HEADER OXIDOREDUCTASE 23-JAN-24 8Y11 TITLE CRYSTAL STRUCTURE OF L-2-KETO-3-DEOXYFUCONATE 4-DEHYDROGENASE BOUND TO TITLE 2 NAD(H) AND SULFATE ION COMPND MOL_ID: 1; COMPND 2 MOLECULE: SDR FAMILY OXIDOREDUCTASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HERBASPIRILLUM HUTTIENSE; SOURCE 3 ORGANISM_TAXID: 863372; SOURCE 4 GENE: E2K99_19890; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI DH5[ALPHA]; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 668369 KEYWDS DEHYDROGENASE, ROSSMANN FOLD, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.AKAGASHI,S.WATANABE REVDAT 1 10-JUL-24 8Y11 0 JRNL AUTH M.AKAGASHI,S.WATANABE,S.KWIATKOWSKI,J.DROZAK,S.TERAWAKI, JRNL AUTH 2 Y.WATANABE JRNL TITL CRYSTAL STRUCTURE OF L-2-KETO-3-DEOXYFUCONATE JRNL TITL 2 4-DEHYDROGENASE REVEALS A UNIQUE BINDING MODE AS A JRNL TITL 3 ALPHA-FURANOSYL HEMIKETAL OF SUBSTRATES. JRNL REF SCI REP V. 14 14602 2024 JRNL REFN ESSN 2045-2322 JRNL PMID 38918500 JRNL DOI 10.1038/S41598-024-65627-8 REMARK 2 REMARK 2 RESOLUTION. 1.77 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.77 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 220052 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 10936 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.3900 - 5.5000 1.00 6982 350 0.1799 0.1901 REMARK 3 2 5.5000 - 4.3600 1.00 7013 331 0.1556 0.1794 REMARK 3 3 4.3600 - 3.8100 1.00 6918 391 0.1453 0.1599 REMARK 3 4 3.8100 - 3.4600 1.00 6949 401 0.1473 0.1889 REMARK 3 5 3.4600 - 3.2200 1.00 7003 358 0.1623 0.1807 REMARK 3 6 3.2200 - 3.0300 1.00 6942 369 0.1617 0.2197 REMARK 3 7 3.0300 - 2.8700 1.00 6939 420 0.1722 0.2013 REMARK 3 8 2.8700 - 2.7500 1.00 6951 380 0.1836 0.1937 REMARK 3 9 2.7500 - 2.6400 1.00 6972 330 0.1734 0.2022 REMARK 3 10 2.6400 - 2.5500 1.00 6969 375 0.1697 0.2027 REMARK 3 11 2.5500 - 2.4700 1.00 6929 382 0.1722 0.2068 REMARK 3 12 2.4700 - 2.4000 1.00 6969 390 0.1748 0.2219 REMARK 3 13 2.4000 - 2.3400 1.00 6981 323 0.1799 0.2308 REMARK 3 14 2.3400 - 2.2800 1.00 6982 353 0.1770 0.2277 REMARK 3 15 2.2800 - 2.2300 1.00 7028 330 0.1756 0.2093 REMARK 3 16 2.2300 - 2.1800 1.00 6984 359 0.1818 0.2426 REMARK 3 17 2.1800 - 2.1400 1.00 6960 389 0.1900 0.2163 REMARK 3 18 2.1400 - 2.1000 1.00 6951 357 0.2209 0.2604 REMARK 3 19 2.1000 - 2.0600 1.00 7011 328 0.2187 0.2427 REMARK 3 20 2.0600 - 2.0300 1.00 6956 369 0.2185 0.2490 REMARK 3 21 2.0300 - 1.9900 1.00 6973 394 