data_8YAC # _entry.id 8YAC # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.404 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8YAC pdb_00008yac 10.2210/pdb8yac/pdb WWPDB D_1300045263 ? ? EMDB EMD-39095 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2025-09-03 ? 2 'EM metadata' 1 0 2025-09-03 ? 3 'Half map' 1 0 2025-09-03 1 4 'Half map' 1 0 2025-09-03 2 5 Image 1 0 2025-09-03 ? 6 'Primary map' 1 0 2025-09-03 ? # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 2 'EM metadata' repository 'Initial release' ? ? 3 3 'Half map' repository 'Initial release' ? ? 4 4 'Half map' repository 'Initial release' ? ? 5 5 Image repository 'Initial release' ? ? 6 6 'Primary map' repository 'Initial release' ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 8YAC _pdbx_database_status.recvd_initial_deposition_date 2024-02-08 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Funes-induced Orb2 amyloid like endogenous Orb2 amyloid' _pdbx_database_related.db_id EMD-39095 _pdbx_database_related.content_type 'associated EM volume' # loop_ _pdbx_contact_author.id _pdbx_contact_author.email _pdbx_contact_author.name_first _pdbx_contact_author.name_last _pdbx_contact_author.name_mi _pdbx_contact_author.role _pdbx_contact_author.identifier_ORCID 3 ruhm@hku.hk Ruben 'Hervas Millan' ? 'principal investigator/group leader' 0000-0001-6393-6058 4 ksi@stowers.org Kausik Si ? 'principal investigator/group leader' 0000-0002-9613-6273 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Hervas, R.' 1 0000-0001-6393-6058 'Si, K.' 2 0000-0002-9613-6273 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'J-domain protein Funes enhances memory by facilitating amyloid formation.' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Patton, K.' 1 ? primary 'Yi, Y.' 2 ? primary 'Burt, R.' 3 ? primary 'Ng, K.K.S.' 4 ? primary 'Mukhi, M.' 5 ? primary 'Khaki, S.' 6 ? primary 'Hervas, R.' 7 ? primary 'Si, K.' 8 ? # _entity.id 1 _entity.type polymer _entity.src_method nat _entity.pdbx_description 'Translational regulator orb2' _entity.formula_weight 3974.170 _entity.pdbx_number_of_molecules 9 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code QLHQQQHQQQHQQHQQHQQQQQLHQHQQQLS _entity_poly.pdbx_seq_one_letter_code_can QLHQQQHQQQHQQHQQHQQQQQLHQHQQQLS _entity_poly.pdbx_strand_id A,B,C,D,E,F,G,H,I _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLN n 1 2 LEU n 1 3 HIS n 1 4 GLN n 1 5 GLN n 1 6 GLN n 1 7 HIS n 1 8 GLN n 1 9 GLN n 1 10 GLN n 1 11 HIS n 1 12 GLN n 1 13 GLN n 1 14 HIS n 1 15 GLN n 1 16 GLN n 1 17 HIS n 1 18 GLN n 1 19 GLN n 1 20 GLN n 1 21 GLN n 1 22 GLN n 1 23 LEU n 1 24 HIS n 1 25 GLN n 1 26 HIS n 1 27 GLN n 1 28 GLN n 1 29 GLN n 1 30 LEU n 1 31 SER n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num 1 _entity_src_nat.pdbx_end_seq_num 31 _entity_src_nat.common_name 'fruit fly' _entity_src_nat.pdbx_organism_scientific 'Drosophila melanogaster' _entity_src_nat.pdbx_ncbi_taxonomy_id 7227 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLN 1 176 176 GLN GLN A . n A 1 2 LEU 2 177 177 LEU LEU A . n A 1 3 HIS 3 178 178 HIS HIS A . n A 1 4 GLN 4 179 179 GLN GLN A . n A 1 