HEADER VIRAL PROTEIN/IMMUNE SYSTEM 09-JAN-24 8XSI TITLE SARS-COV-2 RBD + IMCAS-364 (LOCAL REFINEMENT) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPIKE PROTEIN S1; COMPND 3 CHAIN: B; COMPND 4 FRAGMENT: RBD DOMAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: IMCAS-364 H CHAIN; COMPND 8 CHAIN: H; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: IMCAS-364 L CHAIN; COMPND 12 CHAIN: L; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_COMMON: 2019-NCOV, SARS-COV-2; SOURCE 5 ORGANISM_TAXID: 2697049; SOURCE 6 GENE: S, 2; SOURCE 7 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 8 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 15 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 17 MOL_ID: 3; SOURCE 18 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 19 ORGANISM_COMMON: HUMAN; SOURCE 20 ORGANISM_TAXID: 9606; SOURCE 21 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 22 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 23 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS SARS-COV-2, BROADLY NEUTRALIZING ANTIBODIES, VIRAL PROTEIN/IMMUNE KEYWDS 2 SYSTEM, VIRAL PROTEIN-IMMUNE SYSTEM COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR Z.TONG,Y.CUI,Y.XIE,J.TONG,G.F.GAO,J.QI REVDAT 1 17-JUL-24 8XSI 0 JRNL AUTH Z.TONG,J.TONG,W.LEI,Y.XIE,Y.CUI,G.JIA,S.LI,Z.ZHANG,Z.CHENG, JRNL AUTH 2 X.XING,H.MA,L.DENG,R.ZHANG,X.ZHAO,K.LIU,Q.WANG,J.QI,H.HUANG, JRNL AUTH 3 R.SONG,Z.SU,G.WU,J.LOU,G.F.GAO JRNL TITL DECIPHERING A RELIABLE SYNERGISTIC BISPECIFIC STRATEGY OF JRNL TITL 2 RESCUING ANTIBODIES FOR SARS-COV-2 ESCAPE VARIANTS, JRNL TITL 3 INCLUDING BA.2.86, EG.5.1, AND JN.1. JRNL REF CELL REP V. 43 14338 2024 JRNL REFN ESSN 2211-1247 JRNL PMID 38850530 JRNL DOI 10.1016/J.CELREP.2024.114338 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.100 REMARK 3 NUMBER OF PARTICLES : 594696 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8XSI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBC ON 12-JAN-24. REMARK 100 THE DEPOSITION ID IS D_1300044102. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : CRYO-EM STRUCTURE OF SARS-COV-2 REMARK 245 RBD + IMCAS-364 (LOCAL REMARK 245 REFINEMENT); SARS-COV-2 RBD; REMARK 245 IMCAS-364 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 4000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG B 319 REMARK 465 VAL B 320 REMARK 465 GLN B 321 REMARK 465 PRO B 322 REMARK 465 THR B 323 REMARK 465 GLU B 324 REMARK 465 SER B 325 REMARK 465 ILE B 326 