0.2191 0.2760 REMARK 3 22 1.9900 - 1.9600 1.00 6877 396 0.2226 0.2474 REMARK 3 23 1.9600 - 1.9300 1.00 7059 363 0.2342 0.2887 REMARK 3 24 1.9300 - 1.9100 1.00 6950 353 0.2499 0.2637 REMARK 3 25 1.9100 - 1.8800 1.00 6926 395 0.2705 0.2981 REMARK 3 26 1.8800 - 1.8600 1.00 6970 358 0.2921 0.2983 REMARK 3 27 1.8600 - 1.8300 1.00 6946 344 0.3062 0.3008 REMARK 3 28 1.8300 - 1.8100 1.00 7040 333 0.3313 0.3603 REMARK 3 29 1.8100 - 1.7900 1.00 7012 346 0.3613 0.3878 REMARK 3 30 1.7900 - 1.7700 1.00 6974 369 0.3769 0.3722 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.470 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 7352 REMARK 3 ANGLE : 1.535 9973 REMARK 3 CHIRALITY : 0.088 1190 REMARK 3 PLANARITY : 0.012 1260 REMARK 3 DIHEDRAL : 10.773 1069 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8Y11 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-JAN-24. REMARK 100 THE DEPOSITION ID IS D_1300044639. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-OCT-22 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL45XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 220052 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.770 REMARK 200 RESOLUTION RANGE LOW (A) : 48.390 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 19.84 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.77 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: ALPHAFOLD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LITHIUM SULFATE MONOHYDRATE, 0.1 REMARK 280 M TRIS-HCL PH8.5, 25% PEG4000, EVAPORATION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 42.16850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 66.52900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.94700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 66.52900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.16850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.94700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -9 REMARK 465 ARG A -8 REMARK 465 GLY A -7 REMARK 465 SER A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 ALA A 3 REMARK 465 SER A 4 REMARK 465 THR A 5 REMARK 465 MET B -9 REMARK 465 ARG B -8 REMARK 465 GLY B -7 REMARK 465 SER B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 GLY B 1 REMARK 465 SER B 2 REMARK 465 ALA B 3 REMARK 465 SER B 4 REMARK 465 GLN B 196 REMARK 465 ALA B 197 REMARK 465 LYS B 198 REMARK 465 GLU B 199 REMARK 465 THR