HEADER GENE REGULATION/INHIBITOR 14-JAN-24 8XV4 TITLE CRYSTAL STRUCTURE OF TTD-PHD DOMAIN OF UHRF1 IN COMPLEX WITH MSTELLA TITLE 2 PEPTIDE (RESIDUES 85-119) COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE UHRF1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: TTD-PHD DOMAIN; COMPND 5 SYNONYM: INVERTED CCAAT BOX-BINDING PROTEIN OF 90 KDA,NUCLEAR PROTEIN COMPND 6 95,NUCLEAR ZINC FINGER PROTEIN NP95,HUNP95,HNP95,RING FINGER PROTEIN COMPND 7 106,RING-TYPE E3 UBIQUITIN TRANSFERASE UHRF1,TRANSCRIPTION FACTOR COMPND 8 ICBP90,UBIQUITIN-LIKE PHD AND RING FINGER DOMAIN-CONTAINING PROTEIN COMPND 9 1,HUHRF1,UBIQUITIN-LIKE-CONTAINING PHD AND RING FINGER DOMAINS COMPND 10 PROTEIN 1; COMPND 11 EC: 2.3.2.27; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 2; COMPND 14 MOLECULE: DEVELOPMENTAL PLURIPOTENCY-ASSOCIATED PROTEIN 3; COMPND 15 CHAIN: C, D; COMPND 16 SYNONYM: COMPACTION-ASSOCIATED PROTEIN 1,PRIMORDIAL GERM CELL PROTEIN COMPND 17 7,STELLA; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: UHRF1, ICBP90, NP95, RNF106; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 11 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 12 ORGANISM_TAXID: 10090 KEYWDS UHFR1, STELLA, COMPLEX, INHIBITOR, GENE REGULATION, GENE REGULATION- KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR X.DU,Q.GAN,J.XU,J.LIU REVDAT 1 06-NOV-24 8XV4 0 JRNL AUTH X.DU,Q.GAN,J.XU,J.LIU JRNL TITL CRYSTAL STRUCTURE OF TTD-PHD DOMAIN OF UHRF1 IN COMPLEX WITH JRNL TITL 2 MSTELLA PEPTIDE (RESIDUES 85-119) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0419 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 3 NUMBER OF REFLECTIONS : 9234 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.500 REMARK 3 FREE R VALUE TEST SET COUNT : 439 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 634 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.20 REMARK 3 BIN R VALUE (WORKING SET) : 0.3190 REMARK 3 BIN FREE R VALUE SET COUNT : 32 REMARK 3 BIN FREE R VALUE : 0.3990 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4012 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 10 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 65.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.36000 REMARK 3 B22 (A**2) : -5.09000 REMARK 3 B33 (A**2) : 7.29000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.94000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.579 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.455 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 27.876 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.906 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.871 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4118 ; 0.004 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 3892 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5553 ; 1.055 ; 1.864 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8920 ; 0.404 ; 1.811 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 487 ; 6.679 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 52 ; 3.835 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 