5 GLN 5 180 180 GLN GLN A . n A 1 6 GLN 6 181 181 GLN GLN A . n A 1 7 HIS 7 182 182 HIS HIS A . n A 1 8 GLN 8 183 183 GLN GLN A . n A 1 9 GLN 9 184 184 GLN GLN A . n A 1 10 GLN 10 185 185 GLN GLN A . n A 1 11 HIS 11 186 186 HIS HIS A . n A 1 12 GLN 12 187 187 GLN GLN A . n A 1 13 GLN 13 188 188 GLN GLN A . n A 1 14 HIS 14 189 189 HIS HIS A . n A 1 15 GLN 15 190 190 GLN GLN A . n A 1 16 GLN 16 191 191 GLN GLN A . n A 1 17 HIS 17 192 192 HIS HIS A . n A 1 18 GLN 18 193 193 GLN GLN A . n A 1 19 GLN 19 194 194 GLN GLN A . n A 1 20 GLN 20 195 195 GLN GLN A . n A 1 21 GLN 21 196 196 GLN GLN A . n A 1 22 GLN 22 197 197 GLN GLN A . n A 1 23 LEU 23 198 198 LEU LEU A . n A 1 24 HIS 24 199 199 HIS HIS A . n A 1 25 GLN 25 200 200 GLN GLN A . n A 1 26 HIS 26 201 201 HIS HIS A . n A 1 27 GLN 27 202 202 GLN GLN A . n A 1 28 GLN 28 203 203 GLN GLN A . n A 1 29 GLN 29 204 204 GLN GLN A . n A 1 30 LEU 30 205 205 LEU LEU A . n A 1 31 SER 31 206 206 SER SER A . n B 1 1 GLN 1 176 176 GLN GLN B . n B 1 2 LEU 2 177 177 LEU LEU B . n B 1 3 HIS 3 178 178 HIS HIS B . n B 1 4 GLN 4 179 179 GLN GLN B . n B 1 5 GLN 5 180 180 GLN GLN B . n B 1 6 GLN 6 181 181 GLN GLN B . n B 1 7 HIS 7 182 182 HIS HIS B . n B 1 8 GLN 8 183 183 GLN GLN B . n B 1 9 GLN 9 184 184 GLN GLN B . n B 1 10 GLN 10 185 185 GLN GLN B . n B 1 11 HIS 11 186 186 HIS HIS B . n B 1 12 GLN 12 187 187 GLN GLN B . n B 1 13 GLN 13 188 188 GLN GLN B . n B 1 14 HIS 14 189 189 HIS HIS B . n B 1 15 GLN 15 190 190 GLN GLN B . n B 1 16 GLN 16 191 191 GLN GLN B . n B 1 17 HIS 17 192 192 HIS HIS B . n B 1 18 GLN 18 193 193 GLN GLN B . n B 1 19 GLN 19 194 194 GLN GLN B . n B 1 20 GLN 20 195 195 GLN GLN B . n B 1 21 GLN 21 196 196 GLN GLN B . n B 1 22 GLN 22 197 197 GLN GLN B . n B 1 23 LEU 23 198 198 LEU LEU B . n B 1 24 HIS 24 199 199 HIS HIS B . n B 1 25 GLN 25 200 200 GLN GLN B . n B 1 26 HIS 26 201 201 HIS HIS B . n B 1 27 GLN 27 202 202 GLN GLN B . n B 1 28 GLN 28 203 203 GLN GLN B . n B 1 29 GLN 29 204 204 GLN GLN B . n B 1 30 LEU 30 205 205 LEU LEU B . n B 1 31 SER 31 206 206 SER SER B . n C 1 1 GLN 1 176 176 GLN GLN C . n C 1 2 LEU 2 177 177 LEU LEU C . n C 1 3 HIS 3 178 178 HIS HIS C . n C 1 4 GLN 4 179 179 GLN GLN C . n C 1 5 GLN 5 180 180 GLN GLN C . n C 1 6 GLN 6 181 181 GLN GLN C . n C 1 7 HIS 7 182 182 HIS HIS C . n C 1 8 GLN 8 183 183 GLN GLN C . n C 1 9 GLN 9 184 184 GLN GLN C . n C 1 10 GLN 10 185 185 GLN GLN C . n C 1 11 HIS 11 186 186 HIS HIS C . n C 1 12 GLN 12 187 187 GLN GLN C . n C 1 13 GLN 13 188 188 GLN GLN C . n C 1 14 HIS 14 189 189 HIS HIS C . n C 1 15 GLN 15 190 190 GLN GLN C . n C 1 16 GLN 16 191 191 GLN GLN C . n C 1 17 HIS 17 192 192 HIS HIS C . n C 1 18 GLN 18 193 193 GLN GLN C . n C 1 19 GLN 19 194 194 GLN GLN C . n C 1 20 GLN 20 195 195 GLN GLN C . n C 1 21 GLN 21 196 196 GLN GLN C . n C 1 22 GLN 22 197 197 GLN GLN C . n C 1 23 LEU 23 198 198 LEU LEU C . n C 1 24 HIS 24 199 199 HIS HIS C . n C 1 25 GLN 25 200 200 GLN GLN C . n C 1 26 HIS 26 201 201 HIS HIS C . n C 1 27 GLN 27 202 202 GLN GLN C . n C 1 28 GLN 28 203 203 GLN GLN C . n C 1 29 GLN 29 204 204 GLN GLN C . n C 1 30 LEU 30 205 205 LEU LEU C . n C 1 31 SER 