B 200 REMARK 465 GLY B 201 REMARK 465 GLU B 204 REMARK 465 ASP B 205 REMARK 465 GLU B 206 REMARK 465 VAL B 207 REMARK 465 ARG B 208 REMARK 465 MET C -9 REMARK 465 ARG C -8 REMARK 465 GLY C -7 REMARK 465 SER C -6 REMARK 465 HIS C -5 REMARK 465 HIS C -4 REMARK 465 HIS C -3 REMARK 465 HIS C -2 REMARK 465 HIS C -1 REMARK 465 HIS C 0 REMARK 465 GLY C 1 REMARK 465 SER C 2 REMARK 465 ALA C 3 REMARK 465 SER C 4 REMARK 465 ARG C 192 REMARK 465 ILE C 193 REMARK 465 SER C 194 REMARK 465 THR C 195 REMARK 465 GLN C 196 REMARK 465 ALA C 197 REMARK 465 LYS C 198 REMARK 465 GLU C 199 REMARK 465 THR C 200 REMARK 465 GLY C 201 REMARK 465 LYS C 202 REMARK 465 SER C 203 REMARK 465 GLU C 204 REMARK 465 MET D -9 REMARK 465 ARG D -8 REMARK 465 GLY D -7 REMARK 465 SER D -6 REMARK 465 HIS D -5 REMARK 465 HIS D -4 REMARK 465 HIS D -3 REMARK 465 HIS D -2 REMARK 465 HIS D -1 REMARK 465 HIS D 0 REMARK 465 GLY D 1 REMARK 465 SER D 2 REMARK 465 ALA D 3 REMARK 465 SER D 4 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO B 187 CG CD REMARK 470 GLN B 191 CG CD OE1 NE2 REMARK 470 ARG B 192 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 193 CG1 CG2 CD1 REMARK 470 LYS B 202 CG CD CE NZ REMARK 470 SER B 203 OG REMARK 470 PHE B 211 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU C 185 CG CD OE1 OE2 REMARK 470 GLN C 191 CG CD OE1 NE2 REMARK 470 ASP C 205 CG OD1 OD2 REMARK 470 GLU C 206 CG CD OE1 OE2 REMARK 470 PHE C 211 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG C 214 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 32 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 48 CG CD OE1 OE2 REMARK 470 LYS D 100 CG CD CE NZ REMARK 470 GLN D 191 CG CD OE1 NE2 REMARK 470 LYS D 198 CG CD CE NZ REMARK 470 GLU D 199 CG CD OE1 OE2 REMARK 470 THR D 200 OG1 CG2 REMARK 470 GLU D 206 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 136 -119.96 -97.20 REMARK 500 SER A 140 -136.30 -174.04 REMARK 500 ALA B 136 -119.72 -95.82 REMARK 500 SER B 140 -138.59 -171.22 REMARK 500 ALA C 110 -53.49 -120.86 REMARK 500 ALA C 136 -122.15 -96.63 REMARK 500 SER C 140 -136.78 -172.01 REMARK 500 ARG C 148 54.45 -142.62 REMARK 500 VAL C 207 -32.49 53.27 REMARK 500 ARG C 214 5.51 -69.20 REMARK 500 ALA D 110 -53.13 -123.66 REMARK 500 ALA D 136 -120.34 -93.87 REMARK 500 SER D 140 -134.78 -166.44 REMARK 500 REMARK 500 REMARK: NULL DBREF1 8Y11 A 2 254 UNP A0A4P7ABK7_9BURK DBREF2 8Y11 