735 ;13.513 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 585 ; 0.050 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4967 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 993 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1966 ; 2.952 ; 6.488 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1966 ; 2.949 ; 6.488 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2447 ; 5.041 ;11.656 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2448 ; 5.041 ;11.658 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2152 ; 2.653 ; 6.772 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2153 ; 2.652 ; 6.775 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3107 ; 4.585 ;12.376 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4308 ; 7.454 ;61.720 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4309 ; 7.454 ;61.730 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8XV4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 16-JAN-24. REMARK 100 THE DEPOSITION ID IS D_1300044228. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-DEC-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL02U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 S 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9681 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 19.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : 0.16600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.46 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.44700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.6 M NACL, 0.1 M MES PH6.5, 20% REMARK 280 PEG4000, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 70.85650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.18250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 70.85650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 36.18250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 129 REMARK 465 PRO A 130 REMARK 465 LEU A 131 REMARK 465 GLY A 132 REMARK 465 SER A 133 REMARK 465 ASP A 291 REMARK 465 ASP A 366 REMARK 465 GLY B 129 REMARK 465 PRO B 130 REMARK 465 LEU B 131 REMARK 465 GLY B 132 REMARK 465 SER B 133 REMARK 465 ASP B 263 REMARK 465 ASP B 264 REMARK 465 ASP B 366 REMARK 465 LYS C 85 REMARK 465 ARG C 86 REMARK 465 ARG C 87 REMARK 465 LYS C 113 REMARK 465 ARG C 114 REMARK 465 LEU C 115 REMARK 465 GLU C 116 REMARK 465 GLY C 117 REMARK 465 ASN C 118 REMARK 465 GLU C 119 REMARK 465 LYS D 85 REMARK 465 ARG D 86 REMARK 465 ARG D 87 REMARK 465 LYS D 113 REMARK 465 ARG D 114 REMARK 465 LEU D 115 REMARK 465 GLU D 116 REMARK 465 GLY D 117 REMARK 465 ASN D 118 REMARK 465 GLU D 119 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS B 306 CB - CA - C ANGL. DEV. = 16.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 138 -6.29 80.52 REMARK 500 ASN A 231 85.64 -152.87 REMARK 500 LEU A 261 -157.20 -112.61 REMARK 500 ASP A 264 -158.43 -157.67 REMARK 500 GLU A 276 58.89 -107.63 REMARK 500 ALA A 317 -157.85 -104.13 REMARK 500 LYS A 329 47.00 -103.00 REMARK 500 SER A 354 70.01 -100.68 REMARK 500 ASP A 356 -77.58 -69.17 REMARK 500 ARG A 364 62.14 64.00 REMARK 500 ASN B 138 -8.29 81.32 REMARK 500 ASN B 231 86.33 -152.28 REMARK 500 GLU B 276 57.75 -107.22 REMARK 500 LYS B 306 -122.82 56.74 REMARK 500 ALA B 317 -159.97 -103.12 REMARK 500 LYS B 329 47.85 -103.00 REMARK 500 ASP B 356 -78.00 -67.89 REMARK 500 ARG B 364 61.25 64.