HEADER HYDROLASE 25-JAN-24 8Y1M TITLE XYLANASE R FROM BACILLUS SP. TAR-1 COMPLEXED WITH XYLOBIOSE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDO-1,4-BETA-XYLANASE A; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: XYLANASE A,1,4-BETA-D-XYLAN XYLANOHYDROLASE A; COMPND 5 EC: 3.2.1.8; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SP. TAR1; SOURCE 3 ORGANISM_TAXID: 502601; SOURCE 4 GENE: XYNA, BH2120; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET-21B(+) KEYWDS GH10, THERMOSTABILITY, XYLANASE, XYLOBIOSE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR T.NAKAMURA,K.KUWATA,T.TAKITA,K.MIZUTANI,B.MIKAMI,S.NAKAMURA, AUTHOR 2 K.YASUKAWA REVDAT 1 22-MAY-24 8Y1M 0 JRNL AUTH T.NAKAMURA,T.TAKITA,K.KUWATA,K.MIZUTANI,B.MIKAMI,S.NAKAMURA, JRNL AUTH 2 K.YASUKAWA JRNL TITL ACTIVITY-STABILITY TRADE-OFF OBSERVED IN VARIANTS AT JRNL TITL 2 POSITION 315 OF THE GH10 XYLANASE XYNR. JRNL REF SCI REP V. 14 7767 2024 JRNL REFN ESSN 2045-2322 JRNL PMID 38565938 JRNL DOI 10.1038/S41598-024-57819-Z REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.26 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 82844 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4143 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.2600 - 5.5700 0.96 2698 143 0.1733 0.1814 REMARK 3 2 5.5700 - 4.4300 0.99 2690 141 0.1332 0.1657 REMARK 3 3 4.4300 - 3.8700 0.99 2678 141 0.1167 0.1400 REMARK 3 4 3.8700 - 3.5100 0.98 2650 140 0.1229 0.1635 REMARK 3 5 3.5100 - 3.2600 0.98 2652 139 0.1409 0.1791 REMARK 3 6 3.2600 - 3.0700 0.99 2625 138 0.1503 0.1771 REMARK 3 7 3.0700 - 2.9200 0.99 2664 140 0.1634 0.2272 REMARK 3 8 2.9200 - 2.7900 0.99 2661 140 0.1579 0.2003 REMARK 3 9 2.7900 - 2.6800 1.00 2658 140 0.1616 0.2157 REMARK 3 10 2.6800 - 2.5900 0.99 2659 140 0.1638 0.2018 REMARK 3 11 2.5900 - 2.5100 0.99 2658 140 0.1592 0.1976 REMARK 3 12 2.5100 - 2.4400 0.99 2648 140 0.1578 0.1705 REMARK 3 13 2.4400 - 2.3700 0.99 2676 141 0.1522 0.1924 REMARK 3 14 2.3700 - 2.3100 0.99 2613 137 0.1677 0.1960 REMARK 3 15 2.3100 - 2.2600 0.97 2617 138 0.1936 0.2048 REMARK 3 16 2.2600 - 2.2100 0.95 2503 132 0.2720 0.3506 REMARK 3 17 2.2100 - 2.1700 0.99 2678 141 0.1798 0.2234 REMARK 3 18 2.1700 - 2.1300 0.99 2599 137 0.1712 0.1879 REMARK 3 19 2.1300 - 2.0900 0.99 2671 140 0.1753 0.2325 REMARK 3 20 2.0900 - 2.0500 0.99 2596 137 0.1941 0.2455 REMARK 3 21 2.0500 - 2.0200 0.98 2639 139 0.1861 0.2233 REMARK 3 22 2.0200 - 