REMARK 465 VAL B 327 REMARK 465 ARG B 328 REMARK 465 PHE B 329 REMARK 465 PRO B 330 REMARK 465 ASN B 331 REMARK 465 ILE B 332 REMARK 465 ALA H 127 REMARK 465 SER H 128 REMARK 465 THR H 129 REMARK 465 LYS H 130 REMARK 465 GLY H 131 REMARK 465 PRO H 132 REMARK 465 SER H 133 REMARK 465 VAL H 134 REMARK 465 PHE H 135 REMARK 465 PRO H 136 REMARK 465 LEU H 137 REMARK 465 ALA H 138 REMARK 465 PRO H 139 REMARK 465 SER H 140 REMARK 465 SER H 141 REMARK 465 LYS H 142 REMARK 465 SER H 143 REMARK 465 THR H 144 REMARK 465 SER H 145 REMARK 465 GLY H 146 REMARK 465 GLY H 147 REMARK 465 THR H 148 REMARK 465 ALA H 149 REMARK 465 ALA H 150 REMARK 465 LEU H 151 REMARK 465 GLY H 152 REMARK 465 CYS H 153 REMARK 465 LEU H 154 REMARK 465 VAL H 155 REMARK 465 LYS H 156 REMARK 465 ASP H 157 REMARK 465 TYR H 158 REMARK 465 PHE H 159 REMARK 465 PRO H 160 REMARK 465 GLU H 161 REMARK 465 PRO H 162 REMARK 465 VAL H 163 REMARK 465 THR H 164 REMARK 465 VAL H 165 REMARK 465 SER H 166 REMARK 465 TRP H 167 REMARK 465 ASN H 168 REMARK 465 SER H 169 REMARK 465 GLY H 170 REMARK 465 ALA H 171 REMARK 465 LEU H 172 REMARK 465 THR H 173 REMARK 465 SER H 174 REMARK 465 GLY H 175 REMARK 465 VAL H 176 REMARK 465 HIS H 177 REMARK 465 THR H 178 REMARK 465 PHE H 179 REMARK 465 PRO H 180 REMARK 465 ALA H 181 REMARK 465 VAL H 182 REMARK 465 LEU H 183 REMARK 465 GLN H 184 REMARK 465 SER H 185 REMARK 465 SER H 186 REMARK 465 GLY H 187 REMARK 465 LEU H 188 REMARK 465 TYR H 189 REMARK 465 SER H 190 REMARK 465 LEU H 191 REMARK 465 SER H 192 REMARK 465 SER H 193 REMARK 465 VAL H 194 REMARK 465 VAL H 195 REMARK 465 THR H 196 REMARK 465 VAL H 197 REMARK 465 PRO H 198 REMARK 465 SER H 199 REMARK 465 SER H 200 REMARK 465 SER H 201 REMARK 465 LEU H 202 REMARK 465 GLY H 203 REMARK 465 THR H 204 REMARK 465 GLN H 205 REMARK 465 THR H 206 REMARK 465 TYR H 207 REMARK 465 ILE H 208 REMARK 465 CYS H 209 REMARK 465 ASN H 210 REMARK 465 VAL H 211 REMARK 465 ASN H 212 REMARK 465 HIS H 213 REMARK 465 LYS H 214 REMARK 465 PRO H 215 REMARK 465 SER H 216 REMARK 465 ASN H 217 REMARK 465 THR H 218 REMARK 465 LYS H 219 REMARK 465 VAL H 220 REMARK 465 ASP H 221 REMARK 465 LYS H 222 REMARK 465 ARG H 223 REMARK 465 VAL H 224 REMARK 465 GLU H 225 REMARK 465 PRO H 226 REMARK 465 LYS H 227 REMARK 465 SER H 228 REMARK 465 CYS H 229 REMARK 465 ASP H 230 REMARK 465 LYS H 231 REMARK 465 THR H 232 REMARK 465 HIS H 233 REMARK 465 THR H 234 REMARK 465 CYS H 235 REMARK 465 PRO H 236 REMARK 465 PRO H 237 REMARK 465 