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 302 SG REMARK 620 2 CYS A 305 SG 104.4 REMARK 620 3 CYS A 313 SG 133.0 115.6 REMARK 620 4 CYS A 316 SG 90.2 78.5 120.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 304 NE2 REMARK 620 2 HIS B 304 NE2 106.2 REMARK 620 3 GLU C 109 OE1 124.4 100.5 REMARK 620 4 GLU D 109 OE1 103.2 129.1 95.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 318 SG REMARK 620 2 CYS A 321 SG 114.1 REMARK 620 3 HIS A 341 ND1 103.3 97.4 REMARK 620 4 CYS A 344 SG 120.6 113.1 104.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 333 SG REMARK 620 2 CYS A 336 SG 99.0 REMARK 620 3 CYS A 360 SG 112.5 118.2 REMARK 620 4 CYS A 363 SG 104.3 120.1 102.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 302 SG REMARK 620 2 CYS B 305 SG 99.4 REMARK 620 3 CYS B 313 SG 139.6 110.4 REMARK 620 4 CYS B 316 SG 89.1 79.8 121.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 318 SG REMARK 620 2 CYS B 321 SG 109.5 REMARK 620 3 HIS B 341 ND1 103.2 97.0 REMARK 620 4 CYS B 344 SG 122.7 115.8 104.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1003 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 333 SG REMARK 620 2 CYS B 336 SG 98.2 REMARK 620 3 CYS B 360 SG 110.8 118.8 REMARK 620 4 CYS B 363 SG 104.2 121.0 102.7 REMARK 620 N 1 2 3 DBREF 8XV4 A 134 366 UNP Q96T88 UHRF1_HUMAN 134 366 DBREF 8XV4 B 134 366 UNP Q96T88 UHRF1_HUMAN 134 366 DBREF 8XV4 C 85 119 UNP Q8QZY3 DPPA3_MOUSE 85 119 DBREF 8XV4 D 85 119 UNP Q8QZY3 DPPA3_MOUSE 85 119 SEQADV 8XV4 GLY A 129 UNP Q96T88 EXPRESSION TAG SEQADV 8XV4 PRO A 130 UNP Q96T88 EXPRESSION TAG SEQADV 8XV4 LEU A 131 UNP Q96T88 EXPRESSION TAG SEQADV 8XV4 GLY A 132 UNP Q96T88 EXPRESSION TAG SEQADV 8XV4 SER A 133 UNP Q96T88 EXPRESSION TAG SEQADV 8XV4 A UNP Q96T88 SER 165 DELETION SEQADV 8XV4 A UNP Q96T88 ARG 166 DELETION SEQADV 8XV4 A UNP Q96T88 ASP 167 DELETION SEQADV 8XV4 A UNP Q96T88 GLU 168 DELETION SEQADV 8XV4 A UNP Q96T88 PRO 169 DELETION SEQADV 8XV4 A UNP Q96T88 CYS 170 DELETION SEQADV 8XV4 A UNP Q96T88 SER 171 DELETION SEQADV 8XV4 A UNP Q96T88 SER 172 DELETION SEQADV 8XV4 A UNP Q96T88 THR 173 DELETION SEQADV 8XV4 GLY B 129 UNP Q96T88 EXPRESSION TAG SEQADV 8XV4 PRO B 130 UNP Q96T88 EXPRESSION TAG SEQADV 8XV4 LEU B 131 UNP Q96T88 EXPRESSION TAG SEQADV 8XV4 GLY B 132 UNP Q96T88 EXPRESSION TAG SEQADV 8XV4 SER B 133 UNP Q96T88 EXPRESSION TAG SEQADV 8XV4 B UNP Q96T88 SER 165 DELETION SEQADV 8XV4 B UNP Q96T88 ARG 166 DELETION SEQADV 8XV4 B UNP Q96T88 ASP 167 DELETION SEQADV 8XV4 B UNP Q96T88 GLU 168 DELETION SEQADV 8XV4 B UNP Q96T88 PRO 169 DELETION SEQADV 8XV4 B UNP Q96T88 CYS 170 DELETION SEQADV 8XV4 B UNP Q96T88 SER 171 DELETION SEQADV 8XV4 B UNP Q96T88 SER 172 DELETION SEQADV 8XV4 B UNP Q96T88 THR 173 DELETION SEQRES 1 A 229 GLY PRO LEU GLY SER LEU TYR LYS VAL ASN GLU TYR