N 266 PRO CB HB2 sing N N 267 PRO CB HB3 sing N N 268 PRO CG CD sing N N 269 PRO CG HG2 sing N N 270 PRO CG HG3 sing N N 271 PRO CD HD2 sing N N 272 PRO CD HD3 sing N N 273 PRO OXT HXT sing N N 274 SER N CA sing N N 275 SER N H sing N N 276 SER N H2 sing N N 277 SER CA C sing N N 278 SER CA CB sing N N 279 SER CA HA sing N N 280 SER C O doub N N 281 SER C OXT sing N N 282 SER CB OG sing N N 283 SER CB HB2 sing N N 284 SER CB HB3 sing N N 285 SER OG HG sing N N 286 SER OXT HXT sing N N 287 THR N CA sing N N 288 THR N H sing N N 289 THR N H2 sing N N 290 THR CA C sing N N 291 THR CA CB sing N N 292 THR CA HA sing N N 293 THR C O doub N N 294 THR C OXT sing N N 295 THR CB OG1 sing N N 296 THR CB CG2 sing N N 297 THR CB HB sing N N 298 THR OG1 HG1 sing N N 299 THR CG2 HG21 sing N N 300 THR CG2 HG22 sing N N 301 THR CG2 HG23 sing N N 302 THR OXT HXT sing N N 303 TRP N CA sing N N 304 TRP N H sing N N 305 TRP N H2 sing N N 306 TRP CA C sing N N 307 TRP CA CB sing N N 308 TRP CA HA sing N N 309 TRP C O doub N N 310 TRP C OXT sing N N 311 TRP CB CG sing N N 312 TRP CB HB2 sing N N 313 TRP CB HB3 sing N N 314 TRP CG CD1 doub Y N 315 TRP CG CD2 sing Y N 316 TRP CD1 NE1 sing Y N 317 TRP CD1 HD1 sing N N 318 TRP CD2 CE2 doub Y N 319 TRP CD2 CE3 sing Y N 320 TRP NE1 CE2 sing Y N 321 TRP NE1 HE1 sing N N 322 TRP CE2 CZ2 sing Y N 323 TRP CE3 CZ3 doub Y N 324 TRP CE3 HE3 sing N N 325 TRP CZ2 CH2 doub Y N 326 TRP CZ2 HZ2 sing N N 327 TRP CZ3 CH2 sing Y N 328 TRP CZ3 HZ3 sing N N 329 TRP CH2 HH2 sing N N 330 TRP OXT HXT sing N N 331 TYR N CA sing N N 332 TYR N H sing N N 333 TYR N H2 sing N N 334 TYR CA C sing N N 335 TYR CA CB sing N N 336 TYR CA HA sing N N 337 TYR C O doub N N 338 TYR C OXT sing N N 339 TYR CB CG sing N N 340 TYR CB HB2 sing N N 341 TYR CB HB3 sing N N 342 TYR CG CD1 doub Y N 343 TYR CG CD2 sing Y N 344 TYR CD1 CE1 sing Y N 345 TYR CD1 HD1 sing N N 346 TYR CD2 CE2 doub Y N 347 TYR CD2 HD2 sing N N 348 TYR CE1 CZ doub Y N 349 TYR CE1 HE1 sing N N 350 TYR CE2 CZ sing Y N 351 TYR CE2 HE2 sing N N 352 TYR CZ OH sing N N 353 TYR OH HH sing N N 354 TYR OXT HXT sing N N 355 VAL N CA sing N N 356 VAL N H sing N N 357 VAL N H2 sing N N 358 VAL CA C sing N N 359 VAL CA CB sing N N 360 VAL CA HA sing N N 361 VAL C O doub N N 362 VAL C OXT sing N N 363 VAL CB CG1 sing N N 364 VAL CB CG2 sing N N 365 VAL CB HB sing N N 366 VAL CG1 HG11 sing N N 367 VAL CG1 HG12 sing N N 368 VAL CG1 HG13 sing N N 369 VAL CG2 HG21 sing N N 370 VAL CG2 HG22 sing N N 371 VAL CG2 HG23 sing N N 372 VAL OXT HXT sing N N 373 # _em_admin.current_status REL _em_admin.deposition_date 2024-01-08 _em_admin.deposition_site PDBJ _em_admin.entry_id 8XRQ _em_admin.last_update 2025-03-26 _em_admin.map_release_date 2024-12-18 _em_admin.title 'SARS-CoV-2 BA.1 spike RBD in complex bound with VacBB-639' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # loop_ _em_entity_assembly_naturalsource.cell _em_entity_assembly_naturalsource.cellular_location _em_entity_assembly_naturalsource.entity_assembly_id _em_entity_assembly_naturalsource.id _em_entity_assembly_naturalsource.ncbi_tax_id _em_entity_assembly_naturalsource.organism _em_entity_assembly_naturalsource.organelle _em_entity_assembly_naturalsource.organ _em_entity_assembly_naturalsource.strain _em_entity_assembly_naturalsource.tissue _em_entity_assembly_naturalsource.details ? ? 