1.9900 1.00 2649 139 0.1869 0.2221 REMARK 3 23 1.9900 - 1.9600 0.98 2621 138 0.1948 0.2285 REMARK 3 24 1.9600 - 1.9300 0.99 2636 139 0.2097 0.2376 REMARK 3 25 1.9300 - 1.9100 0.97 2533 133 0.3696 0.4379 REMARK 3 26 1.9100 - 1.8800 0.95 2580 136 0.3262 0.4376 REMARK 3 27 1.8800 - 1.8600 0.97 2589 136 0.2331 0.2801 REMARK 3 28 1.8600 - 1.8400 0.97 2548 135 0.2520 0.2724 REMARK 3 29 1.8400 - 1.8200 0.94 2525 133 0.2615 0.2762 REMARK 3 30 1.8200 - 1.8000 0.93 2487 130 0.3279 0.3769 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.218 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.316 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 6447 REMARK 3 ANGLE : 0.865 8792 REMARK 3 CHIRALITY : 0.054 906 REMARK 3 PLANARITY : 0.005 1150 REMARK 3 DIHEDRAL : 15.870 2411 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8Y1M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-JAN-24. REMARK 100 THE DEPOSITION ID IS D_1300044638. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-OCT-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER R 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 82976 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 3.390 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.35 REMARK 200 R MERGE FOR SHELL (I) : 0.47600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.490 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: LECTANGLE PLATE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.02 M CACL2, 0.1 M CH3COONA, 22% V/V REMARK 280 2-METHYL-2,4-PENTANEDIOL, 0.35 M XYLOBIOSE, PH 4.6, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 26.66750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 80 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 90 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 ASN A 1 REMARK 465 MET B 0 REMARK 465 ASN B 1 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG B 202 CA CB CG CD NE CZ NH1 REMARK 480 ARG B 202 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O4 XYP F 1 C2 XYP F 2 2.09 REMARK 500 O4 XYP D 1 C2 XYP D 2 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 31 33.66 -87.06 REMARK 500 ASN A 50 -25.36 -143.98 REMARK 500 GLU A 256 43.94 -141.37 REMARK 500 ILE A 310 -67.18 -106.11 REMARK 500 ASN B 50 -28.20 -143.48 REMARK 500 GLU B 256 43.76 -143.85 REMARK 500 ILE B 310 -67.66 -106.