31 206 206 SER SER C . n D 1 1 GLN 1 176 176 GLN GLN D . n D 1 2 LEU 2 177 177 LEU LEU D . n D 1 3 HIS 3 178 178 HIS HIS D . n D 1 4 GLN 4 179 179 GLN GLN D . n D 1 5 GLN 5 180 180 GLN GLN D . n D 1 6 GLN 6 181 181 GLN GLN D . n D 1 7 HIS 7 182 182 HIS HIS D . n D 1 8 GLN 8 183 183 GLN GLN D . n D 1 9 GLN 9 184 184 GLN GLN D . n D 1 10 GLN 10 185 185 GLN GLN D . n D 1 11 HIS 11 186 186 HIS HIS D . n D 1 12 GLN 12 187 187 GLN GLN D . n D 1 13 GLN 13 188 188 GLN GLN D . n D 1 14 HIS 14 189 189 HIS HIS D . n D 1 15 GLN 15 190 190 GLN GLN D . n D 1 16 GLN 16 191 191 GLN GLN D . n D 1 17 HIS 17 192 192 HIS HIS D . n D 1 18 GLN 18 193 193 GLN GLN D . n D 1 19 GLN 19 194 194 GLN GLN D . n D 1 20 GLN 20 195 195 GLN GLN D . n D 1 21 GLN 21 196 196 GLN GLN D . n D 1 22 GLN 22 197 197 GLN GLN D . n D 1 23 LEU 23 198 198 LEU LEU D . n D 1 24 HIS 24 199 199 HIS HIS D . n D 1 25 GLN 25 200 200 GLN GLN D . n D 1 26 HIS 26 201 201 HIS HIS D . n D 1 27 GLN 27 202 202 GLN GLN D . n D 1 28 GLN 28 203 203 GLN GLN D . n D 1 29 GLN 29 204 204 GLN GLN D . n D 1 30 LEU 30 205 205 LEU LEU D . n D 1 31 SER 31 206 206 SER SER D . n E 1 1 GLN 1 176 176 GLN GLN E . n E 1 2 LEU 2 177 177 LEU LEU E . n E 1 3 HIS 3 178 178 HIS HIS E . n E 1 4 GLN 4 179 179 GLN GLN E . n E 1 5 GLN 5 180 180 GLN GLN E . n E 1 6 GLN 6 181 181 GLN GLN E . n E 1 7 HIS 7 182 182 HIS HIS E . n E 1 8 GLN 8 183 183 GLN GLN E . n E 1 9 GLN 9 184 184 GLN GLN E . n E 1 10 GLN 10 185 185 GLN GLN E . n E 1 11 HIS 11 186 186 HIS HIS E . n E 1 12 GLN 12 187 187 GLN GLN E . n E 1 13 GLN 13 188 188 GLN GLN E . n E 1 14 HIS 14 189 189 HIS HIS E . n E 1 15 GLN 15 190 190 GLN GLN E . n E 1 16 GLN 16 191 191 GLN GLN E . n E 1 17 HIS 17 192 192 HIS HIS E . n E 1 18 GLN 18 193 193 GLN GLN E . n E 1 19 GLN 19 194 194 GLN GLN E . n E 1 20 GLN 20 195 195 GLN GLN E . n E 1 21 GLN 21 196 196 GLN GLN E . n E 1 22 GLN 22 197 197 GLN GLN E . n E 1 23 LEU 23 198 198 LEU LEU E . n E 1 24 HIS 24 199 199 HIS HIS E . n E 1 25 GLN 25 200 200 GLN GLN E . n E 1 26 HIS 26 201 201 HIS HIS E . n E 1 27 GLN 27 202 202 GLN GLN E . n E 1 28 GLN 28 203 203 GLN GLN E . n E 1 29 GLN 29 204 204 GLN GLN E . n E 1 30 LEU 30 205 205 LEU LEU E . n E 1 31 SER 31 206 206 SER SER E . n F 1 1 GLN 1 176 176 GLN GLN F . n F 1 2 LEU 2 177 177 LEU LEU F . n F 1 3 HIS 3 178 178 HIS HIS F . n F 1 4 GLN 4 179 179 GLN GLN F . n F 1 5 GLN 5 180 180 GLN GLN F . n F 1 6 GLN 6 181 181 GLN GLN F . n F 1 7 HIS 7 182 182 HIS HIS F . n F 1 8 GLN 8 183 183 GLN GLN F . n F 1 9 GLN 9 184 184 GLN GLN F . n F 1 10 GLN 10 185 185 GLN GLN F . n F 1 11 HIS 11 186 186 HIS HIS F . n F 1 12 GLN 12 187 187 GLN GLN F . n F 1 13 GLN 13 188 188 GLN GLN F . n F 1 14 HIS 14 189 189 HIS HIS F . n F 1 15 GLN 15 190 190 GLN GLN F . n F 1 16 GLN 16 191 191 GLN GLN F . n F 1 17 HIS 17 192 192 HIS HIS F . n F 1 18 GLN 18 193 193 GLN GLN F . n F 1 19 GLN 19 194 194 GLN GLN F . n F 1 20 GLN 20 195 195 GLN GLN F . n F 1 21 GLN 21 196 196 GLN GLN F . n F 1 22 GLN 22 197 197 GLN GLN F . n F 1 23 LEU 23 198 198 LEU LEU F . n F 1 24 HIS 24 199 199 HIS HIS F . n F 1 25 GLN 25 200 200 GLN GLN F . n F 1 26 HIS 26 201 201 HIS HIS