A A0A4P7ABK7 2 254 DBREF1 8Y11 B 2 254 UNP A0A4P7ABK7_9BURK DBREF2 8Y11 B A0A4P7ABK7 2 254 DBREF1 8Y11 C 2 254 UNP A0A4P7ABK7_9BURK DBREF2 8Y11 C A0A4P7ABK7 2 254 DBREF1 8Y11 D 2 254 UNP A0A4P7ABK7_9BURK DBREF2 8Y11 D A0A4P7ABK7 2 254 SEQADV 8Y11 MET A -9 UNP A0A4P7ABK INITIATING METHIONINE SEQADV 8Y11 ARG A -8 UNP A0A4P7ABK EXPRESSION TAG SEQADV 8Y11 GLY A -7 UNP A0A4P7ABK EXPRESSION TAG SEQADV 8Y11 SER A -6 UNP A0A4P7ABK EXPRESSION TAG SEQADV 8Y11 HIS A -5 UNP A0A4P7ABK EXPRESSION TAG SEQADV 8Y11 HIS A -4 UNP A0A4P7ABK EXPRESSION TAG SEQADV 8Y11 HIS A -3 UNP A0A4P7ABK EXPRESSION TAG SEQADV 8Y11 HIS A -2 UNP A0A4P7ABK EXPRESSION TAG SEQADV 8Y11 HIS A -1 UNP A0A4P7ABK EXPRESSION TAG SEQADV 8Y11 HIS A 0 UNP A0A4P7ABK EXPRESSION TAG SEQADV 8Y11 GLY A 1 UNP A0A4P7ABK EXPRESSION TAG SEQADV 8Y11 MET B -9 UNP A0A4P7ABK INITIATING METHIONINE SEQADV 8Y11 ARG B -8 UNP A0A4P7ABK EXPRESSION TAG SEQADV 8Y11 GLY B -7 UNP A0A4P7ABK EXPRESSION TAG SEQADV 8Y11 SER B -6 UNP A0A4P7ABK EXPRESSION TAG SEQADV 8Y11 HIS B -5 UNP A0A4P7ABK EXPRESSION TAG SEQADV 8Y11 HIS B -4 UNP A0A4P7ABK EXPRESSION TAG SEQADV 8Y11 HIS B -3 UNP A0A4P7ABK EXPRESSION TAG SEQADV 8Y11 HIS B -2 UNP A0A4P7ABK EXPRESSION TAG SEQADV 8Y11 HIS B -1 UNP A0A4P7ABK EXPRESSION TAG SEQADV 8Y11 HIS B 0 UNP A0A4P7ABK EXPRESSION TAG SEQADV 8Y11 GLY B 1 UNP A0A4P7ABK EXPRESSION TAG SEQADV 8Y11 MET C -9 UNP A0A4P7ABK INITIATING METHIONINE SEQADV 8Y11 ARG C -8 UNP A0A4P7ABK EXPRESSION TAG SEQADV 8Y11 GLY C -7 UNP A0A4P7ABK EXPRESSION TAG SEQADV 8Y11 SER C -6 UNP A0A4P7ABK EXPRESSION TAG SEQADV 8Y11 HIS C -5 UNP A0A4P7ABK EXPRESSION TAG SEQADV 8Y11 HIS C -4 UNP A0A4P7ABK EXPRESSION TAG SEQADV 8Y11 HIS C -3 UNP A0A4P7ABK EXPRESSION TAG SEQADV 8Y11 HIS C -2 UNP A0A4P7ABK EXPRESSION TAG SEQADV 8Y11 HIS C -1 UNP A0A4P7ABK EXPRESSION TAG SEQADV 8Y11 HIS C 0 UNP A0A4P7ABK EXPRESSION TAG SEQADV 8Y11 GLY C 1 UNP A0A4P7ABK EXPRESSION TAG SEQADV 8Y11 MET D -9 UNP A0A4P7ABK INITIATING METHIONINE SEQADV 8Y11 ARG D -8 UNP A0A4P7ABK EXPRESSION TAG SEQADV 8Y11 GLY D -7 UNP A0A4P7ABK EXPRESSION TAG SEQADV 8Y11 SER D -6 UNP A0A4P7ABK EXPRESSION TAG SEQADV 8Y11 HIS D -5 UNP A0A4P7ABK EXPRESSION TAG SEQADV 8Y11 HIS D -4 UNP A0A4P7ABK EXPRESSION TAG SEQADV 8Y11 HIS D -3 UNP A0A4P7ABK EXPRESSION TAG SEQADV 8Y11 HIS D -2 UNP A0A4P7ABK EXPRESSION TAG SEQADV 8Y11 HIS D -1 UNP A0A4P7ABK EXPRESSION TAG SEQADV 8Y11 HIS D 0 UNP A0A4P7ABK