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 875 DISTANCE = 6.30 ANGSTROMS REMARK 525 HOH B 873 DISTANCE = 7.33 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 503 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 19 O REMARK 620 2 ALA A 299 O 107.3 REMARK 620 3 ILE A 302 O 93.9 84.9 REMARK 620 4 PEG A 515 O2 141.4 108.5 103.3 REMARK 620 5 HOH A 790 O 90.2 88.3 172.8 76.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 21 OD1 REMARK 620 2 ASP A 21 OD2 48.0 REMARK 620 3 GLU A 82 OE1 75.4 77.1 REMARK 620 4 GLU A 82 OE2 113.1 79.3 52.0 REMARK 620 5 HOH A 684 O 76.2 98.0 145.3 161.8 REMARK 620 6 HOH A 781 O 129.2 89.3 127.3 75.6 86.4 REMARK 620 7 HOH A 827 O 148.4 163.3 102.5 87.3 91.6 77.7 REMARK 620 8 HOH B 613 O 74.8 120.8 74.7 117.9 79.0 147.9 74.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 505 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 273 OH REMARK 620 2 ASP A 312 O 82.8 REMARK 620 3 ASP A 318 OD1 107.4 155.5 REMARK 620 4 ASP A 318 OD2 91.2 107.0 51.8 REMARK 620 5 ASP A 331 O 109.8 111.4 86.6 137.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 289 OD1 REMARK 620 2 ARG A 348 O 89.3 REMARK 620 3 ASP A 351 OD1 152.4 85.7 REMARK 620 4 GLU A 353 OE1 94.1 176.6 91.3 REMARK 620 5 HOH A 619 O 75.3 83.1 77.2 97.8 REMARK 620 6 HOH A 692 O 142.5 91.3 64.8 85.9 141.9 REMARK 620 7 HOH A 757 O 75.4 82.4 130.4 98.5 147.2 67.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 504 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 289 OD1 REMARK 620 2 ASP A 289 OD2 47.3 REMARK 620 3 GLU A 293 OE2 77.1 115.9 REMARK 620 4 GLU A 353 OE2 76.0 106.2 83.5 REMARK 620 5 HOH A 770 O 89.2 72.8 78.2 158.6 REMARK 620 6 GLU B 14 OE1 99.3 74.4 156.5 73.1 125.3 REMARK 620 7 GLU B 14 OE2 119.6 72.8 150.8 122.3 78.4 50.4 REMARK 620 8 GLN B 17 OE1 158.5 151.8 90.6 85.3 105.6 85.0 79.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 784 O REMARK 620 2 ASP B 21 OD1 77.8 REMARK 620 3 ASP B 21 OD2 125.8 51.2 REMARK 620 4 GLU B 82 OE1 73.5 83.5 82.8 REMARK 620 5 GLU B 82 OE2 118.3 118.9 79.5 53.2 REMARK 620 6 HOH B 693 O 81.4 75.6 99.7 150.1 156.6 REMARK 620 7 HOH B 804 O 147.6 120.2 82.6 131.3 78.5 78.2 REMARK 620 8 HOH B 810 O 78.0 154.3 154.5 97.6 80.5 92.5 78.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 503 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN B 19 O REMARK 620 2 ALA B 299 O 104.1 REMARK 620 3 ILE B 302 O 90.4 82.1 REMARK 620 4 HOH B 818 O 161.3 92.8 83.9 REMARK 620 5 HOH B 823 O 97.3 86.6 167.7 91.7 REMARK 620 6 HOH B 834 O 97.8 158.1 98.4 65.6 90.