HEADER TRANSCRIPTION 10-JAN-24 8XT8 TITLE CLOSTRIDIOIDES DIFFICILE MARR (WP_003434724) WITH HG-BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: MARR FAMILY TRANSCRIPTIONAL REGULATOR; COMPND 3 CHAIN: A, C, D; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: WP_003434724; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: MARR FAMILY TRANSCRIPTIONAL REGULATOR; COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 OTHER_DETAILS: WP_003434724 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIOIDES DIFFICILE; SOURCE 3 ORGANISM_TAXID: 1496; SOURCE 4 GENE: MEXR_2, SAMEA897059_03225; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: CLOSTRIDIOIDES DIFFICILE; SOURCE 9 ORGANISM_TAXID: 1496; SOURCE 10 GENE: MEXR_2, SAMEA897059_03225; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MARR, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR S.PARK,N.KWON REVDAT 1 20-NOV-24 8XT8 0 JRNL AUTH N.KWON,S.RHO,S.C.HA,S.PARK JRNL TITL CRYSTAL STRUCTURE OF A CLOSTRIDIOIDES DIFFICILE MULTIPLE JRNL TITL 2 ANTIBIOTIC RESISTANCE REGULATOR (MARR) CD0473 SUGGESTS A JRNL TITL 3 POTENTIAL REDOX-REGULATED FUNCTION. JRNL REF INT.J.BIOL.MACROMOL. V. 280 36036 2024 JRNL REFN ISSN 0141-8130 JRNL PMID 39332572 JRNL DOI 10.1016/J.IJBIOMAC.2024.136036 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 87.41 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 37635 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1992 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2692 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.23 REMARK 3 BIN R VALUE (WORKING SET) : 0.3180 REMARK 3 BIN FREE R VALUE SET COUNT : 147 REMARK 3 BIN FREE R VALUE : 0.3760 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4593 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 101 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.33000 REMARK 3 B22 (A**2) : -2.61000 REMARK 3 B33 (A**2) : -0.47000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.99000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.252 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.215 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.159 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.291 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4655 ; 0.018 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 4607 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6244 ; 2.010 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10666 ; 0.897 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 557 ; 7.339 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 218 ;39.842 ;24.908 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 964 ;19.848 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;20.785 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 720 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5054 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 977 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2240 ; 5.297 ; 5.777 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2239 ; 5.286 ; 5.775 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2793 ; 7.788 ; 8.645 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2794 ; 7.788 ; 8.645 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2415 ; 6.904 ; 6.434 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2416 ; 6.903 ; 6.434 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3452 ;10.438 ; 9.316 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5546 ;13.557 ;45.501 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5534 ;13.566 ;45.479 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8XT8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-JAN-24. REMARK 100 THE DEPOSITION ID IS D_1300044140. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-NOV-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 7A (6B, 6C1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00765 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37635 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 87.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.0 M NACL, 0.1 M SODIUM ACETATE PH REMARK 280 4.5, AND 10 MM DTT, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.90350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -138.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -141.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 LYS A 141 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 LYS B 141 REMARK 465 GLY C -2 REMARK 465 SER C -1 REMARK 465 HIS C 0 REMARK 465 MET C 1 REMARK 465 LYS C 141 REMARK 465 GLY D -2 REMARK 465 SER D -1 REMARK 465 HIS D 0 REMARK 465 MET D 1 REMARK 465 LYS D 2 REMARK 465 LYS D 141 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C GLY C 140 O HOH C 606 1.77 REMARK 500 OD1 ASP D 90 N ARG D 92 1.88 REMARK 500 OG SER C 62 CG LYS C 64 1.89 REMARK 500 CE LYS C 64 OG1 THR C 69 1.91 REMARK 500 NZ LYS A 2 O ILE B 124 2.03 REMARK 500 O GLY A 140 O HOH A 601 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 59 CA - CB - SG ANGL. DEV. = 9.0 DEGREES REMARK 500 LYS C 64 CD - CE - NZ ANGL. DEV. = -15.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 63 -131.63 113.67 REMARK 500 LYS A 64 -165.87 63.84 REMARK 500 ASP A 90 123.75 147.99 REMARK 500 CYS B 63 -141.28 71.89 REMARK 500 LYS B 66 -75.22 -131.15 REMARK 500 ASP B 90 108.70 82.96 REMARK 500 ARG B 92 -7.63 84.72 REMARK 500 SER B 123 15.87 -64.45 REMARK 500 LYS C 64 29.80 -152.90 REMARK 500 LYS C 66 -157.26 165.35 REMARK 500 CYS D 63 34.46 -84.77 REMARK 500 ASP D 65 -169.92 -71.22 REMARK 500 ASP D 90 136.30 91.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER B 62 CYS B 63 -148.90 REMARK 500 LYS B 64 ASP B 65 -136.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG B 500 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 59 SG REMARK 620 2 THR B 70 OG1 167.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG C 500 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 59 SG REMARK 620 2 GLU C 60 OE1 129.3 REMARK 620 N 1 DBREF1 8XT8 A 1 141 UNP A0A9X9QLH1_CLODI DBREF2 8XT8 A A0A9X9QLH1 13 153 DBREF1 8XT8 B 1 141 UNP A0A9X9QLH1_CLODI DBREF2 8XT8 B A0A9X9QLH1 13 153 DBREF1 8XT8 C 1 141 UNP A0A9X9QLH1_CLODI DBREF2 8XT8 C A0A9X9QLH1 13 153 DBREF1 8XT8 D 1 141 UNP A0A9X9QLH1_CLODI DBREF2 8XT8 D A0A9X9QLH1 13 153 SEQADV 8XT8 GLY A -2 UNP A0A9X9QLH EXPRESSION TAG SEQADV 8XT8 SER A -1 UNP A0A9X9QLH EXPRESSION TAG SEQADV 8XT8 HIS A 0 UNP A0A9X9QLH EXPRESSION TAG SEQADV 8XT8 MET B -19 UNP A0A9X9QLH INITIATING METHIONINE SEQADV 8XT8 GLY B -18 UNP A0A9X9QLH EXPRESSION TAG SEQADV 8XT8 SER B -17 UNP A0A9X9QLH EXPRESSION TAG SEQADV 8XT8 SER B -16 UNP A0A9X9QLH EXPRESSION TAG SEQADV 8XT8 HIS B -15 UNP A0A9X9QLH EXPRESSION TAG SEQADV 8XT8 HIS B -14 UNP A0A9X9QLH EXPRESSION TAG SEQADV 8XT8 HIS B -13 UNP A0A9X9QLH EXPRESSION TAG SEQADV 8XT8 HIS B -12 UNP A0A9X9QLH EXPRESSION TAG SEQADV 8XT8 HIS B -11 UNP A0A9X9QLH EXPRESSION TAG SEQADV 8XT8 HIS B -10 UNP A0A9X9QLH EXPRESSION TAG SEQADV 8XT8 SER B -9 UNP A0A9X9QLH EXPRESSION TAG SEQADV 8XT8 SER B -8 UNP A0A9X9QLH EXPRESSION TAG SEQADV 8XT8 GLY B -7 UNP A0A9X9QLH EXPRESSION TAG SEQADV 8XT8 LEU B -6 UNP A0A9X9QLH EXPRESSION TAG SEQADV 8XT8 VAL B -5 UNP A0A9X9QLH EXPRESSION TAG SEQADV 8XT8 PRO B -4 UNP A0A9X9QLH EXPRESSION TAG SEQADV 8XT8 ARG B -3 UNP A0A9X9QLH EXPRESSION TAG SEQADV 8XT8 GLY B -2 UNP A0A9X9QLH EXPRESSION TAG SEQADV 8XT8 SER B -1 UNP A0A9X9QLH EXPRESSION TAG SEQADV 8XT8 HIS B 0 UNP A0A9X9QLH EXPRESSION TAG SEQADV 8XT8 GLY C -2 UNP A0A9X9QLH EXPRESSION TAG SEQADV 8XT8 SER C -1 UNP A0A9X9QLH EXPRESSION TAG SEQADV 8XT8 HIS C 0 UNP A0A9X9QLH EXPRESSION TAG SEQADV 8XT8 GLY D -2 UNP A0A9X9QLH EXPRESSION TAG SEQADV 8XT8 SER D -1 UNP A0A9X9QLH EXPRESSION TAG SEQADV 8XT8 HIS D 0 UNP A0A9X9QLH EXPRESSION TAG SEQRES 1 A 144 GLY SER HIS MET LYS ASP PHE GLU LYS LEU TYR GLU ALA SEQRES 2 A 144 THR THR LYS LEU VAL SER THR SER LEU LYS VAL LYS ASP SEQRES 3 A 144 ASP LEU LYS LYS MET PHE LYS GLN ASN GLY TYR ASP ILE SEQRES 4 A 144 THR THR ASP HIS TYR ALA LEU LEU ARG PHE LEU TRP GLU SEQRES 5 A 144 GLN ASP GLY ILE SER GLN ILE ASP LEU CYS GLU LYS SER SEQRES 6 A 144 CYS LYS ASP LYS SER ASN THR THR ARG ILE LEU ASP VAL SEQRES 7 A 144 MET LYS ASN LYS GLY LEU ILE VAL ARG LYS VAL ASP VAL SEQRES 8 A 144 LYS ASP ARG ARG LYS PHE GLN ILE PHE LEU THR ASP LEU SEQRES 9 A 144 GLY ARG GLU LEU GLU GLU PRO LEU ASN GLU ILE ALA SER SEQRES 10 A 144 ILE TYR ALA THR GLU THR PHE LYS SER ILE SER ASP GLU SEQRES 11 A 144 GLU LEU PRO LEU PHE THR ASP ILE LEU ASP ARG ILE GLY SEQRES 12 A 144 LYS SEQRES 1 B 161 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 161 LEU VAL PRO ARG GLY SER HIS MET LYS ASP PHE GLU LYS SEQRES 3 B 161 LEU TYR GLU ALA THR THR LYS LEU VAL SER THR SER LEU SEQRES 4 B 161 LYS VAL LYS ASP ASP LEU LYS LYS MET PHE LYS GLN ASN SEQRES 5 B 161 GLY TYR ASP ILE THR THR ASP HIS TYR ALA LEU LEU ARG SEQRES 6 B 161 PHE LEU TRP GLU GLN ASP GLY ILE SER GLN ILE ASP LEU SEQRES 7 B 161 CYS GLU LYS SER CYS LYS ASP LYS SER ASN THR THR ARG SEQRES 8 B 161 ILE LEU ASP VAL MET LYS ASN LYS GLY LEU ILE VAL ARG SEQRES 9 B 161 LYS VAL ASP VAL LYS ASP ARG ARG LYS PHE GLN ILE PHE SEQRES 10 B 161 LEU THR ASP LEU GLY ARG GLU LEU GLU GLU PRO LEU ASN SEQRES 11 B 161 GLU ILE ALA SER ILE TYR ALA THR GLU THR PHE LYS SER SEQRES 12 B 161 ILE SER ASP GLU GLU LEU PRO LEU PHE THR ASP ILE LEU SEQRES 13 B 161 ASP ARG ILE GLY LYS SEQRES 1 C 144 GLY SER HIS MET LYS ASP PHE GLU LYS LEU TYR GLU ALA SEQRES 2 C 144 THR THR LYS LEU VAL SER THR SER LEU LYS VAL LYS ASP SEQRES 3 C 144 ASP LEU LYS LYS MET PHE LYS GLN ASN GLY TYR ASP ILE SEQRES 4 C 144 THR THR ASP HIS TYR ALA LEU LEU ARG PHE LEU TRP GLU SEQRES 5 C 144 GLN ASP GLY ILE SER GLN ILE ASP LEU CYS GLU LYS SER SEQRES 6 C 144 CYS LYS ASP LYS SER ASN THR THR ARG ILE LEU ASP VAL SEQRES 7 C 144 MET LYS ASN LYS GLY LEU ILE VAL ARG LYS VAL ASP VAL SEQRES 8 C 144 LYS ASP ARG ARG LYS