F . n F 1 27 GLN 27 202 202 GLN GLN F . n F 1 28 GLN 28 203 203 GLN GLN F . n F 1 29 GLN 29 204 204 GLN GLN F . n F 1 30 LEU 30 205 205 LEU LEU F . n F 1 31 SER 31 206 206 SER SER F . n G 1 1 GLN 1 176 176 GLN GLN G . n G 1 2 LEU 2 177 177 LEU LEU G . n G 1 3 HIS 3 178 178 HIS HIS G . n G 1 4 GLN 4 179 179 GLN GLN G . n G 1 5 GLN 5 180 180 GLN GLN G . n G 1 6 GLN 6 181 181 GLN GLN G . n G 1 7 HIS 7 182 182 HIS HIS G . n G 1 8 GLN 8 183 183 GLN GLN G . n G 1 9 GLN 9 184 184 GLN GLN G . n G 1 10 GLN 10 185 185 GLN GLN G . n G 1 11 HIS 11 186 186 HIS HIS G . n G 1 12 GLN 12 187 187 GLN GLN G . n G 1 13 GLN 13 188 188 GLN GLN G . n G 1 14 HIS 14 189 189 HIS HIS G . n G 1 15 GLN 15 190 190 GLN GLN G . n G 1 16 GLN 16 191 191 GLN GLN G . n G 1 17 HIS 17 192 192 HIS HIS G . n G 1 18 GLN 18 193 193 GLN GLN G . n G 1 19 GLN 19 194 194 GLN GLN G . n G 1 20 GLN 20 195 195 GLN GLN G . n G 1 21 GLN 21 196 196 GLN GLN G . n G 1 22 GLN 22 197 197 GLN GLN G . n G 1 23 LEU 23 198 198 LEU LEU G . n G 1 24 HIS 24 199 199 HIS HIS G . n G 1 25 GLN 25 200 200 GLN GLN G . n G 1 26 HIS 26 201 201 HIS HIS G . n G 1 27 GLN 27 202 202 GLN GLN G . n G 1 28 GLN 28 203 203 GLN GLN G . n G 1 29 GLN 29 204 204 GLN GLN G . n G 1 30 LEU 30 205 205 LEU LEU G . n G 1 31 SER 31 206 206 SER SER G . n H 1 1 GLN 1 176 176 GLN GLN H . n H 1 2 LEU 2 177 177 LEU LEU H . n H 1 3 HIS 3 178 178 HIS HIS H . n H 1 4 GLN 4 179 179 GLN GLN H . n H 1 5 GLN 5 180 180 GLN GLN H . n H 1 6 GLN 6 181 181 GLN GLN H . n H 1 7 HIS 7 182 182 HIS HIS H . n H 1 8 GLN 8 183 183 GLN GLN H . n H 1 9 GLN 9 184 184 GLN GLN H . n H 1 10 GLN 10 185 185 GLN GLN H . n H 1 11 HIS 11 186 186 HIS HIS H . n H 1 12 GLN 12 187 187 GLN GLN H . n H 1 13 GLN 13 188 188 GLN GLN H . n H 1 14 HIS 14 189 189 HIS HIS H . n H 1 15 GLN 15 190 190 GLN GLN H . n H 1 16 GLN 16 191 191 GLN GLN H . n H 1 17 HIS 17 192 192 HIS HIS H . n H 1 18 GLN 18 193 193 GLN GLN H . n H 1 19 GLN 19 194 194 GLN GLN H . n H 1 20 GLN 20 195 195 GLN GLN H . n H 1 21 GLN 21 196 196 GLN GLN H . n H 1 22 GLN 22 197 197 GLN GLN H . n H 1 23 LEU 23 198 198 LEU LEU H . n H 1 24 HIS 24 199 199 HIS HIS H . n H 1 25 GLN 25 200 200 GLN GLN H . n H 1 26 HIS 26 201 201 HIS HIS H . n H 1 27 GLN 27 202 202 GLN GLN H . n H 1 28 GLN 28 203 203 GLN GLN H . n H 1 29 GLN 29 204 204 GLN GLN H . n H 1 30 LEU 30 205 205 LEU LEU H . n H 1 31 SER 31 206 206 SER SER H . n I 1 1 GLN 1 176 176 GLN GLN I . n I 1 2 LEU 2 177 177 LEU LEU I . n I 1 3 HIS 3 178 178 HIS HIS I . n I 1 4 GLN 4 179 179 GLN GLN I . n I 1 5 GLN 5 180 180 GLN GLN I . n I 1 6 GLN 6 181 181 GLN GLN I . n I 1 7 HIS 7 182 182 HIS HIS I . n I 1 8 GLN 8 183 183 GLN GLN I . n I 1 9 GLN 9 184 184 GLN GLN I . n I 1 10 GLN 10 185 185 GLN GLN I . n I 1 11 HIS 11 186 186 HIS HIS I . n I 1 12 GLN 12 187 187 GLN GLN I . n I 1 13 GLN 13 188 188 GLN GLN I . n I 1 14 HIS 14 189 189 HIS HIS I . n I 1 15 GLN 15 190 190 GLN GLN I . n I 1 16 GLN 16 191 191 GLN GLN I . n I 1 17 HIS 17 192 192 HIS HIS I . n I 1 18 GLN 18 193 193 GLN GLN I . n I 1 19 GLN 19 194 194 GLN GLN I . n I 1 20 GLN 20 195 195 GLN GLN I . n I 1 21 GLN 21 196 196 GLN GLN I . n I 1 22 GLN 