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 504 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR B 273 OH REMARK 620 2 ASP B 312 O 89.8 REMARK 620 3 ASP B 318 OD1 107.8 150.8 REMARK 620 4 ASP B 318 OD2 94.7 105.2 51.5 REMARK 620 5 ASP B 331 O 108.9 111.9 84.9 135.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 289 OD1 REMARK 620 2 ARG B 348 O 84.6 REMARK 620 3 ASP B 351 OD1 136.3 70.0 REMARK 620 4 ASP B 351 OD1 155.1 86.0 20.5 REMARK 620 5 ASP B 351 OD2 137.5 118.7 48.7 35.5 REMARK 620 6 GLU B 353 OE2 90.5 165.8 121.5 103.5 73.5 REMARK 620 7 HOH B 617 O 74.5 92.0 71.5 82.8 70.0 99.6 REMARK 620 8 HOH B 620 O 142.6 91.8 75.3 60.7 75.9 83.9 142.9 REMARK 620 9 HOH B 725 O 69.5 84.1 138.0 132.2 141.8 81.6 144.0 73.0 REMARK 620 N 1 2 3 4 5 6 7 8 DBREF 8Y1M A 1 351 UNP P07528 XYNA_BACHD 46 396 DBREF 8Y1M B 1 351 UNP P07528 XYNA_BACHD 46 396 SEQADV 8Y1M MET A 0 UNP P07528 INITIATING METHIONINE SEQADV 8Y1M LEU A 352 UNP P07528 EXPRESSION TAG SEQADV 8Y1M GLU A 353 UNP P07528 EXPRESSION TAG SEQADV 8Y1M HIS A 354 UNP P07528 EXPRESSION TAG SEQADV 8Y1M HIS A 355 UNP P07528 EXPRESSION TAG SEQADV 8Y1M HIS A 356 UNP P07528 EXPRESSION TAG SEQADV 8Y1M HIS A 357 UNP P07528 EXPRESSION TAG SEQADV 8Y1M HIS A 358 UNP P07528 EXPRESSION TAG SEQADV 8Y1M HIS A 359 UNP P07528 EXPRESSION TAG SEQADV 8Y1M MET B 0 UNP P07528 INITIATING METHIONINE SEQADV 8Y1M LEU B 352 UNP P07528 EXPRESSION TAG SEQADV 8Y1M GLU B 353 UNP P07528 EXPRESSION TAG SEQADV 8Y1M HIS B 354 UNP P07528 EXPRESSION TAG SEQADV 8Y1M HIS B 355 UNP P07528 EXPRESSION TAG SEQADV 8Y1M HIS B 356 UNP P07528 EXPRESSION TAG SEQADV 8Y1M HIS B 357 UNP P07528 EXPRESSION TAG SEQADV 8Y1M HIS B 358 UNP P07528 EXPRESSION TAG SEQADV 8Y1M HIS B 359 UNP P07528 EXPRESSION TAG SEQRES 1 A 360 MET ASN ASP GLN PRO PHE ALA TRP GLN VAL ALA SER LEU SEQRES 2 A 360 SER GLU ARG TYR GLN GLU GLN PHE ASP ILE GLY ALA ALA SEQRES 3 A 360 VAL GLU PRO TYR GLN LEU GLU GLY ARG GLN ALA GLN ILE SEQRES 4 A 360 LEU LYS HIS HIS TYR ASN SER LEU VAL ALA GLU ASN ALA SEQRES 5 A 360 MET LYS PRO GLU SER LEU GLN PRO ARG GLU GLY GLU TRP SEQRES 6 A 360 ASN TRP GLU GLY ALA ASP LYS ILE VAL GLU PHE ALA ARG SEQRES 7 A 360 LYS HIS ASN MET GLU LEU ARG PHE HIS THR LEU VAL TRP SEQRES 8 A 360 HIS SER GLN VAL PRO GLU TRP PHE PHE ILE ASP GLU ASP SEQRES 9 A 360 GLY ASN ARG MET VAL ASP GLU THR ASP PRO ASP LYS ARG SEQRES 10 A 360 GLU ALA ASN LYS GLN LEU LEU LEU GLU