CYS H 238 REMARK 465 PRO H 239 REMARK 465 ALA H 240 REMARK 465 PRO H 241 REMARK 465 GLU H 242 REMARK 465 LEU H 243 REMARK 465 LEU H 244 REMARK 465 GLY H 245 REMARK 465 GLY H 246 REMARK 465 PRO H 247 REMARK 465 SER H 248 REMARK 465 VAL H 249 REMARK 465 PHE H 250 REMARK 465 LEU H 251 REMARK 465 PHE H 252 REMARK 465 PRO H 253 REMARK 465 PRO H 254 REMARK 465 LYS H 255 REMARK 465 PRO H 256 REMARK 465 LYS H 257 REMARK 465 GLY H 258 REMARK 465 HIS H 259 REMARK 465 LEU H 260 REMARK 465 MET H 261 REMARK 465 ILE H 262 REMARK 465 SER H 263 REMARK 465 ARG H 264 REMARK 465 THR H 265 REMARK 465 PRO H 266 REMARK 465 GLU H 267 REMARK 465 VAL H 268 REMARK 465 THR H 269 REMARK 465 CYS H 270 REMARK 465 VAL H 271 REMARK 465 VAL H 272 REMARK 465 VAL H 273 REMARK 465 ASP H 274 REMARK 465 VAL H 275 REMARK 465 SER H 276 REMARK 465 HIS H 277 REMARK 465 GLU H 278 REMARK 465 ASP H 279 REMARK 465 PRO H 280 REMARK 465 GLU H 281 REMARK 465 VAL H 282 REMARK 465 LYS H 283 REMARK 465 PHE H 284 REMARK 465 ASN H 285 REMARK 465 TRP H 286 REMARK 465 TYR H 287 REMARK 465 VAL H 288 REMARK 465 ASP H 289 REMARK 465 GLY H 290 REMARK 465 VAL H 291 REMARK 465 GLU H 292 REMARK 465 VAL H 293 REMARK 465 HIS H 294 REMARK 465 ASN H 295 REMARK 465 ALA H 296 REMARK 465 LYS H 297 REMARK 465 THR H 298 REMARK 465 LYS H 299 REMARK 465 PRO H 300 REMARK 465 ARG H 301 REMARK 465 GLU H 302 REMARK 465 GLU H 303 REMARK 465 GLN H 304 REMARK 465 TYR H 305 REMARK 465 ASN H 306 REMARK 465 SER H 307 REMARK 465 THR H 308 REMARK 465 TYR H 309 REMARK 465 ARG H 310 REMARK 465 VAL H 311 REMARK 465 VAL H 312 REMARK 465 SER H 313 REMARK 465 VAL H 314 REMARK 465 LEU H 315 REMARK 465 THR H 316 REMARK 465 VAL H 317 REMARK 465 LEU H 318 REMARK 465 HIS H 319 REMARK 465 GLN H 320 REMARK 465 ASP H 321 REMARK 465 TRP H 322 REMARK 465 LEU H 323 REMARK 465 ASN H 324 REMARK 465 GLY H 325 REMARK 465 LYS H 326 REMARK 465 GLU H 327 REMARK 465 TYR H 328 REMARK 465 LYS H 329 REMARK 465 CYS H 330 REMARK 465 LYS H 331 REMARK 465 VAL H 332 REMARK 465 SER H 333 REMARK 465 ASN H 334 REMARK 465 LYS H 335 REMARK 465 ALA H 336 REMARK 465 LEU H 337 REMARK 465 PRO H 338 REMARK 465 ALA H 339 REMARK 465 PRO H 340 REMARK 465 ILE H 341 REMARK 465 GLU H 342 REMARK 465 LYS H 343 REMARK 465 THR H 344 REMARK 465 ILE H 345 REMARK 465 SER H 346 REMARK 465 LYS H 347 REMARK 465 ALA H 348 REMARK 465 LYS H 349 REMARK 465 GLY H 350 REMARK 465 GLN H 351 REMARK 465 PRO H 352 REMARK 465 ARG H 353 REMARK 465 GLU H 354 REMARK 465 PRO H 