22 197 197 GLN GLN I . n I 1 23 LEU 23 198 198 LEU LEU I . n I 1 24 HIS 24 199 199 HIS HIS I . n I 1 25 GLN 25 200 200 GLN GLN I . n I 1 26 HIS 26 201 201 HIS HIS I . n I 1 27 GLN 27 202 202 GLN GLN I . n I 1 28 GLN 28 203 203 GLN GLN I . n I 1 29 GLN 29 204 204 GLN GLN I . n I 1 30 LEU 30 205 205 LEU LEU I . n I 1 31 SER 31 206 206 SER SER I . n # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 8YAC _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? _cell.pdbx_esd_method ? # _symmetry.entry_id 8YAC _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8YAC _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 8YAC _struct.title 'Funes-induced Orb2 amyloid like endogenous Orb2 amyloid' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8YAC _struct_keywords.text 'Translator regulator, chaperone, PROTEIN FIBRIL' _struct_keywords.pdbx_keywords 'PROTEIN FIBRIL' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 1 ? H N N 1 ? I N N 1 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code ORB2_DROME _struct_ref.pdbx_db_accession Q9VSR3 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code QLHQQQHQQQHQQHQQHQQQQQLHQHQQQLS _struct_ref.pdbx_align_begin 176 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 8YAC A 1 ? 31 ? Q9VSR3 176 ? 206 ? 176 206 2 1 8YAC B 1 ? 31 ? Q9VSR3 176 ? 206 ? 176 206 3 1 8YAC C 1 ? 31 ? Q9VSR3 176 ? 206 ? 176 206 4 1 8YAC D 1 ? 31 ? Q9VSR3 176 ? 206 ? 176 206 5 1 8YAC E 1 ? 31 ? Q9VSR3 176 ? 206 ? 176 206 6 1 8YAC F 1 ? 31 ? Q9VSR3 176 ? 206 ? 176 206 7 1 8YAC G 1 ? 31 ? Q9VSR3 176 ? 206 ? 176 206 8 1 8YAC H 1 ? 31 ? Q9VSR3 176 ? 206 ? 176 206 9 1 8YAC I 1 ? 31 ? Q9VSR3 176 ? 206 ? 176 206 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details nonameric _pdbx_struct_assembly.oligomeric_count 9 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'electron microscopy' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 3 ? AA3 ? 3 ? AA4 ? 3 ? AA5 ? 3 ? AA6 ? 3 ? AA7 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA2 1 2 ? parallel AA2 2 3 ? parallel AA3 1 2 ? parallel AA3 2 3 ? parallel AA4 1 2 ? parallel AA4 2 3 ? parallel AA5 1 2 ? parallel AA5 2 3 ? parallel AA6 1 2 ? parallel AA6 2 3 ? parallel AA7 1 2 ? parallel AA7 2 3 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 GLN F 5 ? HIS F 11 ? GLN F 180 HIS F 186 AA1 2 LEU A 2 ? HIS A 11 ? LEU A 177 HIS A 186 AA1 3 LEU G 2 ? HIS G 11 ? LEU G 177 HIS G 186 AA2 1 GLN F 22 ? GLN F 29 ? GLN F 197 GLN F 204 AA2 2 GLN A 22 ? GLN A 29 ? GLN A 197 GLN A 204 AA2 3 GLN G 22 ? LEU G 23 ? GLN G 197 LEU G 198 AA3 1 GLN F 22 ? GLN F 29 ? GLN F 197 GLN F 204 AA3 2 GLN A 22 ? GLN A 29 ? GLN A 197 GLN A 204 AA3 3 HIS G 26 ? GLN G 29 ? HIS G 201 GLN G 204 AA4 1 GLN D 5 ? HIS D 11 ? GLN D 180 HIS D 186 AA4 2 GLN B 5 ? HIS B 11 ? GLN B 180 HIS B 186 AA4 3 GLN E 5 ? HIS E 11 ? GLN E 180 HIS E 186 AA5 1 GLN D 22 ? GLN D 29 ? GLN D 197 GLN D 204 AA5 2 GLN B 22 ? GLN B 29 ? GLN B 197 GLN B 204 AA5 3 GLN E 22 ? GLN E 29 ? GLN E 197 GLN E 204 AA6 1 GLN H 5 ? HIS H 11 ? GLN H 180 HIS H 186 AA6 2 LEU C 2 ? HIS C 11 ? LEU C 177 HIS C 186 AA6 3 LEU I 2 ? HIS I 11 ? LEU I 177 HIS I 186 AA7 1 GLN H 