EXPRESSION TAG SEQADV 8Y11 GLY D 1 UNP A0A4P7ABK EXPRESSION TAG SEQRES 1 A 264 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER ALA SEQRES 2 A 264 SER THR GLY ARG LEU ALA GLY LYS THR VAL LEU ILE THR SEQRES 3 A 264 ALA ALA ALA GLN GLY ILE GLY ARG ALA SER THR GLU LEU SEQRES 4 A 264 PHE ALA ARG GLU GLY ALA ARG VAL ILE ALA THR ASP ILE SEQRES 5 A 264 SER LYS THR HIS LEU GLU GLU LEU ALA SER ILE ALA GLY SEQRES 6 A 264 VAL GLU THR HIS LEU LEU ASP VAL THR ASP ASP ASP ALA SEQRES 7 A 264 ILE LYS ALA LEU VAL ALA LYS VAL GLY THR VAL ASP VAL SEQRES 8 A 264 LEU PHE ASN CYS ALA GLY TYR VAL ALA ALA GLY ASN ILE SEQRES 9 A 264 LEU GLU CYS ASP ASP LYS ALA TRP ASP PHE SER PHE ASN SEQRES 10 A 264 LEU ASN ALA LYS ALA MET PHE HIS THR ILE ARG ALA VAL SEQRES 11 A 264 LEU PRO GLY MET LEU ALA LYS LYS ALA GLY SER ILE VAL SEQRES 12 A 264 ASN ILE ALA SER ALA ALA SER SER VAL LYS GLY VAL ALA SEQRES 13 A 264 ASN ARG PHE ALA TYR GLY ALA SER LYS ALA ALA VAL VAL SEQRES 14 A 264 GLY LEU THR LYS SER VAL ALA ALA ASP PHE VAL SER GLN SEQRES 15 A 264 GLY ILE ARG CYS ASN ALA ILE CYS PRO GLY THR ILE GLU SEQRES 16 A 264 SER PRO SER LEU ASN GLN ARG ILE SER THR GLN ALA LYS SEQRES 17 A 264 GLU THR GLY LYS SER GLU ASP GLU VAL ARG ALA ALA PHE SEQRES 18 A 264 VAL ALA ARG GLN PRO MET GLY ARG ILE GLY LYS ALA GLU SEQRES 19 A 264 GLU VAL ALA ALA LEU ALA LEU TYR LEU ALA SER ASP GLU SEQRES 20 A 264 SER ASN PHE THR THR GLY SER ILE HIS MET ILE ASP GLY SEQRES 21 A 264 GLY TRP SER ASN SEQRES 1 B 264 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER ALA SEQRES 2 B 264 SER THR GLY ARG LEU ALA GLY LYS THR VAL LEU ILE THR SEQRES 3 B 264 ALA ALA ALA GLN GLY ILE GLY ARG ALA SER THR GLU LEU SEQRES 4 B 264 PHE ALA ARG GLU GLY ALA ARG VAL ILE ALA THR ASP ILE SEQRES 5 B 264 SER LYS THR HIS LEU GLU GLU LEU ALA SER ILE ALA GLY SEQRES 6 B 264 VAL GLU THR HIS LEU LEU ASP VAL THR ASP ASP ASP ALA SEQRES 7 B 264 ILE LYS ALA LEU VAL ALA LYS VAL GLY THR VAL ASP VAL SEQRES 8 B 264 LEU PHE ASN CYS ALA GLY TYR VAL ALA ALA GLY ASN ILE SEQRES 9 B 264 LEU GLU CYS ASP ASP LYS ALA TRP ASP PHE SER PHE ASN SEQRES 10 B 264 LEU ASN ALA LYS ALA MET PHE HIS THR ILE ARG ALA VAL SEQRES 11 B 264 LEU PRO GLY MET LEU ALA LYS LYS ALA GLY SER ILE VAL SEQRES 12 B 264 ASN ILE ALA SER ALA ALA SER SER VAL LYS GLY VAL ALA SEQRES 13 B 264 ASN ARG PHE ALA TYR GLY ALA SER LYS ALA ALA VAL VAL SEQRES 14 B 264 GLY LEU THR LYS SER VAL ALA ALA ASP PHE