ARG MET GLU ASN SEQRES 11 A 360 HIS ILE LYS THR VAL VAL GLU ARG TYR LYS ASP ASP VAL SEQRES 12 A 360 THR SER TRP ASP VAL VAL ASN GLU VAL ILE ASP ASP GLY SEQRES 13 A 360 GLY GLY LEU ARG GLU SER GLU TRP TYR GLN ILE THR GLY SEQRES 14 A 360 THR ASP TYR ILE LYS VAL ALA PHE GLU THR ALA ARG LYS SEQRES 15 A 360 TYR GLY GLY GLU GLU ALA LYS LEU TYR ILE ASN ASP TYR SEQRES 16 A 360 ASN THR GLU VAL PRO SER LYS ARG ASP ASP LEU TYR ASN SEQRES 17 A 360 LEU VAL LYS ASP LEU LEU GLU GLN GLY VAL PRO ILE ASP SEQRES 18 A 360 GLY VAL GLY HIS GLN SER HIS ILE GLN ILE GLY TRP PRO SEQRES 19 A 360 SER ILE GLU ASP THR ARG ALA SER PHE GLU LYS PHE THR SEQRES 20 A 360 SER LEU GLY LEU ASP ASN GLN VAL THR GLU LEU ASP MET SEQRES 21 A 360 SER LEU TYR GLY TRP PRO PRO THR GLY ALA TYR THR SER SEQRES 22 A 360 TYR ASP ASP ILE PRO ALA GLU LEU LEU GLN ALA GLN ALA SEQRES 23 A 360 ASP ARG TYR ASP GLN LEU PHE GLU LEU TYR GLU GLU LEU SEQRES 24 A 360 ALA ALA ASP ILE SER SER VAL THR PHE TRP GLY ILE ALA SEQRES 25 A 360 ASP ASN HIS THR TRP LEU ASP GLY ARG ALA ARG GLU TYR SEQRES 26 A 360 ASN ASN GLY VAL GLY ILE ASP ALA PRO PHE VAL PHE ASP SEQRES 27 A 360 HIS ASN TYR ARG VAL LYS PRO ALA TYR TRP ARG ILE ILE SEQRES 28 A 360 ASP LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 360 MET ASN ASP GLN PRO PHE ALA TRP GLN VAL ALA SER LEU SEQRES 2 B 360 SER GLU ARG TYR GLN GLU GLN PHE ASP ILE GLY ALA ALA SEQRES 3 B 360 VAL GLU PRO TYR GLN LEU GLU GLY ARG GLN ALA GLN ILE SEQRES 4 B 360 LEU LYS HIS HIS TYR ASN SER LEU VAL ALA GLU ASN ALA SEQRES 5 B 360 MET LYS PRO GLU SER LEU GLN PRO ARG GLU GLY GLU TRP SEQRES 6 B 360 ASN TRP GLU GLY ALA ASP LYS ILE VAL GLU PHE ALA ARG SEQRES 7 B 360 LYS HIS ASN MET GLU LEU ARG PHE HIS THR LEU VAL TRP SEQRES 8 B 360 HIS SER GLN VAL PRO GLU TRP PHE PHE ILE ASP GLU ASP SEQRES 9 B 360 GLY ASN ARG MET VAL ASP GLU THR ASP PRO ASP LYS ARG SEQRES 10 B 360 GLU ALA ASN LYS GLN LEU LEU LEU GLU ARG MET GLU ASN SEQRES 11 B 360 HIS ILE LYS THR VAL VAL GLU ARG TYR LYS ASP ASP VAL SEQRES 12 B 360 THR SER TRP ASP VAL VAL ASN GLU VAL ILE ASP ASP GLY SEQRES 13 B 360 GLY GLY LEU ARG GLU SER GLU TRP TYR GLN ILE THR GLY SEQRES 14 B 360 THR ASP TYR ILE LYS VAL ALA PHE GLU THR ALA ARG LYS SEQRES 15 B 360 TYR GLY GLY GLU GLU ALA LYS LEU TYR ILE ASN ASP TYR SEQRES 16 B 360 ASN THR GLU VAL PRO SER LYS ARG ASP ASP LEU TYR ASN SEQRES 17 B 360 LEU VAL LYS ASP LEU LEU GLU GLN GLY VAL PRO ILE ASP SEQRES 18 B 360 GLY VAL GLY HIS GLN SER