PHE GLN ILE PHE LEU THR ASP LEU SEQRES 9 C 144 GLY ARG GLU LEU GLU GLU PRO LEU ASN GLU ILE ALA SER SEQRES 10 C 144 ILE TYR ALA THR GLU THR PHE LYS SER ILE SER ASP GLU SEQRES 11 C 144 GLU LEU PRO LEU PHE THR ASP ILE LEU ASP ARG ILE GLY SEQRES 12 C 144 LYS SEQRES 1 D 144 GLY SER HIS MET LYS ASP PHE GLU LYS LEU TYR GLU ALA SEQRES 2 D 144 THR THR LYS LEU VAL SER THR SER LEU LYS VAL LYS ASP SEQRES 3 D 144 ASP LEU LYS LYS MET PHE LYS GLN ASN GLY TYR ASP ILE SEQRES 4 D 144 THR THR ASP HIS TYR ALA LEU LEU ARG PHE LEU TRP GLU SEQRES 5 D 144 GLN ASP GLY ILE SER GLN ILE ASP LEU CYS GLU LYS SER SEQRES 6 D 144 CYS LYS ASP LYS SER ASN THR THR ARG ILE LEU ASP VAL SEQRES 7 D 144 MET LYS ASN LYS GLY LEU ILE VAL ARG LYS VAL ASP VAL SEQRES 8 D 144 LYS ASP ARG ARG LYS PHE GLN ILE PHE LEU THR ASP LEU SEQRES 9 D 144 GLY ARG GLU LEU GLU GLU PRO LEU ASN GLU ILE ALA SER SEQRES 10 D 144 ILE TYR ALA THR GLU THR PHE LYS SER ILE SER ASP GLU SEQRES 11 D 144 GLU LEU PRO LEU PHE THR ASP ILE LEU ASP ARG ILE GLY SEQRES 12 D 144 LYS HET HG A 500 1 HET HG A 501 1 HET HG B 500 1 HET HG B 501 1 HET HG C 500 1 HET HG C 501 1 HET HG D 500 1 HET HG D 501 1 HETNAM HG MERCURY (II) ION FORMUL 5 HG 8(HG 2+) FORMUL 13 HOH *101(H2 O) HELIX 1 AA1 ASP A 3 ASN A 32 1 30 HELIX 2 AA2 THR A 37 GLN A 50 1 14 HELIX 3 AA3 GLN A 55 CYS A 63 1 9 HELIX 4 AA4 ASP A 65 LYS A 79 1 15 HELIX 5 AA5 THR A 99 LEU A 105 1 7 HELIX 6 AA6 LEU A 105 PHE A 121 1 17 HELIX 7 AA7 GLU A 128 ILE A 139 1 12 HELIX 8 AA8 ASP B 3 ASN B 32 1 30 HELIX 9 AA9 THR B 37 GLN B 50 1 14 HELIX 10 AB1 SER B 54 CYS B 63 1 10 HELIX 11 AB2 LYS B 66 ASN B 78 1 13 HELIX 12 AB3 THR B 99 LEU B 105 1 7 HELIX 13 AB4 LEU B 105 LYS B 122 1 18 HELIX 14 AB5 GLU B 127 ILE B 139 1 13 HELIX 15 AB6 ASP C 3 ASN C 32 1 30 HELIX 16 AB7 THR C 37 GLN C 50 1 14 HELIX 17 AB8 GLN C 55 SER C 62 1 8 HELIX 18 AB9 SER C 67 LYS C 79 1 13 HELIX 19 AC1 THR C 99 LEU C 105 1 7 HELIX 20 AC2 LEU C 105 PHE C 121 1 17 HELIX 21 AC3 GLU C 128 ILE C 139 1 12 HELIX 22 AC4 PHE D 4 ASN D 32 1 29 HELIX 23 AC5 THR D 37 GLN D 50 1 14 HELIX 24 AC6 GLN D 55 SER D 62 1 8 HELIX 25 AC7 ASP D 65 GLY D 80 1 16 HELIX 26 AC8 THR D 99 LEU D 105 1 7 HELIX 27 AC9 LEU D 105 PHE D 121 1 17 HELIX 28 AD1 GLU D 127 ILE D 139 1 13 SHEET 1 AA1 3 ILE A 53 SER A 54 0 SHEET 2 AA1 3 ASP A 90 LEU A 98 -1 O ILE A 96 N ILE A 53 SHEET 3 AA1 3 ILE A 82 ASP A 87 -1 N VAL A 83 O PHE A 97 SHEET 1 AA2 2 ILE B 82 VAL B 86 0 SHEET 2 AA2 2 PHE B 94 LEU B 98 -1 O PHE B 97 N VAL B 83 SHEET 1 AA3 3 ILE C 53 SER C 54 0 SHEET 2 AA3 3 PHE C 94 LEU C 98 -1 O ILE C 96 N ILE C 53 SHEET 3 AA3 3 ILE C 82 VAL C 86 -1 N LYS C 85 O GLN C 95 SHEET 1 AA4 3 ILE D 53 SER D 54 0 SHEET 2 AA4 3 PHE D 94 LEU D 98 -1 O ILE D 96 N ILE D 53 SHEET 3 AA4 3 ILE D 82 VAL D 86 -1 N VAL D 83 O PHE D 97 LINK SG CYS A 59 HG HG A 500 1555 1555 2.40 LINK SG CYS B 59 HG HG B 500 1555 1555 2.42 LINK OG1 THR B 70 HG HG B 500 1555 1555 3.09 LINK SG CYS C 59 HG HG C 500 1555 1555 2.79 LINK OE1 GLU C 60 HG HG C 500 1555 1555 2.48 LINK SG CYS D 63 HG HG D 500 1555 1555 2.95 CISPEP 1 LYS A 2 ASP A 3 0 10.94 CRYST1 97.602 69.807 94.659 90.00 116.41 90.00 P 1 21 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010246 0.000000 0.005088 0.00000 SCALE2 0.000000 0.014325 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011795 0.00000