VAL SEQRES 2 A 229 ASP ALA ARG ASP THR ASN MET GLY ALA TRP PHE GLU ALA SEQRES 3 A 229 GLN VAL VAL ARG VAL THR ARG LYS ALA PRO SER ARG PRO SEQRES 4 A 229 ALA LEU GLU GLU ASP VAL ILE TYR HIS VAL LYS TYR ASP SEQRES 5 A 229 ASP TYR PRO GLU ASN GLY VAL VAL GLN MET ASN SER ARG SEQRES 6 A 229 ASP VAL ARG ALA ARG ALA ARG THR ILE ILE LYS TRP GLN SEQRES 7 A 229 ASP LEU GLU VAL GLY GLN VAL VAL MET LEU ASN TYR ASN SEQRES 8 A 229 PRO ASP ASN PRO LYS GLU ARG GLY PHE TRP TYR ASP ALA SEQRES 9 A 229 GLU ILE SER ARG LYS ARG GLU THR ARG THR ALA ARG GLU SEQRES 10 A 229 LEU TYR ALA ASN VAL VAL LEU GLY ASP ASP SER LEU ASN SEQRES 11 A 229 ASP CYS ARG ILE ILE PHE VAL ASP GLU VAL PHE LYS ILE SEQRES 12 A 229 GLU ARG PRO GLY GLU GLY SER PRO MET VAL ASP ASN PRO SEQRES 13 A 229 MET ARG ARG LYS SER GLY PRO SER CYS LYS HIS CYS LYS SEQRES 14 A 229 ASP ASP VAL ASN ARG LEU CYS ARG VAL CYS ALA CYS HIS SEQRES 15 A 229 LEU CYS GLY GLY ARG GLN ASP PRO ASP LYS GLN LEU MET SEQRES 16 A 229 CYS ASP GLU CYS ASP MET ALA PHE HIS ILE TYR CYS LEU SEQRES 17 A 229 ASP PRO PRO LEU SER SER VAL PRO SER GLU ASP GLU TRP SEQRES 18 A 229 TYR CYS PRO GLU CYS ARG ASN ASP SEQRES 1 B 229 GLY PRO LEU GLY SER LEU TYR LYS VAL ASN GLU TYR VAL SEQRES 2 B 229 ASP ALA ARG ASP THR ASN MET GLY ALA TRP PHE GLU ALA SEQRES 3 B 229 GLN VAL VAL ARG VAL THR ARG LYS ALA PRO SER ARG PRO SEQRES 4 B 229 ALA LEU GLU GLU ASP VAL ILE TYR HIS VAL LYS TYR ASP SEQRES 5 B 229 ASP TYR PRO GLU ASN GLY VAL VAL GLN MET ASN SER ARG SEQRES 6 B 229 ASP VAL ARG ALA ARG ALA ARG THR ILE ILE LYS TRP GLN SEQRES 7 B 229 ASP LEU GLU VAL GLY GLN VAL VAL MET LEU ASN TYR ASN SEQRES 8 B 229 PRO ASP ASN PRO LYS GLU ARG GLY PHE TRP TYR ASP ALA SEQRES 9 B 229 GLU ILE SER ARG LYS ARG GLU THR ARG THR ALA ARG GLU SEQRES 10 B 229 LEU TYR ALA ASN VAL VAL LEU GLY ASP ASP SER LEU ASN SEQRES 11 B 229 ASP CYS ARG ILE ILE PHE VAL ASP GLU VAL PHE LYS ILE SEQRES 12 B 229 GLU ARG PRO GLY GLU GLY SER PRO MET VAL ASP ASN PRO SEQRES 13 B 229 MET ARG ARG LYS SER GLY PRO SER CYS LYS HIS CYS LYS SEQRES 14 B 229 ASP ASP VAL ASN ARG LEU CYS ARG VAL CYS ALA CYS HIS SEQRES 15 B 229 LEU CYS GLY GLY ARG GLN ASP PRO ASP LYS GLN LEU MET SEQRES 16 B 229 CYS ASP GLU CYS ASP MET ALA PHE HIS ILE TYR CYS LEU SEQRES 17 B 229 ASP PRO PRO LEU SER SER VAL PRO SER GLU ASP GLU TRP SEQRES 18 B 229 TYR CYS PRO GLU CYS ARG ASN ASP SEQRES 1 C 35 LYS ARG ARG VAL ARG THR LEU LEU SER VAL LEU LYS ASP SEQRES 2 C 35 PRO ILE ALA LYS MET ARG ARG LEU VAL ARG ILE GLU GLN SEQRES 3 C 35 ARG GLN LYS ARG LEU GLU GLY ASN GLU SEQRES 1 D 35 LYS ARG ARG VAL ARG THR LEU LEU SER VAL LEU LYS ASP SEQRES 2 D 35 PRO ILE ALA LYS MET ARG ARG LEU VAL ARG ILE GLU GLN SEQRES 3 D 35 ARG GLN LYS ARG LEU GLU GLY ASN GLU HET ZN A 401 1 HET ZN A 402 1 HET ZN A 403 1 HET ZN A 404 1 HET ZN B1001 1 HET ZN B1002 1 HET ZN B1003 1 HETNAM ZN ZINC ION FORMUL 5 ZN 7(ZN 2+) FORMUL 12 HOH *10(H2 O) HELIX 1 AA1 TYR A 191 ASN A 194 5 4 HELIX 2 AA2 LYS A 213 LEU A 217 5 5 HELIX 3 AA3 ASP A 326 ASP A 328 5 3 HELIX 4 AA4 TYR B 191 ASN B 194 5 4 HELIX 5 AA5 LYS B 213 LEU B 217 5 5 HELIX 6 AA6 ASP B 326 ASP B 328 5 3 HELIX 