1 2 2697049 'Severe acute respiratory syndrome coronavirus 2' ? ? ? ? ? ? ? 2 3 9606 'Homo sapiens' ? ? ? ? ? # loop_ _em_entity_assembly_recombinant.cell _em_entity_assembly_recombinant.entity_assembly_id _em_entity_assembly_recombinant.id _em_entity_assembly_recombinant.ncbi_tax_id _em_entity_assembly_recombinant.organism _em_entity_assembly_recombinant.plasmid _em_entity_assembly_recombinant.strain HEK293 1 2 9606 'Homo sapiens' ? ? HEK293 2 3 9606 'Homo sapiens' ? ? # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time 1.82 _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 50 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K3 (6k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images 4899 # _em_imaging_optics.chr_aberration_corrector ? _em_imaging_optics.energyfilter_lower ? _em_imaging_optics.energyfilter_slit_width 20 _em_imaging_optics.energyfilter_name 'GIF Bioquantum' _em_imaging_optics.energyfilter_upper ? _em_imaging_optics.id 1 _em_imaging_optics.imaging_id 1 _em_imaging_optics.phase_plate ? _em_imaging_optics.sph_aberration_corrector ? _em_imaging_optics.details ? # _em_particle_selection.details ? _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.method ? _em_particle_selection.num_particles_selected 5391498 _em_particle_selection.reference_model ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version 'PARTICLE SELECTION' ? 1 1 ? ? Gautomatch ? 'IMAGE ACQUISITION' ? 2 ? ? 1 EPU ? MASKING ? 3 ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? CTFFIND 4 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? 'MODEL FITTING' ? 7 ? 1 ? 'UCSF Chimera' 1.16 OTHER ? 8 ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 9 1 ? ? cryoSPARC 3.2 'FINAL EULER ASSIGNMENT' ? 10 1 ? ? cryoSPARC 3.2 CLASSIFICATION ? 11 1 ? ? cryoSPARC 3.2 RECONSTRUCTION ? 12 1 ? ? cryoSPARC 3.2 'MODEL REFINEMENT' ? 13 ? 1 ? PHENIX 1.20 'VOLUME SELECTION' ? 14 1 1 1 ? ? 'SERIES ALIGNMENT' ? 15 1 1 1 ? ? 'MOLECULAR REPLACEMENT' ? 16 1 1 1 ? ? 'LATTICE DISTORTION CORRECTION' ? 17 1 1 1 ? ? 'SYMMETRY DETERMINATION' ? 18 1 1 1 ? ? 'CRYSTALLOGRAPHY MERGING' ? 19 1 1 1 ? ? # _em_specimen.concentration 1.2 _em_specimen.details 'SARS-COV-2 spike proteins were concentrated to about 2mg/mL and incubated with VacBB-639 Fab for 30min (1:2 molar ratio)' _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _pdbx_audit_support.funding_organization 'National Science Foundation (NSF, China)' _pdbx_audit_support.country China _pdbx_audit_support.grant_number 82025022 _pdbx_audit_support.ordinal 1 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'in silico model' _pdbx_initial_refinement_model.source_name AlphaFold _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.details ? # _atom_sites.entry_id 8XRQ _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_