355 REMARK 465 GLN H 356 REMARK 465 VAL H 357 REMARK 465 TYR H 358 REMARK 465 THR H 359 REMARK 465 LEU H 360 REMARK 465 PRO H 361 REMARK 465 PRO H 362 REMARK 465 SER H 363 REMARK 465 ARG H 364 REMARK 465 ASP H 365 REMARK 465 GLU H 366 REMARK 465 LEU H 367 REMARK 465 THR H 368 REMARK 465 LYS H 369 REMARK 465 ASN H 370 REMARK 465 GLN H 371 REMARK 465 VAL H 372 REMARK 465 SER H 373 REMARK 465 LEU H 374 REMARK 465 THR H 375 REMARK 465 CYS H 376 REMARK 465 LEU H 377 REMARK 465 VAL H 378 REMARK 465 LYS H 379 REMARK 465 GLY H 380 REMARK 465 PHE H 381 REMARK 465 TYR H 382 REMARK 465 PRO H 383 REMARK 465 SER H 384 REMARK 465 ASP H 385 REMARK 465 ILE H 386 REMARK 465 ALA H 387 REMARK 465 VAL H 388 REMARK 465 GLU H 389 REMARK 465 TRP H 390 REMARK 465 GLU H 391 REMARK 465 SER H 392 REMARK 465 ASN H 393 REMARK 465 GLY H 394 REMARK 465 GLN H 395 REMARK 465 PRO H 396 REMARK 465 GLU H 397 REMARK 465 ASN H 398 REMARK 465 ASN H 399 REMARK 465 TYR H 400 REMARK 465 LYS H 401 REMARK 465 THR H 402 REMARK 465 THR H 403 REMARK 465 PRO H 404 REMARK 465 PRO H 405 REMARK 465 VAL H 406 REMARK 465 LEU H 407 REMARK 465 ASP H 408 REMARK 465 SER H 409 REMARK 465 ASP H 410 REMARK 465 GLY H 411 REMARK 465 SER H 412 REMARK 465 PHE H 413 REMARK 465 PHE H 414 REMARK 465 LEU H 415 REMARK 465 TYR H 416 REMARK 465 SER H 417 REMARK 465 LYS H 418 REMARK 465 LEU H 419 REMARK 465 THR H 420 REMARK 465 VAL H 421 REMARK 465 ASP H 422 REMARK 465 LYS H 423 REMARK 465 SER H 424 REMARK 465 ARG H 425 REMARK 465 TRP H 426 REMARK 465 GLN H 427 REMARK 465 GLN H 428 REMARK 465 GLY H 429 REMARK 465 ASN H 430 REMARK 465 VAL H 431 REMARK 465 PHE H 432 REMARK 465 SER H 433 REMARK 465 CYS H 434 REMARK 465 SER H 435 REMARK 465 VAL H 436 REMARK 465 MET H 437 REMARK 465 HIS H 438 REMARK 465 GLU H 439 REMARK 465 ALA H 440 REMARK 465 LEU H 441 REMARK 465 HIS H 442 REMARK 465 ASN H 443 REMARK 465 HIS H 444 REMARK 465 TYR H 445 REMARK 465 THR H 446 REMARK 465 GLN H 447 REMARK 465 LYS H 448 REMARK 465 SER H 449 REMARK 465 LEU H 450 REMARK 465 SER H 451 REMARK 465 LEU H 452 REMARK 465 SER H 453 REMARK 465 PRO H 454 REMARK 465 GLY H 455 REMARK 465 LYS H 456 REMARK 465 THR L 109 REMARK 465 VAL L 110 REMARK 465 ALA L 111 REMARK 465 ALA L 112 REMARK 465 PRO L 113 REMARK 465 SER L 114 REMARK 465 VAL L 115 REMARK 465 PHE L 116 REMARK 465 ILE L 117 REMARK 465 PHE L 118 REMARK 465 PRO L 119 REMARK 465 PRO L 120 REMARK 465 SER L 121 REMARK 465 ASP L 122 REMARK 465 GLU L 123 REMARK 465 GLN L 124 REMARK 