22 ? GLN H 29 ? GLN H 197 GLN H 204 AA7 2 GLN C 22 ? GLN C 29 ? GLN C 197 GLN C 204 AA7 3 GLN I 22 ? GLN I 29 ? GLN I 197 GLN I 204 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O GLN F 10 ? O GLN F 185 N HIS A 11 ? N HIS A 186 AA1 2 3 N LEU A 2 ? N LEU A 177 O HIS G 3 ? O HIS G 178 AA2 1 2 O LEU F 23 ? O LEU F 198 N HIS A 24 ? N HIS A 199 AA2 2 3 N LEU A 23 ? N LEU A 198 O GLN G 22 ? O GLN G 197 AA3 1 2 O LEU F 23 ? O LEU F 198 N HIS A 24 ? N HIS A 199 AA3 2 3 N GLN A 27 ? N GLN A 202 O GLN G 28 ? O GLN G 203 AA4 1 2 O GLN D 10 ? O GLN D 185 N HIS B 11 ? N HIS B 186 AA4 2 3 N GLN B 6 ? N GLN B 181 O HIS E 7 ? O HIS E 182 AA5 1 2 O LEU D 23 ? O LEU D 198 N HIS B 24 ? N HIS B 199 AA5 2 3 N LEU B 23 ? N LEU B 198 O HIS E 24 ? O HIS E 199 AA6 1 2 O GLN H 10 ? O GLN H 185 N HIS C 11 ? N HIS C 186 AA6 2 3 N GLN C 10 ? N GLN C 185 O HIS I 11 ? O HIS I 186 AA7 1 2 O LEU H 23 ? O LEU H 198 N HIS C 24 ? N HIS C 199 AA7 2 3 N LEU C 23 ? N LEU C 198 O HIS I 24 ? O HIS I 199 # _pdbx_entry_details.entry_id 8YAC _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 193 ? ? -91.17 54.85 2 1 GLN B 193 ? ? -91.25 54.85 3 1 GLN C 193 ? ? -91.23 54.88 4 1 GLN D 193 ? ? -91.25 54.98 5 1 GLN E 193 ? ? -91.18 54.89 6 1 GLN F 193 ? ? -91.25 54.87 7 1 GLN G 193 ? ? -91.21 54.84 8 1 GLN H 193 ? ? -91.22 54.94 9 1 GLN I 193 ? ? -91.23 54.87 # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 8YAC _em_3d_fitting.method ? _em_3d_fitting.target_criteria ? _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? # _em_3d_reconstruction.entry_id 8YAC _em_3d_reconstruction.id 1 _em_3d_reconstruction.method ? _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.citation_id ? _em_3d_reconstruction.details ? _em_3d_reconstruction.resolution 3.1 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.magnification_calibration ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.num_particles 7807 _em_3d_reconstruction.euler_angles_details ? _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.symmetry_type HELICAL # _em_buffer.id 1 _em_buffer.specimen_id 1 _em_buffer.name ? _em_buffer.details '10 mM HEPES pH7.15, 75 mM NaCl, 10 mM KCl, 2mM MgCl2 and 5 mM TCEP' _em_buffer.pH 7.15 # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.source NATURAL _em_entity_assembly.type COMPLEX _em_entity_assembly.name 'Funes-induced Orb2 amyloid filament' _em_entity_assembly.details ? _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? _em_entity_assembly.entity_id_list 1 # _em_imaging.entry_id 8YAC _em_imaging.id 1 _em_imaging.astigmatism ? _em_imaging.electron_beam_tilt_params ? _em_imaging.residual_tilt ? _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.specimen_holder_type ? _em_imaging.specimen_holder_model ? _em_imaging.details ? _em_imaging.date ? _em_imaging.accelerating_voltage 300 _em_imaging.illumination_mode OTHER _em_imaging.mode OTHER _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_min 800 _em_imaging.nominal_defocus_max 2600 _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_defocus_max ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.nominal_magnification ? _em_imaging.calibrated_magnification ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.citation_id ? _em_imaging.temperature ? _em_imaging.detector_distance ? _em_imaging.recording_temperature_minimum ? _em_imaging.recording_temperature_maximum ? _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.specimen_id 1 _em_imaging.cryogen ? _em_imaging.objective_aperture ? _em_imaging.microscope_serial_number ? _em_imaging.microscope_version ? # _em_vitrification.entry_id 8YAC _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.cryogen_name ETHANE _em_vitrification.humidity ? _em_vitrification.temp ? _em_vitrification.chamber_temperature ? _em_vitrification.instrument 'FEI VITROBOT MARK IV' _em_vitrification.method ? _em_vitrification.time_resolved_state ? _em_vitrification.citation_id ? _em_vitrification.details ? # _em_experiment.entry_id 8YAC _em_experiment.id 1 _em_experiment.reconstruction_method HELICAL _em_experiment.aggregation_state FILAMENT _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal GLN N N N N 1 GLN CA C N S 2 GLN C C N N 3 GLN O O N N 4 GLN CB C N N 5 GLN CG C N N 6 GLN CD C N N 7 GLN OE1 O N N 8 GLN NE2 N N N 9 GLN OXT O N N 10 GLN H H N N 11 GLN H2 H N N 12 GLN HA H N N 13 GLN HB2 H N N 14 GLN HB3 H N N 15 GLN HG2 H N N 16 GLN HG3 H N N 17 GLN HE21 H N N 18 GLN HE22 H N N 19 GLN HXT H N N 20 HIS N N N N 21 HIS CA C N S 22 HIS C C N N 23 HIS O O N N 24 HIS CB C N N 25 HIS CG C Y N 26 HIS ND1 N Y N 27 HIS CD2 C Y N 28 HIS CE1 C Y N 29 HIS NE2 N Y N 30 HIS OXT O N N 31 HIS H H N N 32 HIS H2 H N N 33 HIS HA H N N 34 HIS HB2 H N N 35 HIS HB3 H N N 36 HIS HD1 H N N 37 HIS HD2 H N N 38 HIS HE1 H N N 39 HIS HE2 H N N 40 HIS HXT H N N 41 LEU N N N N 42 LEU CA C N S 43 LEU C C N N 44 LEU O O N N 45 LEU CB C N N 46 LEU CG C N N 47 LEU CD1 C N N 48 LEU CD2 C N N 49 LEU OXT O N N 50 LEU H H N N 51 LEU H2 H N N 52 LEU HA H N N 53 LEU HB2 H N N 54 LEU HB3 H N N 55 LEU HG H N N 56 LEU HD11 H N N 57 LEU HD12 H N N 58 LEU HD13 H N N 59 LEU HD21 H N N 60 LEU HD22 H N N 61 LEU HD23 H N N 62 LEU HXT H N N 63 SER N N N N 64 SER CA C N S 65 SER C C N N 66 SER O O N N 67 SER CB C N N 68 SER OG O N N 69 SER OXT O N N 70 SER H H N N 71 SER H2 H N N 72 SER HA H N N 73 SER HB2 H N N 74 SER HB3 H N N 75 SER HG H N N 76 SER HXT H N N 77 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GLN N CA sing N N 1 GLN N H sing N N 2 GLN N H2 sing N N 3 GLN CA C sing N N 4 GLN CA CB sing N N 5 GLN CA HA sing N N 6 GLN C O doub N N 7 GLN C OXT sing N N 8 GLN CB CG sing N N 9 GLN CB HB2 sing N N 10 GLN CB HB3 sing N N 11 GLN CG CD sing N N 12 GLN CG HG2 sing N N 13 GLN CG HG3 sing N N 14 GLN CD OE1 doub N N 15 GLN CD NE2 sing N N 16 GLN NE2 HE21 sing N N 17 GLN NE2 HE22 sing N N 18 GLN OXT HXT sing N N 19 HIS N CA sing N N 20 HIS N H sing N N 21 HIS N H2 sing N N 22 HIS CA C sing N N 23 HIS CA CB sing N N 24 HIS CA HA sing N N 25 HIS C O doub N N 26 HIS C OXT sing N N 27 HIS CB CG sing N N 28 HIS CB HB2 sing N N 29 HIS CB HB3 sing N N 30 HIS CG ND1 sing Y N 31 HIS CG CD2 doub Y N 32 HIS ND1 CE1 doub Y N 33 HIS ND1 HD1 sing N N 34 HIS CD2 NE2 sing Y N 35 HIS CD2 HD2 sing N N 36 HIS CE1 NE2 sing