HIS ILE GLN ILE GLY TRP PRO SEQRES 19 B 360 SER ILE GLU ASP THR ARG ALA SER PHE GLU LYS PHE THR SEQRES 20 B 360 SER LEU GLY LEU ASP ASN GLN VAL THR GLU LEU ASP MET SEQRES 21 B 360 SER LEU TYR GLY TRP PRO PRO THR GLY ALA TYR THR SER SEQRES 22 B 360 TYR ASP ASP ILE PRO ALA GLU LEU LEU GLN ALA GLN ALA SEQRES 23 B 360 ASP ARG TYR ASP GLN LEU PHE GLU LEU TYR GLU GLU LEU SEQRES 24 B 360 ALA ALA ASP ILE SER SER VAL THR PHE TRP GLY ILE ALA SEQRES 25 B 360 ASP ASN HIS THR TRP LEU ASP GLY ARG ALA ARG GLU TYR SEQRES 26 B 360 ASN ASN GLY VAL GLY ILE ASP ALA PRO PHE VAL PHE ASP SEQRES 27 B 360 HIS ASN TYR ARG VAL LYS PRO ALA TYR TRP ARG ILE ILE SEQRES 28 B 360 ASP LEU GLU HIS HIS HIS HIS HIS HIS HET XYP C 1 10 HET XYP C 2 9 HET XYP D 1 10 HET XYP D 2 9 HET XYP E 1 10 HET XYP E 2 9 HET XYP F 1 10 HET XYP F 2 9 HET CA A 501 1 HET CA A 502 1 HET CA A 503 1 HET CA A 504 1 HET CA A 505 1 HET ACT A 506 4 HET ACT A 507 4 HET MPD A 508 8 HET MPD A 509 8 HET MPD A 510 8 HET MPD A 511 8 HET MPD A 512 8 HET TRS A 513 8 HET TRS A 514 8 HET PEG A 515 7 HET CA B 501 1 HET CA B 502 1 HET CA B 503 1 HET CA B 504 1 HET ACT B 505 4 HET ACT B 506 4 HET MPD B 507 8 HET MPD B 508 8 HET TRS B 509 8 HET PEG B 510 7 HETNAM XYP BETA-D-XYLOPYRANOSE HETNAM CA CALCIUM ION HETNAM ACT ACETATE ION HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN XYP BETA-D-XYLOSE; D-XYLOSE; XYLOSE HETSYN TRS TRIS BUFFER FORMUL 3 XYP 8(C5 H10 O5) FORMUL 7 CA 9(CA 2+) FORMUL 12 ACT 4(C2 H3 O2 1-) FORMUL 14 MPD 7(C6 H14 O2) FORMUL 19 TRS 3(C4 H12 N O3 1+) FORMUL 21 PEG 2(C4 H10 O3) FORMUL 32 HOH *548(H2 O) HELIX 1 AA1 PHE A 5 VAL A 9 5 5 HELIX 2 AA2 SER A 11 TYR A 16 1 6 HELIX 3 AA3 GLU A 27 LEU A 31 5 5 HELIX 4 AA4 GLU A 32 TYR A 43 1 12 HELIX 5 AA5 LYS A 53 GLN A 58 1 6 HELIX 6 AA6 TRP A 66 HIS A 79 1 14 HELIX 7 AA7 PRO A 95 ILE A 100 5 6 HELIX 8 AA8 ARG A 106 GLU A 110 5 5 HELIX 9 AA9 ASP A 112 LYS A 139 1 28 HELIX 10 AB1 SER A 161 GLY A 168 1 8 HELIX 11 AB2 THR A 169 GLY A 184 1 16 HELIX 12 AB3 VAL A 198 GLN A 215 1 18 HELIX 13 AB4 SER A 234 SER A 247 1 14 HELIX 14 AB5 SER A 272 ILE A 276 5 5 HELIX 15 AB6 PRO A 277 LEU A 298 1 22 HELIX 16 AB7 THR A 315 ASN A 325 1 11 HELIX 17 AB8 LYS A 343 ASP A 351 1 9 HELIX 18 AB9 PHE B 5 VAL B 9 5 5 HELIX 19 AC1 SER B 11 TYR B 16 1 6 HELIX 20 AC2 GLU B 27 LEU B 31 5 5 HELIX 21 AC3 GLU B 32 TYR B 43 1 12 HELIX 22 AC4 LYS B 53 GLN B 58 1 6 HELIX 23 AC5 TRP B 66 HIS B 79 1 14 HELIX 24 AC6 PRO B 95 ILE