465 LEU L 125 REMARK 465 LYS L 126 REMARK 465 SER L 127 REMARK 465 GLY L 128 REMARK 465 THR L 129 REMARK 465 ALA L 130 REMARK 465 SER L 131 REMARK 465 VAL L 132 REMARK 465 VAL L 133 REMARK 465 CYS L 134 REMARK 465 LEU L 135 REMARK 465 LEU L 136 REMARK 465 ASN L 137 REMARK 465 ASN L 138 REMARK 465 PHE L 139 REMARK 465 TYR L 140 REMARK 465 PRO L 141 REMARK 465 ARG L 142 REMARK 465 GLU L 143 REMARK 465 ALA L 144 REMARK 465 LYS L 145 REMARK 465 VAL L 146 REMARK 465 GLN L 147 REMARK 465 TRP L 148 REMARK 465 LYS L 149 REMARK 465 VAL L 150 REMARK 465 ASP L 151 REMARK 465 ASN L 152 REMARK 465 ALA L 153 REMARK 465 LEU L 154 REMARK 465 GLN L 155 REMARK 465 SER L 156 REMARK 465 GLY L 157 REMARK 465 ASN L 158 REMARK 465 SER L 159 REMARK 465 GLN L 160 REMARK 465 GLU L 161 REMARK 465 SER L 162 REMARK 465 VAL L 163 REMARK 465 THR L 164 REMARK 465 GLU L 165 REMARK 465 GLN L 166 REMARK 465 ASP L 167 REMARK 465 SER L 168 REMARK 465 LYS L 169 REMARK 465 ASP L 170 REMARK 465 SER L 171 REMARK 465 THR L 172 REMARK 465 TYR L 173 REMARK 465 SER L 174 REMARK 465 LEU L 175 REMARK 465 SER L 176 REMARK 465 SER L 177 REMARK 465 THR L 178 REMARK 465 LEU L 179 REMARK 465 THR L 180 REMARK 465 LEU L 181 REMARK 465 SER L 182 REMARK 465 LYS L 183 REMARK 465 ALA L 184 REMARK 465 ASP L 185 REMARK 465 TYR L 186 REMARK 465 GLU L 187 REMARK 465 LYS L 188 REMARK 465 HIS L 189 REMARK 465 LYS L 190 REMARK 465 VAL L 191 REMARK 465 TYR L 192 REMARK 465 ALA L 193 REMARK 465 CYS L 194 REMARK 465 GLU L 195 REMARK 465 VAL L 196 REMARK 465 THR L 197 REMARK 465 HIS L 198 REMARK 465 GLN L 199 REMARK 465 GLY L 200 REMARK 465 LEU L 201 REMARK 465 SER L 202 REMARK 465 SER L 203 REMARK 465 PRO L 204 REMARK 465 VAL L 205 REMARK 465 THR L 206 REMARK 465 LYS L 207 REMARK 465 SER L 208 REMARK 465 PHE L 209 REMARK 465 ASN L 210 REMARK 465 ARG L 211 REMARK 465 GLY L 212 REMARK 465 GLU L 213 REMARK 465 CYS L 214 REMARK 465 SER L 215 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN B 354 OG SER B 399 2.14 REMARK 500 OD2 ASP H 54 OG SER H 56 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA B 363 129.64 -37.88 REMARK 500 ASP B 428 35.66 -97.94 REMARK 500 HIS B 519 56.56 -96.54 REMARK 500 ALA B 520 -79.38 -158.94 REMARK 500 ASN H 77 60.78 60.92 REMARK 500 TYR H 103 -127.36 60.84 REMARK 500 SER L 30 -120.15 60.24 REMARK 500 LYS L 45 143.28 71.72 REMARK 500 ALA L 50 18.61 58.37 REMARK 500 ALA L 51 -8.70 72.17 REMARK 500 SER L 76 -7.24 72.