VAL SER GLN SEQRES 15 B 264 GLY ILE ARG CYS ASN ALA ILE CYS PRO GLY THR ILE GLU SEQRES 16 B 264 SER PRO SER LEU ASN GLN ARG ILE SER THR GLN ALA LYS SEQRES 17 B 264 GLU THR GLY LYS SER GLU ASP GLU VAL ARG ALA ALA PHE SEQRES 18 B 264 VAL ALA ARG GLN PRO MET GLY ARG ILE GLY LYS ALA GLU SEQRES 19 B 264 GLU VAL ALA ALA LEU ALA LEU TYR LEU ALA SER ASP GLU SEQRES 20 B 264 SER ASN PHE THR THR GLY SER ILE HIS MET ILE ASP GLY SEQRES 21 B 264 GLY TRP SER ASN SEQRES 1 C 264 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER ALA SEQRES 2 C 264 SER THR GLY ARG LEU ALA GLY LYS THR VAL LEU ILE THR SEQRES 3 C 264 ALA ALA ALA GLN GLY ILE GLY ARG ALA SER THR GLU LEU SEQRES 4 C 264 PHE ALA ARG GLU GLY ALA ARG VAL ILE ALA THR ASP ILE SEQRES 5 C 264 SER LYS THR HIS LEU GLU GLU LEU ALA SER ILE ALA GLY SEQRES 6 C 264 VAL GLU THR HIS LEU LEU ASP VAL THR ASP ASP ASP ALA SEQRES 7 C 264 ILE LYS ALA LEU VAL ALA LYS VAL GLY THR VAL ASP VAL SEQRES 8 C 264 LEU PHE ASN CYS ALA GLY TYR VAL ALA ALA GLY ASN ILE SEQRES 9 C 264 LEU GLU CYS ASP ASP LYS ALA TRP ASP PHE SER PHE ASN SEQRES 10 C 264 LEU ASN ALA LYS ALA MET PHE HIS THR ILE ARG ALA VAL SEQRES 11 C 264 LEU PRO GLY MET LEU ALA LYS LYS ALA GLY SER ILE VAL SEQRES 12 C 264 ASN ILE ALA SER ALA ALA SER SER VAL LYS GLY VAL ALA SEQRES 13 C 264 ASN ARG PHE ALA TYR GLY ALA SER LYS ALA ALA VAL VAL SEQRES 14 C 264 GLY LEU THR LYS SER VAL ALA ALA ASP PHE VAL SER GLN SEQRES 15 C 264 GLY ILE ARG CYS ASN ALA ILE CYS PRO GLY THR ILE GLU SEQRES 16 C 264 SER PRO SER LEU ASN GLN ARG ILE SER THR GLN ALA LYS SEQRES 17 C 264 GLU THR GLY LYS SER GLU ASP GLU VAL ARG ALA ALA PHE SEQRES 18 C 264 VAL ALA ARG GLN PRO MET GLY ARG ILE GLY LYS ALA GLU SEQRES 19 C 264 GLU VAL ALA ALA LEU ALA LEU TYR LEU ALA SER ASP GLU SEQRES 20 C 264 SER ASN PHE THR THR GLY SER ILE HIS MET ILE ASP GLY SEQRES 21 C 264 GLY TRP SER ASN SEQRES 1 D 264 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER ALA SEQRES 2 D 264 SER THR GLY ARG LEU ALA GLY LYS THR VAL LEU ILE THR SEQRES 3 D 264 ALA ALA ALA GLN GLY ILE GLY ARG ALA SER THR GLU LEU SEQRES 4 D 264 PHE ALA ARG GLU GLY ALA ARG VAL ILE ALA THR ASP ILE SEQRES 5 D 264 SER LYS THR HIS LEU GLU GLU LEU ALA SER ILE ALA GLY SEQRES 6 D 264 VAL GLU THR HIS LEU LEU ASP VAL THR ASP ASP ASP ALA SEQRES 7 D 264 ILE LYS ALA LEU VAL ALA LYS VAL GLY THR VAL ASP VAL SEQRES 8 D 264 LEU PHE ASN CYS ALA GLY TYR VAL ALA ALA GLY ASN ILE SEQRES 