7 AA7 THR C 90 ASP C 97 1 8 HELIX 8 AA8 ASP C 97 GLN C 110 1 14 HELIX 9 AA9 THR D 90 ASP D 97 1 8 HELIX 10 AB1 ASP D 97 GLU D 109 1 13 SHEET 1 AA1 5 VAL A 196 ASN A 200 0 SHEET 2 AA1 5 ASP A 181 TYR A 188 -1 N TYR A 184 O MET A 199 SHEET 3 AA1 5 TRP A 151 LYS A 162 -1 N ARG A 158 O HIS A 185 SHEET 4 AA1 5 TYR A 140 ARG A 144 -1 N VAL A 141 O ALA A 154 SHEET 5 AA1 5 VAL A 204 ALA A 206 -1 O ARG A 205 N ASP A 142 SHEET 1 AA2 2 ILE A 211 ILE A 212 0 SHEET 2 AA2 2 VAL A 277 PHE A 278 -1 O VAL A 277 N ILE A 212 SHEET 1 AA3 4 VAL A 222 TYR A 227 0 SHEET 2 AA3 4 PHE A 237 GLU A 248 -1 O TYR A 239 N LEU A 225 SHEET 3 AA3 4 ARG A 253 VAL A 259 -1 O GLU A 254 N ARG A 247 SHEET 4 AA3 4 CYS A 269 ILE A 271 -1 O CYS A 269 N ALA A 257 SHEET 1 AA4 2 GLN A 330 MET A 332 0 SHEET 2 AA4 2 ALA A 339 HIS A 341 -1 O PHE A 340 N LEU A 331 SHEET 1 AA5 5 VAL B 196 ASN B 200 0 SHEET 2 AA5 5 ASP B 181 TYR B 188 -1 N TYR B 184 O MET B 199 SHEET 3 AA5 5 TRP B 151 LYS B 162 -1 N THR B 160 O ILE B 183 SHEET 4 AA5 5 TYR B 140 ARG B 144 -1 N VAL B 141 O ALA B 154 SHEET 5 AA5 5 VAL B 204 ALA B 206 -1 O ARG B 205 N ASP B 142 SHEET 1 AA6 2 ILE B 211 ILE B 212 0 SHEET 2 AA6 2 VAL B 277 PHE B 278 -1 O VAL B 277 N ILE B 212 SHEET 1 AA7 4 VAL B 222 TYR B 227 0 SHEET 2 AA7 4 PHE B 237 GLU B 248 -1 O TYR B 239 N LEU B 225 SHEET 3 AA7 4 ARG B 253 VAL B 259 -1 O GLU B 254 N ARG B 247 SHEET 4 AA7 4 LEU B 266 ILE B 271 -1 O CYS B 269 N ALA B 257 SHEET 1 AA8 2 GLN B 330 MET B 332 0 SHEET 2 AA8 2 ALA B 339 HIS B 341 -1 O PHE B 340 N LEU B 331 LINK SG CYS A 302 ZN ZN A 404 1555 1555 2.32 LINK NE2 HIS A 304 ZN ZN A 402 1555 1555 2.00 LINK SG CYS A 305 ZN ZN A 404 1555 1555 2.33 LINK SG CYS A 313 ZN ZN A 404 1555 1555 2.31 LINK SG CYS A 316 ZN ZN A 404 1555 1555 2.33 LINK SG CYS A 318 ZN ZN A 401 1555 1555 2.33 LINK SG CYS A 321 ZN ZN A 401 1555 1555 2.31 LINK SG CYS A 333 ZN ZN A 403 1555 1555 2.33 LINK SG CYS A 336 ZN ZN A 403 1555 1555 2.34 LINK ND1 HIS A 341 ZN ZN A 401 1555 1555 2.13 LINK SG CYS A 344 ZN ZN A 401 1555 1555 2.34 LINK SG CYS A 360 ZN ZN A 403 1555 1555 2.33 LINK SG CYS A 363 ZN ZN A 403 1555 1555 2.35 LINK ZN ZN A 402 NE2 HIS B 304 1555 1555 2.02 LINK ZN ZN A 402 OE1 GLU C 109 1555 1555 2.02 LINK ZN ZN A 402 OE1 GLU D 109 1555 1555 2.03 LINK SG CYS B 302 ZN ZN B1001 1555 1555 2.34 LINK SG CYS B 305 ZN ZN B1001 1555 1555 2.35 LINK SG CYS B 313 ZN ZN B1001 1555 1555 2.34 LINK SG CYS B 316 ZN ZN B1001 1555 1555 2.32 LINK SG CYS B 318 ZN ZN B1002 1555 1555 2.35 LINK SG CYS B 321 ZN ZN B1002 1555 1555 2.33 LINK SG CYS B 333 ZN ZN B1003 1555 1555 2.34 LINK SG CYS B 336 ZN ZN B1003 1555 1555 2.33 LINK ND1 HIS B 341 ZN ZN B1002 1555 1555 2.14 LINK SG CYS B 344 ZN ZN B1002 1555 1555 2.32 LINK SG CYS B 360 ZN ZN B1003 1555 1555 2.34 LINK SG CYS B 363 ZN ZN B1003 1555 1555 2.35 CISPEP 1 ASP A 346 PRO A 347 0 6.46 CISPEP 2 ASP B 346 PRO B 347 0 9.34 CRYST1 141.713 72.365 63.065 90.00 108.05 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007057 0.000000 0.002300 0.00000 SCALE2 0.000000 0.013819 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016678 0.00000