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-38619 RELATED DB: EMDB REMARK 900 SARS-COV-2 RBD + IMCAS-364 (LOCAL REFINEMENT) DBREF 8XSI B 319 527 UNP P0DTC2 SPIKE_SARS2 319 527 DBREF 8XSI H 1 456 PDB 8XSI 8XSI 1 456 DBREF 8XSI L 1 215 PDB 8XSI 8XSI 1 215 SEQRES 1 B 209 ARG VAL GLN PRO THR GLU SER ILE VAL ARG PHE PRO ASN SEQRES 2 B 209 ILE THR ASN LEU CYS PRO PHE GLY GLU VAL PHE ASN ALA SEQRES 3 B 209 THR ARG PHE ALA SER VAL TYR ALA TRP ASN ARG LYS ARG SEQRES 4 B 209 ILE SER ASN CYS VAL ALA ASP TYR SER VAL LEU TYR ASN SEQRES 5 B 209 SER ALA SER PHE SER THR PHE LYS CYS TYR GLY VAL SER SEQRES 6 B 209 PRO THR LYS LEU ASN ASP LEU CYS PHE THR ASN VAL TYR SEQRES 7 B 209 ALA ASP SER PHE VAL ILE ARG GLY ASP GLU VAL ARG GLN SEQRES 8 B 209 ILE ALA PRO GLY GLN THR GLY LYS ILE ALA ASP TYR ASN SEQRES 9 B 209 TYR LYS LEU PRO ASP ASP PHE THR GLY CYS VAL ILE ALA SEQRES 10 B 209 TRP ASN SER ASN ASN LEU ASP SER LYS VAL GLY GLY ASN SEQRES 11 B 209 TYR ASN TYR LEU TYR ARG LEU PHE ARG LYS SER ASN LEU SEQRES 12 B 209 LYS PRO PHE GLU ARG ASP ILE SER THR GLU ILE TYR GLN SEQRES 13 B 209 ALA GLY SER THR PRO CYS ASN GLY VAL GLU GLY PHE ASN SEQRES 14 B 209 CYS TYR PHE PRO LEU GLN SER TYR GLY PHE GLN PRO THR SEQRES 15 B 209 ASN GLY VAL GLY TYR GLN PRO TYR ARG VAL VAL VAL LEU SEQRES 16 B 209 SER PHE GLU LEU LEU HIS ALA PRO ALA THR VAL CYS GLY SEQRES 17 B 209 PRO SEQRES 1 H 456 GLN VAL GLN LEU GLN GLU SER GLY GLY GLY VAL VAL GLN SEQRES 2 H 456 PRO GLY ARG SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 H 456 PHE THR PHE SER ARG TYR GLY MET HIS TRP VAL ARG GLN SEQRES 4 H 456 ALA PRO GLY LYS GLY LEU GLU TRP VAL ALA VAL ILE TRP SEQRES 5 H 456 TYR ASP GLY SER ASN LYS TYR TYR ALA ASP SER VAL LYS SEQRES 6 H 456 GLY ARG PHE THR ILE SER ARG ASP ASN SER LYS ASN THR SEQRES 7 H 456 LEU TYR LEU GLN MET ASN SER LEU ARG ALA ASP ASP THR SEQRES 8 H 456 ALA VAL TYR TYR CYS ALA LYS GLN GLU GLY THR TYR CYS SEQRES 9 H 456 SER GLY GLY SER CYS TYR SER GLY LEU ASP TYR TRP GLY SEQRES 10 H 456 GLN GLY THR LEU VAL THR VAL SER SER ALA SER THR LYS SEQRES 11 H 456 GLY PRO SER VAL PHE PRO LEU ALA PRO SER SER LYS SER SEQRES 12 H 456 THR SER GLY GLY THR ALA ALA LEU GLY CYS LEU VAL LYS SEQRES 13 H 456 ASP TYR PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER SEQRES 14 H 456 GLY ALA LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL SEQRES 15 H 456 LEU GLN SER SER GLY LEU TYR SER LEU SER SER VAL VAL SEQRES 16 H 456 THR VAL PRO SER SER SER LEU GLY THR GLN THR TYR ILE SEQRES 17 H 456 CYS ASN VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP SEQRES 18 H 456 LYS ARG VAL GLU PRO LYS SER CYS ASP LYS THR HIS THR SEQRES 19 H 456 CYS PRO PRO CYS PRO ALA PRO GLU LEU LEU GLY GLY PRO SEQRES 20 H 456 SER VAL PHE LEU PHE PRO PRO LYS PRO LYS GLY HIS LEU SEQRES 21 H 456 MET ILE SER ARG THR PRO GLU VAL THR CYS VAL VAL VAL SEQRES 22 H 456 ASP VAL SER HIS GLU ASP PRO GLU VAL LYS PHE ASN TRP SEQRES 23 H 456 TYR VAL ASP GLY VAL GLU VAL HIS ASN ALA LYS THR LYS SEQRES 24 H 456 PRO ARG GLU GLU GLN TYR ASN SER THR TYR ARG VAL VAL SEQRES 25 H 456 SER VAL LEU THR VAL LEU HIS GLN ASP TRP LEU ASN GLY SEQRES 26 H 456 LYS GLU TYR LYS CYS LYS VAL SER ASN LYS ALA LEU PRO SEQRES 27 H 456 ALA PRO ILE GLU LYS THR ILE SER LYS ALA LYS GLY GLN SEQRES 28 H 456 PRO ARG GLU PRO GLN VAL TYR THR LEU PRO PRO SER ARG SEQRES 29 H 456 ASP GLU LEU THR LYS ASN GLN VAL SER LEU THR CYS LEU SEQRES 30 H 456 VAL LYS GLY PHE TYR PRO SER ASP ILE ALA VAL GLU TRP SEQRES 31 H 456 GLU SER ASN GLY GLN PRO GLU ASN ASN TYR LYS THR THR SEQRES 32 H 456 PRO PRO VAL LEU ASP SER ASP GLY SER PHE PHE LEU TYR SEQRES 33 H 456 SER LYS LEU THR VAL ASP LYS SER ARG TRP GLN GLN GLY SEQRES 34 H 456 ASN VAL PHE SER CYS SER VAL MET HIS GLU ALA LEU HIS SEQRES 35 H 456 ASN HIS TYR THR GLN LYS SER LEU SER LEU SER PRO GLY SEQRES 36 H 456 LYS SEQRES 1 L 215 ASP ILE GLN MET THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 L 215 SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SER SEQRES 3 L 215 GLN SER ILE SER SER TYR LEU ASN TRP TYR GLN GLN LYS SEQRES 4 L 215 PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR ALA ALA SER SEQRES 5 L 215 SER LEU GLN SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 L 215 GLY SER GLY THR ASP PHE THR LEU THR ILE SER SER LEU SEQRES 7 L 215 GLN PRO GLU ASP PHE ALA THR TYR TYR CYS GLN GLN SER SEQRES 8 L 215 TYR SER THR PRO LEU THR PHE GLY GLY GLY ILE LYS VAL SEQRES 9 L 215 ASP ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 L 215 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 L 215 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 L 215 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 L 215 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 L 215 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 L 215 LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU SEQRES 16 L 215 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 L 215 PHE ASN ARG GLY GLU CYS SER HET NAG B 601 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 