9 D 264 LEU GLU CYS ASP ASP LYS ALA TRP ASP PHE SER PHE ASN SEQRES 10 D 264 LEU ASN ALA LYS ALA MET PHE HIS THR ILE ARG ALA VAL SEQRES 11 D 264 LEU PRO GLY MET LEU ALA LYS LYS ALA GLY SER ILE VAL SEQRES 12 D 264 ASN ILE ALA SER ALA ALA SER SER VAL LYS GLY VAL ALA SEQRES 13 D 264 ASN ARG PHE ALA TYR GLY ALA SER LYS ALA ALA VAL VAL SEQRES 14 D 264 GLY LEU THR LYS SER VAL ALA ALA ASP PHE VAL SER GLN SEQRES 15 D 264 GLY ILE ARG CYS ASN ALA ILE CYS PRO GLY THR ILE GLU SEQRES 16 D 264 SER PRO SER LEU ASN GLN ARG ILE SER THR GLN ALA LYS SEQRES 17 D 264 GLU THR GLY LYS SER GLU ASP GLU VAL ARG ALA ALA PHE SEQRES 18 D 264 VAL ALA ARG GLN PRO MET GLY ARG ILE GLY LYS ALA GLU SEQRES 19 D 264 GLU VAL ALA ALA LEU ALA LEU TYR LEU ALA SER ASP GLU SEQRES 20 D 264 SER ASN PHE THR THR GLY SER ILE HIS MET ILE ASP GLY SEQRES 21 D 264 GLY TRP SER ASN HET NAD A 301 44 HET SO4 A 302 5 HET SO4 A 303 5 HET PEG A 304 7 HET NAD B 301 44 HET SO4 B 302 5 HET SO4 B 303 5 HET PEG B 304 7 HET TRS B 305 8 HET SO4 C 301 5 HET GOL C 302 6 HET NAD D 301 44 HET SO4 D 302 5 HET SO4 D 303 5 HET GOL D 304 6 HET PEG D 305 7 HET PEG D 306 7 HET PEG D 307 7 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM SO4 SULFATE ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM GOL GLYCEROL HETSYN TRS TRIS BUFFER HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 NAD 3(C21 H27 N7 O14 P2) FORMUL 6 SO4 7(O4 S 2-) FORMUL 8 PEG 5(C4 H10 O3) FORMUL 13 TRS C4 H12 N O3 1+ FORMUL 15 GOL 2(C3 H8 O3) FORMUL 23 HOH *464(H2 O) HELIX 1 AA1 GLN A 20 GLU A 33 1 14 HELIX 2 AA2 SER A 43 GLU A 48 1 6 HELIX 3 AA3 GLU A 49 ILE A 53 5 5 HELIX 4 AA4 ASP A 65 GLY A 77 1 13 HELIX 5 AA5 ASP A 98 ALA A 110 1 13 HELIX 6 AA6 ALA A 110 LYS A 128 1 19 HELIX 7 AA7 ARG A 148 VAL A 170 1 23 HELIX 8 AA8 SER A 186 GLY A 201 1 16 HELIX 9 AA9 SER A 203 ARG A 214 1 12 HELIX 10 AB1 LYS A 222 SER A 235 1 14 HELIX 11 AB2 ASP A 236 ASN A 239 5 4 HELIX 12 AB3 GLN B 20 GLU B 33 1 14 HELIX 13 AB4 SER B 43 SER B 52 1 10 HELIX 14 AB5 ASP B 65 GLY B 77 1 13 HELIX 15 AB6 ASP B 98 ALA B 110 1 13 HELIX 16 AB7 ALA B 110 LYS B 128 1 19 HELIX 17 AB8 ARG B 148 VAL B 170 1 23 HELIX 18 AB9 SER B 186 THR B 195 1 10 HELIX 19 AC1 ALA B 210 GLN B 215 5 6 HELIX 20 AC2 LYS B 222 SER B 235 1 14 HELIX 21 AC3 ASP B 236 ASN B 239 5 4 HELIX 22 AC4 GLN C 20 GLU C 33 1 14 HELIX 23 AC5 SER C 43 GLU C 49 1 7 HELIX 24 AC6 ASP C 65 GLY C 77 1 13 HELIX 25 AC7 ASP