B 100 5 6 HELIX 25 AC7 ARG B 106 GLU B 110 5 5 HELIX 26 AC8 ASP B 112 LYS B 139 1 28 HELIX 27 AC9 SER B 161 GLY B 168 1 8 HELIX 28 AD1 THR B 169 GLY B 184 1 16 HELIX 29 AD2 VAL B 198 GLN B 215 1 18 HELIX 30 AD3 SER B 234 SER B 247 1 14 HELIX 31 AD4 SER B 272 ILE B 276 5 5 HELIX 32 AD5 PRO B 277 LEU B 298 1 22 HELIX 33 AD6 THR B 315 TYR B 324 1 10 HELIX 34 AD7 LYS B 343 ASP B 351 1 9 SHEET 1 AA110 HIS A 227 GLN A 229 0 SHEET 2 AA110 ASP A 251 SER A 260 1 O SER A 260 N ILE A 228 SHEET 3 AA110 ILE A 302 PHE A 307 1 O THR A 306 N VAL A 254 SHEET 4 AA110 ASP A 21 VAL A 26 1 N GLY A 23 O PHE A 307 SHEET 5 AA110 SER A 45 ALA A 48 1 O VAL A 47 N VAL A 26 SHEET 6 AA110 GLU A 82 VAL A 89 1 O ARG A 84 N LEU A 46 SHEET 7 AA110 SER A 144 ASN A 149 1 O ASP A 146 N PHE A 85 SHEET 8 AA110 LYS A 188 ASP A 193 1 O TYR A 190 N TRP A 145 SHEET 9 AA110 GLY A 221 HIS A 224 1 O GLY A 223 N ILE A 191 SHEET 10 AA110 ASP A 251 SER A 260 1 O GLN A 253 N HIS A 224 SHEET 1 AA210 HIS B 227 GLN B 229 0 SHEET 2 AA210 ASP B 251 SER B 260 1 O ASP B 258 N ILE B 228 SHEET 3 AA210 ILE B 302 PHE B 307 1 O THR B 306 N VAL B 254 SHEET 4 AA210 ASP B 21 VAL B 26 1 N GLY B 23 O PHE B 307 SHEET 5 AA210 SER B 45 ALA B 48 1 O VAL B 47 N VAL B 26 SHEET 6 AA210 GLU B 82 VAL B 89 1 O ARG B 84 N LEU B 46 SHEET 7 AA210 SER B 144 ASN B 149 1 O ASP B 146 N PHE B 85 SHEET 8 AA210 LYS B 188 ASP B 193 1 O TYR B 190 N TRP B 145 SHEET 9 AA210 GLY B 221 HIS B 224 1 O GLY B 223 N ILE B 191 SHEET 10 AA210 ASP B 251 SER B 260 1 O GLN B 253 N HIS B 224 LINK O4 XYP C 1 C1 XYP C 2 1555 1555 1.38 LINK O4 XYP D 1 C1 XYP D 2 1555 1555 1.37 LINK O4 XYP E 1 C1 XYP E 2 1555 1555 1.38 LINK O4 XYP F 1 C1 XYP F 2 1555 1555 1.37 LINK O GLN A 19 CA CA A 503 1555 1555 2.30 LINK OD1 ASP A 21 CA CA A 502 1555 1555 2.90 LINK OD2 ASP A 21 CA CA A 502 1555 1555 2.32 LINK OE1 GLU A 82 CA CA A 502 1555 1555 2.60 LINK OE2 GLU A 82 CA CA A 502 1555 1555 2.41 LINK OH TYR A 273 CA CA A 505 1555 1555 2.45 LINK OD1 ASP A 289 CA CA A 501 1555 1555 2.31 LINK OD1 ASP A 289 CA CA A 504 1555 1555 2.94 LINK OD2 ASP A 289 CA CA A 504 1555 1555 2.37 LINK OE2 GLU A 293 CA CA A 504 1555 1555 2.30 LINK O ALA A 299 CA CA A 503 1555 1555 2.27 LINK O ILE A 302 CA CA A 503 1555 1555 2.36 LINK O ASP A 312 CA CA A 505 1555 1555 2.30 LINK OD1 ASP A 318 CA CA A 505 1555 1555 2.40 LINK OD2 ASP A 318 CA CA A 505 1555 1555 2.60 LINK O ASP A 331 CA CA A 505 1555 1555 2.37 LINK O ARG A 348 CA