4 NAG C8 H15 N O6 HELIX 1 AA1 TYR B 365 ASN B 370 1 6 HELIX 2 AA2 ASP B 405 ILE B 410 5 6 HELIX 3 AA3 GLY B 416 ASN B 422 1 7 HELIX 4 AA4 SER B 438 SER B 443 1 6 HELIX 5 AA5 GLY B 502 TYR B 505 5 4 HELIX 6 AA6 THR H 28 TYR H 32 5 5 HELIX 7 AA7 ASP H 62 LYS H 65 5 4 HELIX 8 AA8 ARG H 87 THR H 91 5 5 SHEET 1 AA1 5 ASN B 354 ILE B 358 0 SHEET 2 AA1 5 ASN B 394 ARG B 403 -1 O ALA B 397 N LYS B 356 SHEET 3 AA1 5 PRO B 507 GLU B 516 -1 O VAL B 510 N PHE B 400 SHEET 4 AA1 5 GLY B 431 ASN B 437 -1 N ILE B 434 O VAL B 511 SHEET 5 AA1 5 THR B 376 TYR B 380 -1 N TYR B 380 O GLY B 431 SHEET 1 AA2 2 LEU B 452 ARG B 454 0 SHEET 2 AA2 2 LEU B 492 SER B 494 -1 O GLN B 493 N TYR B 453 SHEET 1 AA3 2 TYR B 473 GLN B 474 0 SHEET 2 AA3 2 CYS B 488 TYR B 489 -1 O TYR B 489 N TYR B 473 SHEET 1 AA4 4 GLN H 3 SER H 7 0 SHEET 2 AA4 4 LEU H 18 SER H 25 -1 O SER H 25 N GLN H 3 SHEET 3 AA4 4 THR H 78 MET H 83 -1 O MET H 83 N LEU H 18 SHEET 4 AA4 4 PHE H 68 ASP H 73 -1 N SER H 71 O TYR H 80 SHEET 1 AA5 6 VAL H 11 VAL H 12 0 SHEET 2 AA5 6 THR H 120 VAL H 124 1 O THR H 123 N VAL H 12 SHEET 3 AA5 6 ALA H 92 GLN H 99 -1 N ALA H 92 O VAL H 122 SHEET 4 AA5 6 MET H 34 GLN H 39 -1 N VAL H 37 O TYR H 95 SHEET 5 AA5 6 LEU H 45 ILE H 51 -1 O VAL H 48 N TRP H 36 SHEET 6 AA5 6 LYS H 58 TYR H 60 -1 O TYR H 59 N VAL H 50 SHEET 1 AA6 4 VAL H 11 VAL H 12 0 SHEET 2 AA6 4 THR H 120 VAL H 124 1 O THR H 123 N VAL H 12 SHEET 3 AA6 4 ALA H 92 GLN H 99 -1 N ALA H 92 O VAL H 122 SHEET 4 AA6 4 LEU H 113 TRP H 116 -1 O TYR H 115 N LYS H 98 SHEET 1 AA7 4 THR L 5 GLN L 6 0 SHEET 2 AA7 4 THR L 20 ARG L 24 -1 O ARG L 24 N THR L 5 SHEET 3 AA7 4 ASP L 70 THR L 74 -1 O LEU L 73 N ILE L 21 SHEET 4 AA7 4 SER L 63 SER L 65 -1 N SER L 63 O THR L 74 SHEET 1 AA8 6 SER L 10 ALA L 13 0 SHEET 2 AA8 6 ILE L 102 ILE L 106 1 O LYS L 103 N LEU L 11 SHEET 3 AA8 6 THR L 85 GLN L 90 -1 N TYR L 86 O ILE L 102 SHEET 4 AA8 6 LEU L 33 TYR L 36 -1 N TYR L 36 O TYR L 87 SHEET 5 AA8 6 LEU L 46 TYR L 49 -1 O ILE L 48 N TRP L 35 SHEET 6 AA8 6 SER L 53 LEU L 54 -1 O SER L 53 N TYR L 49 SSBOND 1 CYS B 379 CYS B 432 1555 1555 2.03 SSBOND 2 CYS B 391 CYS B 525 1555 1555 2.03 SSBOND 3 CYS B 480 CYS B 488 1555 1555 2.03 SSBOND 4 CYS H 22 CYS H 96 1555 1555 2.04 SSBOND 5 CYS H 104 CYS H 109 1555 1555 2.04 SSBOND 6 CYS L 23 CYS L 88 1555 1555 2.04 LINK ND2 ASN B 343 C1 NAG B 601 1555 1555 1.44 CISPEP 1 SER L 7 PRO L 8 0 1.97 CISPEP 2 THR L 94 PRO L 95 0 -2.16 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000