C 98 ALA C 110 1 13 HELIX 26 AC8 ALA C 110 LYS C 128 1 19 HELIX 27 AC9 ARG C 148 VAL C 170 1 23 HELIX 28 AD1 SER C 186 GLN C 191 1 6 HELIX 29 AD2 VAL C 207 VAL C 212 1 6 HELIX 30 AD3 LYS C 222 SER C 235 1 14 HELIX 31 AD4 ASP C 236 ASN C 239 5 4 HELIX 32 AD5 GLN D 20 GLU D 33 1 14 HELIX 33 AD6 SER D 43 GLU D 49 1 7 HELIX 34 AD7 ASP D 65 GLY D 77 1 13 HELIX 35 AD8 ASN D 93 CYS D 97 5 5 HELIX 36 AD9 ASP D 98 ALA D 110 1 13 HELIX 37 AE1 ALA D 110 LYS D 128 1 19 HELIX 38 AE2 ARG D 148 VAL D 170 1 23 HELIX 39 AE3 SER D 186 GLY D 201 1 16 HELIX 40 AE4 SER D 203 ARG D 214 1 12 HELIX 41 AE5 LYS D 222 SER D 235 1 14 HELIX 42 AE6 ASP D 236 ASN D 239 5 4 SHEET 1 AA1 7 VAL A 56 LEU A 60 0 SHEET 2 AA1 7 ARG A 36 ASP A 41 1 N VAL A 37 O GLU A 57 SHEET 3 AA1 7 THR A 12 ILE A 15 1 N VAL A 13 O ILE A 38 SHEET 4 AA1 7 VAL A 81 ASN A 84 1 O PHE A 83 N LEU A 14 SHEET 5 AA1 7 GLY A 130 ILE A 135 1 O VAL A 133 N LEU A 82 SHEET 6 AA1 7 ILE A 174 PRO A 181 1 O ILE A 179 N ASN A 134 SHEET 7 AA1 7 ILE A 245 ILE A 248 1 O HIS A 246 N CYS A 180 SHEET 1 AA2 7 VAL B 56 LEU B 60 0 SHEET 2 AA2 7 ARG B 36 ASP B 41 1 N VAL B 37 O GLU B 57 SHEET 3 AA2 7 THR B 12 ILE B 15 1 N VAL B 13 O ILE B 38 SHEET 4 AA2 7 VAL B 81 ASN B 84 1 O PHE B 83 N LEU B 14 SHEET 5 AA2 7 GLY B 130 ILE B 135 1 O VAL B 133 N LEU B 82 SHEET 6 AA2 7 ILE B 174 PRO B 181 1 O ILE B 179 N ASN B 134 SHEET 7 AA2 7 ILE B 245 ILE B 248 1 O HIS B 246 N CYS B 180 SHEET 1 AA3 7 VAL C 56 LEU C 60 0 SHEET 2 AA3 7 ARG C 36 ASP C 41 1 N VAL C 37 O GLU C 57 SHEET 3 AA3 7 THR C 12 ILE C 15 1 N VAL C 13 O ILE C 38 SHEET 4 AA3 7 VAL C 81 ASN C 84 1 O PHE C 83 N LEU C 14 SHEET 5 AA3 7 GLY C 130 ILE C 135 1 O VAL C 133 N LEU C 82 SHEET 6 AA3 7 ILE C 174 PRO C 181 1 O ILE C 179 N ASN C 134 SHEET 7 AA3 7 ILE C 245 ILE C 248 1 O HIS C 246 N CYS C 180 SHEET 1 AA4 7 VAL D 56 LEU D 60 0 SHEET 2 AA4 7 ARG D 36 ASP D 41 1 N VAL D 37 O GLU D 57 SHEET 3 AA4 7 THR D 12 ILE D 15 1 N VAL D 13 O ILE D 38 SHEET 4 AA4 7 VAL D 81 ASN D 84 1 O PHE D 83 N LEU D 14 SHEET 5 AA4 7 GLY D 130 ILE D 135 1 O VAL D 133 N LEU D 82 SHEET 6 AA4 7 ILE D 174 PRO D 181 1 O ILE D 179 N ASN D 134 SHEET 7 AA4 7 ILE D 245 ILE D 248 1 O HIS D 246 N CYS D 180 CRYST1 84.337 103.894 133.058 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011857 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009625 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007516 0.00000