Y N 37 HIS CE1 HE1 sing N N 38 HIS NE2 HE2 sing N N 39 HIS OXT HXT sing N N 40 LEU N CA sing N N 41 LEU N H sing N N 42 LEU N H2 sing N N 43 LEU CA C sing N N 44 LEU CA CB sing N N 45 LEU CA HA sing N N 46 LEU C O doub N N 47 LEU C OXT sing N N 48 LEU CB CG sing N N 49 LEU CB HB2 sing N N 50 LEU CB HB3 sing N N 51 LEU CG CD1 sing N N 52 LEU CG CD2 sing N N 53 LEU CG HG sing N N 54 LEU CD1 HD11 sing N N 55 LEU CD1 HD12 sing N N 56 LEU CD1 HD13 sing N N 57 LEU CD2 HD21 sing N N 58 LEU CD2 HD22 sing N N 59 LEU CD2 HD23 sing N N 60 LEU OXT HXT sing N N 61 SER N CA sing N N 62 SER N H sing N N 63 SER N H2 sing N N 64 SER CA C sing N N 65 SER CA CB sing N N 66 SER CA HA sing N N 67 SER C O doub N N 68 SER C OXT sing N N 69 SER CB OG sing N N 70 SER CB HB2 sing N N 71 SER CB HB3 sing N N 72 SER OG HG sing N N 73 SER OXT HXT sing N N 74 # _em_admin.current_status REL _em_admin.deposition_date 2024-02-08 _em_admin.deposition_site PDBJ _em_admin.entry_id 8YAC _em_admin.last_update 2025-09-03 _em_admin.map_release_date 2025-09-03 _em_admin.title 'Funes-induced Orb2 amyloid like endogenous Orb2 amyloid' # _em_ctf_correction.details ? _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' # _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.ncbi_tax_id 7227 _em_entity_assembly_naturalsource.organism 'Drosophila melanogaster' _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? _em_entity_assembly_naturalsource.details ? # _em_helical_entity.id 1 _em_helical_entity.image_processing_id 1 _em_helical_entity.details ? _em_helical_entity.axial_symmetry C3 _em_helical_entity.angular_rotation_per_subunit -1.42 _em_helical_entity.axial_rise_per_subunit 4.82 # _em_image_processing.details ? _em_image_processing.id 1 _em_image_processing.image_recording_id 1 # _em_image_recording.average_exposure_time ? _em_image_recording.avg_electron_dose_per_subtomogram ? _em_image_recording.avg_electron_dose_per_image 49 _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'GATAN K2 SUMMIT (4k x 4k)' _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.category _em_software.details _em_software.id _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id _em_software.name _em_software.version _em_software.reference_DOI 'PARTICLE SELECTION' ? 1 1 ? ? RELION 4.0 ? 'IMAGE ACQUISITION' ? 2 ? ? 1 ? ? ? MASKING ? 3 ? ? ? ? ? ? 'CTF CORRECTION' ? 4 1 ? ? Gctf ? ? 'LAYERLINE INDEXING' ? 5 ? ? ? ? ? ? 'DIFFRACTION INDEXING' ? 6 ? ? ? ? ? ? 'MODEL FITTING' ? 7 ? ? ? ? ? ? 'MODEL REFINEMENT' ? 8 ? ? ? ? ? ? OTHER ? 9 ? ? ? ? ? ? 'INITIAL EULER ASSIGNMENT' ? 10 1 ? ? ? ? ? 'FINAL EULER ASSIGNMENT' ? 11 1 ? ? ? ? ? CLASSIFICATION ? 12 1 ? ? ? ? ? RECONSTRUCTION ? 13 1 ? ? RELION 4.0 ? # _em_specimen.concentration 0.25 _em_specimen.details 'Orb2 amyloid induced by the JDP Funes from oligomeric Orb2 isolte from fly heads' _em_specimen.embedding_applied NO _em_specimen.experiment_id 1 _em_specimen.id 1 _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'Other private' 'United States' ? 1 'Other government' 'Hong Kong' ? 2 # _atom_sites.entry_id 8YAC _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O # loop_ #