CA A 501 1555 1555 2.33 LINK OD1 ASP A 351 CA CA A 501 1555 1555 2.57 LINK OE1 GLU A 353 CA CA A 501 1555 1555 2.41 LINK OE2 GLU A 353 CA CA A 504 1555 1555 2.28 LINK CA CA A 501 O HOH A 619 1555 1555 2.49 LINK CA CA A 501 O HOH A 692 1555 1555 2.52 LINK CA CA A 501 O HOH A 757 1555 1555 2.43 LINK CA CA A 502 O HOH A 684 1555 1555 2.49 LINK CA CA A 502 O HOH A 781 1555 1555 2.41 LINK CA CA A 502 O HOH A 827 1555 1555 2.41 LINK CA CA A 502 O HOH B 613 1555 2546 2.42 LINK CA CA A 503 O2 PEG A 515 1555 1555 2.35 LINK CA CA A 503 O HOH A 790 1555 1555 2.45 LINK CA CA A 504 O HOH A 770 1555 1555 2.51 LINK CA CA A 504 OE1 GLU B 14 1555 1555 2.74 LINK CA CA A 504 OE2 GLU B 14 1555 1555 2.37 LINK CA CA A 504 OE1 GLN B 17 1555 1555 2.47 LINK O HOH A 784 CA CA B 502 1555 1555 2.53 LINK O GLN B 19 CA CA B 503 1555 1555 2.26 LINK OD1 ASP B 21 CA CA B 502 1555 1555 2.72 LINK OD2 ASP B 21 CA CA B 502 1555 1555 2.33 LINK OE1 GLU B 82 CA CA B 502 1555 1555 2.50 LINK OE2 GLU B 82 CA CA B 502 1555 1555 2.37 LINK OH TYR B 273 CA CA B 504 1555 1555 2.35 LINK OD1 ASP B 289 CA CA B 501 1555 1555 2.45 LINK O ALA B 299 CA CA B 503 1555 1555 2.33 LINK O ILE B 302 CA CA B 503 1555 1555 2.34 LINK O ASP B 312 CA CA B 504 1555 1555 2.33 LINK OD1 ASP B 318 CA CA B 504 1555 1555 2.39 LINK OD2 ASP B 318 CA CA B 504 1555 1555 2.61 LINK O ASP B 331 CA CA B 504 1555 1555 2.41 LINK O ARG B 348 CA CA B 501 1555 1555 2.37 LINK OD1AASP B 351 CA CA B 501 1555 1555 2.44 LINK OD1BASP B 351 CA CA B 501 1555 1555 2.51 LINK OD2AASP B 351 CA CA B 501 1555 1555 2.80 LINK OE2 GLU B 353 CA CA B 501 1555 1555 2.36 LINK CA CA B 501 O HOH B 617 1555 1555 2.34 LINK CA CA B 501 O HOH B 620 1555 1555 2.42 LINK CA CA B 501 O HOH B 725 1555 1555 2.43 LINK CA CA B 502 O HOH B 693 1555 1555 2.35 LINK CA CA B 502 O HOH B 804 1555 1555 2.48 LINK CA CA B 502 O HOH B 810 1555 1555 2.46 LINK CA CA B 503 O HOH B 818 1555 1555 2.47 LINK CA CA B 503 O HOH B 823 1555 1555 2.48 LINK CA CA B 503 O HOH B 834 1555 1555 2.43 CISPEP 1 HIS A 86 THR A 87 0 0.06 CISPEP 2 TRP A 232 PRO A 233 0 -6.34 CISPEP 3 TRP A 264 PRO A 265 0 -5.99 CISPEP 4 HIS B 86 THR B 87 0 -1.12 CISPEP 5 TRP B 232 PRO B 233 0 -5.00 CISPEP 6 TRP B 264 PRO B 265 0 -6.35 CRYST1 88.702 53.335 96.567 90.00 93.58 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011274 0.000000 0.000705 0.00000 SCALE2 0.000000 0.018749 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010376 0.00000